Gnathostomata	ANCESTRAL SPECIES	314								ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT01030000235230	ENSGT00950000183142.a.b.a.b #18	ENSGT00990000213077	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00940000168267
Euteleostomi	ANCESTRAL SPECIES	15	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00390000005861 #17	ENSGT00390000004799 #16	ENSGT00940000163104	ENSGT00390000018900 #15	ENSGT01030000235230	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00940000168267
Sarcopterygii	ANCESTRAL SPECIES	173	ENSGT00940000159330	ENSGT01100000263524.G	ENSGT00940000156258	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00940000168267
Tetrapoda	ANCESTRAL SPECIES	129			ENSGT00940000156258	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000179440
Amniota	ANCESTRAL SPECIES	1	ENSGT00940000159934	ENSGT00940000156258	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000000747
Mammalia	ANCESTRAL SPECIES	2	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000000747
Theria	ANCESTRAL SPECIES	12	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000000747
Eutheria	ANCESTRAL SPECIES		ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00410000028378	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00660000097201	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00410000028378	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Primates	ANCESTRAL SPECIES	7	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Haplorrhini	ANCESTRAL SPECIES	41									ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Simiiformes	ANCESTRAL SPECIES	31									ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Catarrhini	ANCESTRAL SPECIES	27	ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00950000183206.b.c.a.b.a.a #9	ENSGT00940000154251.A.b.a.b.a #10	ENSGT00940000164793 #11	ENSGT00940000164691 #12	ENSGT00940000164696 #13	ENSGT00940000154251.A.b.a.a #14	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158.v #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161436.b #35	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000161967 #7	ENSGT01030000234553.b.b.d.d #8	ENSGT00950000183206.b.c.a.b.a.a.a #9	ENSGT00940000154251.A.b.a.b.a #10	ENSGT00940000164793 #11	ENSGT00940000164691 #12	ENSGT00940000164696 #13	ENSGT00940000154251.A.b.a.a #14	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158.v #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00910000146860.b.a.a #31	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161436.b #35	ENSGT00940000161852 #36	ENSGT00390000008164.d
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000161967 #7	ENSGT01030000234553.b.b.d.d #8	ENSGT00950000183206.b.c.a.b.a.a.a #9	ENSGT00940000154251.A.b.a.b.a #10	ENSGT00940000164793 #11	ENSGT00940000164691 #12	ENSGT00940000164696 #13	ENSGT00940000154251.A.b.a.a #14	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158.v #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00910000146860.b.a.a #31	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161436.b #35	ENSGT00940000161852 #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.b #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000161967 #7	ENSGT01030000234553.b.b.d.d #8	ENSGT00950000183206.b.c.a.b.a.a.a #9	ENSGT00940000154251.A.b.a.b.a #10	ENSGT00940000164793 #11	ENSGT00940000164691 #12	ENSGT00940000164696 #13	ENSGT00940000154251.A.b.a.a #14	ENSGT00390000018900.e #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158.v #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00910000146860.b.a.a #31	ENSGT00940000155103.a.b.o #33	ENSGT00950000183059.b.a.b.m #34	ENSGT00940000161436.b #35	ENSGT00940000161852 #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.b #37
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000161967 #7	ENSGT01030000234553.b.b.d.d #8	ENSGT00950000183206.b.c.a.b.a.a.a #9	ENSGT00940000154251.A.b.a.b.a #10	ENSGT00940000164793 #11	ENSGT00940000164691 #12	ENSGT00940000164696 #13	ENSGT00940000154251.A.b.a.a #14	ENSGT00390000018900.e #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158.v #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00910000146860.b.a.a #31	ENSGT00940000155103.a.b.o #33	ENSGT00950000183059.b.a.b.m #34	ENSGT00940000161436.b #35	ENSGT00940000161852 #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.b #37
Pan	ANCESTRAL SPECIES		ENSGT00940000161967 #7	ENSGT01030000234553.b.b.d.d #8	ENSGT00950000183206.b.c.a.b.a.a.a #9	ENSGT00940000154251.A.b.a.b.a #10	ENSGT00940000164793 #11	ENSGT00940000164691 #12	ENSGT00940000164696 #13	ENSGT00940000154251.A.b.a.a #14	ENSGT00390000018900.e #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158.v #23	ENSGT00390000005254.i.a.a.b.a #24	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00910000146860.b.a.a #31	ENSGT00940000155103.a.b.o #33	ENSGT00950000183059.b.a.b.m #34	ENSGT00940000161436.b #35	ENSGT00940000161852 #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.b #37
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES		ZNF496 (ENSPPAG00000034326) #7	VN1R5 (ENSPPAG00000029501) #8	ENSPPAG00000031352 #9	ENSPPAG00000027762 #10	ZNF124 (ENSPPAG00000033440) #11	ENSPPAG00000034337 #12	ZNF670 (ENSPPAG00000042174) #13	ZNF695 (ENSPPAG00000041917) #14	AHCTF1 (ENSPPAG00000039155) #15	SCCPDH (ENSPPAG00000041828) #16	CNST (ENSPPAG00000041140) #17	TFB2M (ENSPPAG00000036577) #18	SMYD3 (ENSPPAG00000037519) #19	KIF26B (ENSPPAG00000036407) #20	ENSPPAG00000030892 #21	HNRNPU (ENSPPAG00000038652) #22	COX20 (ENSPPAG00000033034) #23	ENSPPAG00000027622 #24	DESI2 (ENSPPAG00000036240) #25	CATSPERE (ENSPPAG00000039497) #26	ADSS2 (ENSPPAG00000035584) #27	C1orf100 (ENSPPAG00000029380) #28	ZBTB18 (ENSPPAG00000035489) #29	AKT3 (ENSPPAG00000035578) #30	ENSPPAG00000041794 #31	SDCCAG8 (ENSPPAG00000041964) #32	CEP170 (ENSPPAG00000038692) #33	ENSPPAG00000031548 #34	ENSPPAG00000034254 #35	MAP1LC3C (ENSPPAG00000026353) #36	ENSPPAG00000042191 #37
Bonobo	MODERN SPECIES	2	SLC22A8 (ENSPPAG00000041453)	SLC22A6 (ENSPPAG00000035836)	ENSPPAG00000024710	CHRM1 (ENSPPAG00000018668)	SLC3A2 (ENSPPAG00000020658)	WDR74 (ENSPPAG00000036028)	TEX54 (ENSPPAG00000012450)	STX5 (ENSPPAG00000039956)	NXF1 (ENSPPAG00000041498)	TMEM179B (ENSPPAG00000038907)	TMEM223 (ENSPPAG00000035801)	TAF6L (ENSPPAG00000009707)	POLR2G (ENSPPAG00000039868)	ZBTB3 (ENSPPAG00000031673)	TTC9C (ENSPPAG00000030010)	ENSPPAG00000041471 ##22	GNG3 (ENSPPAG00000032105)	BSCL2 (ENSPPAG00000042902)	UBXN1 (ENSPPAG00000036691)	ENSPPAG00000012147	CSKMT (ENSPPAG00000029192)	LBHD1 (ENSPPAG00000031864)	INTS5 (ENSPPAG00000028305)	GANAB (ENSPPAG00000043210)	B3GAT3 (ENSPPAG00000016802)	ROM1 (ENSPPAG00000035434)	EML3 (ENSPPAG00000031717)	TUT1 (ENSPPAG00000037200)	ENSPPAG00000043560	ENSPPAG00000044021	SCGB1A1 (ENSPPAG00000037115)
Chimpanzee	MODERN SPECIES		ZNF496 (ENSPTRG00000002197) #7	ENSPTRG00000050744 #9	ENSPTRG00000002194 #10	ZNF124 (ENSPTRG00000023216) #11	ZNF669 (ENSPTRG00000048039) #12	ZNF670 (ENSPTRG00000051921) #13	ZNF695 (ENSPTRG00000044426) #14	AHCTF1 (ENSPTRG00000051402) #15	SCCPDH (ENSPTRG00000002191) #16	CNST (ENSPTRG00000002189) #17	TFB2M (ENSPTRG00000002188) #18	SMYD3 (ENSPTRG00000002187) #19	ENSPTRG00000045241	KIF26B (ENSPTRG00000002185) #20	EFCAB2 (ENSPTRG00000030083) #21	HNRNPU (ENSPTRG00000002182) #22	COX20 (ENSPTRG00000038758) #23	ENSPTRG00000049372 #24	DESI2 (ENSPTRG00000002180) #25	CATSPERE (ENSPTRG00000002179) #26	ADSS2 (ENSPTRG00000002178) #27	C1H1orf100 (ENSPTRG00000002177) #28	ZBTB18 (ENSPTRG00000002175) #29	AKT3 (ENSPTRG00000002174) #30	ENSPTRG00000049151 #31	SDCCAG8 (ENSPTRG00000002173) #32	CEP170 (ENSPTRG00000002172) #33	PLD5 (ENSPTRG00000002169) #34	ENSPTRG00000047329 ##35	MAP1LC3C (ENSPTRG00000023346) #36	ENSPTRG00000050862 #37
Human	MODERN SPECIES		OR2B11 (ENSG00000177535)	NLRP3 (ENSG00000162711)	ZNF496 (ENSG00000162714) #7	VN1R5 (ENSG00000197617) #8	ZNF124 (ENSG00000196418) #11	ZNF669 (ENSG00000188295) #12	ZNF670 (ENSG00000277462) #13	ZNF695 (ENSG00000197472) #14	AHCTF1 (ENSG00000153207) #15	SCCPDH (ENSG00000143653) #16	CNST (ENSG00000162852) #17	TFB2M (ENSG00000162851) #18	SMYD3 (ENSG00000185420) #19	KIF26B (ENSG00000162849) #20	EFCAB2 (ENSG00000203666) #21	HNRNPU (ENSG00000153187) #22	COX20 (ENSG00000203667) #23	ENSG00000284188	DESI2 (ENSG00000121644) #25	CATSPERE (ENSG00000179397) #26	ADSS2 (ENSG00000035687) #27	C1orf100 (ENSG00000173728) #28	ZBTB18 (ENSG00000179456) #29	AKT3 (ENSG00000117020) #30	SDCCAG8 (ENSG00000054282) #32	CEP170 (ENSG00000143702) #33	PLD5 (ENSG00000180287) #34	MAP1LC3C (ENSG00000197769) #36	BECN2 (ENSG00000196289)	EXO1 (ENSG00000174371)	WDR64 (ENSG00000162843)
Gorilla	MODERN SPECIES		NLRP3 (ENSGGOG00000004835)	ZNF496 (ENSGGOG00000001577) #7	VN1R5 (ENSGGOG00000002427) #8	ZNF124 (ENSGGOG00000013838) #11	ENSGGOG00000005146 #12	ZNF670 (ENSGGOG00000027864) #13	ZNF695 (ENSGGOG00000024547) #14	AHCTF1 (ENSGGOG00000034836) #15	SCCPDH (ENSGGOG00000002544) #16	CNST (ENSGGOG00000007386) #17	TFB2M (ENSGGOG00000001095) #18	SMYD3 (ENSGGOG00000034875) #19	ENSGGOG00000011667	KIF26B (ENSGGOG00000010397) #20	ENSGGOG00000040325 #21	HNRNPU (ENSGGOG00000004061) #22	COX20 (ENSGGOG00000028397) #23	ENSGGOG00000040495	DESI2 (ENSGGOG00000009797) #25	CATSPERE (ENSGGOG00000005744) #26	C1orf100 (ENSGGOG00000011106) #28	ADSS2 (ENSGGOG00000011109) #27	ZBTB18 (ENSGGOG00000028442) #29	AKT3 (ENSGGOG00000007722) #30	ENSGGOG00000022126	SDCCAG8 (ENSGGOG00000007709) #32	ENSGGOG00000043649 ##33	ENSGGOG00000028488	ENSGGOG00000007912	PLD5 (ENSGGOG00000011168) #34	MAP1LC3C (ENSGGOG00000000253) #36
Orangutan	MODERN SPECIES		NLRP3 (ENSPPYG00000041121)	ZNF496 (ENSPPYG00000000037) #7	ENSPPYG00000036003 #10	ZNF124 (ENSPPYG00000035862) #11	ENSPPYG00000036256 #12	ZNF670 (ENSPPYG00000000040) #13	ZNF695 (ENSPPYG00000000041) #14	AHCTF1 (ENSPPYG00000000042) #15	SCCPDH (ENSPPYG00000000044) #16	ENSPPYG00000030496	CNST (ENSPPYG00000000045) #17	TFB2M (ENSPPYG00000000046) #18	SMYD3 (ENSPPYG00000000047) #19	KIF26B (ENSPPYG00000000048) #20	EFCAB2 (ENSPPYG00000033790) #21	HNRNPU (ENSPPYG00000000052) #22	COX20 (ENSPPYG00000037954) #23	ENSPPYG00000041762 #24	DESI2 (ENSPPYG00000000055) #25	CATSPERE (ENSPPYG00000000056) #26	ADSS2 (ENSPPYG00000000057) #27	C1orf100 (ENSPPYG00000000058) #28	ZBTB18 (ENSPPYG00000000059) #29	AKT3 (ENSPPYG00000000060) #30	SDCCAG8 (ENSPPYG00000000061) #32	CEP170 (ENSPPYG00000000063) #33	PLD5 (ENSPPYG00000000064) #34	MAP1LC3C (ENSPPYG00000010665) #36	ENSPPYG00000037133 #37	BECN2 (ENSPPYG00000000066)	EXO1 (ENSPPYG00000000067)
Cercopithecidae	ANCESTRAL SPECIES	33	ENSGT00940000161967 #7	ENSGT00950000183206.b.c.a.b.a.a #9	ENSGT00940000154251.A.b.a.b.a #10	ENSGT00940000164793 #11	ENSGT00940000164691.a.b #12	ENSGT00940000164696 #13	ENSGT00940000154251.A.b.a.a #14	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00510000047669.j	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b.o #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158.v #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161436.b #35	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT00940000161967 #7	ENSGT00950000183206.b.c.a.b.a.a #9	ENSGT00940000154251.A.b.a.b.a #10	ENSGT00940000164793 #11	ENSGT00940000164691.a.b #12	ENSGT00940000164696 #13	ENSGT00940000154251.A.b.a.a #14	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00510000047669.j	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b.o #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158.v #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161436.b #35	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676
Vervet Monkey	MODERN SPECIES	17	GCSAML (ENSCSAG00000008984)	OR2C3 (ENSCSAG00000019375)	OR2B11 (ENSCSAG00000019374)	NLRP3 (ENSCSAG00000009000)	ZNF496 (ENSCSAG00000009014) #7	ENSCSAG00000009023 #10	ENSCSAG00000009031	ENSCSAG00000009060	ZNF695 (ENSCSAG00000009076) #14	AHCTF1 (ENSCSAG00000009102) #15	SCCPDH (ENSCSAG00000009117) #16	CNST (ENSCSAG00000009127) #17	TFB2M (ENSCSAG00000009135) #18	KIF26B (ENSCSAG00000009182) #20	EFCAB2 (ENSCSAG00000009206) #21	HNRNPU (ENSCSAG00000009219) #22	COX20 (ENSCSAG00000009227) #23	DESI2 (ENSCSAG00000009236) #25	CATSPERE (ENSCSAG00000009285) #26	ADSS2 (ENSCSAG00000009306) #27	C1orf100 (ENSCSAG00000009313) #28	ZBTB18 (ENSCSAG00000009318) #29	AKT3 (ENSCSAG00000009327) #30	SDCCAG8 (ENSCSAG00000009336) #32	CEP170 (ENSCSAG00000009345) #33	PLD5 (ENSCSAG00000009359) #34	MAP1LC3C (ENSCSAG00000009372) #36	BECN2 (ENSCSAG00000019373)	ENSCSAG00000009385 #36	EXO1 (ENSCSAG00000009399)	WDR64 (ENSCSAG00000009423)
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000161967 #7	ENSGT00950000183206.b.c.a.b.a.a #9	ENSGT00940000154251.A.b.a.b.a #10	ENSGT00940000164793 #11	ENSGT00940000164691.a.b #12	ENSGT00940000164696 #13	ENSGT00940000153165.a.b.a	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00510000047669.j	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b.o #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00910000147430	ENSGT00390000016158.v #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00910000148055	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161436.b #35	ENSGT00940000161852 #36
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000161967 #7	ENSGT00950000183206.b.c.a.b.a.a #9	ENSGT00940000154251.A.b.a.b.a #10	ENSGT00940000164793 #11	ENSGT00940000164691.a.b #12	ENSGT00940000164696 #13	ENSGT00940000153165.a.b.a	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00510000047669.j	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b.o #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00910000147430	ENSGT00390000016158.v #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00910000148055	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00510000047676
Olive baboon	MODERN SPECIES		ENSPANG00000009147 #12	ZNF124 (ENSPANG00000001152) #11	ENSPANG00000050687 #10	ZNF496 (ENSPANG00000001151) #7	AHCTF1 (ENSPANG00000005956) #15	SCCPDH (ENSPANG00000008136) #16	ENSPANG00000042256	ENSPANG00000025211	TFB2M (ENSPANG00000050993) #18	ENSPANG00000037010	ENSPANG00000050627	SMYD3 (ENSPANG00000005527) #19	KIF26B (ENSPANG00000009793) #20	ENSPANG00000049532	EFCAB2 (ENSPANG00000026471) #21	HNRNPU (ENSPANG00000011643) #22	COX20 (ENSPANG00000002384) #23	ENSPANG00000032745	DESI2 (ENSPANG00000012978) #25	CATSPERE (ENSPANG00000029860) #26	ADSS2 (ENSPANG00000006358) #27	ENSPANG00000004992 #28	ZBTB18 (ENSPANG00000021934) #29	ENSPANG00000044679	ENSPANG00000037188	AKT3 (ENSPANG00000010019) #30	SDCCAG8 (ENSPANG00000010168) #32	CEP170 (ENSPANG00000022781) #33	PLD5 (ENSPANG00000005955) #34	ENSPANG00000042045	MAP1LC3C (ENSPANG00000044045) #36
Cercopithecinae_d	ANCESTRAL SPECIES	68	ENSGT00940000161967 #7	ENSGT00950000183206.b.c.a.b.a.a #9	ENSGT00940000154251.A.b.a.b.a #10	ENSGT00940000164793 #11	ENSGT00940000164691.a.b #12	ENSGT00940000164696 #13	ENSGT00940000153165.a.b.a	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00510000047669.j	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b.o #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00910000147430	ENSGT00390000016158.v #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00910000148055	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037
Sooty mangabey	MODERN SPECIES	449					ZNF670 (ENSCATG00000033626) #13	ENSCATG00000037364	AHCTF1 (ENSCATG00000044786) #15	SCCPDH (ENSCATG00000043733) #16	ENSCATG00000020609	CNST (ENSCATG00000045327) #17	TFB2M (ENSCATG00000041118) #18	ENSCATG00000039137 #19	SMYD3 (ENSCATG00000041127) #19	KIF26B (ENSCATG00000040207) #20	ENSCATG00000033734 #21	HNRNPU (ENSCATG00000035273) #22	ENSCATG00000007496	COX20 (ENSCATG00000037050) #23	DESI2 (ENSCATG00000039396) #25	CATSPERE (ENSCATG00000040129) #26	ADSS2 (ENSCATG00000031646) #27	C1orf100 (ENSCATG00000043782) #28	ENSCATG00000003512	ZBTB18 (ENSCATG00000040414) #29	AKT3 (ENSCATG00000033494) #30	ENSCATG00000012672 #31	SDCCAG8 (ENSCATG00000039425) #32	CEP170 (ENSCATG00000031357) #33	PLD5 (ENSCATG00000021605) #34	MAP1LC3C (ENSCATG00000031341) #36	EXO1 (ENSCATG00000006511)
Drill	MODERN SPECIES	807														KIF26B (ENSMLEG00000033132) #20	EFCAB2 (ENSMLEG00000032092) #21	HNRNPU (ENSMLEG00000040141) #22	ENSMLEG00000015197	COX20 (ENSMLEG00000034231) #23	DESI2 (ENSMLEG00000039449) #25	CATSPERE (ENSMLEG00000035016) #26	ADSS2 (ENSMLEG00000036094) #27	C1orf100 (ENSMLEG00000027336) #28	ENSMLEG00000005578	ZBTB18 (ENSMLEG00000023925) #29	AKT3 (ENSMLEG00000042542) #30	ENSMLEG00000041086	SDCCAG8 (ENSMLEG00000008647) #32	CEP170 (ENSMLEG00000029097) #33
Macaca	ANCESTRAL SPECIES		ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00940000154251.A.b.a.b.a #10	ENSGT00940000164793 #11	ENSGT00940000164691.a.b #12	ENSGT00940000164696 #13	ENSGT00940000153165.a.b.a	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00510000047669.j	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b.o #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00910000147430	ENSGT00390000016158.v #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b.d #29	ENSGT00910000148055	ENSGT00940000155092.b.c #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161436.b #35	ENSGT00940000161852.o #36
Macaca_a	ANCESTRAL SPECIES		ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967 #7	ENSGT00940000154251.A.b.a.b.a #10	ENSGT00940000164793 #11	ENSGT00940000164691.a.b #12	ENSGT00940000164696 #13	ENSGT00940000153165.a.b.a	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b.o #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158.v #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b.d #29	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.a.a.b.b.a.a	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.a.b.a.b.b.b.a.a.a.a.b.a.a	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT01100000263539.a.a.b.a.a.a.a.b.b	ENSGT00950000183059.b.a.b #34	ENSGT00940000161436.b #35	ENSGT00940000161852.o #36
Rhesus	MODERN SPECIES		ENSMMUG00000023311 #12	ZNF670 (ENSMMUG00000050290) #13	ENSMMUG00000054567	ENSMMUG00000031191	AHCTF1 (ENSMMUG00000016408) #15	ENSMMUG00000049281	SCCPDH (ENSMMUG00000022208) #16	ENSMMUG00000060928	CNST (ENSMMUG00000011380) #17	ENSMMUG00000059690	TFB2M (ENSMMUG00000055490) #18	SMYD3 (ENSMMUG00000005777) #19	KIF26B (ENSMMUG00000017324) #20	EFCAB2 (ENSMMUG00000011424) #21	ENSMMUG00000053368	HNRNPU (ENSMMUG00000021098) #22	COX20 (ENSMMUG00000031175) #23	ENSMMUG00000062648	DESI2 (ENSMMUG00000022310) #25	CATSPERE (ENSMMUG00000000021) #26	ENSMMUG00000062093	ADSS2 (ENSMMUG00000000016) #27	C1H1orf100 (ENSMMUG00000000015) #28	ZBTB18 (ENSMMUG00000015664) #29	ENSMMUG00000063991	ENSMMUG00000049847	AKT3 (ENSMMUG00000019995) #30	SDCCAG8 (ENSMMUG00000019994) #32	CEP170 (ENSMMUG00000019914) #33	ENSMMUG00000059561	ENSMMUG00000062759
Crab-eating macaque	MODERN SPECIES		OR2B11 (ENSMFAG00000029820)	NLRP3 (ENSMFAG00000038424)	ZNF496 (ENSMFAG00000035433) #7	ENSMFAG00000044188 #10	ZNF124 (ENSMFAG00000041032) #11	ENSMFAG00000003888 #12	ZNF670 (ENSMFAG00000037311) #13	ENSMFAG00000003501	AHCTF1 (ENSMFAG00000045763) #15	SCCPDH (ENSMFAG00000044986) #16	CNST (ENSMFAG00000000416) #17	ENSMFAG00000051929	TFB2M (ENSMFAG00000000959) #18	SMYD3 (ENSMFAG00000045761) #19	EFCAB2 (ENSMFAG00000039610) #21	HNRNPU (ENSMFAG00000037308) #22	COX20 (ENSMFAG00000039162) #23	DESI2 (ENSMFAG00000032549) #25	ENSMFAG00000057921	CATSPERE (ENSMFAG00000033487) #26	ADSS2 (ENSMFAG00000032956) #27	C1orf100 (ENSMFAG00000037345) #28	ZBTB18 (ENSMFAG00000065061) #29	ENSMFAG00000063696	ENSMFAG00000047436	ENSMFAG00000063443	AKT3 (ENSMFAG00000033261) #30	SDCCAG8 (ENSMFAG00000045247) #32	CEP170 (ENSMFAG00000002285) #33	ENSMFAG00000064196	PLD5 (ENSMFAG00000038798) #34
Pig-tailed macaque	MODERN SPECIES	530	ZNF496 (ENSMNEG00000029021) #7	ENSMNEG00000033008 #10	ZNF124 (ENSMNEG00000043642) #11	ZNF670 (ENSMNEG00000033739) #13	ENSMNEG00000045492	AHCTF1 (ENSMNEG00000033706) #15	SCCPDH (ENSMNEG00000031293) #16	ENSMNEG00000038363	CNST (ENSMNEG00000029053) #17	TFB2M (ENSMNEG00000034600) #18	ENSMNEG00000040857	SMYD3 (ENSMNEG00000034852) #19	KIF26B (ENSMNEG00000043221) #20	ENSMNEG00000033617 #21	ENSMNEG00000027013	HNRNPU (ENSMNEG00000043645) #22	ENSMNEG00000039700	COX20 (ENSMNEG00000016736) #23	DESI2 (ENSMNEG00000033512) #25	CATSPERE (ENSMNEG00000026147) #26	ADSS2 (ENSMNEG00000035852) #27	C1orf100 (ENSMNEG00000031871) #28	ENSMNEG00000016127	ZBTB18 (ENSMNEG00000024588) #29	AKT3 (ENSMNEG00000042335) #30	SDCCAG8 (ENSMNEG00000029839) #32	CEP170 (ENSMNEG00000016347) #33	PLD5 (ENSMNEG00000041098) #34	EXO1 (ENSMNEG00000032416)	WDR64 (ENSMNEG00000043406)	ENSMNEG00000027552
Rhinopithecus	ANCESTRAL SPECIES	63													ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158.v #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b
Golden snub-nosed monkey	MODERN SPECIES	2836															EFCAB2 (ENSRROG00000022255) #21	HNRNPU (ENSRROG00000041642) #22	COX20 (ENSRROG00000032327) #23	DESI2 (ENSRROG00000036662) #25	CATSPERE (ENSRROG00000028619) #26	ADSS2 (ENSRROG00000035892) #27	C1orf100 (ENSRROG00000043026) #28	ZBTB18 (ENSRROG00000040861) #29	AKT3 (ENSRROG00000034576) #30	SDCCAG8 (ENSRROG00000031685) #32	CEP170 (ENSRROG00000038486) #33
Black snub-nosed monkey	MODERN SPECIES	319													SMYD3 (ENSRBIG00000045007) #19	KIF26B (ENSRBIG00000037736) #20	EFCAB2 (ENSRBIG00000029218) #21	HNRNPU (ENSRBIG00000031519) #22	COX20 (ENSRBIG00000032427) #23	ENSRBIG00000030032	DESI2 (ENSRBIG00000032083) #25	CATSPERE (ENSRBIG00000041705) #26	ADSS2 (ENSRBIG00000029921) #27	C1orf100 (ENSRBIG00000036507) #28	ZBTB18 (ENSRBIG00000042576) #29
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000156546.k #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000156546.k #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000156546.k #22
Bolivian squirrel monkey	MODERN SPECIES	62	CAMK2N2 (ENSSBOG00000025366)	ECE2 (ENSSBOG00000032623)	ALG3 (ENSSBOG00000029414)	VWA5B2 (ENSSBOG00000026464)	ABCF3 (ENSSBOG00000029094)	ENSSBOG00000033126	DVL3 (ENSSBOG00000035979)	EIF2B5 (ENSSBOG00000028500)	HTR3E (ENSSBOG00000021223)	ENSSBOG00000012724	HTR3C (ENSSBOG00000029560)	ENSSBOG00000013776	ABCC5 (ENSSBOG00000021176)	PARL (ENSSBOG00000023148)	ENSSBOG00000026916	ENSSBOG00000029528 #22	YEATS2 (ENSSBOG00000024142)	KLHL24 (ENSSBOG00000034313)	KLHL6 (ENSSBOG00000020503)	MCF2L2 (ENSSBOG00000029425)	ENSSBOG00000021035	MCCC1 (ENSSBOG00000026219)	DCUN1D1 (ENSSBOG00000028062)	ATP11B (ENSSBOG00000025969)	ENSSBOG00000026921	FXR1 (ENSSBOG00000033567)	CCDC39 (ENSSBOG00000027250)	TTC14 (ENSSBOG00000024686)	PEX5L (ENSSBOG00000027789)	USP13 (ENSSBOG00000026837)	ENSSBOG00000029840
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	24									ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546.l.a #22	ENSGT00390000016158.w.a #23	ENSGT00910000147125	ENSGT00390000016158.w.b #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b.fb.a #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676
Cebidae	ANCESTRAL SPECIES	23	ENSGT00940000160371	ENSGT00940000162155	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000153092.a.a.c.b	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510	ENSGT00940000163997	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546.l.a #22	ENSGT00390000016158.w.a #23	ENSGT00910000147125	ENSGT00390000016158.w.b #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b.fb.a #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00940000160371	ENSGT00940000162155	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000153092.a.a.c.b	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT00390000009510	ENSGT00940000163997	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546.l.a #22	ENSGT00390000016158.w.a #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b.fb.a #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b
Capuchin	MODERN SPECIES	75	H2AW (ENSCCAG00000012315)	H2BU1 (ENSCCAG00000015023)	ENSCCAG00000012567	RNF187 (ENSCCAG00000028705)	ENSCCAG00000025344	ENSCCAG00000018435	AHCTF1 (ENSCCAG00000023436) #15	SCCPDH (ENSCCAG00000022176) #16	ENSCCAG00000020404	CNST (ENSCCAG00000038009) #17	TFB2M (ENSCCAG00000028811) #18	SMYD3 (ENSCCAG00000021189) #19	ENSCCAG00000021180	KIF26B (ENSCCAG00000031008) #20	ENSCCAG00000032757 #21	ENSCCAG00000037859 #22	ENSCCAG00000035009 #23	ENSCCAG00000029940	DESI2 (ENSCCAG00000032727) #25	CATSPERE (ENSCCAG00000024353) #26	ADSS (ENSCCAG00000019985) #27	C1orf100 (ENSCCAG00000026529) #28	ENSCCAG00000034313	ENSCCAG00000012153	ZBTB18 (ENSCCAG00000027386) #29	AKT3 (ENSCCAG00000022873) #30	SDCCAG8 (ENSCCAG00000024200) #32	ENSCCAG00000035019	CEP170 (ENSCCAG00000030281) #33	PLD5 (ENSCCAG00000033339) #34	MAP1LC3C (ENSCCAG00000015684) #36
Bolivian squirrel monkey	MODERN SPECIES	114	IBA57 (ENSSBOG00000022497)	OBSCN (ENSSBOG00000032380)	TRIM11 (ENSSBOG00000005125)	TRIM17 (ENSSBOG00000030344)	H2AC25 (ENSSBOG00000019953)	H2BC26 (ENSSBOG00000008375)	ENSSBOG00000019925	AHCTF1 (ENSSBOG00000004404) #15	SCCPDH (ENSSBOG00000021995) #16	CNST (ENSSBOG00000028424) #17	TFB2M (ENSSBOG00000033950) #18	ENSSBOG00000035160	SMYD3 (ENSSBOG00000026164) #19	KIF26B (ENSSBOG00000034697) #20	EFCAB2 (ENSSBOG00000034755) #21	HNRNPU (ENSSBOG00000026500) #22	COX20 (ENSSBOG00000029804) #23	DESI2 (ENSSBOG00000021690) #25	CATSPERE (ENSSBOG00000034772) #26	ENSSBOG00000019992	ENSSBOG00000021320 #27	C1orf100 (ENSSBOG00000025161) #28	ZBTB18 (ENSSBOG00000023273) #29	AKT3 (ENSSBOG00000029542) #30	SDCCAG8 (ENSSBOG00000017248) #32	CEP170 (ENSSBOG00000026709) #33	PLD5 (ENSSBOG00000031034) #34	MAP1LC3C (ENSSBOG00000032837) #36	EXO1 (ENSSBOG00000023658)	WDR64 (ENSSBOG00000024836)	ENSSBOG00000031868
Marmoset	MODERN SPECIES	10	CNST (ENSCJAG00000016834) #17	TFB2M (ENSCJAG00000016845) #18	ENSCJAG00000055715	SMYD3 (ENSCJAG00000016856) #19	ENSCJAG00000079381	ENSCJAG00000083805	ENSCJAG00000073352	ENSCJAG00000055416	ENSCJAG00000070862	KIF26B (ENSCJAG00000016866) #20	EFCAB2 (ENSCJAG00000016907) #21	ENSCJAG00000075122	ENSCJAG00000085469	ENSCJAG00000086913	ENSCJAG00000076624	HNRNPU (ENSCJAG00000016914) #22	ENSCJAG00000048443 #23	DESI2 (ENSCJAG00000017043) #25	CATSPERE (ENSCJAG00000017054) #26	ADSS2 (ENSCJAG00000017069) #27	C1orf100 (ENSCJAG00000017074) #28	ENSCJAG00000085383	ZBTB18 (ENSCJAG00000040735) #29	ENSCJAG00000076464	AKT3 (ENSCJAG00000017090) #30	ENSCJAG00000086445	SDCCAG8 (ENSCJAG00000017112) #32	CEP170 (ENSCJAG00000017155) #33	ENSCJAG00000077919	PLD5 (ENSCJAG00000017218) #34	MAP1LC3C (ENSCJAG00000080978) #36
Mas night monkey	MODERN SPECIES	1115							AHCTF1 (ENSANAG00000027717) #15	SCCPDH (ENSANAG00000017200) #16	ENSANAG00000035995	CNST (ENSANAG00000022435) #17	TFB2M (ENSANAG00000038040) #18	ENSANAG00000037652	SMYD3 (ENSANAG00000032109) #19	KIF26B (ENSANAG00000030464) #20	EFCAB2 (ENSANAG00000033282) #21	ENSANAG00000033895 #22	ENSANAG00000029422 #23	ENSANAG00000028263	DESI2 (ENSANAG00000036524) #25	CATSPERE (ENSANAG00000038006) #26	ENSANAG00000033603 #27	C1orf100 (ENSANAG00000029438) #28	ZBTB18 (ENSANAG00000037877) #29	AKT3 (ENSANAG00000031454) #30	ENSANAG00000022761	SDCCAG8 (ENSANAG00000022837) #32	CEP170 (ENSANAG00000023200) #33	PLD5 (ENSANAG00000022321) #34	MAP1LC3C (ENSANAG00000021613) #36	EXO1 (ENSANAG00000020445)	WDR64 (ENSANAG00000022900)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000156546.l.b #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000156546.l.b #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000156546.l.b #22
Capuchin	MODERN SPECIES	111	PSMD2 (ENSCCAG00000033966)	CAMK2N2 (ENSCCAG00000035659)	ECE2 (ENSCCAG00000023381)	ALG3 (ENSCCAG00000025533)	VWA5B2 (ENSCCAG00000032876)	ABCF3 (ENSCCAG00000027906)	AP2M1 (ENSCCAG00000025069)	DVL3 (ENSCCAG00000035355)	EIF2B5 (ENSCCAG00000028693)	HTR3E (ENSCCAG00000037415)	HTR3C (ENSCCAG00000031177)	ENSCCAG00000031577	ABCC5 (ENSCCAG00000025137)	PARL (ENSCCAG00000031887)	MAP6D1 (ENSCCAG00000036644)	ENSCCAG00000023201 #22	YEATS2 (ENSCCAG00000031021)	KLHL24 (ENSCCAG00000036179)	KLHL6 (ENSCCAG00000019228)	ENSCCAG00000030618	MCF2L2 (ENSCCAG00000019185)	ENSCCAG00000024140	ENSCCAG00000023260
Mas night monkey	MODERN SPECIES	793	ECE2 (ENSANAG00000036188)	CAMK2N2 (ENSANAG00000026673)	ALG3 (ENSANAG00000036858)	VWA5B2 (ENSANAG00000023436)	ABCF3 (ENSANAG00000032695)	AP2M1 (ENSANAG00000035232)	DVL3 (ENSANAG00000020734)	EIF2B5 (ENSANAG00000030694)	HTR3E (ENSANAG00000037618)	HTR3C (ENSANAG00000038263)	ABCC5 (ENSANAG00000022138)	ENSANAG00000032750	ENSANAG00000028369	MAP6D1 (ENSANAG00000031904)	YEATS2 (ENSANAG00000034729)	ENSANAG00000032967 #22	KLHL24 (ENSANAG00000030957)	KLHL6 (ENSANAG00000034934)	MCF2L2 (ENSANAG00000030096)	LAMP3 (ENSANAG00000021411)	MCCC1 (ENSANAG00000028235)	ENSANAG00000020880	ATP11B (ENSANAG00000033054)	ENSANAG00000018148	ENSANAG00000023464	SOX2 (ENSANAG00000000047)	DNAJC19 (ENSANAG00000023901)	FXR1 (ENSANAG00000026001)
Tarsier	MODERN SPECIES	5817												KIF26B (ENSTSYG00000025530) #20	ENSTSYG00000034697	ENSTSYG00000028115	EFCAB2 (ENSTSYG00000006254) #21	HNRNPU (ENSTSYG00000005655) #22	COX20 (ENSTSYG00000005644) #23	HSD17B12 (ENSTSYG00000000731)
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Lemuriformes	ANCESTRAL SPECIES	6	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Lemuriformes_a	ANCESTRAL SPECIES	113	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	304	PARP1 (ENSPCOG00000016918)	STUM (ENSPCOG00000013568)	ITPKB (ENSPCOG00000028557)	PSEN2 (ENSPCOG00000013955)	COQ8A (ENSPCOG00000022285)	CDC42BPA (ENSPCOG00000027076)	AHCTF1 (ENSPCOG00000027036) #15	SCCPDH (ENSPCOG00000019439) #16	CNST (ENSPCOG00000014228) #17	ENSPCOG00000025467	TFB2M (ENSPCOG00000017595) #18	ENSPCOG00000018802	SMYD3 (ENSPCOG00000019858) #19	KIF26B (ENSPCOG00000022607) #20	EFCAB2 (ENSPCOG00000019391) #21	ENSPCOG00000018655 #22	ENSPCOG00000020107 #23	ENSPCOG00000023802	DESI2 (ENSPCOG00000026547) #25	CATSPERE (ENSPCOG00000011368) #26	ADSS2 (ENSPCOG00000024381) #27	C1orf100 (ENSPCOG00000005357) #28	ZBTB18 (ENSPCOG00000027655) #29	AKT3 (ENSPCOG00000026902) #30	SDCCAG8 (ENSPCOG00000023982) #32	CEP170 (ENSPCOG00000024128) #33	PLD5 (ENSPCOG00000013665) #34	MAP1LC3C (ENSPCOG00000017365) #36	EXO1 (ENSPCOG00000003699)	WDR64 (ENSPCOG00000013811)	OPN3 (ENSPCOG00000025862)
Coquerels sifaka	MODERN SPECIES	660																ENSPCOG00000003883 #22
Greater bamboo lemur	MODERN SPECIES	75										SCCPDH (ENSPSMG00000021861) #16	CNST (ENSPSMG00000021909) #17	TFB2M (ENSPSMG00000021950) #18	SMYD3 (ENSPSMG00000021959) #19	KIF26B (ENSPSMG00000021984) #20	EFCAB2 (ENSPSMG00000021989) #21	HNRNPU (ENSPSMG00000022205) #22	COX20 (ENSPSMG00000022388) #23	ENSPSMG00000022414 #25	CATSPERE (ENSPSMG00000022446) #26	ADSS2 (ENSPSMG00000022472) #27	C1orf100 (ENSPSMG00000022478) #28	ENSPSMG00000022482	ZBTB18 (ENSPSMG00000022492) #29	AKT3 (ENSPSMG00000022616) #30	SDCCAG8 (ENSPSMG00000022738) #32	CEP170 (ENSPSMG00000022916) #33	PLD5 (ENSPSMG00000023045) #34	MAP1LC3C (ENSPSMG00000023056) #36	BECN2 (ENSPSMG00000023064)	EXO1 (ENSPSMG00000023090)	WDR64 (ENSPSMG00000023125)
Mouse lemur	MODERN SPECIES	8	LIN9 (ENSMICG00000017073)	PARP1 (ENSMICG00000017076)	STUM (ENSMICG00000042487)	ITPKB (ENSMICG00000038100)	PSEN2 (ENSMICG00000013427)	COQ8A (ENSMICG00000013440)	CDC42BPA (ENSMICG00000013466)	AHCTF1 (ENSMICG00000014617) #15	ENSMICG00000034974	SCCPDH (ENSMICG00000014588) #16	CNST (ENSMICG00000036496) #17	TFB2M (ENSMICG00000016790) #18	SMYD3 (ENSMICG00000005665) #19	KIF26B (ENSMICG00000005649) #20	EFCAB2 (ENSMICG00000041551) #21	HNRNPU (ENSMICG00000004616) #22	COX20 (ENSMICG00000043634) #23	DESI2 (ENSMICG00000034096) #25	ENSMICG00000030505	CATSPERE (ENSMICG00000007626) #26	ADSS2 (ENSMICG00000035421) #27	C1orf100 (ENSMICG00000042924) #28	ZBTB18 (ENSMICG00000007600) #29	AKT3 (ENSMICG00000015514) #30	SDCCAG8 (ENSMICG00000015485) #32	CEP170 (ENSMICG00000011831) #33	PLD5 (ENSMICG00000003488) #34	MAP1LC3C (ENSMICG00000041705) #36	EXO1 (ENSMICG00000042831)	WDR64 (ENSMICG00000003466)	OPN3 (ENSMICG00000003465)
Bushbaby	MODERN SPECIES	256	AASDH (ENSOGAG00000003569)	CRACD (ENSOGAG00000026030)	CEP135 (ENSOGAG00000014642)	ITPKB (ENSOGAG00000012547)	ENSOGAG00000034519	PSEN2 (ENSOGAG00000016839)	COQ8A (ENSOGAG00000016671)	CDC42BPA (ENSOGAG00000016679)	AHCTF1 (ENSOGAG00000003786) #15	SCCPDH (ENSOGAG00000007830) #16	CNST (ENSOGAG00000007827) #17	TFB2M (ENSOGAG00000007823) #18	ENSOGAG00000030964 #19	ENSOGAG00000010891 #19	KIF26B (ENSOGAG00000027006) #20	HNRNPU (ENSOGAG00000014024) #22	CATSPERE (ENSOGAG00000006168) #26	ADSS2 (ENSOGAG00000006165) #27	C1orf100 (ENSOGAG00000006163) #28	ZBTB18 (ENSOGAG00000013580) #29	AKT3 (ENSOGAG00000016417) #30	SDCCAG8 (ENSOGAG00000016400) #32	CEP170 (ENSOGAG00000024170) #33	PLD5 (ENSOGAG00000032441) #34	MAP1LC3C (ENSOGAG00000005130) #36	ENSOGAG00000025244
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Glires	ANCESTRAL SPECIES		ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Lagomorpha	ANCESTRAL SPECIES	300											ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23
Rabbit	MODERN SPECIES	7	ENSOCUG00000031333	ENSOCUG00000039038	CDC42BPA (ENSOCUG00000017317)	ENSOCUG00000032783	COQ8A (ENSOCUG00000017305)	PSEN2 (ENSOCUG00000021898)	ENSOCUG00000035998	ENSOCUG00000011370	AHCTF1 (ENSOCUG00000014500) #15	ENSOCUG00000035934	ENSOCUG00000004067 #17	ENSOCUG00000013727	SMYD3 (ENSOCUG00000008229) #19	KIF26B (ENSOCUG00000008220) #20	EFCAB2 (ENSOCUG00000029593) #21	HNRNPU (ENSOCUG00000014469) #22	ENSOCUG00000039107 #23	ENSOCUG00000023897	ENSOCUG00000038233	ENSOCUG00000033583	DESI2 (ENSOCUG00000012551) #25	CATSPERE (ENSOCUG00000012540) #26	ENSOCUG00000017531	ADSS2 (ENSOCUG00000013982) #27	C1orf100 (ENSOCUG00000030082) #28	ZBTB18 (ENSOCUG00000007968) #29	AKT3 (ENSOCUG00000015901) #30	ENSOCUG00000037452	SDCCAG8 (ENSOCUG00000015881) #32	CEP170 (ENSOCUG00000000173) #33	PLD5 (ENSOCUG00000009192) #34
Pika	MODERN SPECIES	6720																HNRNPU (ENSOPRG00000004551) #22	COX20 (ENSOPRG00000004534) #23
Rodentia	ANCESTRAL SPECIES		ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00660000097201	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676
Rodentia_B	ANCESTRAL SPECIES	45	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00660000097201	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b
Myomorpha	ANCESTRAL SPECIES	16	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00660000097201	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b
Muroidea	ANCESTRAL SPECIES	9	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00950000182994.A.n.b
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00950000182994.A.n.b	ENSGT00390000000747
Golden Hamster	MODERN SPECIES	697	Stum (ENSMAUG00000010054)	Itpkb (ENSMAUG00000013424)	Psen2 (ENSMAUG00000014629)	Coq8a (ENSMAUG00000016955)	Cdc42bpa (ENSMAUG00000010864)	ENSMAUG00000018123	Ahctf1 (ENSMAUG00000007505) #15	Kif28 (ENSMAUG00000011576)	Sccpdh (ENSMAUG00000014050) #16	Cnst (ENSMAUG00000014643) #17	Tfb2m (ENSMAUG00000015170) #18	ENSMAUG00000014687	ENSMAUG00000015084 #19	Kif26b (ENSMAUG00000000950) #20	Efcab2 (ENSMAUG00000002894) #21	Hnrnpu (ENSMAUG00000008842) #22	Cox20 (ENSMAUG00000009696) #23	Desi2 (ENSMAUG00000015341) #25	Adss (ENSMAUG00000017188) #27	1700016C15Rik (ENSMAUG00000020005) #28	Zbtb18 (ENSMAUG00000020134) #29	Akt3 (ENSMAUG00000016204) #30	Sdccag8 (ENSMAUG00000000358) #32	ENSMAUG00000001243 #33	ENSMAUG00000001856 #33	Pld5 (ENSMAUG00000006656) #34	ENSMAUG00000017315	Wdr64 (ENSMAUG00000000597)	Opn3 (ENSMAUG00000010182)	Chml (ENSMAUG00000011591)	Kmo (ENSMAUG00000000461)
Chinese hamster chok1gshd	MODERN SPECIES	2	Itpkb (ENSCGRG00001024584)	Psen2 (ENSCGRG00001018733)	Coq8a (ENSCGRG00001022055)	Cdc42bpa (ENSCGRG00001019928)	Ahctf1 (ENSCGRG00001015843) #15	Kif28 (ENSCGRG00001022967)	ENSCGRG00001014096	ENSCGRG00001016196 #16	Cnst (ENSCGRG00001019670) #17	Tfb2m (ENSCGRG00001000953) #18	ENSCGRG00001003395	Smyd3 (ENSCGRG00001018690) #19	ENSCGRG00001024111	Kif26b (ENSCGRG00001021166) #20	Efcab2 (ENSCGRG00001014735) #21	Hnrnpu (ENSCGRG00001020525) #22	Cox20 (ENSCGRG00001024606) #23	Desi2 (ENSCGRG00001024954) #25	ENSCGRG00001002328	ENSCGRG00001025052	ADSS (ENSCGRG00001007265) #27	1700016C15Rik (ENSCGRG00001021462) #28	Zbtb18 (ENSCGRG00001000848) #29	Akt3 (ENSCGRG00001014427) #30	ENSCGRG00001022350	Sdccag8 (ENSCGRG00001012298) #32	Cep170 (ENSCGRG00001008216) #33	Pld5 (ENSCGRG00001018809) #34	Becn2 (ENSCGRG00001004210)	Exo1 (ENSCGRG00001014562)	Wdr64 (ENSCGRG00001024578)
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000000747
Prairie vole	MODERN SPECIES	14	Lin9 (ENSMOCG00000021496)	Parp1 (ENSMOCG00000014315)	Stum (ENSMOCG00000020677)	Itpkb (ENSMOCG00000002630)	Psen2 (ENSMOCG00000021854)	Coq8a (ENSMOCG00000022622)	Cdc42bpa (ENSMOCG00000019771)	Ahctf1 (ENSMOCG00000004774) #15	Kif28 (ENSMOCG00000022053)	Sccpdh (ENSMOCG00000017380) #16	Cnst (ENSMOCG00000006613) #17	Tfb2m (ENSMOCG00000016864) #18	Smyd3 (ENSMOCG00000019317) #19	Kif26b (ENSMOCG00000018386) #20	Efcab2 (ENSMOCG00000016106) #21	Hnrnpu (ENSMOCG00000015623) #22	Cox20 (ENSMOCG00000020586) #23	Desi2 (ENSMOCG00000017452) #25	ENSMOCG00000017731	Adss (ENSMOCG00000021076) #27	1700016C15Rik (ENSMOCG00000022902) #28	Zbtb18 (ENSMOCG00000018289) #29	Akt3 (ENSMOCG00000010696) #30	Sdccag8 (ENSMOCG00000022174) #32	ENSMOCG00000007828	ENSMOCG00000002769 #33	ENSMOCG00000018239 #33	ENSMOCG00000020684	Pld5 (ENSMOCG00000012598) #34	ENSMOCG00000011680
Northern American deer mouse	MODERN SPECIES	2	Parp1 (ENSPEMG00000020230)	Stum (ENSPEMG00000000087)	Itpkb (ENSPEMG00000000832)	Psen2 (ENSPEMG00000006562)	Coq8a (ENSPEMG00000010057)	Cdc42bpa (ENSPEMG00000016582)	Ahctf1 (ENSPEMG00000000305) #15	ENSPEMG00000016591	Kif28 (ENSPEMG00000014020)	Sccpdh (ENSPEMG00000017539) #16	Cnst (ENSPEMG00000018492) #17	Tfb2m (ENSPEMG00000018713) #18	Smyd3 (ENSPEMG00000002180) #19	Kif26b (ENSPEMG00000007146) #20	ENSPEMG00000008954 #21	Hnrnpu (ENSPEMG00000009568) #22	ENSPEMG00000029548	Cox20 (ENSPEMG00000010346) #23	Desi2 (ENSPEMG00000010913) #25	ENSPEMG00000024531 #26	Adss (ENSPEMG00000012013) #27	Zbtb18 (ENSPEMG00000025154) #29	ENSPEMG00000013477	Akt3 (ENSPEMG00000019381) #30	ENSPEMG00000028582	Sdccag8 (ENSPEMG00000019543) #32	Cep170 (ENSPEMG00000020234) #33	Pld5 (ENSPEMG00000020103) #34	Becn2 (ENSPEMG00000016424)	Exo1 (ENSPEMG00000019110)	ENSPEMG00000027400
Murinae	DUPLICATION
Murinae	ANCESTRAL SPECIES	11	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546.d #22	ENSGT01050000248390	ENSGT00940000156546.c #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b
Mus	ANCESTRAL SPECIES	5	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546.c #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00860000135936	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546.c #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00730000111185.n.b	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b
Ryukyu mouse	MODERN SPECIES		Stum (MGP_CAROLIEiJ_G0014977)	Itpkb (MGP_CAROLIEiJ_G0014976)	Psen2 (MGP_CAROLIEiJ_G0014975)	Coq8a (MGP_CAROLIEiJ_G0014974)	Cdc42bpa (MGP_CAROLIEiJ_G0014973)	MGP_CAROLIEiJ_G0014972	Ahctf1 (MGP_CAROLIEiJ_G0014971) #15	Kif28 (MGP_CAROLIEiJ_G0014970)	Sccpdh (MGP_CAROLIEiJ_G0014969) #16	Cnst (MGP_CAROLIEiJ_G0014968) #17	MGP_CAROLIEiJ_G0014967 #18	MGP_CAROLIEiJ_G0014966 #18	Smyd3 (MGP_CAROLIEiJ_G0014965) #19	Kif26b (MGP_CAROLIEiJ_G0014964) #20	Efcab2 (MGP_CAROLIEiJ_G0014963) #21	Hnrnpu (MGP_CAROLIEiJ_G0014962) #22	MGP_CAROLIEiJ_G0014961 #22	Cox20 (MGP_CAROLIEiJ_G0014960) #23	Desi2 (MGP_CAROLIEiJ_G0014959) #25	MGP_CAROLIEiJ_G0014958	Adss (MGP_CAROLIEiJ_G0014957) #27	1700016C15Rik (MGP_CAROLIEiJ_G0014956) #28	Zbtb18 (MGP_CAROLIEiJ_G0014955) #29	Akt3 (MGP_CAROLIEiJ_G0014954) #30	Sdccag8 (MGP_CAROLIEiJ_G0014953) #32	Cep170 (MGP_CAROLIEiJ_G0014952) #33	Rbm8a2 (MGP_CAROLIEiJ_G0014951)	Pld5 (MGP_CAROLIEiJ_G0014950) #34	Becn2 (MGP_CAROLIEiJ_G0014949)	Exo1 (MGP_CAROLIEiJ_G0014948)	Wdr64 (MGP_CAROLIEiJ_G0014947)
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00860000135936	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546.c #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00730000111185.n.b	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b
Mouse	MODERN SPECIES		Lin9 (ENSMUSG00000058729)	Parp1 (ENSMUSG00000026496)	Stum (ENSMUSG00000053963)	Itpkb (ENSMUSG00000038855)	Psen2 (ENSMUSG00000010609)	Coq8a (ENSMUSG00000026489)	Cdc42bpa (ENSMUSG00000026490)	Ahctf1 (ENSMUSG00000026491) #15	Kif28 (ENSMUSG00000087236)	Sccpdh (ENSMUSG00000038936) #16	Cnst (ENSMUSG00000038949) #17	Tfb2m (ENSMUSG00000026492) #18	Smyd3 (ENSMUSG00000055067) #19	Kif26b (ENSMUSG00000026494) #20	Efcab2 (ENSMUSG00000026495) #21	Hnrnpu (ENSMUSG00000039630) #22	Cox20 (ENSMUSG00000026500) #23	Desi2 (ENSMUSG00000026502) #25	Catspere2 (ENSMUSG00000091476) #26	Catspere1 (ENSMUSG00000102483) #26	Adss (ENSMUSG00000015961) #27	1700016C15Rik (ENSMUSG00000015962) #28	Zbtb18 (ENSMUSG00000063659) #29	Akt3 (ENSMUSG00000019699) #30	Sdccag8 (ENSMUSG00000026504) #32	Cep170 (ENSMUSG00000057335) #33	Rbm8a2 (ENSMUSG00000078184)	Pld5 (ENSMUSG00000055214) #34	Becn2 (ENSMUSG00000104158)	Exo1 (ENSMUSG00000039748)	Wdr64 (ENSMUSG00000026523)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00860000135936	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546.c #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b	ENSGT00390000000747
spretus	MODERN SPECIES		Stum (MGP_SPRETEiJ_G0015776)	Itpkb (MGP_SPRETEiJ_G0015775)	Psen2 (MGP_SPRETEiJ_G0015774)	Coq8a (MGP_SPRETEiJ_G0015773)	Cdc42bpa (MGP_SPRETEiJ_G0015772)	MGP_SPRETEiJ_G0015771	Ahctf1 (MGP_SPRETEiJ_G0015770) #15	Kif28 (MGP_SPRETEiJ_G0015769)	Sccpdh (MGP_SPRETEiJ_G0015768) #16	Cnst (MGP_SPRETEiJ_G0015767) #17	MGP_SPRETEiJ_G0015766 #18	MGP_SPRETEiJ_G0015765 #18	Smyd3 (MGP_SPRETEiJ_G0015764) #19	Kif26b (MGP_SPRETEiJ_G0015763) #20	Efcab2 (MGP_SPRETEiJ_G0015762) #21	Hnrnpu (MGP_SPRETEiJ_G0015761) #22	MGP_SPRETEiJ_G0015760 #22	Cox20 (MGP_SPRETEiJ_G0015759) #23	Desi2 (MGP_SPRETEiJ_G0015758) #25	Adss (MGP_SPRETEiJ_G0015757) #27	1700016C15Rik (MGP_SPRETEiJ_G0015756) #28	Zbtb18 (MGP_SPRETEiJ_G0015755) #29	Akt3 (MGP_SPRETEiJ_G0015754) #30	Sdccag8 (MGP_SPRETEiJ_G0015753) #32	Cep170 (MGP_SPRETEiJ_G0015752) #33	MGP_SPRETEiJ_G0015751	Pld5 (MGP_SPRETEiJ_G0015750) #34	Becn2 (MGP_SPRETEiJ_G0015749)	Exo1 (MGP_SPRETEiJ_G0015748)	Wdr64 (MGP_SPRETEiJ_G0015747)	Chml (MGP_SPRETEiJ_G0015746)
Steppe mouse	MODERN SPECIES	3304	Parp1 (ENSMSIG00000007405)	Stum (ENSMSIG00000007366)	Itpkb (ENSMSIG00000007328)	Psen2 (ENSMSIG00000007254)	Coq8a (ENSMSIG00000007186)	Cdc42bpa (ENSMSIG00000006204)	ENSMSIG00000006134	Ahctf1 (ENSMSIG00000005983) #15	Kif28 (ENSMSIG00000005729)	ENSMSIG00000005652 #16	Cnst (ENSMSIG00000005608) #17	Tfb2m (ENSMSIG00000005588) #18	Smyd3 (ENSMSIG00000005471) #19	Kif26b (ENSMSIG00000005393) #20	Efcab2 (ENSMSIG00000005321) #21	Hnrnpu (ENSMSIG00000005250) #22	Cox20 (ENSMSIG00000005230) #23	ENSMSIG00000005220	Desi2 (ENSMSIG00000005194) #25	ENSMSIG00000005189
Shrew mouse	MODERN SPECIES	18	Stum (MGP_PahariEiJ_G0028208)	Itpkb (MGP_PahariEiJ_G0028207)	Psen2 (MGP_PahariEiJ_G0028206)	Coq8a (MGP_PahariEiJ_G0028205)	Cdc42bpa (MGP_PahariEiJ_G0028204)	MGP_PahariEiJ_G0028203	MGP_PahariEiJ_G0028202 #15	Kif28 (MGP_PahariEiJ_G0028201)	Sccpdh (MGP_PahariEiJ_G0028200) #16	Cnst (MGP_PahariEiJ_G0028199) #17	MGP_PahariEiJ_G0028198 #18	MGP_PahariEiJ_G0028197 #18	Smyd3 (MGP_PahariEiJ_G0028196) #19	Kif26b (MGP_PahariEiJ_G0028195) #20	Efcab2 (MGP_PahariEiJ_G0028194) #21	Hnrnpu (MGP_PahariEiJ_G0028193) #22	MGP_PahariEiJ_G0028192 #22	Cox20 (MGP_PahariEiJ_G0028191) #23	MGP_PahariEiJ_G0028190 #25	Adss (MGP_PahariEiJ_G0028189) #27	1700016C15Rik (MGP_PahariEiJ_G0028188) #28	Zbtb18 (MGP_PahariEiJ_G0028187) #29	Akt3 (MGP_PahariEiJ_G0028186) #30	Sdccag8 (MGP_PahariEiJ_G0028185) #32	Cep170 (MGP_PahariEiJ_G0028184) #33	Pld5 (MGP_PahariEiJ_G0028183) #34	Becn2 (MGP_PahariEiJ_G0028182)	Exo1 (MGP_PahariEiJ_G0028181)	Wdr64 (MGP_PahariEiJ_G0028180)	Chml (MGP_PahariEiJ_G0028179)	Opn3 (MGP_PahariEiJ_G0028178)
Murinae	ANCESTRAL SPECIES	11	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546.d #22	ENSGT01050000248390	ENSGT00940000156546.c #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Mus	ANCESTRAL SPECIES																	ENSGT00940000156546.d #22
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000156546.d #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000156546.d #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000156546.d #22
spretus	MODERN SPECIES		Itpkb (MGP_SPRETEiJ_G0015775)	Psen2 (MGP_SPRETEiJ_G0015774)	Coq8a (MGP_SPRETEiJ_G0015773)	Cdc42bpa (MGP_SPRETEiJ_G0015772)	MGP_SPRETEiJ_G0015771	Ahctf1 (MGP_SPRETEiJ_G0015770) #15	Kif28 (MGP_SPRETEiJ_G0015769)	Sccpdh (MGP_SPRETEiJ_G0015768) #16	Cnst (MGP_SPRETEiJ_G0015767) #17	MGP_SPRETEiJ_G0015766 #18	MGP_SPRETEiJ_G0015765 #18	Smyd3 (MGP_SPRETEiJ_G0015764) #19	Kif26b (MGP_SPRETEiJ_G0015763) #20	Efcab2 (MGP_SPRETEiJ_G0015762) #21	Hnrnpu (MGP_SPRETEiJ_G0015761) #22	MGP_SPRETEiJ_G0015760 #22	Cox20 (MGP_SPRETEiJ_G0015759) #23	Desi2 (MGP_SPRETEiJ_G0015758) #25	Adss (MGP_SPRETEiJ_G0015757) #27	1700016C15Rik (MGP_SPRETEiJ_G0015756) #28	Zbtb18 (MGP_SPRETEiJ_G0015755) #29	Akt3 (MGP_SPRETEiJ_G0015754) #30	Sdccag8 (MGP_SPRETEiJ_G0015753) #32	Cep170 (MGP_SPRETEiJ_G0015752) #33	MGP_SPRETEiJ_G0015751	Pld5 (MGP_SPRETEiJ_G0015750) #34	Becn2 (MGP_SPRETEiJ_G0015749)	Exo1 (MGP_SPRETEiJ_G0015748)	Wdr64 (MGP_SPRETEiJ_G0015747)	Chml (MGP_SPRETEiJ_G0015746)	Opn3 (MGP_SPRETEiJ_G0015745)
Ryukyu mouse	MODERN SPECIES		Itpkb (MGP_CAROLIEiJ_G0014976)	Psen2 (MGP_CAROLIEiJ_G0014975)	Coq8a (MGP_CAROLIEiJ_G0014974)	Cdc42bpa (MGP_CAROLIEiJ_G0014973)	MGP_CAROLIEiJ_G0014972	Ahctf1 (MGP_CAROLIEiJ_G0014971) #15	Kif28 (MGP_CAROLIEiJ_G0014970)	Sccpdh (MGP_CAROLIEiJ_G0014969) #16	Cnst (MGP_CAROLIEiJ_G0014968) #17	MGP_CAROLIEiJ_G0014967 #18	MGP_CAROLIEiJ_G0014966 #18	Smyd3 (MGP_CAROLIEiJ_G0014965) #19	Kif26b (MGP_CAROLIEiJ_G0014964) #20	Efcab2 (MGP_CAROLIEiJ_G0014963) #21	Hnrnpu (MGP_CAROLIEiJ_G0014962) #22	MGP_CAROLIEiJ_G0014961 #22	Cox20 (MGP_CAROLIEiJ_G0014960) #23	Desi2 (MGP_CAROLIEiJ_G0014959) #25	MGP_CAROLIEiJ_G0014958	Adss (MGP_CAROLIEiJ_G0014957) #27	1700016C15Rik (MGP_CAROLIEiJ_G0014956) #28	Zbtb18 (MGP_CAROLIEiJ_G0014955) #29	Akt3 (MGP_CAROLIEiJ_G0014954) #30	Sdccag8 (MGP_CAROLIEiJ_G0014953) #32	Cep170 (MGP_CAROLIEiJ_G0014952) #33	Rbm8a2 (MGP_CAROLIEiJ_G0014951)	Pld5 (MGP_CAROLIEiJ_G0014950) #34	Becn2 (MGP_CAROLIEiJ_G0014949)	Exo1 (MGP_CAROLIEiJ_G0014948)	Wdr64 (MGP_CAROLIEiJ_G0014947)	Chml (MGP_CAROLIEiJ_G0014946)
Shrew mouse	MODERN SPECIES	18	Itpkb (MGP_PahariEiJ_G0028207)	Psen2 (MGP_PahariEiJ_G0028206)	Coq8a (MGP_PahariEiJ_G0028205)	Cdc42bpa (MGP_PahariEiJ_G0028204)	MGP_PahariEiJ_G0028203	MGP_PahariEiJ_G0028202 #15	Kif28 (MGP_PahariEiJ_G0028201)	Sccpdh (MGP_PahariEiJ_G0028200) #16	Cnst (MGP_PahariEiJ_G0028199) #17	MGP_PahariEiJ_G0028198 #18	MGP_PahariEiJ_G0028197 #18	Smyd3 (MGP_PahariEiJ_G0028196) #19	Kif26b (MGP_PahariEiJ_G0028195) #20	Efcab2 (MGP_PahariEiJ_G0028194) #21	Hnrnpu (MGP_PahariEiJ_G0028193) #22	MGP_PahariEiJ_G0028192 #22	Cox20 (MGP_PahariEiJ_G0028191) #23	MGP_PahariEiJ_G0028190 #25	Adss (MGP_PahariEiJ_G0028189) #27	1700016C15Rik (MGP_PahariEiJ_G0028188) #28	Zbtb18 (MGP_PahariEiJ_G0028187) #29	Akt3 (MGP_PahariEiJ_G0028186) #30	Sdccag8 (MGP_PahariEiJ_G0028185) #32	Cep170 (MGP_PahariEiJ_G0028184) #33	Pld5 (MGP_PahariEiJ_G0028183) #34	Becn2 (MGP_PahariEiJ_G0028182)	Exo1 (MGP_PahariEiJ_G0028181)	Wdr64 (MGP_PahariEiJ_G0028180)	Chml (MGP_PahariEiJ_G0028179)	Opn3 (MGP_PahariEiJ_G0028178)	Kmo (MGP_PahariEiJ_G0028177)
Rat	MODERN SPECIES	4	Lin9 (ENSRNOG00000023304)	Parp1 (ENSRNOG00000003084)	Stum (ENSRNOG00000071066)	Itpkb (ENSRNOG00000002969)	Psen2 (ENSRNOG00000002879)	Coq8a (ENSRNOG00000043201)	Cdc42bpa (ENSRNOG00000002841)	Ahctf1 (ENSRNOG00000023541) #15	Kif28p (ENSRNOG00000050602)	Sccpdh (ENSRNOG00000066712) #16	Cnst (ENSRNOG00000002710) #17	Tfb2m (ENSRNOG00000002695) #18	Smyd3 (ENSRNOG00000066304) #19	Kif26b (ENSRNOG00000028624) #20	Efcab2 (ENSRNOG00000042201) #21	Hnrnpu (ENSRNOG00000033790) #22	ENSRNOG00000066591	Btf3-ps1 (ENSRNOG00000031864)	Desi2 (ENSRNOG00000004524) #25	Catspere (ENSRNOG00000056537) #26	Adss (ENSRNOG00000004481) #27	C13h1orf100 (ENSRNOG00000021411) #28	Zbtb18 (ENSRNOG00000004423) #29	Rpl30l1 (ENSRNOG00000057677)	Akt3 (ENSRNOG00000021497) #30	Sdccag8 (ENSRNOG00000004181) #32	Cep170 (ENSRNOG00000004127) #33	Pld5 (ENSRNOG00000003997) #34	Becn2 (ENSRNOG00000038076)	Exo1 (ENSRNOG00000056209)	ENSRNOG00000064024
Upper Galilee mountains blind mole rat	MODERN SPECIES	1473							Ahctf1 (ENSNGAG00000001983) #15	Kif28 (ENSNGAG00000013723)	Sccpdh (ENSNGAG00000018881) #16	Cnst (ENSNGAG00000001157) #17	Tfb2m (ENSNGAG00000018240) #18	ENSNGAG00000005247	Smyd3 (ENSNGAG00000014029) #19	ENSNGAG00000013762 #20	Efcab2 (ENSNGAG00000017119) #21	Hnrnpu (ENSNGAG00000019075) #22	Cox20 (ENSNGAG00000002776) #23	Desi2 (ENSNGAG00000017919) #25	ENSNGAG00000000401	Adss (ENSNGAG00000003132) #27	ENSNGAG00000006928	Zbtb18 (ENSNGAG00000008361) #29	Akt3 (ENSNGAG00000013336) #30	Sdccag8 (ENSNGAG00000015552) #32	Cep170 (ENSNGAG00000019300) #33	ENSNGAG00000014315	Pld5 (ENSNGAG00000020901) #34	Becn2 (ENSNGAG00000015212)	ENSNGAG00000018547	Wdr64 (ENSNGAG00000002915)	Opn3 (ENSNGAG00000013479)
Lesser Egyptian jerboa	MODERN SPECIES	51	Lin9 (ENSJJAG00000019828)	Parp1 (ENSJJAG00000023497)	Stum (ENSJJAG00000021582)	Itpkb (ENSJJAG00000010265)	Psen2 (ENSJJAG00000023570)	Coq8a (ENSJJAG00000001225)	Cdc42bpa (ENSJJAG00000010408)	Ahctf1 (ENSJJAG00000015815) #15	Kif28 (ENSJJAG00000009428)	Sccpdh (ENSJJAG00000016528) #16	Cnst (ENSJJAG00000019924) #17	Tfb2m (ENSJJAG00000019285) #18	Smyd3 (ENSJJAG00000024434) #19	Kif26b (ENSJJAG00000021322) #20	Efcab2 (ENSJJAG00000001490) #21	Hnrnpu (ENSJJAG00000011371) #22	ENSJJAG00000019395 #23	ENSJJAG00000024194 #25	Adss (ENSJJAG00000021726) #27	1700016C15Rik (ENSJJAG00000024007) #28	Zbtb18 (ENSJJAG00000021234) #29	Akt3 (ENSJJAG00000010899) #30	Sdccag8 (ENSJJAG00000021886) #32	Cep170 (ENSJJAG00000014809) #33	ENSJJAG00000022798	Pld5 (ENSJJAG00000011744) #34	Wdr64 (ENSJJAG00000016288)	Opn3 (ENSJJAG00000020588)	Kmo (ENSJJAG00000018020)	Fh1 (ENSJJAG00000004989)	Rgs7 (ENSJJAG00000011876)
Kangaroo rat	MODERN SPECIES	354	ENSDORG00000008009	Acbd3 (ENSDORG00000002107)	Lin9 (ENSDORG00000011989)	Parp1 (ENSDORG00000005234)	ENSDORG00000027357	Psen2 (ENSDORG00000001758)	Coq8a (ENSDORG00000010000)	Cdc42bpa (ENSDORG00000010002)	Ahctf1 (ENSDORG00000001298) #15	Sccpdh (ENSDORG00000005002) #16	ENSDORG00000009570 #17	Tfb2m (ENSDORG00000026012) #18	Smyd3 (ENSDORG00000001030) #19	Kif26b (ENSDORG00000027986) #20	Efcab2 (ENSDORG00000027552) #21	Hnrnpu (ENSDORG00000015491) #22	Cox20 (ENSDORG00000023905) #23	Desi2 (ENSDORG00000002787) #25	Adss (ENSDORG00000010974) #27	1700016C15Rik (ENSDORG00000010973) #28	ENSDORG00000029972 #29	Akt3 (ENSDORG00000004303) #30	Sdccag8 (ENSDORG00000000842) #32	ENSDORG00000029309	Cep170 (ENSDORG00000029922) #33	Uchl5 (ENSDORG00000013932)	Ro60 (ENSDORG00000006152)	ENSDORG00000006154	Cdc73 (ENSDORG00000000552)	B3galt2 (ENSDORG00000023725)	Kcnt2 (ENSDORG00000008155)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590.k #21	ENSGT00940000160590.l #21	ENSGT00940000156546 #22	ENSGT00390000016158.i #23	ENSGT00910000147125	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Marmotini	ANCESTRAL SPECIES	21	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590.k #21	ENSGT00940000156546 #22	ENSGT00390000016158.i #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT01030000235784	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Alpin marmot	MODERN SPECIES	12	ENSMMMG00000024067	STUM (ENSMMMG00000024066)	ITPKB (ENSMMMG00000024065)	PSEN2 (ENSMMMG00000024062)	COQ8A (ENSMMMG00000024059)	CDC42BPA (ENSMMMG00000024041)	AHCTF1 (ENSMMMG00000024028) #15	ENSMMMG00000024027	ENSMMMG00000024026	SCCPDH (ENSMMMG00000024025) #16	CNST (ENSMMMG00000024021) #17	TFB2M (ENSMMMG00000024017) #18	SMYD3 (ENSMMMG00000024012) #19	KIF26B (ENSMMMG00000024009) #20	EFCAB2 (ENSMMMG00000024005) #21	HNRNPU (ENSMMMG00000023721) #22	COX20 (ENSMMMG00000023713) #23	DESI2 (ENSMMMG00000023711) #25	ENSMMMG00000023709 #26	ADSS2 (ENSMMMG00000023707) #27	C1orf100 (ENSMMMG00000023704) #28	ENSMMMG00000023703	ENSMMMG00000023698 #29	AKT3 (ENSMMMG00000023693) #30	SDCCAG8 (ENSMMMG00000023689) #32	CEP170 (ENSMMMG00000023685) #33	PLD5 (ENSMMMG00000023675) #34	MAP1LC3C (ENSMMMG00000023673) #36	BECN2 (ENSMMMG00000023671)	ENSMMMG00000023670 #36	EXO1 (ENSMMMG00000023668)
Marmotini_b	ANCESTRAL SPECIES	84	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590.k #21	ENSGT00940000156546 #22	ENSGT00390000016158.i #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT01030000235784	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Squirrel	MODERN SPECIES	126	STUM (ENSSTOG00000004805)	ITPKB (ENSSTOG00000019688)	ENSSTOG00000033187	PSEN2 (ENSSTOG00000025166)	COQ8A (ENSSTOG00000015395)	CDC42BPA (ENSSTOG00000015415)	AHCTF1 (ENSSTOG00000010795) #15	ENSSTOG00000021998	SCCPDH (ENSSTOG00000007502) #16	ENSSTOG00000025585	CNST (ENSSTOG00000000432) #17	TFB2M (ENSSTOG00000034162) #18	SMYD3 (ENSSTOG00000028065) #19	KIF26B (ENSSTOG00000028101) #20	ENSSTOG00000031476 #21	ENSSTOG00000000153 #22	COX20 (ENSSTOG00000000151) #23	DESI2 (ENSSTOG00000004752) #25	ADSS2 (ENSSTOG00000004376) #27	C1orf100 (ENSSTOG00000022394) #28	ZBTB18 (ENSSTOG00000004290) #29	AKT3 (ENSSTOG00000010595) #30	ENSSTOG00000030430	SDCCAG8 (ENSSTOG00000010585) #32	CEP170 (ENSSTOG00000008203) #33	PLD5 (ENSSTOG00000031877) #34	MAP1LC3C (ENSSTOG00000010423) #36	BECN2 (ENSSTOG00000027748)	ENSSTOG00000012715	OPN3 (ENSSTOG00000012707)	KMO (ENSSTOG00000012690)
Arctic ground squirrel	MODERN SPECIES	79										SCCPDH (ENSUPAG00010018131) #16	CNST (ENSUPAG00010018148) #17	ENSUPAG00010018160 #18	SMYD3 (ENSUPAG00010018170) #19	KIF26B (ENSUPAG00010018207) #20	EFCAB2 (ENSUPAG00010018238) #21	HNRNPU (ENSUPAG00010018254) #22	ENSUPAG00010018307 #23	DESI2 (ENSUPAG00010018313) #25	ENSUPAG00010018323 #26	ADSS2 (ENSUPAG00010018358) #27	C1orf100 (ENSUPAG00010018380) #28	ENSUPAG00010018394	ZBTB18 (ENSUPAG00010018400) #29	AKT3 (ENSUPAG00010018428) #30	SDCCAG8 (ENSUPAG00010018478) #32	CEP170 (ENSUPAG00010018567) #33	PLD5 (ENSUPAG00010018694) #34	MAP1LC3C (ENSUPAG00010018734) #36	BECN2 (ENSUPAG00010018741)	ENSUPAG00010018744 #36	EXO1 (ENSUPAG00010018752)
Eurasian red squirrel	MODERN SPECIES	3	COQ8A (ENSSVLG00005009997)	ENSSVLG00005009948	CDC42BPA (ENSSVLG00005009702)	AHCTF1 (ENSSVLG00005009197) #15	ENSSVLG00005009114	SCCPDH (ENSSVLG00005009073) #16	ENSSVLG00005009039	ENSSVLG00005009011 #17	ENSSVLG00005023906	TFB2M (ENSSVLG00005023868) #18	SMYD3 (ENSSVLG00005023822) #19	ENSSVLG00005023802	ENSSVLG00005023779	KIF26B (ENSSVLG00005023636) #20	ENSSVLG00005023557 #21	HNRNPU (ENSSVLG00005023262) #22	ENSSVLG00005023185 #23	ENSSVLG00005023149	DESI2 (ENSSVLG00005023102) #25	CATSPERE (ENSSVLG00005022809) #26	ENSSVLG00005022682 #27	C1orf100 (ENSSVLG00005022598) #28	ZBTB18 (ENSSVLG00005022559) #29	AKT3 (ENSSVLG00005022494) #30	SDCCAG8 (ENSSVLG00005022441) #32	CEP170 (ENSSVLG00005022337) #33	ENSSVLG00005022301	PLD5 (ENSSVLG00005022151) #34	MAP1LC3C (ENSSVLG00005022067) #36	BECN2 (ENSSVLG00005022043)	ENSSVLG00005022002 #36
Hystricomorpha	ANCESTRAL SPECIES	49	ENSGT00390000000747	ENSGT01100000263502.A.a.b	ENSGT00950000182994.A.n.b	ENSGT00940000160037	ENSGT00510000047676	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000157923	ENSGT00940000156484.b	ENSGT00960000186787	ENSGT00940000156989	ENSGT00950000182836.b.a.b
Naked mole-rat female	MODERN SPECIES	16	ENSHGLG00000010422	ENSHGLG00000018487 #15	ENSHGLG00000034681	SCCPDH (ENSHGLG00000006856) #16	CNST (ENSHGLG00000013480) #17	ENSHGLG00000039138 #18	ENSHGLG00000033222	ENSHGLG00000037193	ENSHGLG00000015190 #19	ENSHGLG00000040776	ENSHGLG00000020542	ENSHGLG00000044814	ENSHGLG00000015928 #20	ENSHGLG00000034325 #21	ENSHGLG00000042794	ENSHGLG00000010594 #22	COX20 (ENSHGLG00000015836) #23	ENSHGLG00000043796	ENSHGLG00000015935	ENSHGLG00000035202 #25	ENSHGLG00000041745 #26	ENSHGLG00000009917 #28	ADSS (ENSHGLG00000007672) #27	ZBTB18 (ENSHGLG00000003880) #29	ENSHGLG00000043051	AKT3 (ENSHGLG00000006424) #30	ENSHGLG00000004271 #32	ENSHGLG00000038674 #33	ENSHGLG00000006465 #33	ENSHGLG00000011191	ENSHGLG00000043505
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00390000000747	ENSGT01100000263502.A.a.b	ENSGT00950000182994.A.n.b	ENSGT00940000160037	ENSGT00510000047676	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000157923	ENSGT00940000156484.b	ENSGT00940000156989	ENSGT00950000182836.b.a.b	ENSGT00390000011724
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00390000000747	ENSGT01100000263502.A.a.b	ENSGT00950000182994.A.n.b	ENSGT00940000160037	ENSGT00510000047676	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060.t #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00660000097201	ENSGT00950000183059.b.a.b #34	ENSGT00940000157923	ENSGT00940000156484.b	ENSGT00940000156989	ENSGT00950000182836.b.a.b
Degu	DUPLICATION
Degu	MODERN SPECIES	58	ENSODEG00000013958	ENSODEG00000013164	COQ8A (ENSODEG00000014200)	CDC42BPA (ENSODEG00000013167)	AHCTF1 (ENSODEG00000014462) #15	ENSODEG00000014576	SCCPDH (ENSODEG00000013300) #16	CNST (ENSODEG00000013290) #17	ENSODEG00000020123	ENSODEG00000013735 #18	SMYD3 (ENSODEG00000012912) #19	KIF26B (ENSODEG00000013218) #20	EFCAB2 (ENSODEG00000013516) #21	ENSODEG00000014131	ENSODEG00000014016	ENSODEG00000014458 #22	ENSODEG00000013336 #23	ENSODEG00000013410	ENSODEG00000013295 #25	ADSS2 (ENSODEG00000015411) #27	C1orf100 (ENSODEG00000012902) #28	ZBTB18 (ENSODEG00000014080) #29	AKT3 (ENSODEG00000013255) #30	ENSODEG00000013767	SDCCAG8 (ENSODEG00000013437) #32	ENSODEG00000014847 #33	ENSODEG00000016144 #33	ENSODEG00000013620 #33	ENSODEG00000014979	ENSODEG00000014152	PLD5 (ENSODEG00000013817) #34
Degu	MODERN SPECIES	264															ENSODEG00000018783	ENSODEG00000002190 #22	ENSODEG00000002169	ENSODEG00000002153	ENSODEG00000018778	ENSODEG00000002139	MAOA (ENSODEG00000002111)	ENSODEG00000002078	MAOB (ENSODEG00000001994)	NDP (ENSODEG00000001957)	ENSODEG00000001919 #9	EFHC2 (ENSODEG00000002110)	ENSODEG00000018784	ENSODEG00000002036	ENSODEG00000018729	ENSODEG00000018726	KDM6A (ENSODEG00000001759)
Long-tailed chinchilla	MODERN SPECIES	113	OPN3 (ENSCLAG00000008288)	CHML (ENSCLAG00000007660)	WDR64 (ENSCLAG00000010736)	EXO1 (ENSCLAG00000007598)	COQ8A (ENSCLAG00000012536)	CDC42BPA (ENSCLAG00000012875)	AHCTF1 (ENSCLAG00000007804) #15	ENSCLAG00000014434	SCCPDH (ENSCLAG00000009869) #16	CNST (ENSCLAG00000008046) #17	TFB2M (ENSCLAG00000008614) #18	SMYD3 (ENSCLAG00000010031) #19	KIF26B (ENSCLAG00000012108) #20	EFCAB2 (ENSCLAG00000008343) #21	ENSCLAG00000007770 #23	HNRNPU (ENSCLAG00000007100) #22	DESI2 (ENSCLAG00000011829) #25	CATSPERE (ENSCLAG00000009169) #26	ADSS2 (ENSCLAG00000008748) #27	C1orf100 (ENSCLAG00000007599) #28	ZBTB18 (ENSCLAG00000015788) #29	ENSCLAG00000009649 #30	SDCCAG8 (ENSCLAG00000011676) #32	CEP170 (ENSCLAG00000015564) #33	ENSCLAG00000010377	PLD5 (ENSCLAG00000014400) #34	PSEN2 (ENSCLAG00000013788)	SLC30A1 (ENSCLAG00000009695)	NEK2 (ENSCLAG00000010880)	LPGAT1 (ENSCLAG00000011509)	INTS7 (ENSCLAG00000011748)
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	13	FH (ENSCPOG00000035592)	KMO (ENSCPOG00000014001)	OPN3 (ENSCPOG00000036960)	WDR64 (ENSCPOG00000034318)	EXO1 (ENSCPOG00000000363)	COQ8A (ENSCPOG00000011445)	CDC42BPA (ENSCPOG00000011457)	AHCTF1 (ENSCPOG00000009216) #15	ENSCPOG00000036159	SCCPDH (ENSCPOG00000029999) #16	CNST (ENSCPOG00000012012) #17	ENSCPOG00000013225 #18	SMYD3 (ENSCPOG00000002655) #19	KIF26B (ENSCPOG00000001048) #20	EFCAB2 (ENSCPOG00000024335) #21	HNRNPU (ENSCPOG00000011887) #22	COX20 (ENSCPOG00000032295) #23	DESI2 (ENSCPOG00000002091) #25	ADSS2 (ENSCPOG00000002342) #27	C1orf100 (ENSCPOG00000002339) #28	ZBTB18 (ENSCPOG00000035384) #29	AKT3 (ENSCPOG00000015504) #30	SDCCAG8 (ENSCPOG00000015503) #32	ENSCPOG00000034860 #33	ENSCPOG00000002683 #33	ENSCPOG00000002221	PLD5 (ENSCPOG00000033411) #34	PSEN2 (ENSCPOG00000001827)	SLC30A1 (ENSCPOG00000013692)	NEK2 (ENSCPOG00000011264)	LPGAT1 (ENSCPOG00000011269)
Guinea pig	MODERN SPECIES	44	ENSCPOG00000021873	LGALS12 (ENSCPOG00000001729)	SLC22A8 (ENSCPOG00000007880)	SLC22A6 (ENSCPOG00000015195)	CHRM1 (ENSCPOG00000000307)	SLC3A2 (ENSCPOG00000013152)	WDR74 (ENSCPOG00000008305)	STX5 (ENSCPOG00000030304)	NXF1 (ENSCPOG00000006126)	TMEM223 (ENSCPOG00000006124)	TMEM179B (ENSCPOG00000006121)	TAF6L (ENSCPOG00000002702)	POLR2G (ENSCPOG00000036420)	ZBTB3 (ENSCPOG00000011665)	TTC9C (ENSCPOG00000031200)	ENSCPOG00000000739 #22	GNG3 (ENSCPOG00000040497)	LRRN4CL (ENSCPOG00000036188)	BSCL2 (ENSCPOG00000021949)	UBXN1 (ENSCPOG00000004750)	UQCC3 (ENSCPOG00000035939)	CSKMT (ENSCPOG00000027504)	C11orf98 (ENSCPOG00000039535)	INTS5 (ENSCPOG00000003669)	GANAB (ENSCPOG00000003659)	B3GAT3 (ENSCPOG00000021841)	ROM1 (ENSCPOG00000020227)	EML3 (ENSCPOG00000014293)	MTA2 (ENSCPOG00000014290)	TUT1 (ENSCPOG00000014281)	EEF1G (ENSCPOG00000025703)
Laurasiatheria	ANCESTRAL SPECIES	28	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00410000028378	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00410000028378	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.b	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b
Carnivora	ANCESTRAL SPECIES	14	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.b	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.c #36	ENSGT00390000008164.d	ENSGT00940000161852.d #36	ENSGT00510000047676	ENSGT00940000160037
Caniformia	ANCESTRAL SPECIES	10	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.c #36	ENSGT00390000008164.d	ENSGT00940000161852.d #36	ENSGT00510000047676	ENSGT00940000160037
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.c #36	ENSGT00390000008164.d	ENSGT00940000161852.d #36	ENSGT00510000047676	ENSGT00940000160037
Ursidae	ANCESTRAL SPECIES	4	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000161606.d	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.c #36	ENSGT00390000008164.d	ENSGT00940000161852.d #36	ENSGT00510000047676
Ursus	ANCESTRAL SPECIES	90	ENSGT00530000063651.a	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158.z #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000161606.d	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.c #36	ENSGT00390000008164.d	ENSGT00940000161852.d #36	ENSGT00510000047676
American black bear	MODERN SPECIES	3720																HNRNPU (ENSUAMG00000021120) #22	ENSUAMG00000022484	DESI2 (ENSUAMG00000022485) #25
Polar bear	MODERN SPECIES	99	ACBD3 (ENSUMAG00000015197)	LIN9 (ENSUMAG00000015190)	PARP1 (ENSUMAG00000014555)	ENSUMAG00000014454	PSEN2 (ENSUMAG00000014436)	COQ8A (ENSUMAG00000014369)	CDC42BPA (ENSUMAG00000014320)	AHCTF1 (ENSUMAG00000013411) #15	ENSUMAG00000013333	SCCPDH (ENSUMAG00000013328) #16	ENSUMAG00000013325	TFB2M (ENSUMAG00000013324) #18	ENSUMAG00000013322	ENSUMAG00000013317 #19	EFCAB2 (ENSUMAG00000013304) #21	HNRNPU (ENSUMAG00000012322) #22	ENSUMAG00000012218 #23	DESI2 (ENSUMAG00000012207) #25	ENSUMAG00000012197 #26	ADSS2 (ENSUMAG00000011932) #27	C1orf100 (ENSUMAG00000011873) #28	ZBTB18 (ENSUMAG00000011860) #29	AKT3 (ENSUMAG00000011832) #30	SDCCAG8 (ENSUMAG00000011811) #32	CEP170 (ENSUMAG00000011791) #33	PLD5 (ENSUMAG00000011776) #34	ENSUMAG00000011763 #36	BECN2 (ENSUMAG00000011758)	ENSUMAG00000011753 #36	EXO1 (ENSUMAG00000011743)	ENSUMAG00000011733
Giant Panda	MODERN SPECIES	18	LIN9 (ENSAMEG00000014535)	PARP1 (ENSAMEG00000014451)	STUM (ENSAMEG00000009117)	ITPKB (ENSAMEG00000009097)	PSEN2 (ENSAMEG00000009070)	COQ8A (ENSAMEG00000009019)	ENSAMEG00000008890	ENSAMEG00000006501 #15	ENSAMEG00000029183	SCCPDH (ENSAMEG00000006562) #16	CNST (ENSAMEG00000006589) #17	TFB2M (ENSAMEG00000006593) #18	SMYD3 (ENSAMEG00000006619) #19	KIF26B (ENSAMEG00000009119) #20	EFCAB2 (ENSAMEG00000009139) #21	HNRNPU (ENSAMEG00000009145) #22	COX20 (ENSAMEG00000026571) #23	DESI2 (ENSAMEG00000027766) #25	CATSPERE (ENSAMEG00000009228) #26	ADSS2 (ENSAMEG00000009234) #27	C1orf100 (ENSAMEG00000009269) #28	ZBTB18 (ENSAMEG00000019750) #29	AKT3 (ENSAMEG00000009273) #30	SDCCAG8 (ENSAMEG00000009331) #32	ENSAMEG00000024848	CEP170 (ENSAMEG00000018213) #33	PLD5 (ENSAMEG00000013913) #34	ENSAMEG00000013919 #36	BECN2 (ENSAMEG00000018816)	ENSAMEG00000013927 #36	EXO1 (ENSAMEG00000013934)
Mustelinae	ANCESTRAL SPECIES	88	ENSGT00960000186787	ENSGT00940000156484.b	ENSGT00390000002089.a.b	ENSGT00940000160954	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.c #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b
Ferret	MODERN SPECIES	217	PSEN2 (ENSMPUG00000015849)	COQ8A (ENSMPUG00000015827)	CDC42BPA (ENSMPUG00000015826)	ENSMPUG00000015825	AHCTF1 (ENSMPUG00000015820) #15	ENSMPUG00000015819	ENSMPUG00000015818	ENSMPUG00000015817	SCCPDH (ENSMPUG00000015815) #16	CNST (ENSMPUG00000015813) #17	TFB2M (ENSMPUG00000015810) #18	ENSMPUG00000015808 #19	SMYD3 (ENSMPUG00000015806) #19	KIF26B (ENSMPUG00000015788) #20	EFCAB2 (ENSMPUG00000015784) #21	HNRNPU (ENSMPUG00000015752) #22	ENSMPUG00000015750 #23	DESI2 (ENSMPUG00000015748) #25	CATSPERE (ENSMPUG00000015745) #26	ADSS2 (ENSMPUG00000015741) #27	C1orf100 (ENSMPUG00000015737) #28	ZBTB18 (ENSMPUG00000015734) #29	AKT3 (ENSMPUG00000015730) #30	SDCCAG8 (ENSMPUG00000015725) #32	CEP170 (ENSMPUG00000015723) #33	ENSMPUG00000015722	ENSMPUG00000015721	PLD5 (ENSMPUG00000015720) #34	MAP1LC3C (ENSMPUG00000015717) #36	BECN2 (ENSMPUG00000015713)	EXO1 (ENSMPUG00000015709)
American mink	MODERN SPECIES	43	ENSNVIG00000004408	ZNT1 (ENSNVIG00000004401)	RD3 (ENSNVIG00000004395)	TRAF5 (ENSNVIG00000004351)	PSEN2 (ENSNVIG00000004312)	COQ8A (ENSNVIG00000004266)	CDC42BPA (ENSNVIG00000003776)	AHCTF1 (ENSNVIG00000003655) #15	ENSNVIG00000003647	SCCPDH (ENSNVIG00000003629) #16	CNST (ENSNVIG00000003578) #17	TFB2M (ENSNVIG00000003533) #18	SMYD3 (ENSNVIG00000003474) #19	KIF26B (ENSNVIG00000003416) #20	EFCAB2 (ENSNVIG00000003367) #21	HNRNPU (ENSNVIG00000003228) #22	COX20 (ENSNVIG00000003195) #23	DESI2 (ENSNVIG00000003153) #25	CATSPERE (ENSNVIG00000003022) #26	ADSS2 (ENSNVIG00000003006) #27	C1orf100 (ENSNVIG00000002977) #28	ZBTB18 (ENSNVIG00000002964) #29	AKT3 (ENSNVIG00000002948) #30	SDCCAG8 (ENSNVIG00000002442) #32	CEP170 (ENSNVIG00000002232) #33	PLD5 (ENSNVIG00000002170) #34	MAP1LC3C (ENSNVIG00000002161) #36	BECN2 (ENSNVIG00000002160)	EXO1 (ENSNVIG00000002104)	WDR64 (ENSNVIG00000002088)	CHML (ENSNVIG00000002080)
Canidae	ANCESTRAL SPECIES	1	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.d #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00390000009320.eb.a	ENSGT00940000160037
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT00390000018900 #15	ENSGT00940000178689	ENSGT00950000183029.B.c.b.b.b.i.b	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.d #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00390000009320.eb.a	ENSGT00940000160037
Dingo	MODERN SPECIES	271	ITPKB (ENSCAFG00020001406)	PSEN2 (ENSCAFG00020001399)	COQ8A (ENSCAFG00020001368)	CDC42BPA (ENSCAFG00020001364)	ENSCAFG00020001351	ENSCAFG00020001339	AHCTF1 (ENSCAFG00020001201) #15	ENSCAFG00020001167	ENSCAFG00020001153	SCCPDH (ENSCAFG00020001113) #16	CNST (ENSCAFG00020001096) #17	TFB2M (ENSCAFG00020001084) #18	ENSCAFG00020001053 #19	KIF26B (ENSCAFG00020000955) #20	ENSCAFG00020000931 #21	HNRNPU (ENSCAFG00020000918) #22	COX20 (ENSCAFG00020000902) #23	DESI2 (ENSCAFG00020000895) #25	ENSCAFG00020000834 #26	ADSS2 (ENSCAFG00020000812) #27	C1orf100 (ENSCAFG00020000808) #28	ZBTB18 (ENSCAFG00020000800) #29	AKT3 (ENSCAFG00020000778) #30	SDCCAG8 (ENSCAFG00020000770) #32	CEP170 (ENSCAFG00020000490) #33	ENSCAFG00020000451	PLD5 (ENSCAFG00020000394) #34	MAP1LC3C (ENSCAFG00020000378) #36	ENSCAFG00020000314	EXO1 (ENSCAFG00020000260)	ENSCAFG00020000198
Dog	MODERN SPECIES	35	STUM (ENSCAFG00845008283)	ITPKB (ENSCAFG00845008212)	PSEN2 (ENSCAFG00845008023)	COQ8A (ENSCAFG00845007817)	ENSCAFG00845007754	CDC42BPA (ENSCAFG00845007016)	AHCTF1 (ENSCAFG00845006427) #15	ENSCAFG00845006225	ENSCAFG00845006160	SCCPDH (ENSCAFG00845006130) #16	CNST (ENSCAFG00845005933) #17	TFB2M (ENSCAFG00845005847) #18	SMYD3 (ENSCAFG00845005785) #19	KIF26B (ENSCAFG00845005694) #20	ENSCAFG00845005646 #21	HNRNPU (ENSCAFG00845005509) #22	ENSCAFG00845005435 #23	DESI2 (ENSCAFG00845005415) #25	CATSPERE (ENSCAFG00845005306) #26	ADSS2 (ENSCAFG00845005250) #27	C7H1orf100 (ENSCAFG00845005216) #28	ZBTB18 (ENSCAFG00845004904) #29	AKT3 (ENSCAFG00845004858) #30	SDCCAG8 (ENSCAFG00845004779) #32	CEP170 (ENSCAFG00845004652) #33	ENSCAFG00845004592	PLD5 (ENSCAFG00845004571) #34	MAP1LC3C (ENSCAFG00845004557) #36	BECN2 (ENSCAFG00845004546)	EXO1 (ENSCAFG00845004521)	ENSCAFG00845004504
Red fox	MODERN SPECIES	45	LIN9 (ENSVVUG00000001682)	PARP1 (ENSVVUG00000001655)	STUM (ENSVVUG00000001575)	ITPKB (ENSVVUG00000001558)	PSEN2 (ENSVVUG00000001510)	COQ8A (ENSVVUG00000001434)	ENSVVUG00000001391	CDC42BPA (ENSVVUG00000001137)	AHCTF1 (ENSVVUG00000000955) #15	SCCPDH (ENSVVUG00000000879) #16	CNST (ENSVVUG00000000780) #17	ENSVVUG00000000650 #18	ENSVVUG00000000542 #19	KIF26B (ENSVVUG00000000074) #20	EFCAB2 (ENSVVUG00000026538) #21	HNRNPU (ENSVVUG00000026524) #22	COX20 (ENSVVUG00000026522) #23	DESI2 (ENSVVUG00000026519) #25	CATSPERE (ENSVVUG00000026515) #26	ADSS (ENSVVUG00000026505) #27	C1orf100 (ENSVVUG00000026502) #28	ENSVVUG00000026500	ZBTB18 (ENSVVUG00000026495) #29	AKT3 (ENSVVUG00000026493) #30	SDCCAG8 (ENSVVUG00000026484) #32	CEP170 (ENSVVUG00000026459) #33	PLD5 (ENSVVUG00000026443) #34	MAP1LC3C (ENSVVUG00000026440) #36	EXO1 (ENSVVUG00000026435)	ENSVVUG00000026430	WDR64 (ENSVVUG00000026426)
Felidae	ANCESTRAL SPECIES	11	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.b	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.c #36	ENSGT00390000008164.d	ENSGT00940000161852.d.a #36	ENSGT00510000047676	ENSGT00940000160037
Panthera	ANCESTRAL SPECIES	19	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.b	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.c #36	ENSGT00390000008164.d	ENSGT00940000161852.d.a #36	ENSGT00510000047676	ENSGT00940000160037
Panthera_a	ANCESTRAL SPECIES	19	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.b	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.c #36	ENSGT00390000008164.d	ENSGT00940000161852.d.a #36	ENSGT00510000047676	ENSGT00940000160037
lion	MODERN SPECIES	17	LIN9 (ENSPLOG00000006364)	PARP1 (ENSPLOG00000006420)	STUM (ENSPLOG00000006487)	ITPKB (ENSPLOG00000006512)	PSEN2 (ENSPLOG00000006537)	COQ8A (ENSPLOG00000006581)	CDC42BPA (ENSPLOG00000006680)	AHCTF1 (ENSPLOG00000006807) #15	ENSPLOG00000007118	SCCPDH (ENSPLOG00000007254) #16	CNST (ENSPLOG00000007297) #17	TFB2M (ENSPLOG00000007355) #18	SMYD3 (ENSPLOG00000007373) #19	KIF26B (ENSPLOG00000007502) #20	EFCAB2 (ENSPLOG00000007794) #21	HNRNPU (ENSPLOG00000007884) #22	ENSPLOG00000008076 #23	DESI2 (ENSPLOG00000008117) #25	CATSPERE (ENSPLOG00000008156) #26	ADSS2 (ENSPLOG00000008393) #27	C1orf100 (ENSPLOG00000008471) #28	ZBTB18 (ENSPLOG00000008563) #29	AKT3 (ENSPLOG00000008604) #30	SDCCAG8 (ENSPLOG00000008743) #32	CEP170 (ENSPLOG00000008822) #33	PLD5 (ENSPLOG00000008930) #34	ENSPLOG00000009034 #36	BECN2 (ENSPLOG00000009097)	ENSPLOG00000009175 #36	EXO1 (ENSPLOG00000009218)	WDR64 (ENSPLOG00000009316)
leopard	MODERN SPECIES	4	LIN9 (ENSPPRG00000003816)	PARP1 (ENSPPRG00000003528)	STUM (ENSPPRG00000002817)	ITPKB (ENSPPRG00000002311)	PSEN2 (ENSPPRG00000002017)	COQ8A (ENSPPRG00000022935)	CDC42BPA (ENSPPRG00000024128)	ENSPPRG00000009605	SCCPDH (ENSPPRG00000008599) #16	CNST (ENSPPRG00000008188) #17	TFB2M (ENSPPRG00000007350) #18	SMYD3 (ENSPPRG00000007149) #19	KIF26B (ENSPPRG00000005611) #20	ENSPPRG00000005048	EFCAB2 (ENSPPRG00000003970) #21	HNRNPU (ENSPPRG00000002662) #22	ENSPPRG00000016002 #23	DESI2 (ENSPPRG00000015454) #25	CATSPERE (ENSPPRG00000013157) #26	ADSS2 (ENSPPRG00000009968) #27	C1orf100 (ENSPPRG00000009331) #28	ZBTB18 (ENSPPRG00000009151) #29	AKT3 (ENSPPRG00000008984) #30	SDCCAG8 (ENSPPRG00000006575) #32	CEP170 (ENSPPRG00000005786) #33	PLD5 (ENSPPRG00000004006) #34	ENSPPRG00000003284 #36	ENSPPRG00000002695 #36	EXO1 (ENSPPRG00000002261)	WDR64 (ENSPPRG00000000202)	OPN3 (ENSPPRG00000016394)
Tiger	MODERN SPECIES	95												SMYD3 (ENSPTIG00000017118) #19	KIF26B (ENSPTIG00000017769) #20	ENSPTIG00000018837	EFCAB2 (ENSPTIG00000019824) #21	HNRNPU (ENSPTIG00000020150) #22	COX20 (ENSPTIG00000011303) #23	DESI2 (ENSPTIG00000011692) #25	CATSPERE (ENSPTIG00000013424) #26	ADSS2 (ENSPTIG00000018415) #27	C1orf100 (ENSPTIG00000019529) #28	ZBTB18 (ENSPTIG00000020181) #29	AKT3 (ENSPTIG00000021068) #30	SDCCAG8 (ENSPTIG00000008829) #32	CEP170 (ENSPTIG00000011961) #33	PLD5 (ENSPTIG00000013519) #34	MAP1LC3C (ENSPTIG00000015165) #36	EXO1 (ENSPTIG00000015769)	WDR64 (ENSPTIG00000018586)	OPN3 (ENSPTIG00000007030)	KMO (ENSPTIG00000007560)
Cat	MODERN SPECIES	248	LIN9 (ENSFCAG00000010528)	PARP1 (ENSFCAG00000005777)	STUM (ENSFCAG00000043992)	ITPKB (ENSFCAG00000025620)	PSEN2 (ENSFCAG00000008781)	COQ8A (ENSFCAG00000044578)	CDC42BPA (ENSFCAG00000008784)	AHCTF1 (ENSFCAG00000014392) #15	ENSFCAG00000024485	SCCPDH (ENSFCAG00000010642) #16	CNST (ENSFCAG00000028075) #17	TFB2M (ENSFCAG00000021951) #18	SMYD3 (ENSFCAG00000038120) #19	KIF26B (ENSFCAG00000022128) #20	EFCAB2 (ENSFCAG00000029971) #21	HNRNPU (ENSFCAG00000002156) #22	COX20 (ENSFCAG00000036373) #23	ENSFCAG00000049403	DESI2 (ENSFCAG00000026628) #25	CATSPERE (ENSFCAG00000042283) #26	ADSS2 (ENSFCAG00000025698) #27	C1orf100 (ENSFCAG00000041166) #28	ZBTB18 (ENSFCAG00000043987) #29	AKT3 (ENSFCAG00000003700) #30	SDCCAG8 (ENSFCAG00000038761) #32	CEP170 (ENSFCAG00000026540) #33	PLD5 (ENSFCAG00000009424) #34	ENSFCAG00000051650	ENSFCAG00000052716	ENSFCAG00000040996 #36	ENSFCAG00000013340
Laurasiatheria_c	ANCESTRAL SPECIES	25	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b
Equus	ANCESTRAL SPECIES	41																ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.e #36	ENSGT00390000008164.d	ENSGT00940000161852.f #36	ENSGT00510000047676	ENSGT00940000160037
Donkey	MODERN SPECIES	23																ENSEASG00005003017 #22	COX20 (ENSEASG00005024069) #23	DESI2 (ENSEASG00005003022) #25	CATSPERE (ENSEASG00005036663) #26	ADSS2 (ENSEASG00005003054) #27	C1orf100 (ENSEASG00005026609) #28	ZBTB18 (ENSEASG00005030332) #29	AKT3 (ENSEASG00005003090) #30	SDCCAG8 (ENSEASG00005003097) #32	ENSEASG00005026305 #33	ENSEASG00005003123 #33	ENSEASG00005035739	PLD5 (ENSEASG00005003142) #34	ENSEASG00005030566 #36	BECN2 (ENSEASG00005003154)	EXO1 (ENSEASG00005003159)
Horse	MODERN SPECIES	23															ENSECAG00000052008	HNRNPU (ENSECAG00000007955) #22	COX20 (ENSECAG00000008125) #23	DESI2 (ENSECAG00000008142) #25	CATSPERE (ENSECAG00000008228) #26	ENSECAG00000056420	ENSECAG00000041634	ADSS2 (ENSECAG00000010744) #27	C30H1orf100 (ENSECAG00000016894) #28	ZBTB18 (ENSECAG00000033381) #29	AKT3 (ENSECAG00000019722) #30	SDCCAG8 (ENSECAG00000008477) #32	CEP170 (ENSECAG00000012163) #33	ENSECAG00000049767	ENSECAG00000052988	PLD5 (ENSECAG00000015845) #34	ENSECAG00000037253 #36
Chiroptera	ANCESTRAL SPECIES	30	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000178689	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b
Megabat	MODERN SPECIES	250																HNRNPU (ENSPVAG00000002581) #22	ENSPVAG00000002579	COX20 (ENSPVAG00000002577) #23	DESI2 (ENSPVAG00000002576) #25
Microchiroptera	ANCESTRAL SPECIES	32	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000178689	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b
Microbat	MODERN SPECIES	1517														ENSMLUG00000002654 #20	EFCAB2 (ENSMLUG00000003987) #21	HNRNPU (ENSMLUG00000000475) #22	COX20 (ENSMLUG00000026132) #23
Greater horseshoe bat	MODERN SPECIES	19	STUM (ENSRFEG00010014278)	ITPKB (ENSRFEG00010014319)	ENSRFEG00010014341	PSEN2 (ENSRFEG00010014406)	COQ8A (ENSRFEG00010014597)	CDC42BPA (ENSRFEG00010014755)	ENSRFEG00010015186	AHCTF1 (ENSRFEG00010015223) #15	ENSRFEG00010015342	SCCPDH (ENSRFEG00010015433) #16	CNST (ENSRFEG00010015524) #17	TFB2M (ENSRFEG00010015650) #18	SMYD3 (ENSRFEG00010015677) #19	KIF26B (ENSRFEG00010015778) #20	EFCAB2 (ENSRFEG00010015981) #21	HNRNPU (ENSRFEG00010016043) #22	COX20 (ENSRFEG00010017225) #23	DESI2 (ENSRFEG00010017267) #25	CATSPERE (ENSRFEG00010017401) #26	ENSRFEG00010018000	ADSS2 (ENSRFEG00010018012) #27	C1orf100 (ENSRFEG00010018065) #28	ENSRFEG00010018172 #29	SDCCAG8 (ENSRFEG00010018345) #32	CEP170 (ENSRFEG00010018444) #33	PLD5 (ENSRFEG00010018644) #34	MAP1LC3C (ENSRFEG00010018764) #36	BECN2 (ENSRFEG00010018835)	EXO1 (ENSRFEG00010018853)	WDR64 (ENSRFEG00010019065)	OPN3 (ENSRFEG00010019426)
Artiodactyla	ANCESTRAL SPECIES	25	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00410000028378	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037
Suina	ANCESTRAL SPECIES	55	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a.b	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799.j #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005.k #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00940000161852 #36	ENSGT00510000047676
Pig	MODERN SPECIES	1	CAPN8 (ENSSSCG00000034746)	ENSSSCG00000010888	SUSD4 (ENSSSCG00000011176)	TLR5 (ENSSSCG00000010885)	ENSSSCG00000051637	ENSSSCG00000033907 #16	ENSSSCG00000058221	ENSSSCG00000039234 #16	ENSSSCG00000010884 #16	CNST (ENSSSCG00000010882) #17	TFB2M (ENSSSCG00000023775) #18	SMYD3 (ENSSSCG00000022034) #19	KIF26B (ENSSSCG00000010879) #20	ENSSSCG00000063102	EFCAB2 (ENSSSCG00000010878) #21	HNRNPU (ENSSSCG00000010877) #22	COX20 (ENSSSCG00000039618) #23	ENSSSCG00000059887	ENSSSCG00000059272	ENSSSCG00000044211	DESI2 (ENSSSCG00000010876) #25	CATSPERE (ENSSSCG00000035850) #26	ADSS2 (ENSSSCG00000010874) #27	C1orf100 (ENSSSCG00000053143) #28	ZBTB18 (ENSSSCG00000060083) #29	AKT3 (ENSSSCG00000010872) #30	SDCCAG8 (ENSSSCG00000035136) #32	CEP170 (ENSSSCG00000030502) #33	PLD5 (ENSSSCG00000021132) #34	BECN2 (ENSSSCG00000010868)	MAP1LC3C (ENSSSCG00000054590) #36
Chacoan peccary	MODERN SPECIES	81	LIN9 (ENSCWAG00000003026)	PARP1 (ENSCWAG00000002972)	STUM (ENSCWAG00000002956)	ITPKB (ENSCWAG00000002942)	PSEN2 (ENSCWAG00000002917)	COQ8A (ENSCWAG00000002903)	CDC42BPA (ENSCWAG00000002744)	AHCTF1 (ENSCWAG00000002590) #15	ENSCWAG00000002521	SCCPDH (ENSCWAG00000002496) #16	CNST (ENSCWAG00000002475) #17	TFB2M (ENSCWAG00000002455) #18	SMYD3 (ENSCWAG00000002432) #19	KIF26B (ENSCWAG00000002398) #20	EFCAB2 (ENSCWAG00000002370) #21	HNRNPU (ENSCWAG00000002240) #22	COX20 (ENSCWAG00000002207) #23	ENSCWAG00000002184 #25	CATSPERE (ENSCWAG00000002042) #26	ADSS2 (ENSCWAG00000001982) #27	C1orf100 (ENSCWAG00000001960) #28	ZBTB18 (ENSCWAG00000001944) #29	AKT3 (ENSCWAG00000001916) #30	SDCCAG8 (ENSCWAG00000001897) #32	CEP170 (ENSCWAG00000001838) #33	PLD5 (ENSCWAG00000001768) #34	ENSCWAG00000001728	MAP1LC3C (ENSCWAG00000001710) #36	EXO1 (ENSCWAG00000001682)
Artiodactyla_a	ANCESTRAL SPECIES	26	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00410000028378	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037
Camelidae	ANCESTRAL SPECIES	42	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00410000028378	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b
Arabian camel	MODERN SPECIES	15	PARP1 (ENSCDRG00005004094)	STUM (ENSCDRG00005004232)	ITPKB (ENSCDRG00005004264)	PSEN2 (ENSCDRG00005004293)	COQ8A (ENSCDRG00005004392)	CDC42BPA (ENSCDRG00005004650)	AHCTF1 (ENSCDRG00005008653) #15	ENSCDRG00005009657	SCCPDH (ENSCDRG00005009923) #16	CNST (ENSCDRG00005010140) #17	ENSCDRG00005010260	TFB2M (ENSCDRG00005010290) #18	SMYD3 (ENSCDRG00005010356) #19	KIF26B (ENSCDRG00005010480) #20	EFCAB2 (ENSCDRG00005010782) #21	HNRNPU (ENSCDRG00005010945) #22	COX20 (ENSCDRG00005012045) #23	DESI2 (ENSCDRG00005012108) #25	CATSPERE (ENSCDRG00005012216) #26	ENSCDRG00005012892	ADSS (ENSCDRG00005012920) #27	C1orf100 (ENSCDRG00005013003) #28	ENSCDRG00005013085 #29	ENSCDRG00005013167 #30	SDCCAG8 (ENSCDRG00005013241) #32	CEP170 (ENSCDRG00005013439) #33	PLD5 (ENSCDRG00005013810) #34	BECN2 (ENSCDRG00005014073)	EXO1 (ENSCDRG00005014129)	WDR64 (ENSCDRG00005014181)	CHML (ENSCDRG00005014383)
Alpaca	MODERN SPECIES	2744																HNRNPU (ENSVPAG00000010520) #22	ENSVPAG00000010519	COX20 (ENSVPAG00000010518) #23
Artiodactyla_b	ANCESTRAL SPECIES	26	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00410000028378	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037
Cetacea	ANCESTRAL SPECIES	23	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00410000028378	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00390000008496.j.a.a.b	ENSGT00940000161852 #36	ENSGT00510000047676
Odontoceti	ANCESTRAL SPECIES	24	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000167085.b.a	ENSGT00940000156546 #22	ENSGT00410000028378	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00390000008496.j.a.a.b	ENSGT00940000161852 #36	ENSGT00510000047676
Odontoceti_a	ANCESTRAL SPECIES	27	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000167085.b.a	ENSGT00940000156546 #22	ENSGT00410000028378	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00390000008496.j.a.a.b	ENSGT00940000161852 #36	ENSGT00510000047676
Dolphin	MODERN SPECIES	1024											CNST (ENSTTRG00000005302) #17	TFB2M (ENSTTRG00000005299) #18	SMYD3 (ENSTTRG00000005298) #19	KIF26B (ENSTTRG00000005293) #20	ENSTTRG00000005290 #21	HNRNPU (ENSTTRG00000005281) #22	ENSTTRG00000005276	COX20 (ENSTTRG00000005271) #23
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT01010000223738	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000157251.gb.a.b	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT00940000167085.b.a	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00970000198226	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00940000174587	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00390000008496.j.a.a.b	ENSGT00940000161852 #36
Vaquita	MODERN SPECIES		COQ8A (ENSPSNG00000003309)	ENSPSNG00000003290	CDC42BPA (ENSPSNG00000003179)	AHCTF1 (ENSPSNG00000003012) #15	ENSPSNG00000002969	SCCPDH (ENSPSNG00000002932) #16	CNST (ENSPSNG00000002886) #17	TFB2M (ENSPSNG00000002861) #18	ENSPSNG00000002849	SMYD3 (ENSPSNG00000002836) #19	KIF26B (ENSPSNG00000002808) #20	ENSPSNG00000002787	ENSPSNG00000002773	ENSPSNG00000002754	EFCAB2 (ENSPSNG00000002698) #21	HNRNPU (ENSPSNG00000002595) #22	COX20 (ENSPSNG00000002553) #23	DESI2 (ENSPSNG00000002454) #25	ENSPSNG00000002432	CATSPERE (ENSPSNG00000002409) #26	ADSS2 (ENSPSNG00000002341) #27	ZBTB18 (ENSPSNG00000002322) #29	ENSPSNG00000002237 #30	SDCCAG8 (ENSPSNG00000002144) #32	ENSPSNG00000002116	CEP170 (ENSPSNG00000002060) #33	ENSPSNG00000002004	PLD5 (ENSPSNG00000001962) #34	ENSPSNG00000001933	ENSPSNG00000001924	MAP1LC3C (ENSPSNG00000001915) #36
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00530000063929.a.a.e.a	ENSGT00390000014577.a.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT01010000223738	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000157251.gb.a.b	ENSGT00940000160590 #21	ENSGT00940000167085.b.a	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00970000198226	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00940000174587	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00390000008496.j.a.a.b	ENSGT00940000161852 #36
Beluga whale	MODERN SPECIES	21	CDC42BPA (ENSDLEG00000003384)	ENSDLEG00000011842	ENSDLEG00000011853	AHCTF1 (ENSDLEG00000011885) #15	SCCPDH (ENSDLEG00000012147) #16	CNST (ENSDLEG00000012220) #17	TFB2M (ENSDLEG00000012259) #18	ENSDLEG00000012269	ENSDLEG00000012281	ENSDLEG00000012296 #19	ENSDLEG00000012311	KIF26B (ENSDLEG00000012323) #20	ENSDLEG00000012364	EFCAB2 (ENSDLEG00000012377) #21	ENSDLEG00000012400	HNRNPU (ENSDLEG00000012413) #22	ENSDLEG00000012436 #23	DESI2 (ENSDLEG00000012443) #25	ENSDLEG00000012464	ENSDLEG00000012469 #26	ADSS (ENSDLEG00000012482) #27	C1orf100 (ENSDLEG00000012503) #28	ENSDLEG00000012518 #29	AKT3 (ENSDLEG00000012542) #30	SDCCAG8 (ENSDLEG00000012672) #32	CEP170 (ENSDLEG00000012739) #33	PLD5 (ENSDLEG00000012909) #34	ENSDLEG00000012921	ENSDLEG00000012926	MAP1LC3C (ENSDLEG00000012929) #36	EXO1 (ENSDLEG00000012936)
Narwhal	MODERN SPECIES	304	COQ8A (ENSMMNG00015000182)	CDC42BPA (ENSMMNG00015000504)	ENSMMNG00015001190	AHCTF1 (ENSMMNG00015001241) #15	ENSMMNG00015001366	SCCPDH (ENSMMNG00015001432) #16	CNST (ENSMMNG00015001499) #17	TFB2M (ENSMMNG00015001555) #18	ENSMMNG00015001571	ENSMMNG00015001589	SMYD3 (ENSMMNG00015001622) #19	KIF26B (ENSMMNG00015001645) #20	ENSMMNG00015001686	EFCAB2 (ENSMMNG00015001711) #21	ENSMMNG00015001758	HNRNPU (ENSMMNG00015001837) #22	COX20 (ENSMMNG00015002034) #23	DESI2 (ENSMMNG00015002070) #25	ENSMMNG00015002116	CATSPERE (ENSMMNG00015002177) #26	ADSS2 (ENSMMNG00015002323) #27	ZBTB18 (ENSMMNG00015002362) #29	AKT3 (ENSMMNG00015002390) #30	SDCCAG8 (ENSMMNG00015002446) #32	CEP170 (ENSMMNG00015002570) #33	ENSMMNG00015002619	PLD5 (ENSMMNG00015002650) #34	ENSMMNG00015002712	ENSMMNG00015002733	MAP1LC3C (ENSMMNG00015002739) #36	EXO1 (ENSMMNG00015002760)
Sperm whale	MODERN SPECIES	15	ACBD6 (ENSPCTG00005019211)	XPR1 (ENSPCTG00005019252)	KIAA1614 (ENSPCTG00005019349)	STX6 (ENSPCTG00005019442)	ENSPCTG00005019467	ENSPCTG00005019506	CACNA1E (ENSPCTG00005019592)	ENSPCTG00005021352	CNST (ENSPCTG00005021399) #17	TFB2M (ENSPCTG00005021445) #18	ENSPCTG00005021473	SMYD3 (ENSPCTG00005021502) #19	KIF26B (ENSPCTG00005000340) #20	EFCAB2 (ENSPCTG00005000430) #21	ENSPCTG00005000456	HNRNPU (ENSPCTG00005000493) #22	ENSPCTG00005000694 #23	DESI2 (ENSPCTG00005000724) #25	ENSPCTG00005000757	CATSPERE (ENSPCTG00005000795) #26	ADSS (ENSPCTG00005000901) #27	C1orf100 (ENSPCTG00005000925) #28	ZBTB18 (ENSPCTG00005000940) #29	AKT3 (ENSPCTG00005000992) #30	SDCCAG8 (ENSPCTG00005001062) #32	CEP170 (ENSPCTG00005001113) #33	ENSPCTG00005001193	PLD5 (ENSPCTG00005001235) #34	ENSPCTG00005001305	ENSPCTG00005001333	EXO1 (ENSPCTG00005001388)
Blue whale	MODERN SPECIES		STUM (ENSBMSG00010002214)	ITPKB (ENSBMSG00010002191)	PSEN2 (ENSBMSG00010002147)	COQ8A (ENSBMSG00010002111)	CDC42BPA (ENSBMSG00010001349)	ENSBMSG00010001133	AHCTF1 (ENSBMSG00010000995) #15	ENSBMSG00010000922	SCCPDH (ENSBMSG00010000887) #16	CNST (ENSBMSG00010000841) #17	TFB2M (ENSBMSG00010000824) #18	SMYD3 (ENSBMSG00010000801) #19	KIF26B (ENSBMSG00010000697) #20	ENSBMSG00010000642	EFCAB2 (ENSBMSG00010000616) #21	HNRNPU (ENSBMSG00010000467) #22	COX20 (ENSBMSG00010000364) #23	ENSBMSG00010000350	DESI2 (ENSBMSG00010000280) #25	ENSBMSG00010000258	CATSPERE (ENSBMSG00010000070) #26	ENSBMSG00010000022 #27	C1orf100 (ENSBMSG00010003557) #28	ZBTB18 (ENSBMSG00010003552) #29	AKT3 (ENSBMSG00010003415) #30	ENSBMSG00010003399	SDCCAG8 (ENSBMSG00010003393) #32	CEP170 (ENSBMSG00010003367) #33	ENSBMSG00010003352	ENSBMSG00010003348	ENSBMSG00010003345
Pecora	ANCESTRAL SPECIES	22	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000155028.q.a.c	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b
Yarkand deer	MODERN SPECIES	5	CDC42BPA (ENSCHYG00000010016)	ENSCHYG00000011242	AHCTF1 (ENSCHYG00000011282) #15	ENSCHYG00000011764	ENSCHYG00000011947 #16	ENSCHYG00000011989	ENSCHYG00000012025	CNST (ENSCHYG00000012068) #17	ENSCHYG00000012247 #18	SMYD3 (ENSCHYG00000012418) #19	KIF26B (ENSCHYG00000012555) #20	ENSCHYG00000012805	ENSCHYG00000012934 #21	ENSCHYG00000013023	ENSCHYG00000013042	HNRNPU (ENSCHYG00000013134) #22	COX20 (ENSCHYG00000014922) #23	ENSCHYG00000015006	DESI2 (ENSCHYG00000015061) #25	CATSPERE (ENSCHYG00000015191) #26	ADSS2 (ENSCHYG00000015582) #27	ENSCHYG00000015654	C1orf100 (ENSCHYG00000015712) #28	ZBTB18 (ENSCHYG00000015900) #29	AKT3 (ENSCHYG00000016172) #30	SDCCAG8 (ENSCHYG00000016893) #32	ENSCHYG00000017307	CEP170 (ENSCHYG00000017491) #33	PLD5 (ENSCHYG00000018377) #34	BECN2 (ENSCHYG00000018602)	MAP1LC3C (ENSCHYG00000018633) #36
Percora_a	ANCESTRAL SPECIES	15	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000155028.q.a.c	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT00390000001157.C.kc	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b
Siberian musk deer	MODERN SPECIES	191	ITPKB (ENSMMSG00000001345)	PSEN2 (ENSMMSG00000001360)	COQ8A (ENSMMSG00000001398)	CDC42BPA (ENSMMSG00000001554)	AHCTF1 (ENSMMSG00000002048) #15	ENSMMSG00000002197	SCCPDH (ENSMMSG00000002234) #16	ENSMMSG00000002245	CNST (ENSMMSG00000002263) #17	TFB2M (ENSMMSG00000002316) #18	SMYD3 (ENSMMSG00000002362) #19	KIF26B (ENSMMSG00000002389) #20	ENSMMSG00000002406	EFCAB2 (ENSMMSG00000002421) #21	ENSMMSG00000002446	HNRNPU (ENSMMSG00000002510) #22	ENSMMSG00000003138 #23	ENSMMSG00000003153 #25	CATSPERE (ENSMMSG00000003191) #26	ENSMMSG00000003290 #27	C1orf100 (ENSMMSG00000003308) #28	ENSMMSG00000003313	ENSMMSG00000003326	ZBTB18 (ENSMMSG00000003334) #29	AKT3 (ENSMMSG00000003359) #30	SDCCAG8 (ENSMMSG00000003417) #32	ENSMMSG00000003468	CEP170 (ENSMMSG00000003496) #33
Bovidae	ANCESTRAL SPECIES	15	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000155028.q.a.c	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT00390000001157.C.kc	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b
Caprinae	ANCESTRAL SPECIES	12	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT01100000263504.a.b.b.b.b	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00390000001157.C.kc	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b	ENSGT00390000000747
Goat	MODERN SPECIES	7	CDC42BPA (ENSCHIG00000021878)	ENSCHIG00000010278	AHCTF1 (ENSCHIG00000023392) #15	ENSCHIG00000011366	SCCPDH (ENSCHIG00000022401) #16	ENSCHIG00000011881	ENSCHIG00000022887	CNST (ENSCHIG00000011991) #17	TFB2M (ENSCHIG00000017458) #18	ENSCHIG00000024072	ENSCHIG00000013167 #19	SMYD3 (ENSCHIG00000019856) #19	KIF26B (ENSCHIG00000026425) #20	EFCAB2 (ENSCHIG00000013755) #21	ENSCHIG00000011421	HNRNPU (ENSCHIG00000004900) #22	ENSCHIG00000014790 #23	DESI2 (ENSCHIG00000020086) #25	ENSCHIG00000010596 #26	ADSS2 (ENSCHIG00000019431) #27	C1orf100 (ENSCHIG00000003781) #28	ENSCHIG00000016215 #29	AKT3 (ENSCHIG00000025145) #30	SDCCAG8 (ENSCHIG00000017782) #32	CEP170 (ENSCHIG00000026612) #33	PLD5 (ENSCHIG00000017711) #34	MAP1LC3C (ENSCHIG00000024130) #36	EXO1 (ENSCHIG00000013001)	WDR64 (ENSCHIG00000018653)	CHML (ENSCHIG00000002071)	KMO (ENSCHIG00000018212)
Rambouillet Sheep	MODERN SPECIES	3	STUM (ENSOARG00020019418)	ITPKB (ENSOARG00020019465)	PSEN2 (ENSOARG00020019535)	COQ8A (ENSOARG00020019681)	CDC42BPA (ENSOARG00020019926)	AHCTF1 (ENSOARG00020003268) #15	ENSOARG00020003724	SCCPDH (ENSOARG00020003810) #16	ENSOARG00020003854	TFB2M (ENSOARG00020003896) #18	SMYD3 (ENSOARG00020003928) #19	ENSOARG00020004035	KIF26B (ENSOARG00020004096) #20	EFCAB2 (ENSOARG00020004432) #21	ENSOARG00020004467	HNRNPU (ENSOARG00020004518) #22	COX20 (ENSOARG00020004998) #23	DESI2 (ENSOARG00020005026) #25	ENSOARG00020005072 #26	ENSOARG00020005105 #27	C1orf100 (ENSOARG00020005127) #28	ZBTB18 (ENSOARG00020005168) #29	AKT3 (ENSOARG00020005210) #30	CEP170 (ENSOARG00020005464) #33	PLD5 (ENSOARG00020005705) #34	ENSOARG00020005851	MAP1LC3C (ENSOARG00020005910) #36	EXO1 (ENSOARG00020005940)	WDR64 (ENSOARG00020005994)	KMO (ENSOARG00020006259)	FH (ENSOARG00020006418)
Bovinae	ANCESTRAL SPECIES	12	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000155028.q.a.c	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00960000190292	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037
American bison	MODERN SPECIES	3231	ITPKB (ENSBBBG00000012230)	PSEN2 (ENSBBBG00000012223)	COQ8A (ENSBBBG00000012196)	CDC42BPA (ENSBBBG00000012129)	AHCTF1 (ENSBBBG00000011807) #15	ENSBBBG00000002173	SCCPDH (ENSBBBG00000011719) #16	ENSBBBG00000011707	ENSBBBG00000002158	CNST (ENSBBBG00000011683) #17	TFB2M (ENSBBBG00000011663) #18	SMYD3 (ENSBBBG00000011655) #19	KIF26B (ENSBBBG00000011611) #20	EFCAB2 (ENSBBBG00000007121) #21	ENSBBBG00000011558	HNRNPU (ENSBBBG00000011529) #22	COX20 (ENSBBBG00000011393) #23	DESI2 (ENSBBBG00000011390) #25	CATSPERE (ENSBBBG00000002070) #26	ENSBBBG00000011316	ADSS2 (ENSBBBG00000011309) #27	C1orf100 (ENSBBBG00000011297) #28	ZBTB18 (ENSBBBG00000002053) #29	SRSF1 (ENSBBBG00000011276)	VEZF1 (ENSBBBG00000008437)	CUEDC1 (ENSBBBG00000008544)	MRPS23 (ENSBBBG00000002034)	ENSBBBG00000011204	CCDC182 (ENSBBBG00000011196)	ENSBBBG00000011190	ENSBBBG00000006832
Bos	ANCESTRAL SPECIES	12	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000155028.q.a.c	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT01100000263481.n.a.b.a.a.a.a.a.b.a.a.b.a.a.b.a.b	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00960000190292	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037
Bos_b	ANCESTRAL SPECIES	9	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000155028.q.a.c	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019.a	ENSGT00940000160590 #21	ENSGT01100000263481.n.a.b.a.a.a.a.a.b.a.a.b.a.a.b.a.b	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b
Cow	MODERN SPECIES	7	ITPKB (ENSBTAG00000053007)	PSEN2 (ENSBTAG00000013197)	COQ8A (ENSBTAG00000021880)	CDC42BPA (ENSBTAG00000022777)	AHCTF1 (ENSBTAG00000013949) #15	ENSBTAG00000049714	SCCPDH (ENSBTAG00000003804) #16	H3-3D (ENSBTAG00000011508)	ENSBTAG00000021109	CNST (ENSBTAG00000000511) #17	TFB2M (ENSBTAG00000000072) #18	SMYD3 (ENSBTAG00000033180) #19	KIF26B (ENSBTAG00000012715) #20	EFCAB2 (ENSBTAG00000024555) #21	ENSBTAG00000047437	HNRNPU (ENSBTAG00000007606) #22	COX20 (ENSBTAG00000033136) #23	DESI2 (ENSBTAG00000001478) #25	ENSBTAG00000044066 #26	ADSS2 (ENSBTAG00000013885) #27	C16H1orf100 (ENSBTAG00000033127) #28	ZBTB18 (ENSBTAG00000000385) #29	AKT3 (ENSBTAG00000017788) #30	SDCCAG8 (ENSBTAG00000017775) #32	CEP170 (ENSBTAG00000007566) #33	PLD5 (ENSBTAG00000033056) #34	BECN2 (ENSBTAG00000013700)	MAP1LC3C (ENSBTAG00000012462) #36	EXO1 (ENSBTAG00000009396)	WDR64 (ENSBTAG00000005200)	CHML (ENSBTAG00000010803)
Hybrid Bos Indicus	MODERN SPECIES	7	CDC42BPA (ENSBIXG00005026924)	AHCTF1 (ENSBIXG00005026527) #15	ENSBIXG00005026353	ENSBIXG00005004497	SCCPDH (ENSBIXG00005026257) #16	ENSBIXG00005026229	CNST (ENSBIXG00005026207) #17	TFB2M (ENSBIXG00005026150) #18	SMYD3 (ENSBIXG00005026141) #19	ENSBIXG00005026111	KIF26B (ENSBIXG00005026077) #20	ENSBIXG00005026044	EFCAB2 (ENSBIXG00005026031) #21	ENSBIXG00005004429	ENSBIXG00005025963	HNRNPU (ENSBIXG00005025914) #22	COX20 (ENSBIXG00005025757) #23	DESI2 (ENSBIXG00005004387) #25	CATSPERE (ENSBIXG00005025657) #26	ENSBIXG00005025613	ENSBIXG00005025604	ADSS2 (ENSBIXG00005004358) #27	C1orf100 (ENSBIXG00005025567) #28	ZBTB18 (ENSBIXG00005004344) #29	AKT3 (ENSBIXG00005025439) #30	SDCCAG8 (ENSBIXG00005025302) #32	CEP170 (ENSBIXG00005025170) #33	PLD5 (ENSBIXG00005024812) #34	BECN2 (ENSBIXG00005024712)	MAP1LC3C (ENSBIXG00005024701) #36	EXO1 (ENSBIXG00005024677)
Bos_a	ANCESTRAL SPECIES	8	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000155028.q.a.c	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00510000048856.A	ENSGT00390000002172.A.b	ENSGT00940000161909	ENSGT01100000263481.n.a.b.a.a.a.a.a.b.a.a.b.a.a.b.a.b	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00960000190292	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000008164.d	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037
Domestic yak	MODERN SPECIES	5	CDC42BPA (ENSBGRG00000006051)	AHCTF1 (ENSBGRG00000006477) #15	ENSBGRG00000006504	ENSBGRG00000006527	ENSBGRG00000006630	ENSBGRG00000006639	SCCPDH (ENSBGRG00000006654) #16	ENSBGRG00000006696	CNST (ENSBGRG00000006731) #17	TFB2M (ENSBGRG00000006812) #18	SMYD3 (ENSBGRG00000006939) #19	KIF26B (ENSBGRG00000007186) #20	EFCAB2 (ENSBGRG00000007527) #21	ENSBGRG00000007708	ENSBGRG00000007746	HNRNPU (ENSBGRG00000007853) #22	COX20 (ENSBGRG00000009065) #23	DESI2 (ENSBGRG00000009112) #25	CATSPERE (ENSBGRG00000009169) #26	ENSBGRG00000009367	ADSS2 (ENSBGRG00000009393) #27	C1orf100 (ENSBGRG00000009512) #28	ENSBGRG00000009623	ZBTB18 (ENSBGRG00000009638) #29	AKT3 (ENSBGRG00000009711) #30	SDCCAG8 (ENSBGRG00000010070) #32	ENSBGRG00000010418	CEP170 (ENSBGRG00000010480) #33	PLD5 (ENSBGRG00000010829) #34	BECN2 (ENSBGRG00000011233)	MAP1LC3C (ENSBGRG00000011311) #36
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	2728													KIF26B (ENSBMUG00000007283) #20	EFCAB2 (ENSBMUG00000007294) #21	ENSBMUG00000007304	ENSBMUG00000007328 #22	HNRNPU (ENSBMUG00000007365) #22	COX20 (ENSBMUG00000007383) #23	DESI2 (ENSBMUG00000007407) #25	CATSPERE (ENSBMUG00000007447) #26	ENSBMUG00000007462	ADSS (ENSBMUG00000007466) #27	C1orf100 (ENSBMUG00000007471) #28	ENSBMUG00000007486 #29
Wild yak	MODERN SPECIES	2728												KIF26B (ENSBMUG00000007283) #20	EFCAB2 (ENSBMUG00000007294) #21	ENSBMUG00000007304	ENSBMUG00000007328 #22	HNRNPU (ENSBMUG00000007365) #22	COX20 (ENSBMUG00000007383) #23	DESI2 (ENSBMUG00000007407) #25	CATSPERE (ENSBMUG00000007447) #26	ENSBMUG00000007462	ADSS (ENSBMUG00000007466) #27	C1orf100 (ENSBMUG00000007471) #28	ENSBMUG00000007486 #29
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000156546 #22
Hedgehog	MODERN SPECIES	4822																ENSEEUG00000004383 #22
Common shrew	MODERN SPECIES	6967																ENSSARG00000003202 #22
Atlantogenata	ANCESTRAL SPECIES	44	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b
Afrotheria	ANCESTRAL SPECIES	47	ENSGT00400000023425	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b
Afrotheria_a	ANCESTRAL SPECIES	48	ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32	ENSGT00940000155103.a.b.`b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00390000008164.d	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b
Elephant	MODERN SPECIES	126	LIN9 (ENSLAFG00000002421)	PARP1 (ENSLAFG00000007830)	ENSLAFG00000028339	ENSLAFG00000011453	PSEN2 (ENSLAFG00000007445)	COQ8A (ENSLAFG00000002525)	CDC42BPA (ENSLAFG00000002527)	AHCTF1 (ENSLAFG00000009243) #15	SCCPDH (ENSLAFG00000001357) #16	CNST (ENSLAFG00000016089) #17	TFB2M (ENSLAFG00000015061) #18	ENSLAFG00000009695 #19	ENSLAFG00000027832	KIF26B (ENSLAFG00000016491) #20	EFCAB2 (ENSLAFG00000004376) #21	HNRNPU (ENSLAFG00000021377) #22	DESI2 (ENSLAFG00000005264) #25	CATSPERE (ENSLAFG00000015299) #26	ENSLAFG00000002097 #27	C1orf100 (ENSLAFG00000025946) #28	ZBTB18 (ENSLAFG00000002879) #29	AKT3 (ENSLAFG00000016937) #30	ENSLAFG00000016926 #32	CEP170 (ENSLAFG00000004889) #33	ENSLAFG00000012274	PLD5 (ENSLAFG00000015925) #34	ENSLAFG00000015922 #36	BECN2 (ENSLAFG00000001543)	ENSLAFG00000030313 #36	EXO1 (ENSLAFG00000001542)	WDR64 (ENSLAFG00000009998)
Hyrax	MODERN SPECIES	7063																ENSPCAG00000001127 #22	ENSPCAG00000001104 #23
Tenrec	MODERN SPECIES	8364																HNRNPU (ENSETEG00000014565) #22	COX20 (ENSETEG00000014563) #23
Xenarthra	ANCESTRAL SPECIES	397															ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00410000028378	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00730000111198 #32
Sloth	MODERN SPECIES	7476																HNRNPU (ENSCHOG00000001387) #22	ENSCHOG00000001384	COX20 (ENSCHOG00000001381) #23
Armadillo	MODERN SPECIES	626															EFCAB2 (ENSDNOG00000032002) #21	HNRNPU (ENSDNOG00000000215) #22	ENSDNOG00000044183	DESI2 (ENSDNOG00000043692) #25	ENSDNOG00000003459 #26	ADSS2 (ENSDNOG00000004228) #27	C1orf100 (ENSDNOG00000007513) #28	ZBTB18 (ENSDNOG00000009334) #29	AKT3 (ENSDNOG00000016337) #30	SDCCAG8 (ENSDNOG00000016334) #32
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000000747
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000000747
Diprotodontia	ANCESTRAL SPECIES	7	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000000747	ENSGT00950000183122.A
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00390000003188	ENSGT00940000156058	ENSGT00390000008003	ENSGT00940000156764.a	ENSGT00940000157923	ENSGT00940000156810	ENSGT01030000234517.H.b	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852 #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000000747	ENSGT00950000183122.A
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1035	ENSVURG00010016145	ENSVURG00010016132	ENSVURG00010016121	ENSVURG00010016107	ENSVURG00010016090	ENSVURG00010016076	ENSVURG00010016001	ENSVURG00010015965 #15	ENSVURG00010015938 #16	ENSVURG00010015925 #17	ENSVURG00010015915 #18	ENSVURG00010015901	ENSVURG00010015887	ENSVURG00010015854 #20	ENSVURG00010015829 #21	ENSVURG00010015813 #22	ENSVURG00010015810 #23	ENSVURG00010015784 #25	ENSVURG00010015758 #27	ENSVURG00010015741 #29	ENSVURG00010015721 #30	ENSVURG00010015704	ENSVURG00010015668	ENSVURG00010015620 #33	ENSVURG00010015591 #34	ENSVURG00010015571 #36	ENSVURG00010015550	ENSVURG00010015501	ENSVURG00010015486	ENSVURG00010015474	ENSVURG00010015455
Common wonbat	MODERN SPECIES	1035	ENSVURG00010008828	ENSVURG00010008755	ENSVURG00010008694	ENSVURG00010008553	ENSVURG00010008436 #15	ENSVURG00010008421 #16	ENSVURG00010008373 #17	ENSVURG00010008362 #18	ENSVURG00010008296	ENSVURG00010008267	ENSVURG00010008263	ENSVURG00010008261	ENSVURG00010008148 #19	ENSVURG00010008115 #20	ENSVURG00010008004 #21	ENSVURG00010007907 #22	ENSVURG00010007891 #23	ENSVURG00010007884	ENSVURG00010007837 #25	ENSVURG00010007786 #27	ENSVURG00010007765 #29	ENSVURG00010007733 #30	ENSVURG00010007701	ENSVURG00010007635	ENSVURG00010007584 #33	ENSVURG00010007551 #34	ENSVURG00010007529 #36	ENSVURG00010007516	ENSVURG00010007423	ENSVURG00010007372	ENSVURG00010007345
koala	MODERN SPECIES	12	PARP1 (ENSPCIG00000006436)	STUM (ENSPCIG00000006458)	ITPKB (ENSPCIG00000006460)	PSEN2 (ENSPCIG00000006466)	COQ8A (ENSPCIG00000006475)	CDC42BPA (ENSPCIG00000006500)	AHCTF1 (ENSPCIG00000003367) #15	ENSPCIG00000003346	SCCPDH (ENSPCIG00000003299) #16	CNST (ENSPCIG00000003285) #17	ENSPCIG00000003268 #18	ENSPCIG00000003263	ENSPCIG00000003253 #19	KIF26B (ENSPCIG00000016690) #20	EFCAB2 (ENSPCIG00000013082) #21	HNRNPU (ENSPCIG00000008657) #22	COX20 (ENSPCIG00000035475) #23	ENSPCIG00000035729	DESI2 (ENSPCIG00000008632) #25	ENSPCIG00000032232 #26	ADSS2 (ENSPCIG00000017074) #27	ENSPCIG00000017075	ENSPCIG00000017077 #28	ZBTB18 (ENSPCIG00000006967) #29	AKT3 (ENSPCIG00000006957) #30	ENSPCIG00000006946	ENSPCIG00000037006 #33	ENSPCIG00000022932 #33	PLD5 (ENSPCIG00000000048) #34	EXO1 (ENSPCIG00000000052)	WDR64 (ENSPCIG00000000053)
Wallaby	MODERN SPECIES	5906																HNRNPU (ENSMEUG00000000541) #22
Tasmanian devil	MODERN SPECIES	3	MIXL1 (ENSSHAG00000008490)	LIN9 (ENSSHAG00000008594)	PARP1 (ENSSHAG00000001991)	STUM (ENSSHAG00000025821)	ITPKB (ENSSHAG00000026815)	PSEN2 (ENSSHAG00000010004)	COQ8A (ENSSHAG00000010722)	ENSSHAG00000010887	ENSSHAG00000007631 #15	SCCPDH (ENSSHAG00000023977) #16	CNST (ENSSHAG00000009416) #17	ENSSHAG00000010044 #18	ENSSHAG00000030450 #19	KIF26B (ENSSHAG00000015160) #20	EFCAB2 (ENSSHAG00000028679) #21	HNRNPU (ENSSHAG00000025408) #22	COX20 (ENSSHAG00000027143) #23	DESI2 (ENSSHAG00000023757) #25	ENSSHAG00000032055 #26	ENSSHAG00000004405 #26	ADSS2 (ENSSHAG00000000865) #27	ENSSHAG00000002954 #28	ENSSHAG00000022540	ZBTB18 (ENSSHAG00000025944) #29	AKT3 (ENSSHAG00000012342) #30	ENSSHAG00000013573	CEP170 (ENSSHAG00000014838) #33	PLD5 (ENSSHAG00000008868) #34	MAP1LC3C (ENSSHAG00000027962) #36	EXO1 (ENSSHAG00000010165)	WDR64 (ENSSHAG00000010684)
Opossum	MODERN SPECIES	1	STUM (ENSMODG00000027423)	ITPKB (ENSMODG00000006095)	PSEN2 (ENSMODG00000006114)	COQ8A (ENSMODG00000006151)	CDC42BPA (ENSMODG00000006246)	AHCTF1 (ENSMODG00000006310) #15	ENSMODG00000024676	SCCPDH (ENSMODG00000006356) #16	CNST (ENSMODG00000006372) #17	ENSMODG00000043627	ENSMODG00000038289 #18	ENSMODG00000040525	ENSMODG00000006404 #19	KIF26B (ENSMODG00000006420) #20	ENSMODG00000041630 #21	HNRNPU (ENSMODG00000006515) #22	COX20 (ENSMODG00000024669) #23	DESI2 (ENSMODG00000006533) #25	ENSMODG00000024668 #26	ENSMODG00000041647	ENSMODG00000006559 #27	ENSMODG00000006566 #28	ZBTB18 (ENSMODG00000006570) #29	ENSMODG00000041193	AKT3 (ENSMODG00000006626) #30	ENSMODG00000006642	CEP170 (ENSMODG00000006701) #33	ENSMODG00000051185	ENSMODG00000006765	PLD5 (ENSMODG00000006817) #34	MAP1LC3C (ENSMODG00000006842) #36
Platypus	MODERN SPECIES	10	MIXL1 (ENSOANG00000001484)	LIN9 (ENSOANG00000001486)	PARP1 (ENSOANG00000001488)	ENSOANG00000050466	ENSOANG00000001517	PSEN2 (ENSOANG00000010238)	COQ8A (ENSOANG00000010237)	CDC42BPA (ENSOANG00000010240)	AHCTF1 (ENSOANG00000010242) #15	SCCPDH (ENSOANG00000010244) #16	CNST (ENSOANG00000010245) #17	ENSOANG00000041467 #18	SMYD3 (ENSOANG00000019760) #19	KIF26B (ENSOANG00000010247) #20	ENSOANG00000049283 #21	HNRNPU (ENSOANG00000010249) #22	COX20 (ENSOANG00000049445) #23	DESI2 (ENSOANG00000036528) #25	ADSS2 (ENSOANG00000010254) #27	ENSOANG00000010256 #28	ZBTB18 (ENSOANG00000047323) #29	AKT3 (ENSOANG00000010258) #30	ENSOANG00000010263	CEP170 (ENSOANG00000010265) #33	ENSOANG00000039486 #34	EXO1 (ENSOANG00000043018)	WDR64 (ENSOANG00000010268)	KMO (ENSOANG00000010271)	FH (ENSOANG00000010272)	PIGM (ENSOANG00000040171)	ENSOANG00000010273
Sauria	ANCESTRAL SPECIES	1	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000017728
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT01000000216868	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000017728
tuatara	MODERN SPECIES	456	ENSSPUG00000011876	TLK1 (ENSSPUG00000011852)	DCAF17 (ENSSPUG00000011836)	SRD5A2 (ENSSPUG00000011824)	ENSSPUG00000011760 #15	ENSSPUG00000011744 #15	ENSSPUG00000011711	SCCPDH (ENSSPUG00000011665) #16	CNST (ENSSPUG00000011607) #17	TFB2M (ENSSPUG00000011591) #18	ENSSPUG00000011579 #19	ENSSPUG00000011534 #19	KIF26B (ENSSPUG00000011510) #20	ENSSPUG00000011497	EFCAB2 (ENSSPUG00000011485) #21	HNRNPU (ENSSPUG00000011393) #22	COX20 (ENSSPUG00000011373) #23	DESI2 (ENSSPUG00000011363) #25	ENSSPUG00000011341 #27
Episquamata	ANCESTRAL SPECIES		ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT01000000216868	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000017728
Laterata	ANCESTRAL SPECIES	4	ENSGT00390000003107.a	ENSGT00940000159934	ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT01000000216868	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000017728
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000006682	SRD5A2 (ENSPMRG00000006676)	AHCTF1 (ENSPMRG00000006658) #15	ENSPMRG00000006639	SCCPDH (ENSPMRG00000006623) #16	CNST (ENSPMRG00000006615) #17	TFB2M (ENSPMRG00000006607) #18	ENSPMRG00000006597 #19	ENSPMRG00000006584 #19	ENSPMRG00000006577	ENSPMRG00000006562 #22	ENSPMRG00000006536 #21	KIF26B (ENSPMRG00000006520) #20	ENSPMRG00000006500 #21	ENSPMRG00000006489	ENSPMRG00000006472 #22	COX20 (ENSPMRG00000006456) #23	DESI2 (ENSPMRG00000006448) #25	CATSPERE (ENSPMRG00000006426) #26	ADSS2 (ENSPMRG00000006407) #27	ENSPMRG00000006400	ZBTB18 (ENSPMRG00000006392) #29	AKT3 (ENSPMRG00000006354) #30	ENSPMRG00000006307	CEP170 (ENSPMRG00000006264) #33	PLD5 (ENSPMRG00000006234) #34	MAP1LC3C (ENSPMRG00000006225) #36	ENSPMRG00000006221	EXO1 (ENSPMRG00000006169)	WDR64 (ENSPMRG00000006118)	OPN3 (ENSPMRG00000006099)
Common wall lizard	MODERN SPECIES	11	PLD5 (ENSPMRG00000006234) #34	CEP170 (ENSPMRG00000006264) #33	ENSPMRG00000006307	AKT3 (ENSPMRG00000006354) #30	ZBTB18 (ENSPMRG00000006392) #29	ENSPMRG00000006400	ADSS2 (ENSPMRG00000006407) #27	CATSPERE (ENSPMRG00000006426) #26	DESI2 (ENSPMRG00000006448) #25	COX20 (ENSPMRG00000006456) #23	ENSPMRG00000006472 #22	ENSPMRG00000006489	ENSPMRG00000006500 #21	KIF26B (ENSPMRG00000006520) #20	ENSPMRG00000006536 #21	ENSPMRG00000006562 #22	ENSPMRG00000006577	ENSPMRG00000006584 #19	ENSPMRG00000006597 #19	TFB2M (ENSPMRG00000006607) #18	CNST (ENSPMRG00000006615) #17	SCCPDH (ENSPMRG00000006623) #16	ENSPMRG00000006639	AHCTF1 (ENSPMRG00000006658) #15	SRD5A2 (ENSPMRG00000006676)	ENSPMRG00000006682	MEMO1 (ENSPMRG00000006687)	DPY30 (ENSPMRG00000006692)	ENSPMRG00000006696	ENSPMRG00000006717	SLC30A6 (ENSPMRG00000006847)
Argentine black and white tegu	MODERN SPECIES	2	SPAST (ENSSMRG00000010049)	DPY30 (ENSSMRG00000010051)	MEMO1 (ENSSMRG00000010054)	SRD5A2 (ENSSMRG00000010056)	AHCTF1 (ENSSMRG00000010066) #15	ENSSMRG00000010069	SCCPDH (ENSSMRG00000010070) #16	CNST (ENSSMRG00000010073) #17	TFB2M (ENSSMRG00000010075) #18	ENSSMRG00000010081 #19	ENSSMRG00000010087	ENSSMRG00000010103 #19	KIF26B (ENSSMRG00000010140) #20	ENSSMRG00000010142 #21	ENSSMRG00000010143	HNRNPU (ENSSMRG00000010145) #22	ENSSMRG00000010148	DESI2 (ENSSMRG00000010150) #25	ADSS2 (ENSSMRG00000010155) #27	ENSSMRG00000010156	ZBTB18 (ENSSMRG00000010157) #29	AKT3 (ENSSMRG00000010166) #30	ENSSMRG00000010174	CEP170 (ENSSMRG00000010175) #33	PLD5 (ENSSMRG00000010182) #34	MAP1LC3C (ENSSMRG00000010184) #36	EXO1 (ENSSMRG00000010199)	WDR64 (ENSSMRG00000010200)	ENSSMRG00000010201	OPN3 (ENSSMRG00000010202)	PIGM (ENSSMRG00000010223)
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000017728	ENSGT00940000156661
Elapidae	ANCESTRAL SPECIES		ENSGT00940000159934	ENSGT00940000156258	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00940000168267	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00940000156661	ENSGT00940000154209.a.b
Indian cobra	MODERN SPECIES		QPCT (ENSNNAG00000000467)	SLC30A6 (ENSNNAG00000000500)	SPAST (ENSNNAG00000000560)	DPY30 (ENSNNAG00000000614)	MEMO1 (ENSNNAG00000000623)	SRD5A2 (ENSNNAG00000000638)	AHCTF1 (ENSNNAG00000000655) #15	ENSNNAG00000000689	SCCPDH (ENSNNAG00000000723) #16	CNST (ENSNNAG00000000744) #17	TFB2M (ENSNNAG00000000762) #18	ENSNNAG00000000776 #19	KIF26B (ENSNNAG00000000789) #20	ENSNNAG00000000799	EFCAB2 (ENSNNAG00000000820) #21	HNRNPU (ENSNNAG00000000843) #22	DESI2 (ENSNNAG00000000863) #25	CATSPERE (ENSNNAG00000000905) #26	ADSS2 (ENSNNAG00000000962) #27	ZBTB18 (ENSNNAG00000001001) #29	AKT3 (ENSNNAG00000001025) #30	ENSNNAG00000001076	CEP170 (ENSNNAG00000001186) #33	ENSNNAG00000001285 #34	ENSNNAG00000001291 #34	ENSNNAG00000001300 #34	MAP1LC3C (ENSNNAG00000001315) #36	EXO1 (ENSNNAG00000001347)	WDR64 (ENSNNAG00000001381)	OPN3 (ENSNNAG00000001411)	RGS7 (ENSNNAG00000001452)
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00940000159934	ENSGT00940000156258	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00940000168267	ENSGT00730000111005 #25	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00940000156661	ENSGT00940000154209.a.b	ENSGT00940000161899
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00940000159934	ENSGT00940000156258	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00940000168267	ENSGT00730000111005 #25	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00940000156661	ENSGT00940000154209.a.b	ENSGT00940000161899
Mainland tiger snake	MODERN SPECIES	28	SLC30A6 (ENSNSUG00000016664)	SPAST (ENSNSUG00000016665)	DPY30 (ENSNSUG00000016666)	MEMO1 (ENSNSUG00000016667)	SRD5A2 (ENSNSUG00000016668)	AHCTF1 (ENSNSUG00000016669) #15	ENSNSUG00000016670	SCCPDH (ENSNSUG00000016671) #16	CNST (ENSNSUG00000016673) #17	TFB2M (ENSNSUG00000016750) #18	ENSNSUG00000016751 #19	ENSNSUG00000016752	KIF26B (ENSNSUG00000016753) #20	ENSNSUG00000016754	EFCAB2 (ENSNSUG00000016755) #21	HNRNPU (ENSNSUG00000016756) #22	ENSNSUG00000016757	DESI2 (ENSNSUG00000016758) #25	ADSS2 (ENSNSUG00000016760) #27	ZBTB18 (ENSNSUG00000016761) #29	AKT3 (ENSNSUG00000016762) #30	ENSNSUG00000016876	ENSNSUG00000016877 #33	ENSNSUG00000016878 #33	ENSNSUG00000016879 #33	ENSNSUG00000016880 #34	ENSNSUG00000016882 #34	MAP1LC3C (ENSNSUG00000016883) #36	EXO1 (ENSNSUG00000016884)	ENSNSUG00000016885	ENSNSUG00000016886
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	5	SLC30A6 (ENSPTXG00000000201)	SPAST (ENSPTXG00000000071)	DPY30 (ENSPTXG00000000055)	MEMO1 (ENSPTXG00000014602)	SRD5A2 (ENSPTXG00000014601)	AHCTF1 (ENSPTXG00000014599) #15	ENSPTXG00000014597	SCCPDH (ENSPTXG00000014596) #16	CNST (ENSPTXG00000014594) #17	TFB2M (ENSPTXG00000014592) #18	ENSPTXG00000014590 #19	ENSPTXG00000014587 #19	KIF26B (ENSPTXG00000014586) #20	ENSPTXG00000014584	EFCAB2 (ENSPTXG00000014583) #21	HNRNPU (ENSPTXG00000014582) #22	ENSPTXG00000014581	DESI2 (ENSPTXG00000014580) #25
Eastern brown snake	MODERN SPECIES	77	ENSPTXG00000019067	TOMM40 (ENSPTXG00000019065)	ENSPTXG00000019064	ENSPTXG00000019063	ENSPTXG00000019062	ENSPTXG00000019061	ENSPTXG00000019060	ENSPTXG00000019059	PPP1R37 (ENSPTXG00000019058)	ENSPTXG00000019057	GEMIN7 (ENSPTXG00000019056)	CLASRP (ENSPTXG00000019054)	ENSPTXG00000019053	CLPTM1 (ENSPTXG00000019052)	AXL (ENSPTXG00000019051)	ENSPTXG00000019050 #22	CCDC97 (ENSPTXG00000019049)	ENSPTXG00000019048	EXOSC5 (ENSPTXG00000019047)	BCKDHA (ENSPTXG00000019046)	B3GNT8 (ENSPTXG00000019045)	DMAC2 (ENSPTXG00000019044)	ENSPTXG00000019043	CRX (ENSPTXG00000019042)	ENSPTXG00000019041	ENSPTXG00000019040	ENSPTXG00000019039	NOP53 (ENSPTXG00000019037)	EHD2 (ENSPTXG00000019036)	BICRA (ENSPTXG00000019035)	ZNF541 (ENSPTXG00000019034)
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	3886																HNRNPU (ENSLLTG00000000765) #22	ENSLLTG00000015094
Blue-lipped sea krait	MODERN SPECIES	3560														CLPTM1 (ENSLLTG00000001372)	AXL (ENSLLTG00000001386)	ENSLLTG00000001412 #22	CCDC97 (ENSLLTG00000001432)	TGFB1 (ENSLLTG00000001439)	B9D2 (ENSLLTG00000001445)
Lizard	DUPLICATION
Lizard	MODERN SPECIES	899												ENSACAG00000045590	KIF26B (ENSACAG00000011771) #20	ENSACAG00000043643	EFCAB2 (ENSACAG00000040747) #21	ENSACAG00000037868 #22	HNRNPU (ENSACAG00000004511) #22	COX20 (ENSACAG00000043840) #23	DESI2 (ENSACAG00000004473) #25	ADSS2 (ENSACAG00000004299) #27	ENSACAG00000039315	ENSACAG00000043662	ENSACAG00000039475	ZBTB18 (ENSACAG00000004296) #29	ENSACAG00000034668	AKT3 (ENSACAG00000006720) #30	ENSACAG00000006805	ENSACAG00000039879 #33	ENSACAG00000041458	ENSACAG00000005222 #33	ENSACAG00000040328
Lizard	MODERN SPECIES	899											ENSACAG00000045590	KIF26B (ENSACAG00000011771) #20	ENSACAG00000043643	EFCAB2 (ENSACAG00000040747) #21	ENSACAG00000037868 #22	HNRNPU (ENSACAG00000004511) #22	COX20 (ENSACAG00000043840) #23	DESI2 (ENSACAG00000004473) #25	ADSS2 (ENSACAG00000004299) #27	ENSACAG00000039315	ENSACAG00000043662	ENSACAG00000039475	ZBTB18 (ENSACAG00000004296) #29	ENSACAG00000034668	AKT3 (ENSACAG00000006720) #30	ENSACAG00000006805	ENSACAG00000039879 #33	ENSACAG00000041458	ENSACAG00000005222 #33	ENSACAG00000040328
Archelosauria	ANCESTRAL SPECIES	1	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT01100000263477.B	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b
Cryptodira	ANCESTRAL SPECIES	1	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT01000000216868	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT01100000263477.B	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b
Testudinoidea	ANCESTRAL SPECIES		ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT01000000216868	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT01100000263477.B.a.a	ENSGT00950000183059.b.a.b #34	ENSGT01100000263477.B.a.b.a.b	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037
Emydidae	ANCESTRAL SPECIES		ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT01000000216868	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT01100000263477.B.a.a	ENSGT00950000183059.b.a.b #34	ENSGT01100000263477.B.a.b.a.b	ENSGT01100000263477.B.a.b.a.a	ENSGT01100000263477.B.a.b.b	ENSGT00940000161852.y.a #36
painted turtle	MODERN SPECIES	740													ENSCPBG00000009453 #19	KIF26B (ENSCPBG00000009439) #20	EFCAB2 (ENSCPBG00000009428) #21	HNRNPU (ENSCPBG00000009415) #22	COX20 (ENSCPBG00000009409) #23	DESI2 (ENSCPBG00000009405) #25	CATSPERE (ENSCPBG00000009395) #26	ADSS2 (ENSCPBG00000008911) #27	ENSCPBG00000008896	ZBTB18 (ENSCPBG00000008891) #29	AKT3 (ENSCPBG00000008877) #30	ENSCPBG00000008841	CEP170 (ENSCPBG00000008802) #33	ENSCPBG00000008793	PLD5 (ENSCPBG00000008770) #34	ENSCPBG00000008755	ENSCPBG00000008747	ENSCPBG00000008739	MAP1LC3C (ENSCPBG00000008734) #36
Three-toed box turtle	MODERN SPECIES	31	SPAST (ENSTMTG00000007985)	DPY30 (ENSTMTG00000008082)	MEMO1 (ENSTMTG00000008096)	SRD5A2 (ENSTMTG00000008122)	AHCTF1 (ENSTMTG00000008145) #15	ENSTMTG00000008213	SCCPDH (ENSTMTG00000008269) #16	CNST (ENSTMTG00000008293) #17	TFB2M (ENSTMTG00000008308) #18	ENSTMTG00000008323 #19	ENSTMTG00000008337 #19	KIF26B (ENSTMTG00000008353) #20	ENSTMTG00000008402	ENSTMTG00000008415	EFCAB2 (ENSTMTG00000008442) #21	HNRNPU (ENSTMTG00000008554) #22	COX20 (ENSTMTG00000008601) #23	DESI2 (ENSTMTG00000008608) #25	ENSTMTG00000008625	ADSS2 (ENSTMTG00000008677) #27	ZBTB18 (ENSTMTG00000008708) #29	AKT3 (ENSTMTG00000008734) #30	ENSTMTG00000008872	ENSTMTG00000009362 #33	ENSTMTG00000009377 #33	ENSTMTG00000009398 #33	ENSTMTG00000009425	PLD5 (ENSTMTG00000009450) #34	ENSTMTG00000009546	ENSTMTG00000009558	ENSTMTG00000009581
Testudinidae	ANCESTRAL SPECIES	6	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT01000000216868	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT01100000263477.B.a.a	ENSGT00950000183059.b.a.b.i #34	ENSGT00950000183059.b.a.b.j #34	ENSGT01100000263477.B.a.b.a.b	ENSGT00940000161852.y.a #36	ENSGT00510000047676
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005009631	SPAST (ENSGEVG00005009573)	DPY30 (ENSGEVG00005009510)	MEMO1 (ENSGEVG00005009467)	SRD5A2 (ENSGEVG00005009403)	AHCTF1 (ENSGEVG00005009292) #15	ENSGEVG00005009122	SCCPDH (ENSGEVG00005009063) #16	CNST (ENSGEVG00005009018) #17	TFB2M (ENSGEVG00005008934) #18	ENSGEVG00005008911 #19	ENSGEVG00005008863 #19	KIF26B (ENSGEVG00005008743) #20	ENSGEVG00005008713	EFCAB2 (ENSGEVG00005008659) #21	HNRNPU (ENSGEVG00005008607) #22	COX20 (ENSGEVG00005008584) #23	DESI2 (ENSGEVG00005008575) #25	ENSGEVG00005008540 #26	ADSS2 (ENSGEVG00005008513) #27	ENSGEVG00005008494	ZBTB18 (ENSGEVG00005008483) #29	AKT3 (ENSGEVG00005008378) #30	ENSGEVG00005008314	CEP170 (ENSGEVG00005007486) #33	ENSGEVG00005007329	ENSGEVG00005007295 #34	ENSGEVG00005007282 #34	ENSGEVG00005007255	MAP1LC3C (ENSGEVG00005007218) #36	EXO1 (ENSGEVG00005007131)
Abingdon island giant tortoise	MODERN SPECIES	2165				SRD5A2 (ENSCABG00000018831)	AHCTF1 (ENSCABG00000018858) #15	ENSCABG00000019102	SCCPDH (ENSCABG00000019105) #16	CNST (ENSCABG00000019108) #17	ENSCABG00000019110	TFB2M (ENSCABG00000019111) #18	ENSCABG00000019112 #19	ENSCABG00000019116 #19	KIF26B (ENSCABG00000019123) #20	ENSCABG00000019128	EFCAB2 (ENSCABG00000019130) #21	HNRNPU (ENSCABG00000019135) #22	COX20 (ENSCABG00000019207) #23	DESI2 (ENSCABG00000019209) #25	ENSCABG00000019211	ADSS2 (ENSCABG00000019217) #27	ZBTB18 (ENSCABG00000019220) #29	AKT3 (ENSCABG00000019225) #30	ENSCABG00000019231	ENSCABG00000019240 #33	ENSCABG00000019241 #33	ENSCABG00000019243 #33	ENSCABG00000019244
Chinese turtle	MODERN SPECIES	2036	QPCT (ENSPSIG00000005864)	SLC30A6 (ENSPSIG00000005742)	DPY30 (ENSPSIG00000005730)	ENSPSIG00000005692	MEMO1 (ENSPSIG00000005651)	SRD5A2 (ENSPSIG00000005637)	AHCTF1 (ENSPSIG00000005629) #15	ENSPSIG00000005576	SCCPDH (ENSPSIG00000005523) #16	CNST (ENSPSIG00000005514) #17	TFB2M (ENSPSIG00000005507) #18	ENSPSIG00000005502 #19	ENSPSIG00000005494 #19	KIF26B (ENSPSIG00000005452) #20	EFCAB2 (ENSPSIG00000005428) #21	HNRNPU (ENSPSIG00000005253) #22	DESI2 (ENSPSIG00000005222) #25	COX20 (ENSPSIG00000005206) #23	ADSS2 (ENSPSIG00000005131) #27	AKT3 (ENSPSIG00000005085) #30	ENSPSIG00000005057	ENSPSIG00000004976	CEP170 (ENSPSIG00000004932) #33	PLD5 (ENSPSIG00000004919) #34
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.t #19	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT01100000263477.B	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b
Australian saltwater crocodile	MODERN SPECIES	60	QPCT (ENSCPRG00005013490)	SLC30A6 (ENSCPRG00005013494)	SPAST (ENSCPRG00005013518)	ENSCPRG00005013712	MEMO1 (ENSCPRG00005013722)	SRD5A2 (ENSCPRG00005013745)	AHCTF1 (ENSCPRG00005013777) #15	ENSCPRG00005013782	SCCPDH (ENSCPRG00005013798) #16	CNST (ENSCPRG00005013810) #17	TFB2M (ENSCPRG00005013817) #18	ENSCPRG00005013821 #19	ENSCPRG00005013850 #19	KIF26B (ENSCPRG00005013894) #20	EFCAB2 (ENSCPRG00005013903) #21	HNRNPU (ENSCPRG00005013940) #22	COX20 (ENSCPRG00005014229) #23	ENSCPRG00005014235	DESI2 (ENSCPRG00005014238) #25	ADSS2 (ENSCPRG00005014241) #27	C1orf100 (ENSCPRG00005014243) #28	ZBTB18 (ENSCPRG00005014249) #29	AKT3 (ENSCPRG00005014254) #30	ENSCPRG00005014262	CEP170 (ENSCPRG00005014277) #33	ENSCPRG00005014303	PLD5 (ENSCPRG00005014316) #34	MAP1LC3C (ENSCPRG00005014326) #36	EXO1 (ENSCPRG00005014340)	WDR64 (ENSCPRG00005014354)	OPN3 (ENSCPRG00005014373)
Aves	ANCESTRAL SPECIES	12	ENSGT00940000159934	ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.s #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162691 #26	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000017728
African ostrich	MODERN SPECIES	1025	PRKD3 (ENSSCUG00000015563)	QPCT (ENSSCUG00000015558)	SLC30A6 (ENSSCUG00000015552)	SPAST (ENSSCUG00000015530)	MEMO1 (ENSSCUG00000015523)	SRD5A2 (ENSSCUG00000015520)	AHCTF1 (ENSSCUG00000015510) #15	ENSSCUG00000015505	SCCPDH (ENSSCUG00000015503) #16	CNST (ENSSCUG00000015499) #17	TFB2M (ENSSCUG00000015498) #18	ENSSCUG00000015495	SMYD3 (ENSSCUG00000015492) #19	KIF26B (ENSSCUG00000015488) #20	ENSSCUG00000015484	HNRNPU (ENSSCUG00000015463) #22	ENSSCUG00000015444	DESI2 (ENSSCUG00000015440) #25	CATSPERE (ENSSCUG00000015433) #26	ADSS2 (ENSSCUG00000015425) #27	C1orf100 (ENSSCUG00000015415) #28
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.s.b.b #19	ENSGT00940000156766.s.b.a #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00960000189424	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00960000189749	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.s.b.b #19	ENSGT00940000156766.s.b.a #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00960000189424	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00960000189749	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b
Anatidae	ANCESTRAL SPECIES	11	ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.s.b.b #19	ENSGT00940000156766.s.b.a #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00730000111005 #25	ENSGT00390000015553.a.a.b #27	ENSGT00390000017364 #28	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000017728	ENSGT00940000156661	ENSGT00940000154209.a.b
Duck	MODERN SPECIES	21	ENSAPLG00000017901	PRKD3 (ENSAPLG00000014444)	QPCT (ENSAPLG00000014830)	SLC30A6 (ENSAPLG00000014847)	SPAST (ENSAPLG00000015351)	MEMO1 (ENSAPLG00000005693)	SRD5A2 (ENSAPLG00000025223)	AHCTF1 (ENSAPLG00000005120) #15	ENSAPLG00000026920	SCCPDH (ENSAPLG00000004893) #16	CNST (ENSAPLG00000014445) #17	SMYD3 (ENSAPLG00000028273) #19	ENSAPLG00000019495	KIF26B (ENSAPLG00000012419) #20	EFCAB2 (ENSAPLG00000012390) #21	HNRNPU (ENSAPLG00000012268) #22	DESI2 (ENSAPLG00000012155) #25	ADSS2 (ENSAPLG00000011820) #27	ENSAPLG00000011818 #28	ZBTB18 (ENSAPLG00000002367) #29	AKT3 (ENSAPLG00000011477) #30	ENSAPLG00000011088	CEP170 (ENSAPLG00000010551) #33	PLD5 (ENSAPLG00000015142) #34	ENSAPLG00000030016	MAP1LC3C (ENSAPLG00000023202) #36	EXO1 (ENSAPLG00000015042)	OPN3 (ENSAPLG00000014871)	PIGM (ENSAPLG00000028189)	RGS7 (ENSAPLG00000014655)	GREM2 (ENSAPLG00000001754)
Pink-footed goose	DUPLICATION
Pink-footed goose	MODERN SPECIES	1078																ENSABRG00000013521 #22
Pink-footed goose	MODERN SPECIES	144	ENSABRG00000019579	SPAST (ENSABRG00000019373)	DPY30 (ENSABRG00000019342)	MEMO1 (ENSABRG00000019325)	SRD5A2 (ENSABRG00000019311)	AHCTF1 (ENSABRG00000019174) #15	ENSABRG00000019135	SCCPDH (ENSABRG00000019132) #16	CNST (ENSABRG00000019130) #17	ENSABRG00000019127	TFB2M (ENSABRG00000019121) #18	ENSABRG00000019109 #19	ENSABRG00000019096 #19	KIF26B (ENSABRG00000019076) #20	EFCAB2 (ENSABRG00000019055) #21	HNRNPU (ENSABRG00000018353) #22	ENSABRG00000018288	COX20 (ENSABRG00000018284) #23
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00390000003107.a	ENSGT00940000159934	ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.s.b.b #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00960000189749	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000017728	ENSGT00940000156661
Japanese quail	MODERN SPECIES	21	SLC30A6 (ENSCJPG00005013523)	SPAST (ENSCJPG00005013634)	ENSCJPG00005013795	DPY30 (ENSCJPG00005013796)	MEMO1 (ENSCJPG00005013797)	SRD5A2 (ENSCJPG00005013798)	AHCTF1 (ENSCJPG00005013799) #15	ENSCJPG00005013800	SCCPDH (ENSCJPG00005013801) #16	CNST (ENSCJPG00005013802) #17	TFB2M (ENSCJPG00005013803) #18	ENSCJPG00005013804 #19	ENSCJPG00005013805 #19	KIF26B (ENSCJPG00005013806) #20	ENSCJPG00005013807	HNRNPU (ENSCJPG00005013808) #22	COX20 (ENSCJPG00005013809) #23	DESI2 (ENSCJPG00005013810) #25	ADSS2 (ENSCJPG00005013811) #27	ZBTB18 (ENSCJPG00005013847) #29	AKT3 (ENSCJPG00005013848) #30	ENSCJPG00005013849	CEP170 (ENSCJPG00005013850) #33	PLD5 (ENSCJPG00005013854) #34	MAP1LC3C (ENSCJPG00005013857) #36	EXO1 (ENSCJPG00005013858)	ENSCJPG00005013860	OPN3 (ENSCJPG00005013861)	PIGM (ENSCJPG00005013862)	RGS7 (ENSCJPG00005013863)	GREM2 (ENSCJPG00005013864)
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00390000003107.a	ENSGT00940000159934	ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00940000163104.e	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.s.b.b #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00960000189749	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000017728	ENSGT00940000156661
Chicken	MODERN SPECIES	22	QPCT (ENSGALG00010007169)	SLC30A6 (ENSGALG00010007203)	SPAST (ENSGALG00010007251)	ENSGALG00010007258	DPY30 (ENSGALG00010007275)	MEMO1 (ENSGALG00010007365)	SRD5A2 (ENSGALG00010007017)	AHCTF1 (ENSGALG00010010125) #15	ENSGALG00010010164	SCCPDH (ENSGALG00010010197) #16	CNST (ENSGALG00010010338) #17	TFB2M (ENSGALG00010010346) #18	SMYD3 (ENSGALG00010006922) #19	KIF26B (ENSGALG00010006958) #20	EFCAB2 (ENSGALG00010006865) #21	HNRNPU (ENSGALG00010008192) #22	COX20 (ENSGALG00010008226) #23	DESI2 (ENSGALG00010008257) #25	C1orf101 (ENSGALG00010008263)	ADSS2 (ENSGALG00010008285) #27	ZBTB18 (ENSGALG00010008312) #29	AKT3 (ENSGALG00010008323) #30	ENSGALG00010008348	ENSGALG00010008356 #33	ENSGALG00010010897 #33	ENSGALG00010008364	ENSGALG00010008367	PLD5 (ENSGALG00010008383) #34	MAP1LC3C (ENSGALG00010008400) #36	EXO1 (ENSGALG00010008422)	WDR64 (ENSGALG00010008442)
Turkey	MODERN SPECIES	11	ENSMGAG00000021226	ENSMGAG00000011525	ENSMGAG00000023018 #36	ENSMGAG00000021812 #34	ENSMGAG00000021098	ENSMGAG00000011504 #33	ENSMGAG00000018116 #33	ENSMGAG00000018419	ENSMGAG00000011477 #30	ENSMGAG00000011487	ENSMGAG00000011476 #29	ENSMGAG00000011463 #27	ENSMGAG00000021050 #27	ENSMGAG00000021227 #26	ENSMGAG00000017863 #25	ENSMGAG00000011427 #22	ENSMGAG00000011449 #23	EFCAB2 (ENSMGAG00000011423) #21	ENSMGAG00000011412 #20	ENSMGAG00000011410 #19	ENSMGAG00000020397 #19	ENSMGAG00000018106	ENSMGAG00000011408 #18	ENSMGAG00000011401 #17	ENSMGAG00000019870	ENSMGAG00000011391 #16	ENSMGAG00000011388	ENSMGAG00000011377 #15	ENSMGAG00000020031	ENSMGAG00000011369	ENSMGAG00000011362
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000159934	ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.s.b.b #19	ENSGT00940000156766.s.b.a #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00960000189424	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000017728	ENSGT00940000156661
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00940000159934	ENSGT00940000156258	ENSGT01050000245279	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.s.b.b #19	ENSGT00940000156766.s.b.a #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00960000189424	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00940000161852.y.a #36	ENSGT00510000047676	ENSGT00940000160037	ENSGT01100000263502.A.a.b	ENSGT00390000017728	ENSGT00940000156661
Golden eagle	MODERN SPECIES	4	QPCT (ENSACCG00020008243)	SLC30A6 (ENSACCG00020008281)	SPAST (ENSACCG00020008305)	ENSACCG00020008336	DPY30 (ENSACCG00020008349)	MEMO1 (ENSACCG00020008364)	SRD5A2 (ENSACCG00020008376)	AHCTF1 (ENSACCG00020008399) #15	SCCPDH (ENSACCG00020008443) #16	CNST (ENSACCG00020008462) #17	TFB2M (ENSACCG00020008479) #18	ENSACCG00020008515 #19	ENSACCG00020008547 #19	KIF26B (ENSACCG00020008572) #20	EFCAB2 (ENSACCG00020008604) #21	HNRNPU (ENSACCG00020008633) #22	ENSACCG00020008665	COX20 (ENSACCG00020008679) #23	DESI2 (ENSACCG00020008693) #25	ADSS2 (ENSACCG00020008703) #27	ENSACCG00020008728	ZBTB18 (ENSACCG00020008740) #29	AKT3 (ENSACCG00020008750) #30	ENSACCG00020008818	CEP170 (ENSACCG00020008889) #33	PLD5 (ENSACCG00020008933) #34	ENSACCG00020008958	MAP1LC3C (ENSACCG00020008971) #36	EXO1 (ENSACCG00020008994)	WDR64 (ENSACCG00020009035)	OPN3 (ENSACCG00020009054)
Kakapo	MODERN SPECIES	2	SLC30A6 (ENSSHBG00005021129)	SPAST (ENSSHBG00005021126)	ENSSHBG00005021124	DPY30 (ENSSHBG00005021123)	MEMO1 (ENSSHBG00005021122)	SRD5A2 (ENSSHBG00005021120)	AHCTF1 (ENSSHBG00005021118) #15	SCCPDH (ENSSHBG00005021115) #16	CNST (ENSSHBG00005021111) #17	ENSSHBG00005021110	TFB2M (ENSSHBG00005021109) #18	ENSSHBG00005021108 #19	ENSSHBG00005021106 #19	KIF26B (ENSSHBG00005021103) #20	EFCAB2 (ENSSHBG00005021101) #21	HNRNPU (ENSSHBG00005021100) #22	COX20 (ENSSHBG00005021099) #23	DESI2 (ENSSHBG00005021098) #25	ADSS2 (ENSSHBG00005021096) #27	ZBTB18 (ENSSHBG00005021093) #29	AKT3 (ENSSHBG00005021092) #30	ENSSHBG00005021079	CEP170 (ENSSHBG00005021076) #33	PLD5 (ENSSHBG00005021070) #34	MAP1LC3C (ENSSHBG00005021069) #36	EXO1 (ENSSHBG00005021067)	ENSSHBG00005021065	OPN3 (ENSSHBG00005021063)	PIGM (ENSSHBG00005021062)	RGS7 (ENSSHBG00005021061)	GREM2 (ENSSHBG00005021059)
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00390000003107.a	ENSGT00940000159934	ENSGT01050000245279	ENSGT00940000156258	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.s.b.b #19	ENSGT00940000156766.s.b.a #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000018686	ENSGT00390000006493	ENSGT00940000157284	ENSGT00390000001121	ENSGT00940000157084	ENSGT00940000158672	ENSGT00950000182898.a.a.a.a.b
Great tit	MODERN SPECIES	22	TMEM151B (ENSPMJG00000014801)	NFKBIE (ENSPMJG00000014802)	SLC35B2 (ENSPMJG00000014803)	HSP90AB1 (ENSPMJG00000014804)	SLC29A1 (ENSPMJG00000014806)	CAPN11 (ENSPMJG00000014855)	TMEM63B (ENSPMJG00000014856)	MRPL14 (ENSPMJG00000015068)	SCCPDH (ENSPMJG00000015069) #16	CNST (ENSPMJG00000015070) #17	TFB2M (ENSPMJG00000015071) #18	ENSPMJG00000015072 #19	ENSPMJG00000015073 #19	KIF26B (ENSPMJG00000015074) #20	EFCAB2 (ENSPMJG00000015075) #21	HNRNPU (ENSPMJG00000015077) #22	COX20 (ENSPMJG00000015078) #23	DESI2 (ENSPMJG00000015079) #25	ADSS2 (ENSPMJG00000015080) #27	ENSPMJG00000015081	ENSPMJG00000015083	ZBTB18 (ENSPMJG00000015085) #29	VEGFA (ENSPMJG00000015091)	MRPS18A (ENSPMJG00000015093)	RSPH9 (ENSPMJG00000015094)	PLD5 (ENSPMJG00000015095) #34	CEP170 (ENSPMJG00000015097) #33	ENSPMJG00000015098	AKT3 (ENSPMJG00000015099) #30	ENSPMJG00000015100 #15	SRD5A2 (ENSPMJG00000015102)
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00390000003107.a	ENSGT00940000159934	ENSGT01050000245279	ENSGT00940000156258	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.s.b.b #19	ENSGT00940000156766.s.b.a #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000018686	ENSGT00390000006493	ENSGT00940000157284	ENSGT00390000001121	ENSGT00940000157084	ENSGT00940000158672	ENSGT00950000182898.a.a.a.a.b
Flycatcher	MODERN SPECIES	21	SLC30A6 (ENSFALG00000011718)	SPAST (ENSFALG00000011673)	ENSFALG00000024354	DPY30 (ENSFALG00000023125)	MEMO1 (ENSFALG00000011653)	SRD5A2 (ENSFALG00000025876)	ENSFALG00000011625 #15	ENSFALG00000027448 #15	SCCPDH (ENSFALG00000023810) #16	CNST (ENSFALG00000011587) #17	TFB2M (ENSFALG00000011573) #18	ENSFALG00000023592 #19	ENSFALG00000011563 #19	KIF26B (ENSFALG00000011555) #20	EFCAB2 (ENSFALG00000011546) #21	HNRNPU (ENSFALG00000011528) #22	DESI2 (ENSFALG00000011507) #25	ADSS2 (ENSFALG00000011484) #27	ZBTB18 (ENSFALG00000011473) #29	AKT3 (ENSFALG00000011439) #30	ENSFALG00000011420	CEP170 (ENSFALG00000011398) #33	PLD5 (ENSFALG00000011379) #34	RSPH9 (ENSFALG00000025305)	MRPS18A (ENSFALG00000011356)	VEGFA (ENSFALG00000027112)	MRPL14 (ENSFALG00000011324)	TMEM63B (ENSFALG00000011313)	CAPN11 (ENSFALG00000011310)	SLC29A1 (ENSFALG00000011304)	HSP90AB1 (ENSFALG00000011300)
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000159934	ENSGT01050000245279	ENSGT00940000156258	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900.i #15	ENSGT00390000018900.j #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.s.b.b #19	ENSGT00940000156766.s.b.a #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000018686	ENSGT00390000006493	ENSGT00940000157284	ENSGT00390000001121	ENSGT00940000157084	ENSGT00940000158672	ENSGT00950000182898.a.a.a.a.b
Medium ground finch	MODERN SPECIES	2	QPCT (ENSGFOG00000000545)	SLC30A6 (ENSGFOG00000000511)	SPAST (ENSGFOG00000000186)	ENSGFOG00000000153	DPY30 (ENSGFOG00000000149)	MEMO1 (ENSGFOG00000000144)	SRD5A2 (ENSGFOG00000000139)	AHCTF1 (ENSGFOG00000000080) #15	SCCPDH (ENSGFOG00000000059) #16	CNST (ENSGFOG00000000055) #17	ENSGFOG00000000051 #18	ENSGFOG00000000048 #19	ENSGFOG00000000043 #19	KIF26B (ENSGFOG00000000039) #20	EFCAB2 (ENSGFOG00000000037) #21	HNRNPU (ENSGFOG00000009639) #22	COX20 (ENSGFOG00000009494) #23	DESI2 (ENSGFOG00000009482) #25	ADSS2 (ENSGFOG00000009201) #27	ZBTB18 (ENSGFOG00000009192) #29	AKT3 (ENSGFOG00000009182) #30	ENSGFOG00000009156	CEP170 (ENSGFOG00000009123) #33	PLD5 (ENSGFOG00000009114) #34	MRPS18A (ENSGFOG00000009108)	RSPH9 (ENSGFOG00000009102)	VEGFA (ENSGFOG00000008871)	MRPL14 (ENSGFOG00000008855)	TMEM63B (ENSGFOG00000008835)	CAPN11 (ENSGFOG00000008822)	SLC29A1 (ENSGFOG00000008809)
Passeroidea	ANCESTRAL SPECIES		ENSGT00390000003107.a	ENSGT00940000159934	ENSGT01050000245279	ENSGT00940000156258	ENSGT00390000008808	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900.j.b #15	ENSGT00390000018900.j.a #15	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766.s.b.b #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00390000015553.a.a.b #27	ENSGT00940000155092.b #29	ENSGT00940000157060 #30	ENSGT00940000164292	ENSGT00940000155103.a.b #33	ENSGT00950000183059.b.a.b #34	ENSGT00390000018686	ENSGT00390000006493	ENSGT00940000157284	ENSGT00390000001121	ENSGT00940000157084	ENSGT00940000158672	ENSGT00950000182898.a.a.a.a.b
Zebra finch	MODERN SPECIES	23	YIPF3 (ENSTGUG00000009133)	POLR1C (ENSTGUG00000009159)	XPO5 (ENSTGUG00000009168)	POLH (ENSTGUG00000009195)	GTPBP2 (ENSTGUG00000009198)	MAD2L1BP (ENSTGUG00000025478)	ENSTGUG00000009224	ENSTGUG00000009240	ENSTGUG00000009271	CNST (ENSTGUG00000008403) #17	TFB2M (ENSTGUG00000008396) #18	ENSTGUG00000021382 #19	ENSTGUG00000029207 #19	KIF26B (ENSTGUG00000008377) #20	EFCAB2 (ENSTGUG00000019448) #21	HNRNPU (ENSTGUG00000008309) #22	DESI2 (ENSTGUG00000024880) #25	ADSS2 (ENSTGUG00000008252) #27	ZBTB18 (ENSTGUG00000008247) #29	AKT3 (ENSTGUG00000008212) #30	ENSTGUG00000008192	CEP170 (ENSTGUG00000008164) #33	PLD5 (ENSTGUG00000008155) #34	RSPH9 (ENSTGUG00000008150)	MRPS18A (ENSTGUG00000021976)	VEGFA (ENSTGUG00000008137)	MRPL14 (ENSTGUG00000008134)	TMEM63B (ENSTGUG00000008105)	CAPN11 (ENSTGUG00000008009)	SLC29A1 (ENSTGUG00000007972)	ENSTGUG00000026786
Common canary	MODERN SPECIES	1	QPCT (ENSSCAG00000012084)	SLC30A6 (ENSSCAG00000012103)	SPAST (ENSSCAG00000012196)	DPY30 (ENSSCAG00000012263)	MEMO1 (ENSSCAG00000012271)	SRD5A2 (ENSSCAG00000012273)	ENSSCAG00000012351 #15	ENSSCAG00000012619 #15	SCCPDH (ENSSCAG00000012649) #16	CNST (ENSSCAG00000012662) #17	ENSSCAG00000012664 #18	ENSSCAG00000012669 #19	ENSSCAG00000012675 #19	KIF26B (ENSSCAG00000012689) #20	EFCAB2 (ENSSCAG00000012708) #21	HNRNPU (ENSSCAG00000012822) #22	COX20 (ENSSCAG00000013270) #23	DESI2 (ENSSCAG00000013277) #25	ADSS2 (ENSSCAG00000013319) #27	ZBTB18 (ENSSCAG00000013375) #29	AKT3 (ENSSCAG00000013390) #30	ENSSCAG00000013409	CEP170 (ENSSCAG00000013445) #33	PLD5 (ENSSCAG00000013478) #34	RSPH9 (ENSSCAG00000013509)	MRPS18A (ENSSCAG00000013545)	VEGFA (ENSSCAG00000013564)	MRPL14 (ENSSCAG00000013591)	TMEM63B (ENSSCAG00000013598)	CAPN11 (ENSSCAG00000013612)	SLC29A1 (ENSSCAG00000013635)
Anura	ANCESTRAL SPECIES	63	ENSGT00940000155172	ENSGT00390000018879	ENSGT00390000012017	ENSGT00940000157846	ENSGT00390000008808	ENSGT00940000157923	ENSGT00390000006408	ENSGT00950000182886.b.a	ENSGT00390000018900 #15	ENSGT00390000004799.c #16	ENSGT00390000005861 #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000016158 #23	ENSGT00730000111005 #25	ENSGT00940000162752	ENSGT00940000156258	ENSGT00530000063558.B	ENSGT00390000011877	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00390000013943	ENSGT00940000155089	ENSGT01090000260098.A	ENSGT00390000011342	ENSGT00940000155621	ENSGT00940000158236
Frog	MODERN SPECIES	5	epm2a (ENSXETG00000017691)	ENSXETG00000048985	utrn (ENSXETG00000022290)	stx11 (ENSXETG00000041475)	ENSXETG00000048087	c1orf198 (ENSXETG00000049317)	ttc13 (ENSXETG00000022287)	arv1 (ENSXETG00000026359)	fam89a (ENSXETG00000039518)	vit (ENSXETG00000022285)	opn6a (ENSXETG00000022282)	akap12 (ENSXETG00000037915)	mthfd1l (ENSXETG00000013956)	plekhg1 (ENSXETG00000007619)	iyd (ENSXETG00000011383)	hnrnpu (ENSXETG00000011386) #22	desi2 (ENSXETG00000045919) #25	ttll2 (ENSXETG00000027373)	spast (ENSXETG00000011392)	fndc1 (ENSXETG00000035120)	sod2 (ENSXETG00000021180)	wtap (ENSXETG00000021175)	acat2 (ENSXETG00000021174)	tcp1 (ENSXETG00000038604)	igf2r (ENSXETG00000021138)	slc22a2 (ENSXETG00000033727)	gje1 (ENSXETG00000049272)	adgrg6 (ENSXETG00000030163)	vta1 (ENSXETG00000021109)	oprm1 (ENSXETG00000041984)	ENSXETG00000049101
Leishan spiny toad	MODERN SPECIES	7	CCN2 (ENSLLEG00000008251)	ENSLLEG00000008629	ENSLLEG00000008657	ENSLLEG00000008997	PDE10A (ENSLLEG00000009134)	ENSLLEG00000009540 #16	CNST (ENSLLEG00000009811) #17	TFB2M (ENSLLEG00000010015) #18	ENSLLEG00000010101 #19	ENSLLEG00000010211	ENSLLEG00000010348 #19	KIF26B (ENSLLEG00000011967) #20	EFCAB2 (ENSLLEG00000012195) #21	ENSLLEG00000012240	ENSLLEG00000012258	HNRNPU (ENSLLEG00000012297) #22	COX20 (ENSLLEG00000012663) #23	ENSLLEG00000013202	ENSLLEG00000013220	DESI2 (ENSLLEG00000013238) #25	TTLL2 (ENSLLEG00000013270)	ENSLLEG00000013284	SPAST (ENSLLEG00000013335)	ENSLLEG00000013438	ENSLLEG00000013589	ENSLLEG00000013612	ENSLLEG00000013637	RPS12 (ENSLLEG00000013657)	ENSLLEG00000013799	ENSLLEG00000013843	ENSLLEG00000014174
Coelacanth	MODERN SPECIES	365	RBBP9 (ENSLACG00000009190)	POLR3F (ENSLACG00000009371)	DZANK1 (ENSLACG00000010296)	KAT14 (ENSLACG00000010730)	OVOL2 (ENSLACG00000011247)	MGME1 (ENSLACG00000011634)	SNX5 (ENSLACG00000011883)	RRBP1 (ENSLACG00000012685)	DSTN (ENSLACG00000013637) ##37	ENSLACG00000022489	ENSLACG00000015703	SMYD3 (ENSLACG00000015973) #19	KIF26B (ENSLACG00000016432) #20	ENSLACG00000017340	EFCAB2 (ENSLACG00000022572) #21	HNRNPU (ENSLACG00000017463) #22	QPCT (ENSLACG00000017534)
Actinopterygii	ANCESTRAL SPECIES	263		ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT01030000235230	ENSGT00980000199001	ENSGT00950000183142.a.b.a.b #18	ENSGT00910000148060	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000017953.B
Reedfish	MODERN SPECIES	11	myt1la (ENSECRG00000010398)	PXDN (ENSECRG00000010492)	ankef1a (ENSECRG00000010510)	snap25b (ENSECRG00000010516)	AHCTF1 (ENSECRG00000010527) #15	ENSECRG00000010555	sccpdha.1 (ENSECRG00000010567) #16	ENSECRG00000010583	ENSECRG00000000663	tfb2m (ENSECRG00000000681) #18	ENSECRG00000000702	ENSECRG00000000712 #19	KIF26B (ENSECRG00000000736) #20	EFCAB2 (ENSECRG00000000751) #21	ENSECRG00000000777	hnrnpub (ENSECRG00000000799) #22	ENSECRG00000000851	KIF3C (ENSECRG00000000883)	ASXL2 (ENSECRG00000000924)	dtnbb (ENSECRG00000001090)	ENSECRG00000001324	dnmt3aa (ENSECRG00000001371)	slc30a10 (ENSECRG00000001502)	ENSECRG00000001582	slc30a10 (ENSECRG00000001638)	plaat1l (ENSECRG00000001703)	nme6 (ENSECRG00000001718)	unc93a (ENSECRG00000001736)	ttll2 (ENSECRG00000001754)	ENSECRG00000001781	plg (ENSECRG00000001836)
Neopterygii	ANCESTRAL SPECIES	138	ENSGT01030000234633.A	ENSGT00390000007458	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861 #17	ENSGT01030000235230	ENSGT00980000199001	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992 #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546 #22	ENSGT00390000017953.B
Spotted gar	MODERN SPECIES	647	ATAD2B (ENSLOCG00000016615)	UBXN2A (ENSLOCG00000016618)	mfsd2b (ENSLOCG00000016620)	wdcp (ENSLOCG00000016622)	fkbp1b (ENSLOCG00000016624)	mmut (ENSLOCG00000016626)	ENSLOCG00000016633	AHCTF1 (ENSLOCG00000016634) #15	ENSLOCG00000016637	sccpdha.1 (ENSLOCG00000016642) #16	CNST (ENSLOCG00000016645) #17	tfb2m (ENSLOCG00000016646) #18	smyd3 (ENSLOCG00000016648) #19	KIF26B (ENSLOCG00000016650) #20	efcab2 (ENSLOCG00000016651)	hnrnpub (ENSLOCG00000016652) #22	ENSLOCG00000016655	hpcal1 (ENSLOCG00000016657)	odc1 (ENSLOCG00000016658)	nol10 (ENSLOCG00000016660)	ATP6V1C2 (ENSLOCG00000016662)	pdia6 (ENSLOCG00000016663)	kcnf1a (ENSLOCG00000018004)	ENSLOCG00000018005	si:dkey-18j18.3 (ENSLOCG00000016665)	ENSLOCG00000018006	rock2b (ENSLOCG00000016666)	ENSLOCG00000016669	lpin1a (ENSLOCG00000016673)	ENSLOCG00000016676	dnajc27 (ENSLOCG00000016679)
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	137	ENSGT01030000235144	ENSGT00940000156618.c.b	ENSGT01030000234597.a.b.a.a	ENSGT00950000183172.C	ENSGT01030000234633.A.a.a	ENSGT00390000007458	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00940000176994	ENSGT00940000178689	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT01030000235230	ENSGT00980000199001	ENSGT00390000005861.b #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992.f #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B	ENSGT00390000010056.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021
Clupeocephala	ANCESTRAL SPECIES	1	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000161541	ENSGT00940000154603.B	ENSGT00940000161228
Otomorpha	ANCESTRAL SPECIES	64	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b.k	ENSGT00940000156491.a.d	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B	ENSGT00940000161228	ENSGT00940000156212
Clupeiformes	ANCESTRAL SPECIES	274											ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b.k	ENSGT00940000156491.a.d	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.h	ENSGT00940000159745	ENSGT01030000234625.B.d.c.b
Denticle herring	MODERN SPECIES	5	slc30a1a (ENSDCDG00000033045)	ENSDCDG00000033046	rd3 (ENSDCDG00000033048)	si:ch211-22i13.2 (ENSDCDG00000033049)	rhag (ENSDCDG00000033067)	ENSDCDG00000033140	nrbp1 (ENSDCDG00000033160)	ENSDCDG00000033322	churc1 (ENSDCDG00000033609)	ttbk2b (ENSDCDG00000033610)	mideasa (ENSDCDG00000033613)	kcns3b (ENSDCDG00000033614)	ENSDCDG00000033620	ttc32 (ENSDCDG00000033629)	ENSDCDG00000033636 #20	hnrnpub (ENSDCDG00000033646) #22	lft1 (ENSDCDG00000033672)	cdc42bpab (ENSDCDG00000034016)	ENSDCDG00000035499	fzd3a (ENSDCDG00000035500)	fbxo16 (ENSDCDG00000035504)	fam49a (ENSDCDG00000035510)	ENSDCDG00000035520	ENSDCDG00000035521	vsnl1a (ENSDCDG00000035525)	sf3b6 (ENSDCDG00000035526)	tdrd6 (ENSDCDG00000035528)	pla2g7 (ENSDCDG00000035533)	ENSDCDG00000035535	ENSDCDG00000035538	ENSDCDG00000035544
Atlantic herring	MODERN SPECIES	6	kcnk3a (ENSCHAG00000023836)	slc35f6 (ENSCHAG00000023842)	ENSCHAG00000023959	e2f6 (ENSCHAG00000026214)	mboat2b (ENSCHAG00000026224)	GPX1 (ENSCHAG00000026244)	mcm3 (ENSCHAG00000026249)	ENSCHAG00000026259	stmn4 (ENSCHAG00000026263)	emilin1a (ENSCHAG00000026270)	ankef1a (ENSCHAG00000026273)	SNAP25 (ENSCHAG00000026280)	sccpdhb (ENSCHAG00000026292) #16	cnstb (ENSCHAG00000026297) #17	ENSCHAG00000026300 #20	hnrnpub (ENSCHAG00000026311) #22	lft1 (ENSCHAG00000026327)	cdc42bpab (ENSCHAG00000026335)	fzd3a (ENSCHAG00000026363)	fbxo16 (ENSCHAG00000026367)	fam49a (ENSCHAG00000026381)	ENSCHAG00000026402	VSNL1 (ENSCHAG00000002389)	sf3b6 (ENSCHAG00000002532)	tdrd6 (ENSCHAG00000002651)	pla2g7 (ENSCHAG00000002750)	mep1a.1 (ENSCHAG00000003734)	mep1a.2 (ENSCHAG00000003989)	ENSCHAG00000004128	ENSCHAG00000004193	ENSCHAG00000004233
Otophysi	ANCESTRAL SPECIES	7	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000180531	ENSGT00940000154746.a.b	ENSGT00940000159075.B	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b.k	ENSGT00940000156491.a.d	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00730000113053	ENSGT00940000154603.B	ENSGT00940000161228
Characiphysae	ANCESTRAL SPECIES	4	ENSGT00390000011890	ENSGT00940000157624.a	ENSGT00940000153635.B	ENSGT00940000167340	ENSGT00900000141110	ENSGT00390000003855.b.e.b	ENSGT00940000167177	ENSGT00950000183147.A.a.g.b	ENSGT00390000007874	ENSGT00940000173579	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000180531	ENSGT00940000154746.a.b	ENSGT00940000159075.B	ENSGT00940000156546.`b.a #22	ENSGT00940000163655.b	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.d.a
Channel catfish	MODERN SPECIES	17	ENSIPUG00000008267	slc25a24 (ENSIPUG00000008225)	elp3 (ENSIPUG00000008133)	PDIK1L (ENSIPUG00000008116)	pnoc (ENSIPUG00000008105)	znf395 (ENSIPUG00000008084)	paqr8 (ENSIPUG00000008073)	MCM3 (ENSIPUG00000007956)	Il17f (ENSIPUG00000007931)	Stmn4 (ENSIPUG00000007910)	emilin1a (ENSIPUG00000007899)	ankef1a (ENSIPUG00000007880)	snap25 (ENSIPUG00000007864)	cnstb (ENSIPUG00000007828) #17	ENSIPUG00000007794	hnrnpu (ENSIPUG00000007749) #22	lft1 (ENSIPUG00000007713)	cdc42bpab (ENSIPUG00000007633)	FZD3 (ENSIPUG00000007603)	fbxo16 (ENSIPUG00000007590)	fam49a (ENSIPUG00000007421)	vsnl1a (ENSIPUG00000007389)	TMEM30A (ENSIPUG00000007370)	COX7A2 (ENSIPUG00000007356)	ENSIPUG00000006882	cd109 (ENSIPUG00000006809)	naa20 (ENSIPUG00000006781)	crnkl1 (ENSIPUG00000006751)	cfap61 (ENSIPUG00000006707)	insm1a (ENSIPUG00000006693)	ENSIPUG00000006689
Characiphysae_b	ANCESTRAL SPECIES	13	ENSGT00390000011890	ENSGT00940000157624.a	ENSGT00940000153635.B	ENSGT00940000167340	ENSGT00900000141110	ENSGT00390000003855.b.e.b	ENSGT00940000167177	ENSGT00950000183147.A.a.g.b	ENSGT00390000007874	ENSGT00940000173579	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000180531	ENSGT00940000154746.a.b	ENSGT00940000159075.B	ENSGT00940000156546.`b.a #22	ENSGT00940000163655.b	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.d.a
Electric eel	MODERN SPECIES	250	prrx1b (ENSEEEG00000005218)	ENSEEEG00000005222	slc25a24 (ENSEEEG00000005231)	elp3 (ENSEEEG00000005247)	si:ch211-63o20.7 (ENSEEEG00000005417)	pnocb (ENSEEEG00000005418)	znf395b (ENSEEEG00000005419)	paqr8 (ENSEEEG00000005421)	mcm3 (ENSEEEG00000005426)	il17a/f3 (ENSEEEG00000005440)	stmn4 (ENSEEEG00000005443)	emilin1a (ENSEEEG00000005444)	ankef1a (ENSEEEG00000005449)	snap25a (ENSEEEG00000005459)	ENSEEEG00000005526	hnrnpub (ENSEEEG00000005540) #22	lft1 (ENSEEEG00000005622)	cdc42bpab (ENSEEEG00000005658)	ENSEEEG00000006157	fzd3a (ENSEEEG00000006159)	fbxo16 (ENSEEEG00000006160)	fam49a (ENSEEEG00000006173)	vsnl1a (ENSEEEG00000006572)	sf3b6 (ENSEEEG00000006573)	tdrd6 (ENSEEEG00000006575)	pla2g7 (ENSEEEG00000006576)	mep1a.1 (ENSEEEG00000006577)	mep1a.2 (ENSEEEG00000006578)	ENSEEEG00000006579
Characoidei	ANCESTRAL SPECIES	148																ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b.k	ENSGT00940000156491.a.d	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000161228.a.d	ENSGT00940000164218.pb	ENSGT00940000161228.a.c
Red-bellied piranha	MODERN SPECIES	380																hnrnpub (ENSPNAG00000001055) #22	lft1 (ENSPNAG00000008516)	cdc42bpab (ENSPNAG00000008750)	fzd3a (ENSPNAG00000001200)	fbxo16 (ENSPNAG00000008805)	fam49a (ENSPNAG00000001208)	vsnl1a (ENSPNAG00000005235)	sf3b6 (ENSPNAG00000008845)	tdrd6 (ENSPNAG00000008860)	pla2g7 (ENSPNAG00000008870)	mep1a.1 (ENSPNAG00000008891)	ENSPNAG00000001238	mep1a.2 (ENSPNAG00000001269)	ENSPNAG00000009012	ENSPNAG00000009050	ENSPNAG00000001295
Cyprinoidei	ANCESTRAL SPECIES	8	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000163104	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000157501.h	ENSGT00940000159887.e	ENSGT00940000180531	ENSGT00940000154746.a.b	ENSGT00940000159075.B	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b.k	ENSGT00940000156491.a.d	ENSGT00940000159021	ENSGT00390000015159.a.b.c	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00940000161541	ENSGT00940000161228.c.a.b	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000161228.c.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	58	ENSGT00940000159466.d.c.a	ENSGT00950000183190.a.a.b.c.b.a.a	ENSGT00940000164927.a.a	ENSGT00390000013141.a	ENSGT00940000166937.b	ENSGT00950000183149.C.b.c	ENSGT00940000157136.b.b	ENSGT00940000159860.e.b	ENSGT01050000244824.B.db.b	ENSGT00940000156618.c.a.a	ENSGT01030000234597.a.b.a.b.e	ENSGT01030000234633.A.a.b.a	ENSGT00940000156852.d.b	ENSGT00390000005861.a.a #17	ENSGT00940000159075.B.j.b	ENSGT00940000156546.`b.a.a #22	ENSGT00390000010056.b.c	ENSGT01030000234517.H.b.k.b	ENSGT00940000156491.a.d.a.a	ENSGT00940000159021.a	ENSGT00390000015159.a.b.c.a	ENSGT00940000156513.a.b.b.a.a	ENSGT00390000005908.b.b	ENSGT00940000159049.a.a	ENSGT00390000005233.b.c	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000161541	ENSGT00940000161228.c.a.b.b	ENSGT00950000183158.D.b.f.qb	ENSGT00950000183158.B.b
Cyprininae_a	ANCESTRAL SPECIES	257	ENSGT00950000183190.a.a.b.c.b.a.b	ENSGT00950000183190.a.a.b.c.b.b	ENSGT00950000183190.a.a.b.c.b.a.a	ENSGT00940000164927.a.a	ENSGT00390000013141.a	ENSGT00940000166937.b	ENSGT00950000183149.C.b.c	ENSGT00940000157136.b.b	ENSGT01050000244824.B.db.b	ENSGT00940000156618.c.a.a	ENSGT01030000234597.a.b.a.b.e	ENSGT01030000234633.A.a.b.a	ENSGT00940000156852.d.b	ENSGT00390000005861.a.a #17	ENSGT00940000159075.B.j.b	ENSGT00940000156546.`b.a.a #22	ENSGT00390000010056.b.c	ENSGT01030000234517.H.b.k.b	ENSGT00940000156491.a.d.a.a	ENSGT00940000159021.a	ENSGT00390000015159.a.b.c.a
Common carp reference	MODERN SPECIES	28	ENSCCRG00000069171	ENSCCRG00000070865	slc25a24 (ENSCCRG00000062518)	elp3 (ENSCCRG00000007703)	si:ch211-63o20.7 (ENSCCRG00000066954)	znf395b (ENSCCRG00000007688)	mcm3 (ENSCCRG00000020414)	il17a/f3 (ENSCCRG00000078734)	stmn4 (ENSCCRG00000068496)	emilin1a (ENSCCRG00000056865)	ankef1a (ENSCCRG00000032559)	snap25a (ENSCCRG00000034090)	sccpdhb (ENSCCRG00000009379) #16	cnstb (ENSCCRG00000078235) #17	ENSCCRG00000009391	hnrnpub (ENSCCRG00000009415) #22	lft1 (ENSCCRG00000023109)	cdc42bpab (ENSCCRG00000010550)	fzd3a (ENSCCRG00000011341)	fbxo16 (ENSCCRG00000050979)	ENSCCRG00000050960	ENSCCRG00000022773	ENSCCRG00000073435	tdrd6 (ENSCCRG00000068253)	pla2g7 (ENSCCRG00000022724)	mep1a.1 (ENSCCRG00000031371)	mep1a.2 (ENSCCRG00000031366)	ENSCCRG00000031365	ENSCCRG00000008903	ENSCCRG00000078758	ENSCCRG00000044474
Golden-line barbel	MODERN SPECIES	259	ENSSGRG00000036130	slc25a24 (ENSSGRG00000036074)	elp3 (ENSSGRG00000035922)	si:ch211-63o20.7 (ENSSGRG00000035921)	pnocb (ENSSGRG00000035920)	znf395b (ENSSGRG00000035919)	mcm3 (ENSSGRG00000034715)	il17a/f3 (ENSSGRG00000034707)	stmn4 (ENSSGRG00000034706)	emilin1a (ENSSGRG00000034705)	ENSSGRG00000034703	snap25a (ENSSGRG00000034697)	cnstb (ENSSGRG00000034696) #17	sccpdhb (ENSSGRG00000034695) #16	cnstb (ENSSGRG00000034694) #17	hnrnpub (ENSSGRG00000034693) #22	lft1 (ENSSGRG00000034692)	cdc42bpab (ENSSGRG00000033401)	fzd3a (ENSSGRG00000033390)	fbxo16 (ENSSGRG00000033389)	fam49a (ENSSGRG00000033378)	ENSSGRG00000033377	ENSSGRG00000033376	irf6 (ENSSGRG00000033374)	ENSSGRG00000033373	AMPD2 (ENSSGRG00000033371)	ENSSGRG00000033370	aqp12 (ENSSGRG00000033369)	pak2b (ENSSGRG00000033029)
Goldfish	MODERN SPECIES	39	zbtb1 (ENSCARG00000054687)	ENSCARG00000054529	ENSCARG00000054477	P2RY1 (ENSCARG00000054471)	rap2b (ENSCARG00000054464)	ENSCARG00000054359	CTTN (ENSCARG00000062656)	ENSCARG00000062639	ST7 (ENSCARG00000057129)	ENSCARG00000056998	ppfia1 (ENSCARG00000050096)	emilin1a (ENSCARG00000049857)	snap25a (ENSCARG00000049820)	cnstb (ENSCARG00000049812) #17	ENSCARG00000049799	hnrnpub (ENSCARG00000049625) #22	lft1 (ENSCARG00000049599)	cdc42bpab (ENSCARG00000034083)	slc5a6a (ENSCARG00000033370)	rpl7l1 (ENSCARG00000033274)	NCOA1 (ENSCARG00000033214)	slc25a27 (ENSCARG00000033128)	ENSCARG00000033118	heca (ENSCARG00000033106)	ENSCARG00000033098	e2f6 (ENSCARG00000033078)	asap2b (ENSCARG00000031807)	cpsf3 (ENSCARG00000031673)	ENSCARG00000031235	ywhaqa (ENSCARG00000031208)	lft1 (ENSCARG00000031196)
Cyprininae	ANCESTRAL SPECIES	339	ENSGT00940000164927.a.b	ENSGT00390000013141.b	ENSGT00940000166937.a	ENSGT00950000183149.C.b.d	ENSGT00940000157136.b.a	ENSGT00940000159860.e.a	ENSGT01050000244824.B.db.a	ENSGT00940000156618.c.a.b	ENSGT01030000234597.a.b.a.b.f	ENSGT01030000234633.A.a.b.b	ENSGT00940000156852.d.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799.n #16	ENSGT00390000005861.a.b #17	ENSGT00940000159075.B.j.a	ENSGT00940000156546.`b.a.b #22	ENSGT00390000010056.b.d	ENSGT01030000234517.H.b.k.a	ENSGT00940000156491.a.d.a.b	ENSGT00940000159021.b	ENSGT00390000015159.a.b.c.b.a.a	ENSGT00940000156513.a.b.a	ENSGT00390000005908.b.a	ENSGT00940000159049.a.b	ENSGT00390000005233.b.d	ENSGT00940000154603.A.f.b	ENSGT00940000161228.c.b.a	ENSGT00940000156212.m.a	ENSGT00940000157566.p	ENSGT01100000263524.B.a.b.b	ENSGT00940000156827.cc.a.a.b
Cyprininae_a	ANCESTRAL SPECIES	323	ENSGT00940000164927.a.b	ENSGT00390000013141.b	ENSGT00940000166937.a	ENSGT00950000183149.C.b.d	ENSGT00940000157136.b.a	ENSGT00940000159860.e.a	ENSGT01050000244824.B.db.a	ENSGT00940000156618.c.a.b	ENSGT01030000234597.a.b.a.b.f	ENSGT01030000234633.A.a.b.b	ENSGT00940000156852.d.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799.n #16	ENSGT00390000005861.a.b #17	ENSGT00940000159075.B.j.a	ENSGT00940000156546.`b.a.b #22	ENSGT00390000010056.b.d	ENSGT01030000234517.H.b.k.a	ENSGT00940000156491.a.d.a.b	ENSGT00940000159021.b	ENSGT00390000015159.a.b.c.b.a.a	ENSGT00940000156513.a.b.b.b	ENSGT00390000005908.a	ENSGT00940000159049.a.b	ENSGT00390000005233.b.d	ENSGT00940000154603.A.f.b	ENSGT00940000161228.c.b.a	ENSGT00940000156212.m.a	ENSGT00940000157566.p	ENSGT01100000263524.B.a.b.b	ENSGT00940000156827.cc.a.a.b
Golden-line barbel	MODERN SPECIES	472	slc25a24 (ENSSGRG00000042056)	elp3 (ENSSGRG00000041972)	si:ch211-63o20.7 (ENSSGRG00000041959)	pnocb (ENSSGRG00000041957)	znf395b (ENSSGRG00000041956)	paqr8 (ENSSGRG00000041955)	mcm3 (ENSSGRG00000041541)	il17a/f3 (ENSSGRG00000041534)	stmn4 (ENSSGRG00000041532)	emilin1a (ENSSGRG00000041528)	ankef1a (ENSSGRG00000041525)	SNAP25 (ENSSGRG00000041520)	sccpdhb (ENSSGRG00000041516) #16	cnstb (ENSSGRG00000041514) #17	ENSSGRG00000041512	hnrnpub (ENSSGRG00000041491) #22	lft1 (ENSSGRG00000041489)	cdc42bpab (ENSSGRG00000034778)	fzd3a (ENSSGRG00000034722)	fbxo16 (ENSSGRG00000034720)	fam49a (ENSSGRG00000034659)	vsnl1a (ENSSGRG00000034656)	tdrd6 (ENSSGRG00000034655)	pla2g7 (ENSSGRG00000034654)	ENSSGRG00000034653	ENSSGRG00000034651	tnfrsf21 (ENSSGRG00000034650)	cd2ap (ENSSGRG00000034648)	opn5 (ENSSGRG00000034647)	ptchd4 (ENSSGRG00000034646)	ENSSGRG00000034645
Common carp reference	MODERN SPECIES	34	slc25a24 (ENSCCRG00000047317)	elp3 (ENSCCRG00000047319)	si:ch211-63o20.7 (ENSCCRG00000054786)	pnocb (ENSCCRG00000059629)	znf395b (ENSCCRG00000005473)	paqr8 (ENSCCRG00000072910)	mcm3 (ENSCCRG00000005245)	il17a/f3 (ENSCCRG00000067104)	stmn4 (ENSCCRG00000074692)	emilin1a (ENSCCRG00000075193)	ankef1a (ENSCCRG00000034142)	ENSCCRG00000057731	sccpdhb (ENSCCRG00000003293) #16	cnstb (ENSCCRG00000061873) #17	ENSCCRG00000023045	hnrnpub (ENSCCRG00000023049) #22	lft1 (ENSCCRG00000010540)	cdc42bpab (ENSCCRG00000033766)	fzd3a (ENSCCRG00000050984)	fbxo16 (ENSCCRG00000011349)	fam49a (ENSCCRG00000050994)	vsnl1a (ENSCCRG00000059197)	sf3b6 (ENSCCRG00000054842)	tdrd6 (ENSCCRG00000022759)	pla2g7 (ENSCCRG00000015127)	ENSCCRG00000014053	ENSCCRG00000014027	ENSCCRG00000062316	ENSCCRG00000081206	ENSCCRG00000061979	ENSCCRG00000009075
Goldfish	MODERN SPECIES	12	slc25a24 (ENSCARG00000005688)	elp3 (ENSCARG00000005669)	si:ch211-63o20.7 (ENSCARG00000005660)	pnocb (ENSCARG00000005656)	znf395b (ENSCARG00000005649)	paqr8 (ENSCARG00000005646)	mcm3 (ENSCARG00000005596)	il17a/f3 (ENSCARG00000005581)	stmn4 (ENSCARG00000005572)	emilin1a (ENSCARG00000005563)	ankef1a (ENSCARG00000005555)	snap25a (ENSCARG00000005536)	sccpdhb (ENSCARG00000005286) #16	cnstb (ENSCARG00000005271) #17	ENSCARG00000005266	hnrnpub (ENSCARG00000004898) #22	lft1 (ENSCARG00000004860)	cdc42bpab (ENSCARG00000003756)	fzd3a (ENSCARG00000003670)	ENSCARG00000003651	fam49a (ENSCARG00000035535)	vsnl1a (ENSCARG00000035506)	sf3b6 (ENSCARG00000035496)	tdrd6 (ENSCARG00000035483)	pla2g7 (ENSCARG00000035163)	ENSCARG00000035149	ENSCARG00000035138	ENSCARG00000035127	ENSCARG00000035097	tnfrsf21 (ENSCARG00000035080)	lratd1 (ENSCARG00000035073)
Zebrafish	MODERN SPECIES	12	slc25a24 (ENSDARG00000008568)	elp3 (ENSDARG00000042005)	si:ch211-63o20.7 (ENSDARG00000042000)	pnocb (ENSDARG00000024189)	znf395b (ENSDARG00000024195)	paqr8 (ENSDARG00000088828)	mcm3 (ENSDARG00000024204)	stmn4 (ENSDARG00000030106)	il17a/f3 (ENSDARG00000041976)	emilin1a (ENSDARG00000024537)	ankef1a (ENSDARG00000019135)	snap25a (ENSDARG00000020609)	sccpdhb (ENSDARG00000024564) #16	cnstb (ENSDARG00000042759) #17	ENSDARG00000024575	hnrnpub (ENSDARG00000004735) #22	lft1 (ENSDARG00000019920)	cdc42bpab (ENSDARG00000016464)	fbxo16 (ENSDARG00000033949)	fzd3a (ENSDARG00000021664)	fam49a (ENSDARG00000006672)	vsnl1a (ENSDARG00000023228)	sf3b6 (ENSDARG00000009753)	tdrd6 (ENSDARG00000070052)	pla2g7 (ENSDARG00000003584)	mep1a.1 (ENSDARG00000029747)	mep1a.2 (ENSDARG00000008029)	ENSDARG00000093008	ENSDARG00000075134	ENSDARG00000086445	ADGRF1 (ENSDARG00000091757)
Euteleosteomorpha	ANCESTRAL SPECIES	87	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00940000159056.g	ENSGT00940000160877	ENSGT00940000158937.b	ENSGT00390000016736.a.j
Acanthomorphata	ANCESTRAL SPECIES	35	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT00950000183111.b.a.b	ENSGT00390000000568	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000156852.c.f	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000180472	ENSGT00940000159462.b	ENSGT00940000159056.g
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000180472	ENSGT00940000159462.b	ENSGT00940000159056.g
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000180472	ENSGT00940000159462.b	ENSGT00940000159056.g
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Aplocheiloidei	ANCESTRAL SPECIES	34													ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000160877.g.a
Mangrove rivulus	MODERN SPECIES	12													snap25a (ENSKMAG00000004613)	cnstb (ENSKMAG00000004586) #17	ENSKMAG00000004551 #20	hnrnpub (ENSKMAG00000004532) #22	lft1 (ENSKMAG00000004477)	cdc42bpab (ENSKMAG00000004203)	fzd3a (ENSKMAG00000004123)	fbxo16 (ENSKMAG00000004106)	fam49a (ENSKMAG00000004030)	VSNL1 (ENSKMAG00000004010)	sf3b6 (ENSKMAG00000004000)	ENSKMAG00000003969	pla2g7 (ENSKMAG00000003957)	ints9 (ENSKMAG00000003883)	glrx5 (ENSKMAG00000003866)	prkrip1 (ENSKMAG00000003842)	ENSKMAG00000003829	ENSKMAG00000003812	SERPINA4 (ENSKMAG00000003801)
Turquoise killifish	MODERN SPECIES	1613										ENSNFUG00015012673	ENSNFUG00015012671	EMILIN1A (ENSNFUG00015012650)	SNAP25 (ENSNFUG00015012613)	ENSNFUG00015012601	ENSNFUG00015012587 #20	HNRNPUA (ENSNFUG00015012457) #22	ENSNFUG00015012421	LFT1 (ENSNFUG00015012414)	ENSNFUG00015012410	ENSNFUG00015012409	ENSNFUG00015012404	ENSNFUG00015012398	ENSNFUG00015012397	ENSNFUG00015012390	fam49a (ENSNFUG00015012353)	znf395b (ENSNFUG00015012332)	PNOCB (ENSNFUG00015012328)	ENSNFUG00015012325	si:ch211-63o20.7 (ENSNFUG00015012319)	elp3 (ENSNFUG00015011836)	KIF13B (ENSNFUG00015010336)
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000174799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000174799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000180472	ENSGT01040000244242	ENSGT00940000159056.g
Poecilia	ANCESTRAL SPECIES	9	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000180472	ENSGT01040000244242	ENSGT00940000159056.g
Guppy	DUPLICATION
Guppy	MODERN SPECIES	452	KIF13B (ENSPREG00000019518)	elp3 (ENSPREG00000019454)	si:ch211-63o20.7 (ENSPREG00000019424)	pnocb (ENSPREG00000019418)	znf395b (ENSPREG00000019411)	paqr8 (ENSPREG00000019405)	mcm3 (ENSPREG00000019355)	ENSPREG00000019327	stmn4 (ENSPREG00000019308)	emilin1a (ENSPREG00000019292)	ankef1a (ENSPREG00000019273)	snap25a (ENSPREG00000019226)	cnstb (ENSPREG00000019179) #17	ENSPREG00000019145 #20	ENSPREG00000019131 #22	ENSPREG00000019117 #22	lft1 (ENSPREG00000019085)	cdc42bpab (ENSPREG00000019012)	fzd3a (ENSPREG00000018969)	fbxo16 (ENSPREG00000018940)	fam49a (ENSPREG00000018894)	vsnl1a (ENSPREG00000018875)	ENSPREG00000018863	sf3b6 (ENSPREG00000018852)	tdrd6 (ENSPREG00000018829)	pla2g7 (ENSPREG00000018803)	ints9 (ENSPREG00000018730)	glrx5 (ENSPREG00000018701)	prkrip1 (ENSPREG00000018690)	ENSPREG00000018661	serpina1l (ENSPREG00000018644)
Guppy	MODERN SPECIES	452	HMBOX1 (ENSPREG00000019608)	KIF13B (ENSPREG00000019518)	elp3 (ENSPREG00000019454)	si:ch211-63o20.7 (ENSPREG00000019424)	pnocb (ENSPREG00000019418)	znf395b (ENSPREG00000019411)	paqr8 (ENSPREG00000019405)	mcm3 (ENSPREG00000019355)	ENSPREG00000019327	stmn4 (ENSPREG00000019308)	emilin1a (ENSPREG00000019292)	ankef1a (ENSPREG00000019273)	snap25a (ENSPREG00000019226)	cnstb (ENSPREG00000019179) #17	ENSPREG00000019145 #20	ENSPREG00000019131 #22	ENSPREG00000019117 #22	lft1 (ENSPREG00000019085)	cdc42bpab (ENSPREG00000019012)	fzd3a (ENSPREG00000018969)	fbxo16 (ENSPREG00000018940)	fam49a (ENSPREG00000018894)	vsnl1a (ENSPREG00000018875)	ENSPREG00000018863	sf3b6 (ENSPREG00000018852)	tdrd6 (ENSPREG00000018829)	pla2g7 (ENSPREG00000018803)	ints9 (ENSPREG00000018730)	glrx5 (ENSPREG00000018701)	prkrip1 (ENSPREG00000018690)	ENSPREG00000018661
NAME_6	ANCESTRAL SPECIES	85	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000180472	ENSGT01040000244242	ENSGT00940000159056.g
Amazon molly	MODERN SPECIES	463	HMBOX1 (ENSPFOG00000000843)	KIF13B (ENSPFOG00000001119)	elp3 (ENSPFOG00000001657)	si:ch211-63o20.7 (ENSPFOG00000001871)	pnocb (ENSPFOG00000001912)	znf395b (ENSPFOG00000001931)	paqr8 (ENSPFOG00000020530)	mcm3 (ENSPFOG00000002039)	il17a/f3 (ENSPFOG00000024626)	stmn4 (ENSPFOG00000002375)	emilin1a (ENSPFOG00000002432)	ankef1a (ENSPFOG00000002517)	snap25a (ENSPFOG00000002657)	cnstb (ENSPFOG00000002789) #17	ENSPFOG00000002809 #20	hnrnpub (ENSPFOG00000002908) #22	lft1 (ENSPFOG00000003010)	cdc42bpab (ENSPFOG00000003122)	fzd3a (ENSPFOG00000004133)	fbxo16 (ENSPFOG00000004233)	fam49a (ENSPFOG00000004341)
Sailfin molly	MODERN SPECIES	440									stmn4 (ENSPLAG00000004324)	emilin1a (ENSPLAG00000004313)	ENSPLAG00000004303	ankef1a (ENSPLAG00000004292)	snap25a (ENSPLAG00000004225)	ENSPLAG00000004210	ENSPLAG00000004197 #20	hnrnpub (ENSPLAG00000004160) #22	lft1 (ENSPLAG00000004151)	ENSPLAG00000004090
Platyfish	MODERN SPECIES	6	KIF13B (ENSXMAG00000001804)	elp3 (ENSXMAG00000001825)	si:ch211-63o20.7 (ENSXMAG00000025014)	pnocb (ENSXMAG00000007809)	znf395b (ENSXMAG00000007800)	paqr8 (ENSXMAG00000019722)	mcm3 (ENSXMAG00000007764)	ENSXMAG00000024073	stmn4 (ENSXMAG00000007755)	emilin1a (ENSXMAG00000007750)	ankef1a (ENSXMAG00000007741)	ENSXMAG00000028320	snap25a (ENSXMAG00000007734)	cnstb (ENSXMAG00000028462) #17	ENSXMAG00000010348 #20	hnrnpub (ENSXMAG00000010356) #22	lft1 (ENSXMAG00000014683)	cdc42bpab (ENSXMAG00000010796)	fzd3a (ENSXMAG00000010779)	fbxo16 (ENSXMAG00000010768)	fam49a (ENSXMAG00000010759)	vsnl1a (ENSXMAG00000010752)	sf3b6 (ENSXMAG00000010747)	tdrd6 (ENSXMAG00000025787)	pla2g7 (ENSXMAG00000010731)	ints9 (ENSXMAG00000010715)	glrx5 (ENSXMAG00000025645)	prkrip1 (ENSXMAG00000019896)	ENSXMAG00000010707	serpina1l (ENSXMAG00000010698)	flrt2 (ENSXMAG00000019679)
NAME_4	ANCESTRAL SPECIES	167	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000174799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Sheepshead minnow	MODERN SPECIES	673								mcm3 (ENSCVAG00000003962)	il17a/f3 (ENSCVAG00000003976)	stmn4 (ENSCVAG00000003980)	emilin1a (ENSCVAG00000003993)	ankef1a (ENSCVAG00000004008)	snap25a (ENSCVAG00000004040)	cnstb (ENSCVAG00000004051) #17	ENSCVAG00000004063	hnrnpub (ENSCVAG00000004280) #22	lft1 (ENSCVAG00000004301)	cdc42bpab (ENSCVAG00000004580)	fzd3a (ENSCVAG00000004608)	fbxo16 (ENSCVAG00000004708)	fam49a (ENSCVAG00000004748)
Mummichog	MODERN SPECIES	2396										emilin1a (ENSFHEG00000022428)	ankef1a (ENSFHEG00000022436)	ENSFHEG00000022455	snap25a (ENSFHEG00000022492)	cnstb (ENSFHEG00000022509) #17	ENSFHEG00000022632 #20	hnrnpub (ENSFHEG00000022639) #22	lft1 (ENSFHEG00000022654)	cdc42bpab (ENSFHEG00000000836)	fzd3a (ENSFHEG00000022807)	fbxo16 (ENSFHEG00000022818)	fam49a (ENSFHEG00000022849)	VSNL1 (ENSFHEG00000022867)	sf3b6 (ENSFHEG00000000685)	tdrd6 (ENSFHEG00000022915)	pla2g7 (ENSFHEG00000022930)	ints9 (ENSFHEG00000022949)	glrx5 (ENSFHEG00000022962)	prkrip1 (ENSFHEG00000022975)	clmnb (ENSFHEG00000023021)	ENSFHEG00000023036	serpina1l (ENSFHEG00000023056)
Oryzias	ANCESTRAL SPECIES	19	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000160877.g.a	ENSGT00940000158937.b
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000160877.g.a	ENSGT00940000158937.b	ENSGT00390000016736.a.j
Javanese ricefish	MODERN SPECIES	16	ENSOJAG00000016247	ENSOJAG00000016197	elp3 (ENSOJAG00000016009)	si:ch211-63o20.7 (ENSOJAG00000016004)	pnocb (ENSOJAG00000015999)	znf395b (ENSOJAG00000015995)	paqr8 (ENSOJAG00000015988)	mcm3 (ENSOJAG00000015618)	il17a/f3 (ENSOJAG00000015606)	stmn4 (ENSOJAG00000015593)	emilin1a (ENSOJAG00000015582)	ankef1a (ENSOJAG00000015571)	snap25a (ENSOJAG00000015504)	cnstb (ENSOJAG00000015449) #17	ENSOJAG00000015382 #20	hnrnpub (ENSOJAG00000015260) #22	lft1 (ENSOJAG00000015234)	cdc42bpab (ENSOJAG00000005241)	fzd3a (ENSOJAG00000004150)	fbxo16 (ENSOJAG00000004130)	fam49a (ENSOJAG00000003754)	vsnl1a (ENSOJAG00000003661)	sf3b6 (ENSOJAG00000003639)	tdrd6 (ENSOJAG00000003614)	pla2g7 (ENSOJAG00000009042)	ints9 (ENSOJAG00000008592)	glrx5 (ENSOJAG00000008555)	prkrip1 (ENSOJAG00000008544)	ENSOJAG00000008531	serpina1l (ENSOJAG00000008525)	ENSOJAG00000008520
Indian medaka	MODERN SPECIES	22	ENSOMEG00000015395	ENSOMEG00000015389	elp3 (ENSOMEG00000015360)	si:ch211-63o20.7 (ENSOMEG00000015299)	pnocb (ENSOMEG00000015283)	znf395b (ENSOMEG00000015274)	paqr8 (ENSOMEG00000015257)	mcm3 (ENSOMEG00000015230)	il17a/f3 (ENSOMEG00000015139)	stmn4 (ENSOMEG00000015119)	emilin1a (ENSOMEG00000015102)	ankef1a (ENSOMEG00000015083)	snap25a (ENSOMEG00000015054)	cnstb (ENSOMEG00000015019) #17	ENSOMEG00000014992 #20	hnrnpub (ENSOMEG00000014951) #22	lft1 (ENSOMEG00000014909)	cdc42bpab (ENSOMEG00000014868)	fzd3a (ENSOMEG00000001038)	fbxo16 (ENSOMEG00000000364)	fam49a (ENSOMEG00000014624)	vsnl1a (ENSOMEG00000014521)	sf3b6 (ENSOMEG00000014506)	tdrd6 (ENSOMEG00000014481)	pla2g7 (ENSOMEG00000014433)	ints9 (ENSOMEG00000014390)	prkrip1 (ENSOMEG00000014339)	glrx5 (ENSOMEG00000014329)	ENSOMEG00000014319	serpina1l (ENSOMEG00000014294)	flrt2 (ENSOMEG00000014286)
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000160877.g.a	ENSGT00940000158937.b
Japanese Medaka HdrR	MODERN SPECIES	16	ENSORLG00000026137	ENSORLG00000025386	elp3 (ENSORLG00000016211)	si:ch211-63o20.7 (ENSORLG00000016204)	pnocb (ENSORLG00000016198)	znf395b (ENSORLG00000016195)	paqr8 (ENSORLG00000016192)	mcm3 (ENSORLG00000016187)	il17a/f3 (ENSORLG00000027446)	stmn4 (ENSORLG00000016161)	emilin1a (ENSORLG00000016152)	ankef1a (ENSORLG00000016142)	snap25a (ENSORLG00000016124)	cnstb (ENSORLG00000026472) #17	ENSORLG00000016117 #20	hnrnpub (ENSORLG00000016114) #22	lft1 (ENSORLG00000016105)	cdc42bpab (ENSORLG00000016081)	fzd3a (ENSORLG00000015986)	fbxo16 (ENSORLG00000015978)	fam49a (ENSORLG00000015966)	ENSORLG00000023053	ENSORLG00000029879	VSNL1 (ENSORLG00000015960)	sf3b6 (ENSORLG00000015955)	amh (ENSORLG00000015951)	pla2g7 (ENSORLG00000015947)	glrx5 (ENSORLG00000025628)	ints9 (ENSORLG00000015930)	ENSORLG00000015895	serpina1l (ENSORLG00000015892)
Chinese medaka	MODERN SPECIES	796	ENSOSIG00000013535	ENSOSIG00000013536	elp3 (ENSOSIG00000013540)	si:ch211-63o20.7 (ENSOSIG00000013548)	pnocb (ENSOSIG00000013551)	znf395b (ENSOSIG00000013555)	mcm3 (ENSOSIG00000013558)	il17a/f3 (ENSOSIG00000013568)	stmn4 (ENSOSIG00000013574)	emilin1a (ENSOSIG00000013585)	ankef1a (ENSOSIG00000013599)	snap25a (ENSOSIG00000013608)	cnstb (ENSOSIG00000013803) #17	ENSOSIG00000013807 #20	ENSOSIG00000013811	hnrnpub (ENSOSIG00000013815) #22	lft1 (ENSOSIG00000013816)	cdc42bpab (ENSOSIG00000013919)	fzd3a (ENSOSIG00000020399)	fbxo16 (ENSOSIG00000020402)	fam49a (ENSOSIG00000020436)	VSNL1 (ENSOSIG00000020565)	sf3b6 (ENSOSIG00000020566)	tdrd6 (ENSOSIG00000020567)	pla2g7 (ENSOSIG00000020570)	glrx5 (ENSOSIG00000020573)	prkrip1 (ENSOSIG00000020574)	clmnb (ENSOSIG00000020578)	serpina1l (ENSOSIG00000020582)	flrt2 (ENSOSIG00000020584)
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000160877.g.a	ENSGT00940000160877.g.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000160877.g.a	ENSGT00940000160877.g.b.d
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000160877.g.a	ENSGT00940000160877.g.b.d
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e.c	ENSGT01050000244824.B	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b.h	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000154856.A.b.g	ENSGT00940000159056.g	ENSGT00940000160877.g.a
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e.c	ENSGT01050000244824.B	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b.g	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000154856.A.b.h	ENSGT00940000159056.g	ENSGT00940000160877.g.a
Haplochromini_B	ANCESTRAL SPECIES	22	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e.c	ENSGT01050000244824.B	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b.g.a.b	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003.c	ENSGT00940000154856.A.b.g.b	ENSGT00940000159056.g	ENSGT00940000160877.g.a
Eastern happy	MODERN SPECIES	6	KIF13B (ENSACLG00000008995)	elp3 (ENSACLG00000008972)	si:ch211-63o20.7 (ENSACLG00000008500)	pnocb (ENSACLG00000008488)	znf395b (ENSACLG00000008468)	ENSACLG00000008462	mcm3 (ENSACLG00000008434)	ENSACLG00000008427	stmn4 (ENSACLG00000008407)	emilin1a (ENSACLG00000008275)	ankef1a (ENSACLG00000008259)	snap25a (ENSACLG00000008238)	ENSACLG00000008209	cnstb (ENSACLG00000008204) #17	ENSACLG00000008195 #20	hnrnpub (ENSACLG00000008165) #22	lft1 (ENSACLG00000008151)	cdc42bpab (ENSACLG00000008108)	fzd3a (ENSACLG00000008090)	fbxo16 (ENSACLG00000008073)	fam49a (ENSACLG00000008056)	vsnl1a (ENSACLG00000007802)	sf3b6 (ENSACLG00000007793)	ENSACLG00000007777	glrx5 (ENSACLG00000007774)	ENSACLG00000007742	prkrip1 (ENSACLG00000007735)	tdrd6 (ENSACLG00000007717)	pla2g7 (ENSACLG00000007662)	ints9 (ENSACLG00000007637)	glrx5 (ENSACLG00000007530)
Zebra mbuna	MODERN SPECIES	1097										emilin1a (ENSMZEG00005002680)	ankef1a (ENSMZEG00005002682)	snap25a (ENSMZEG00005002732)	ENSMZEG00005002760	cnstb (ENSMZEG00005003109) #17	ENSMZEG00005003141 #20	hnrnpub (ENSMZEG00005003185) #22	lft1 (ENSMZEG00005003242)	cdc42bpab (ENSMZEG00005003324)	fzd3a (ENSMZEG00005003453)	fbxo16 (ENSMZEG00005003482)	fam49a (ENSMZEG00005003512)	vsnl1a (ENSMZEG00005003539)	sf3b6 (ENSMZEG00005003557)	tdrd6 (ENSMZEG00005003573)	pla2g7 (ENSMZEG00005003610)	ints9 (ENSMZEG00005003651)	glrx5 (ENSMZEG00005003740)	prkrip1 (ENSMZEG00005003748)	ENSMZEG00005003774	clmnb (ENSMZEG00005006019)	SERPINA4 (ENSMZEG00005006035)
P. nyererei	MODERN SPECIES	308	KIF13B (ENSPNYG00000021149)	elp3 (ENSPNYG00000021199)	si:ch211-63o20.7 (ENSPNYG00000021251)	pnocb (ENSPNYG00000021265)	znf395b (ENSPNYG00000021284)	ENSPNYG00000021315	mcm3 (ENSPNYG00000021333)	ENSPNYG00000021361	stmn4 (ENSPNYG00000021377)	emilin1a (ENSPNYG00000021397)	ankef1a (ENSPNYG00000021429)	snap25a (ENSPNYG00000021470)	ENSPNYG00000021503	cnstb (ENSPNYG00000021537) #17	ENSPNYG00000021572 #20	hnrnpub (ENSPNYG00000021642) #22	lft1 (ENSPNYG00000021680)	cdc42bpab (ENSPNYG00000021718)	fzd3a (ENSPNYG00000021766)	fbxo16 (ENSPNYG00000021787)	fam49a (ENSPNYG00000021805)	vsnl1a (ENSPNYG00000021821)	sf3b6 (ENSPNYG00000021832)	tdrd6 (ENSPNYG00000021847)	pla2g7 (ENSPNYG00000021856)	glrx5 (ENSPNYG00000021865)	ints9 (ENSPNYG00000021900)	prkrip1 (ENSPNYG00000021914)	ENSPNYG00000021937	ENSPNYG00000021943	SERPINA4 (ENSPNYG00000021959)
Burton s mouthbrooder	MODERN SPECIES	286	KIF13B (ENSHBUG00000011324)	elp3 (ENSHBUG00000011383)	si:ch211-63o20.7 (ENSHBUG00000011405)	pnocb (ENSHBUG00000011424)	znf395b (ENSHBUG00000011443)	paqr8 (ENSHBUG00000011665)	mcm3 (ENSHBUG00000011722)	ENSHBUG00000011737	stmn4 (ENSHBUG00000011752)	emilin1a (ENSHBUG00000012025)	ankef1a (ENSHBUG00000012124)	snap25a (ENSHBUG00000012144)	ENSHBUG00000012237	cnstb (ENSHBUG00000012245) #17	ENSHBUG00000012254 #20	hnrnpub (ENSHBUG00000012290) #22	lft1 (ENSHBUG00000000814)	cdc42bpab (ENSHBUG00000000350)	fzd3a (ENSHBUG00000012457)	fbxo16 (ENSHBUG00000012505)	fam49a (ENSHBUG00000012532)	vsnl1a (ENSHBUG00000012542)	sf3b6 (ENSHBUG00000012556)	tdrd6 (ENSHBUG00000012579)	pla2g7 (ENSHBUG00000012629)	ints9 (ENSHBUG00000000821)	glrx5 (ENSHBUG00000012723)	prkrip1 (ENSHBUG00000012745)	ENSHBUG00000012844	ENSHBUG00000012892	SERPINA4 (ENSHBUG00000012898)
Lyretail cichlid	MODERN SPECIES	316				si:ch211-63o20.7 (ENSNBRG00000017284)	pnocb (ENSNBRG00000017299)	znf395b (ENSNBRG00000017316)	paqr8 (ENSNBRG00000017333)	mcm3 (ENSNBRG00000017357)	ENSNBRG00000017430	stmn4 (ENSNBRG00000017485)	emilin1a (ENSNBRG00000017653)	ankef1a (ENSNBRG00000017686)	snap25a (ENSNBRG00000017728)	ENSNBRG00000017762	ENSNBRG00000017796	hnrnpub (ENSNBRG00000017855) #22	lft1 (ENSNBRG00000017915)	cdc42bpab (ENSNBRG00000018000)	ARPC5 (ENSNBRG00000018168)	ENSNBRG00000018181	fbxo16 (ENSNBRG00000018191)	fam49a (ENSNBRG00000018205)	vsnl1a (ENSNBRG00000018237)	sf3b6 (ENSNBRG00000018244)	tdrd6 (ENSNBRG00000018258)	pla2g7 (ENSNBRG00000018273)	ints9 (ENSNBRG00000018303)	prkrip1 (ENSNBRG00000018332)	SERPINA4 (ENSNBRG00000018355)	ENSNBRG00000018360	flrt2 (ENSNBRG00000018372)
Nile tilapia	MODERN SPECIES	6	KIF13B (ENSONIG00000001311)	elp3 (ENSONIG00000001307)	si:ch211-63o20.7 (ENSONIG00000001306)	pnocb (ENSONIG00000040429)	znf395b (ENSONIG00000036384)	paqr8 (ENSONIG00000020922)	mcm3 (ENSONIG00000001295)	ENSONIG00000001294	stmn4 (ENSONIG00000001293)	emilin1a (ENSONIG00000001290)	ankef1a (ENSONIG00000001282)	snap25a (ENSONIG00000001276)	he1.2 (ENSONIG00000037262)	cnstb (ENSONIG00000032036) #17	ENSONIG00000001269 #20	hnrnpub (ENSONIG00000001260) #22	lft1 (ENSONIG00000001253)	cdc42bpab (ENSONIG00000001238)	fzd3a (ENSONIG00000001234)	fbxo16 (ENSONIG00000001230)	fam49a (ENSONIG00000001228)	VSNL1 (ENSONIG00000001225)	sf3b6 (ENSONIG00000040116)	tdrd6 (ENSONIG00000001218)	ENSONIG00000027917	pla2g7 (ENSONIG00000001212)	ints9 (ENSONIG00000001202)	glrx5 (ENSONIG00000001199)	prkrip1 (ENSONIG00000020920)	ENSONIG00000030358	clmnb (ENSONIG00000029179)
Midas cichlid	MODERN SPECIES	711	ENSACIG00000011559	mep1a.2 (ENSACIG00000011571)	mep1a.1 (ENSACIG00000011626)	ENSACIG00000011649	brox (ENSACIG00000011669)	ENSACIG00000011696	ENSACIG00000011702	ENSACIG00000011715	TLR5 (ENSACIG00000011731)	disp1 (ENSACIG00000011853)	HMBOX1 (ENSACIG00000011971)	snap25a (ENSACIG00000011995)	ENSACIG00000012004	cnstb (ENSACIG00000012033) #17	ENSACIG00000012055 #20	hnrnpub (ENSACIG00000012138) #22	lft1 (ENSACIG00000012429)	cdc42bpab (ENSACIG00000012444)	fzd3a (ENSACIG00000012531)	fbxo16 (ENSACIG00000012556)	fam49a (ENSACIG00000012571)	vsnl1a (ENSACIG00000012597)	sf3b6 (ENSACIG00000012608)	ENSACIG00000012623	ENSACIG00000012633	pla2g7 (ENSACIG00000012654)	ints9 (ENSACIG00000012679)	glrx5 (ENSACIG00000012724)	prkrip1 (ENSACIG00000012768)	ENSACIG00000012793	serpina1l (ENSACIG00000012825)
Pomacentridae	ANCESTRAL SPECIES	30	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Pomacentridae_A	ANCESTRAL SPECIES	26	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Amphiprion	ANCESTRAL SPECIES	113	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Orange clownfish	MODERN SPECIES	2	ENSAPEG00000014090	elp3 (ENSAPEG00000014113)	si:ch211-63o20.7 (ENSAPEG00000014157)	pnocb (ENSAPEG00000014170)	znf395b (ENSAPEG00000014182)	paqr8 (ENSAPEG00000014188)	mcm3 (ENSAPEG00000014200)	ENSAPEG00000014273	stmn4 (ENSAPEG00000014317)	emilin1a (ENSAPEG00000014361)	ankef1a (ENSAPEG00000014440)	snap25a (ENSAPEG00000014574)	sccpdhb (ENSAPEG00000014595) #16	cnstb (ENSAPEG00000014613) #17	ENSAPEG00000014631 #20	hnrnpub (ENSAPEG00000014679) #22	lft1 (ENSAPEG00000014731)	cdc42bpab (ENSAPEG00000014843)	fzd3a (ENSAPEG00000015142)	fbxo16 (ENSAPEG00000015182)	fam49a (ENSAPEG00000015213)	vsnl1a (ENSAPEG00000015297)	sf3b6 (ENSAPEG00000015311)	tdrd6 (ENSAPEG00000015328)	pla2g7 (ENSAPEG00000015345)	ints9 (ENSAPEG00000015363)	glrx5 (ENSAPEG00000015433)	prkrip1 (ENSAPEG00000015439)	clmnb (ENSAPEG00000015453)	ENSAPEG00000015475	SERPINA4 (ENSAPEG00000015491)
Clown anemonefish	MODERN SPECIES	610															ENSAOCG00000015897 #20	hnrnpub (ENSAOCG00000015843) #22	lft1 (ENSAOCG00000015825)	cdc42bpab (ENSAOCG00000015715)
Spiny chromis	MODERN SPECIES	606												snap25a (ENSAPOG00000017456)	sccpdhb (ENSAPOG00000017439) #16	cnstb (ENSAPOG00000017427) #17	ENSAPOG00000017413 #20	hnrnpub (ENSAPOG00000017400) #22	lft1 (ENSAPOG00000017349)	ENSAPOG00000000468	nefma (ENSAPOG00000017321)	neflb (ENSAPOG00000017313)	pgam2 (ENSAPOG00000017307)	ENSAPOG00000017287
Bicolor damselfish	MODERN SPECIES	2474															ENSSPAG00000011879 #20	hnrnpub (ENSSPAG00000011853) #22	lft1 (ENSSPAG00000011839)	cdc42bpab (ENSSPAG00000011744)
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Tetraodontidae	ANCESTRAL SPECIES	15	ENSGT00390000012703.a	ENSGT00990000203619.A.b.b.a.h	ENSGT00990000203619.A.b.b.a.g	ENSGT00940000154856.B.d	ENSGT00390000013943	ENSGT00940000155089.r.a	ENSGT00940000155089.r.b	ENSGT00940000155208.b	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000162581	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000159075.B	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.h	ENSGT00940000158937.b	ENSGT00390000016736.a.j
Fugu	MODERN SPECIES	7	VASH2 (ENSTRUG00000021366)	ENSTRUG00000027031	GPR31 (ENSTRUG00000022624)	ENSTRUG00000010359	plg (ENSTRUG00000008578)	ENSTRUG00000020488	igf2r (ENSTRUG00000009213)	slc22a2 (ENSTRUG00000008932)	slc22a2 (ENSTRUG00000022622)	vgll2a (ENSTRUG00000008567)	rfx6 (ENSTRUG00000008447)	tdrd15 (ENSTRUG00000008435)	snap25a (ENSTRUG00000008313)	cnstb (ENSTRUG00000021404) #17	ENSTRUG00000029286 #20	hnrnpub (ENSTRUG00000007759) #22	lft1 (ENSTRUG00000007659)	cdc42bpab (ENSTRUG00000007283)	fzd3a (ENSTRUG00000031124)	fam49a (ENSTRUG00000006726)	vsnl1a (ENSTRUG00000022140)	sf3b6 (ENSTRUG00000025286)	ints9 (ENSTRUG00000006014)	ENSTRUG00000031160	ENSTRUG00000030053	glrx5 (ENSTRUG00000021703)	prkrip1 (ENSTRUG00000005932)	ENSTRUG00000030778	ENSTRUG00000024190	serpina1l (ENSTRUG00000005548)	flrt2 (ENSTRUG00000032580)
Tetraodon	MODERN SPECIES	5	ENSTNIG00000009736	ENSTNIG00000001141	ENSTNIG00000009735	igf2r (ENSTNIG00000009734)	slc22a2 (ENSTNIG00000009733)	slc22a2 (ENSTNIG00000009732)	slc22a2 (ENSTNIG00000009731)	slc22a2 (ENSTNIG00000000787)	slc22a2 (ENSTNIG00000000453)	plg (ENSTNIG00000009730)	vgll2a (ENSTNIG00000009729)	rfx6 (ENSTNIG00000009728)	tdrd15 (ENSTNIG00000000258)	snap25a (ENSTNIG00000009727)	ENSTNIG00000009726	hnrnpub (ENSTNIG00000009725) #22	lft1 (ENSTNIG00000009724)	cdc42bpab (ENSTNIG00000009723)	ENSTNIG00000009722	fam49a (ENSTNIG00000009721)	vsnl1a (ENSTNIG00000009720)	sf3b6 (ENSTNIG00000009719)	pla2g7 (ENSTNIG00000009718)	ints9 (ENSTNIG00000009717)	glrx5 (ENSTNIG00000009716)	prkrip1 (ENSTNIG00000009715)	ENSTNIG00000009714	ENSTNIG00000009713	serpina1l (ENSTNIG00000009712)	flrt2 (ENSTNIG00000009711)	zgc:153383 (ENSTNIG00000009710)
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Ballan wrasse	MODERN SPECIES	41	elp3 (ENSLBEG00000021916)	si:ch211-63o20.7 (ENSLBEG00000021971)	pnocb (ENSLBEG00000021986)	znf395b (ENSLBEG00000022000)	paqr8 (ENSLBEG00000022027)	mcm3 (ENSLBEG00000022065)	ENSLBEG00000022137	stmn4 (ENSLBEG00000022173)	emilin1a (ENSLBEG00000022192)	ankef1a (ENSLBEG00000022262)	snap25a (ENSLBEG00000022394)	sccpdhb (ENSLBEG00000022425) #16	ENSLBEG00000022446	cnstb (ENSLBEG00000022460) #17	ENSLBEG00000022484 #20	hnrnpub (ENSLBEG00000022520) #22	lft1 (ENSLBEG00000022573)	cdc42bpab (ENSLBEG00000022609)	fzd3a (ENSLBEG00000022728)	fbxo16 (ENSLBEG00000022850)	fam49a (ENSLBEG00000022873)	vsnl1a (ENSLBEG00000022928)	sf3b6 (ENSLBEG00000022937)	tdrd6 (ENSLBEG00000022955)	pla2g7 (ENSLBEG00000022973)	ints9 (ENSLBEG00000023003)	glrx5 (ENSLBEG00000023044)	prkrip1 (ENSLBEG00000023056)	ENSLBEG00000023109	SERPINA4 (ENSLBEG00000023129)	ENSLBEG00000023148
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Perciformes	ANCESTRAL SPECIES	14	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT01030000235230	ENSGT00980000199001	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Cottioidei	ANCESTRAL SPECIES	28	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT01050000244824.B	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT01030000235230	ENSGT00980000199001	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Lumpfish	MODERN SPECIES	16	TLR5 (ENSCLMG00005019882)	disp1 (ENSCLMG00005020064)	HMBOX1 (ENSCLMG00005020065)	KIF13B (ENSCLMG00005020093)	elp3 (ENSCLMG00005020255)	si:ch211-63o20.7 (ENSCLMG00005020275)	pnocb (ENSCLMG00005020276)	znf395b (ENSCLMG00005020277)	mcm3 (ENSCLMG00005020280)	ENSCLMG00005020285	stmn4 (ENSCLMG00005020288)	emilin1a (ENSCLMG00005020290)	ankef1a (ENSCLMG00005020291)	snap25a (ENSCLMG00005020299)	ENSCLMG00005020301	hnrnpub (ENSCLMG00005020305) #22	lft1 (ENSCLMG00005020334)	cdc42bpab (ENSCLMG00005020405)	fzd3a (ENSCLMG00005002830)	fbxo16 (ENSCLMG00005002871)	fam49a (ENSCLMG00005002940)	vsnl1a (ENSCLMG00005003163)	sf3b6 (ENSCLMG00005003164)	tdrd6 (ENSCLMG00005003166)	pla2g7 (ENSCLMG00005003171)	ints9 (ENSCLMG00005003240)	glrx5 (ENSCLMG00005005824)	prkrip1 (ENSCLMG00005005825)	clmnb (ENSCLMG00005005828)	ENSCLMG00005005830	serpina1l (ENSCLMG00005005833)
Stickleback	MODERN SPECIES	18	KIF13B (ENSGACG00000004401)	elp3 (ENSGACG00000004427)	si:ch211-63o20.7 (ENSGACG00000004453)	pnocb (ENSGACG00000004461)	znf395b (ENSGACG00000004464)	mcm3 (ENSGACG00000004469)	stmn4 (ENSGACG00000004482)	emilin1a (ENSGACG00000004508)	ankef1a (ENSGACG00000004520)	snap25a (ENSGACG00000004546)	ENSGACG00000004618	ENSGACG00000004653	ENSGACG00000004657	ENSGACG00000004658	ENSGACG00000004668 #20	hnrnpub (ENSGACG00000004679) #22	lft1 (ENSGACG00000004693)	cdc42bpab (ENSGACG00000004707)	fzd3a (ENSGACG00000004714)	fbxo16 (ENSGACG00000004722)	ENSGACG00000004726	fam49a (ENSGACG00000004727)	vsnl1a (ENSGACG00000004784)	sf3b6 (ENSGACG00000004803)	tdrd6 (ENSGACG00000004820)	pla2g7 (ENSGACG00000004825)	ints9 (ENSGACG00000004893)	glrx5 (ENSGACG00000004913)	prkrip1 (ENSGACG00000004935)	serpina1l (ENSGACG00000004940)	flrt2 (ENSGACG00000005013)
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Channel bull blenny	MODERN SPECIES	16	elp3 (ENSCGOG00000003965)	si:ch211-63o20.7 (ENSCGOG00000003948)	pnocb (ENSCGOG00000003945)	znf395b (ENSCGOG00000003942)	paqr8 (ENSCGOG00000003937)	mcm3 (ENSCGOG00000002993)	il17a/f3 (ENSCGOG00000002946)	stmn4 (ENSCGOG00000002938)	emilin1a (ENSCGOG00000002936)	ankef1a (ENSCGOG00000002928)	ENSCGOG00000002918	snap25a (ENSCGOG00000002816)	sccpdhb (ENSCGOG00000022232) #16	cnstb (ENSCGOG00000022223) #17	ENSCGOG00000022216	hnrnpub (ENSCGOG00000022201) #22	lft1 (ENSCGOG00000022197)	cdc42bpab (ENSCGOG00000017526)	fbxo16 (ENSCGOG00000017358)	fam49a (ENSCGOG00000017328)	VSNL1 (ENSCGOG00000017323)	sf3b6 (ENSCGOG00000017320)	tdrd6 (ENSCGOG00000017316)	pla2g7 (ENSCGOG00000017181)	ints9 (ENSCGOG00000016684)	glrx5 (ENSCGOG00000016659)	prkrip1 (ENSCGOG00000016656)	ENSCGOG00000016653	ENSCGOG00000016647	ENSCGOG00000016645	ENSCGOG00000016532
Pike perch	MODERN SPECIES	129	pnocb (ENSSLUG00000013270)	znf395b (ENSSLUG00000013264)	paqr8 (ENSSLUG00000013262)	mcm3 (ENSSLUG00000013146)	ENSSLUG00000013112	stmn4 (ENSSLUG00000013099)	emilin1a (ENSSLUG00000013089)	ankef1a (ENSSLUG00000013081)	snap25a (ENSSLUG00000013056)	ENSSLUG00000013049	sccpdhb (ENSSLUG00000013041) #16	ENSSLUG00000013036	ENSSLUG00000013030	ENSSLUG00000013024 #17	ENSSLUG00000013010 #20	hnrnpub (ENSSLUG00000012886) #22	lft1 (ENSSLUG00000012848)	cdc42bpab (ENSSLUG00000012618)	fzd3a (ENSSLUG00000012560)	fbxo16 (ENSSLUG00000012553)	fam49a (ENSSLUG00000012296)	ENSSLUG00000012279	vsnl1a (ENSSLUG00000012273)	sf3b6 (ENSSLUG00000012269)	tdrd6 (ENSSLUG00000012258)	pla2g7 (ENSSLUG00000012216)	ints9 (ENSSLUG00000012161)	glrx5 (ENSSLUG00000012143)	prkrip1 (ENSSLUG00000012139)	SERPINA4 (ENSSLUG00000012128)	ENSSLUG00000012123
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
European seabass	MODERN SPECIES	7	ENSDLAG00005030130	ENSDLAG00005000329	elp3 (ENSDLAG00005028766)	si:ch211-63o20.7 (ENSDLAG00005000871)	znf395b (ENSDLAG00005000893)	mcm3 (ENSDLAG00005000903)	ENSDLAG00005000925	stmn4 (ENSDLAG00005000928)	emilin1a (ENSDLAG00005000932)	ankef1a (ENSDLAG00005000937)	snap25a (ENSDLAG00005000946)	sccpdhb (ENSDLAG00005000966) #16	cnstb (ENSDLAG00005028602) #17	ENSDLAG00005001031 #20	ENSDLAG00005001037	hnrnpub (ENSDLAG00005001043) #22	lft1 (ENSDLAG00005001061)	cdc42bpab (ENSDLAG00005001801)	fzd3a (ENSDLAG00005014961)	fbxo16 (ENSDLAG00005014987)	ENSDLAG00005015016	vsnl1a (ENSDLAG00005032329)	ENSDLAG00005033766	ENSDLAG00005034488	tdrd6 (ENSDLAG00005015258)	ENSDLAG00005015263	ENSDLAG00005015287	glrx5 (ENSDLAG00005016017)	ENSDLAG00005029987	ENSDLAG00005016037	ENSDLAG00005034336
Large yellow croaker	MODERN SPECIES	482	KIF13B (ENSLCRG00005020915)	elp3 (ENSLCRG00005020704)	si:ch211-63o20.7 (ENSLCRG00005020703)	pnocb (ENSLCRG00005020701)	znf395b (ENSLCRG00005020700)	paqr8 (ENSLCRG00005020699)	mcm3 (ENSLCRG00005020698)	il17a/f3 (ENSLCRG00005020696)	stmn4 (ENSLCRG00005020695)	emilin1a (ENSLCRG00005020694)	ankef1a (ENSLCRG00005020693)	snap25a (ENSLCRG00005020677)	cnstb (ENSLCRG00005020670) #17	ENSLCRG00005020667 #20	ENSLCRG00005020666	hnrnpub (ENSLCRG00005020466) #22	lft1 (ENSLCRG00005020460)	cdc42bpab (ENSLCRG00005008268)	fzd3a (ENSLCRG00005008135)	fbxo16 (ENSLCRG00005008133)	fam49a (ENSLCRG00005008104)	vsnl1a (ENSLCRG00005008100)	sf3b6 (ENSLCRG00005008098)	ENSLCRG00005008096	gopc (ENSLCRG00005008086)	ENSLCRG00005008082	ENSLCRG00005008079	snapc4 (ENSLCRG00005008078)	ENSLCRG00005008077	pomt1 (ENSLCRG00005007669)	ENSLCRG00005007661
Gilthead seabream	MODERN SPECIES	14	disp1 (ENSSAUG00010020877)	HMBOX1 (ENSSAUG00010020875)	KIF13B (ENSSAUG00010017552)	elp3 (ENSSAUG00010017444)	pnocb (ENSSAUG00010017434)	znf395b (ENSSAUG00010017431)	mcm3 (ENSSAUG00010017176)	ENSSAUG00010017139	si:ch211-63o20.7 (ENSSAUG00010017137)	emilin1a (ENSSAUG00010017133)	ankef1a (ENSSAUG00010017130)	snap25a (ENSSAUG00010017119)	sccpdhb (ENSSAUG00010016662) #16	cnstb (ENSSAUG00010016650) #17	ENSSAUG00010016648 #20	hnrnpub (ENSSAUG00010016615) #22	lft1 (ENSSAUG00010016610)	ENSSAUG00010016609	cdc42bpab (ENSSAUG00010011853)	fzd3a (ENSSAUG00010011760)	fbxo16 (ENSSAUG00010011755)	fam49a (ENSSAUG00010011251)	vsnl1a (ENSSAUG00010011247)	sf3b6 (ENSSAUG00010011245)	tdrd6 (ENSSAUG00010011244)	pla2g7 (ENSSAUG00010011236)	ints9 (ENSSAUG00010011220)	glrx5 (ENSSAUG00010011219)	prkrip1 (ENSSAUG00010011218)	ENSSAUG00010011216	ENSSAUG00010011215
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000160877.g.a	ENSGT00940000160877.g.b
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000160877.g.a	ENSGT00940000160877.g.b
Climbing perch	MODERN SPECIES	15	ENSATEG00000015673	elp3 (ENSATEG00000015813)	si:ch211-63o20.7 (ENSATEG00000015842)	pnocb (ENSATEG00000027895)	znf395b (ENSATEG00000015873)	paqr8 (ENSATEG00000015880)	mcm3 (ENSATEG00000015894)	stmn4 (ENSATEG00000027591)	ENSATEG00000015923	emilin1a (ENSATEG00000015971)	ankef1a (ENSATEG00000015998)	snap25a (ENSATEG00000016086)	cnstb (ENSATEG00000016109) #17	ENSATEG00000016123 #20	ENSATEG00000027762	hnrnpub (ENSATEG00000016178) #22	lft1 (ENSATEG00000016192)	cdc42bpab (ENSATEG00000016212)	fzd3a (ENSATEG00000016313)	fbxo16 (ENSATEG00000016459)	ENSATEG00000016512	VSNL1 (ENSATEG00000029333)	ENSATEG00000027650	tdrd6 (ENSATEG00000016586)	ENSATEG00000016596	ENSATEG00000016623	glrx5 (ENSATEG00000029839)	ENSATEG00000016695	clmnb (ENSATEG00000016718)	ENSATEG00000030123	ENSATEG00000017152
Siamese fighting fish	MODERN SPECIES	13	znf395b (ENSBSLG00000010635)	paqr8 (ENSBSLG00000010652)	mcm3 (ENSBSLG00000010778)	il17a/f3 (ENSBSLG00000011580)	stmn4 (ENSBSLG00000011614)	ENSBSLG00000011653	ENSBSLG00000011717	ENSBSLG00000011844	ENSBSLG00000011894	ENSBSLG00000011863	emilin1a (ENSBSLG00000011916)	ankef1a (ENSBSLG00000011931)	snap25a (ENSBSLG00000011993)	cnstb (ENSBSLG00000012126) #17	ENSBSLG00000012187 #20	hnrnpub (ENSBSLG00000013195) #22	lft1 (ENSBSLG00000013468)	cdc42bpab (ENSBSLG00000013848)	fzd3a (ENSBSLG00000021061)	fbxo16 (ENSBSLG00000021164)	fam49a (ENSBSLG00000021236)	VSNL1 (ENSBSLG00000021332)	sf3b6 (ENSBSLG00000021343)	tdrd6 (ENSBSLG00000021359)	pla2g7 (ENSBSLG00000021393)	ints9 (ENSBSLG00000021460)	glrx5 (ENSBSLG00000021696)	prkrip1 (ENSBSLG00000021718)	serpina1l (ENSBSLG00000021749)	flrt2 (ENSBSLG00000021911)	zgc:153383 (ENSBSLG00000021923)
Zig-zag eel	MODERN SPECIES	16	ENSMAMG00000006435	ENSMAMG00000006450	elp3 (ENSMAMG00000006874)	si:ch211-63o20.7 (ENSMAMG00000006887)	pnocb (ENSMAMG00000006903)	znf395b (ENSMAMG00000006924)	paqr8 (ENSMAMG00000006934)	mcm3 (ENSMAMG00000006953)	ENSMAMG00000007001	stmn4 (ENSMAMG00000007012)	ENSMAMG00000027512	emilin1a (ENSMAMG00000007042)	ankef1a (ENSMAMG00000007059)	snap25a (ENSMAMG00000007092)	cnstb (ENSMAMG00000007139) #17	hnrnpub (ENSMAMG00000007196) #22	lft1 (ENSMAMG00000007252)	cdc42bpab (ENSMAMG00000007328)	ENSMAMG00000025640	fzd3a (ENSMAMG00000007585)	fbxo16 (ENSMAMG00000028207)	ENSMAMG00000026352	VSNL1 (ENSMAMG00000024490)	ENSMAMG00000007713	tdrd6 (ENSMAMG00000007725)	ENSMAMG00000007737	ENSMAMG00000007772	glrx5 (ENSMAMG00000007846)	ENSMAMG00000007826	ENSMAMG00000026750	ENSMAMG00000007900
Carangaria	ANCESTRAL SPECIES	18	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Seriola	ANCESTRAL SPECIES	4	ENSGT00940000155321.e	ENSGT00940000177326	ENSGT00940000177235	ENSGT01100000263671	ENSGT00940000163960.b	ENSGT00950000183074.B.a.a	ENSGT00720000108839	ENSGT00940000158598	ENSGT00390000004380	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000160877.g.a
Greater amberjack	MODERN SPECIES	10	ENSSDUG00000005320	ENSSDUG00000005503	ENSSDUG00000005512	ENSSDUG00000005524	ENSSDUG00000005530	scara5 (ENSSDUG00000005539)	pbk (ENSSDUG00000005574)	esco2 (ENSSDUG00000005598)	ccdc25 (ENSSDUG00000005633)	emilin1a (ENSSDUG00000005684)	ankef1a (ENSSDUG00000005717)	snap25a (ENSSDUG00000005763)	sccpdhb (ENSSDUG00000005787) #16	cnstb (ENSSDUG00000005871) #17	ENSSDUG00000005888 #20	hnrnpub (ENSSDUG00000005912) #22	lft1 (ENSSDUG00000005938)	cdc42bpab (ENSSDUG00000006033)	fzd3a (ENSSDUG00000006414)	fbxo16 (ENSSDUG00000006444)	fam49a (ENSSDUG00000006465)	vsnl1a (ENSSDUG00000006520)	sf3b6 (ENSSDUG00000006538)	tdrd6 (ENSSDUG00000006559)	pla2g7 (ENSSDUG00000006633)	ints9 (ENSSDUG00000006662)	glrx5 (ENSSDUG00000006717)	prkrip1 (ENSSDUG00000006727)	ENSSDUG00000006761	ENSSDUG00000006778	ENSSDUG00000006794
Yellowtail amberjack	MODERN SPECIES	3189	zgc:194224 (ENSSLDG00000005534)	GNPAT (ENSSLDG00000005511)	ENSSLDG00000005498	ENSSLDG00000005483	ENSSLDG00000005469	scara5 (ENSSLDG00000005438)	pbk (ENSSLDG00000005406)	ESCO2 (ENSSLDG00000005387)	ccdc25 (ENSSLDG00000005342)	emilin1a (ENSSLDG00000005310)	ankef1a (ENSSLDG00000005191)	snap25a (ENSSLDG00000005036)	sccpdhb (ENSSLDG00000005004) #16	cnstb (ENSSLDG00000004976) #17	ENSSLDG00000004961	hnrnpub (ENSSLDG00000004899) #22	lft1 (ENSSLDG00000004819)	cdc42bpab (ENSSLDG00000004690)	fzd3a (ENSSLDG00000004639)	fbxo16 (ENSSLDG00000004622)	fam49a (ENSSLDG00000004552)	vsnl1a (ENSSLDG00000004517)	sf3b6 (ENSSLDG00000004494)	tdrd6 (ENSSLDG00000004470)	pla2g7 (ENSSLDG00000004445)	ints9 (ENSSLDG00000004386)	glrx5 (ENSSLDG00000004359)	prkrip1 (ENSSLDG00000004322)	ENSSLDG00000004283	ENSSLDG00000004276	ENSSLDG00000004077
Barramundi perch	MODERN SPECIES	126	KIF13B (ENSLCAG00010005696)	elp3 (ENSLCAG00010005534)	si:ch211-63o20.7 (ENSLCAG00010005523)	pnocb (ENSLCAG00010005519)	znf395b (ENSLCAG00010005513)	paqr8 (ENSLCAG00010005512)	mcm3 (ENSLCAG00010005468)	ENSLCAG00010005449	stmn4 (ENSLCAG00010005448)	emilin1a (ENSLCAG00010005443)	ankef1a (ENSLCAG00010005442)	snap25a (ENSLCAG00010005413)	sccpdhb (ENSLCAG00010005391) #16	cnstb (ENSLCAG00010005375) #17	ENSLCAG00010005369 #20	hnrnpub (ENSLCAG00010005315) #22	lft1 (ENSLCAG00010005297)	cdc42bpab (ENSLCAG00010004587)	fzd3a (ENSLCAG00010004464)	fbxo16 (ENSLCAG00010004458)	fam49a (ENSLCAG00010004431)	vsnl1a (ENSLCAG00010004412)	sf3b6 (ENSLCAG00010004406)	ENSLCAG00010004395	pla2g7 (ENSLCAG00010004359)	ints9 (ENSLCAG00010004329)	glrx5 (ENSLCAG00010004318)	prkrip1 (ENSLCAG00010004317)	ENSLCAG00010004309	ENSLCAG00010004306	ENSLCAG00010004304
Pleuronectoidei	ANCESTRAL SPECIES	46	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00940000157136.b	ENSGT00940000159860.e	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021
Tongue sole	MODERN SPECIES	24	HMBOX1 (ENSCSEG00000010512)	KIF13B (ENSCSEG00000010536)	elp3 (ENSCSEG00000010569)	si:ch211-63o20.7 (ENSCSEG00000010600)	ENSCSEG00000010612	znf395b (ENSCSEG00000010616)	paqr8 (ENSCSEG00000010624)	mcm3 (ENSCSEG00000010629)	il17a/f3 (ENSCSEG00000010649)	stmn4 (ENSCSEG00000010659)	emilin1a (ENSCSEG00000010674)	ankef1a (ENSCSEG00000010701)	snap25a (ENSCSEG00000010748)	cnstb (ENSCSEG00000010773) #17	ENSCSEG00000010789 #20	hnrnpub (ENSCSEG00000010804) #22	lft1 (ENSCSEG00000010820)	cdc42bpab (ENSCSEG00000010828)	fzd3a (ENSCSEG00000010870)	fbxo16 (ENSCSEG00000010900)
Turbot	MODERN SPECIES	12	ENSSMAG00000002902	ELP3 (ENSSMAG00000002962)	pnocb (ENSSMAG00000003062)	si:ch211-63o20.7 (ENSSMAG00000003079)	znf395b (ENSSMAG00000003089)	paqr8 (ENSSMAG00000003117)	mcm3 (ENSSMAG00000003130)	ENSSMAG00000003245	stmn4 (ENSSMAG00000037598)	emilin1a (ENSSMAG00000003273)	ankef1a (ENSSMAG00000003325)	snap25a (ENSSMAG00000003362)	sccpdhb (ENSSMAG00000003507) #16	cnstb (ENSSMAG00000003574) #17	ENSSMAG00000003590 #20	hnrnpub (ENSSMAG00000003607) #22	lft1 (ENSSMAG00000003629)	cdc42bpab (ENSSMAG00000003667)	ENSSMAG00000026000	fzd3a (ENSSMAG00000003731)	fbxo16 (ENSSMAG00000003762)	ENSSMAG00000003785	ENSSMAG00000003828	ENSSMAG00000003839	ENSSMAG00000022464	ccnk (ENSSMAG00000003887)	ccdc85cb (ENSSMAG00000003921)	cyp46a1.4 (ENSSMAG00000003961)	ism2b (ENSSMAG00000028217)	sptlc2b (ENSSMAG00000004048)	snw1 (ENSSMAG00000004061)
Tiger tail seahorse	MODERN SPECIES	500	ENSHCOG00000019717	nfkbiaa (ENSHCOG00000019736)	psma6b (ENSHCOG00000019759)	zgc:153383 (ENSHCOG00000019764)	flrt2 (ENSHCOG00000019778)	serpina1l (ENSHCOG00000019784)	glrx5 (ENSHCOG00000019793)	prkrip1 (ENSHCOG00000019826)	ints9 (ENSHCOG00000019893)	pla2g7 (ENSHCOG00000019935)	tdrd6 (ENSHCOG00000019950)	sf3b6 (ENSHCOG00000019962)	vsnl1a (ENSHCOG00000000609)	fam49a (ENSHCOG00000020000)	fbxo16 (ENSHCOG00000020077)	hnrnpub (ENSHCOG00000020091) #22	lft1 (ENSHCOG00000020138)	cdc42bpab (ENSHCOG00000003743)	fzd3a (ENSHCOG00000003769)	ENSHCOG00000003795 #17	sccpdhb (ENSHCOG00000003809) #16	snap25a (ENSHCOG00000003838)	ankef1a (ENSHCOG00000003891)	emilin1a (ENSHCOG00000003905)	stmn4 (ENSHCOG00000003923)	mcm3 (ENSHCOG00000003973)	paqr8 (ENSHCOG00000003989)	znf395b (ENSHCOG00000004001)	pnocb (ENSHCOG00000004019)	si:ch211-63o20.7 (ENSHCOG00000004037)	elp3 (ENSHCOG00000004054)
Pinecone sodierfish	MODERN SPECIES	16	KIF13B (ENSMMDG00005011280)	elp3 (ENSMMDG00005015987)	si:ch211-63o20.7 (ENSMMDG00005016091)	pnocb (ENSMMDG00005016093)	znf395b (ENSMMDG00005016094)	paqr8 (ENSMMDG00005016096)	mcm3 (ENSMMDG00005016110)	ENSMMDG00005016180	stmn4 (ENSMMDG00005016183)	emilin1a (ENSMMDG00005016185)	ankef1a (ENSMMDG00005016192)	snap25a (ENSMMDG00005016197)	sccpdhb (ENSMMDG00005016214) #16	ENSMMDG00005016274	ENSMMDG00005002548 #20	hnrnpub (ENSMMDG00005002655) #22	lft1 (ENSMMDG00005004998)	cdc42bpab (ENSMMDG00005005174)	fzd3a (ENSMMDG00005008184)	fbxo16 (ENSMMDG00005008194)	fam49a (ENSMMDG00005008220)	vsnl1a (ENSMMDG00005008866)	sf3b6 (ENSMMDG00005008867)	tdrd6 (ENSMMDG00005008870)	pla2g7 (ENSMMDG00005008876)	ints9 (ENSMMDG00005008896)	glrx5 (ENSMMDG00005009553)	prkrip1 (ENSMMDG00005009554)	ENSMMDG00005009557	serpina1l (ENSMMDG00005009559)	flrt2 (ENSMMDG00005009606)
Cod	MODERN SPECIES	13	RRM2 (ENSGMOG00000003512)	RRM2 (ENSGMOG00000025006)	klf11a (ENSGMOG00000034525)	taf1b (ENSGMOG00000035265)	ENSGMOG00000024314	ENSGMOG00000014302	ADAM17 (ENSGMOG00000003189)	cpsf3 (ENSGMOG00000003157)	ENSGMOG00000024240	e2f6 (ENSGMOG00000027601)	ENSGMOG00000004734	sccpdhb (ENSGMOG00000036474) #16	cnstb (ENSGMOG00000024227) #17	ENSGMOG00000036691 #20	ENSGMOG00000025770	hnrnpub (ENSGMOG00000001755) #22	lft1 (ENSGMOG00000026818)	cdc42bpab (ENSGMOG00000004971)	fzd3a (ENSGMOG00000036153)	fbxo16 (ENSGMOG00000006779)	ENSGMOG00000034228	ENSGMOG00000009312	psma6b (ENSGMOG00000009319)	nfkbiaa (ENSGMOG00000009326)	ENSGMOG00000009332	ENSGMOG00000036333	psmc1b (ENSGMOG00000009350)	kcnk13b (ENSGMOG00000027682)	ches1 (ENSGMOG00000022839)	gtf2a1 (ENSGMOG00000015861)	tshr (ENSGMOG00000015887)
Protacanthopterygii	ANCESTRAL SPECIES	151	ENSGT00390000007341.a	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT01060000248799.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00940000160877	ENSGT00940000158937.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	199	ENSGT00940000155369.A.d.b.c	ENSGT00940000161931.hb	ENSGT00390000007341.a.j	ENSGT00390000007686.b.c.a.e	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT00940000157766.b.b.g	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00390000004799.bc.a #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000174980	ENSGT00940000156546.`b.a.e #22	ENSGT00390000010056.b.e	ENSGT01030000234517.H.b.j.a	ENSGT00940000156491.a.g.a	ENSGT00940000159021	ENSGT00390000015159.a.b.e
Salmoninae_a	ANCESTRAL SPECIES	23	ENSGT00940000154514.wb	ENSGT00940000155369.A.d.b.c	ENSGT00940000161931.hb	ENSGT00390000007341.a.j	ENSGT00390000007686.b.c.a.e	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT00940000157766.b.b.g	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00390000004799.bc.a #16	ENSGT00390000005861.a.c #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a.e #22	ENSGT00390000010056.b.e	ENSGT01030000234517.H.b.j.a	ENSGT00940000156491.a.g.a	ENSGT00940000159021	ENSGT00390000015159.a.b.e	ENSGT00940000156513.a.b.c	ENSGT00390000005908.d	ENSGT00390000005233.b.e	ENSGT00390000001445.c	ENSGT00550000075082.m	ENSGT00940000160877.j	ENSGT00940000158937.b.e	ENSGT00390000001793	ENSGT00390000014122.b.a	ENSGT00390000003466.o
Salmo	ANCESTRAL SPECIES	26	ENSGT00940000154514.wb	ENSGT00940000155369.A.d.b.c	ENSGT00940000161931.hb	ENSGT00390000007341.a.j	ENSGT00390000007686.b.c.a.e	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT00940000157766.b.b.g	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00390000004799.bc.a #16	ENSGT00390000005861.a.c #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a.e #22	ENSGT00390000010056.b.e	ENSGT01030000234517.H.b.j.a	ENSGT00940000156491.a.g.a	ENSGT00940000159021	ENSGT00390000015159.a.b.e	ENSGT00940000156513.a.b.c	ENSGT00390000005908.d	ENSGT00390000005233.b.e	ENSGT00390000001445.c	ENSGT00550000075082.m	ENSGT00940000158937.b.e	ENSGT00390000001793	ENSGT00390000014122.b.a	ENSGT00390000003466.o	ENSGT00940000155671.y.b.c.a
River trout	MODERN SPECIES	28	MDGA2 (ENSSTUG00000026288)	ENSSTUG00000027953	mgat2 (ENSSTUG00000027960)	ENSSTUG00000027971	WDR20 (ENSSTUG00000032401)	hsp90aa1.1 (ENSSTUG00000032559)	ppp2r5cb (ENSSTUG00000033989)	ENSSTUG00000038125	ENSSTUG00000038130	slc25a29 (ENSSTUG00000038134)	ankef1a (ENSSTUG00000038153)	snap25a (ENSSTUG00000038173)	sccpdhb (ENSSTUG00000038297) #16	cnstb (ENSSTUG00000038526) #17	KIF26B (ENSSTUG00000038536) #20	hnrnpub (ENSSTUG00000038557) #22	lft1 (ENSSTUG00000038621)	cdc42bpab (ENSSTUG00000038977)	fzd3a (ENSSTUG00000049693)	fbxo16 (ENSSTUG00000049708)	fam49a (ENSSTUG00000049712)	vsnl1a (ENSSTUG00000049721)	sf3b6 (ENSSTUG00000049724)	pla2g7 (ENSSTUG00000049730)	ints9 (ENSSTUG00000049753)	flrt2 (ENSSTUG00000049768)	ENSSTUG00000049769	allc (ENSSTUG00000049773)	rps7 (ENSSTUG00000049786)	rnaseh1 (ENSSTUG00000049799)	myt1la (ENSSTUG00000049826)
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000066906	ENSSSAG00000066895	ENSSSAG00000065523	rps29 (ENSSSAG00000065477)	mgat2 (ENSSSAG00000065470)	ENSSSAG00000065380	hsp90aa1.1 (ENSSSAG00000120636)	hsp90aa1.2 (ENSSSAG00000063834)	ppp2r5cb (ENSSSAG00000046833)	slc25a29 (ENSSSAG00000046599)	ankef1a (ENSSSAG00000046589)	ENSSSAG00000046503	sccpdhb (ENSSSAG00000046257) #16	cnstb (ENSSSAG00000106067) #17	ENSSSAG00000046242 #20	hnrnpub (ENSSSAG00000045985) #22	lft1 (ENSSSAG00000045961)	cdc42bpab (ENSSSAG00000044396)	fzd3a (ENSSSAG00000044252)	fbxo16 (ENSSSAG00000044237)	ENSSSAG00000044127	ENSSSAG00000108999	PM14 (ENSSSAG00000044070)	ENSSSAG00000044014	ENSSSAG00000042256	ENSSSAG00000084196	ENSSSAG00000118529	ENSSSAG00000120613	allc (ENSSSAG00000042108)	rps7 (ENSSSAG00000042048)	rnaseh1 (ENSSSAG00000041963)
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT00940000154514.wb	ENSGT00940000155369.A.d.b.c	ENSGT00940000161931.hb	ENSGT00390000007341.a.j	ENSGT00390000007686.b.c.a.e	ENSGT01020000230401.a.a.b.a.a.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT00940000154482.b.b.a.d.wb	ENSGT00940000157766.b.b.g	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00390000004799.bc.a #16	ENSGT00390000005861.a.c #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a.e #22	ENSGT00390000010056.b.e	ENSGT01030000234517.H.b.j.a	ENSGT00940000156491.a.g.a	ENSGT00940000159021	ENSGT00390000015159.a.b.e	ENSGT00940000156513.a.b.c	ENSGT00390000005908.d	ENSGT00390000005233.b.e	ENSGT00390000001445.c	ENSGT00550000075082.m	ENSGT00940000160877.j	ENSGT00940000158937.b.e	ENSGT00390000001793	ENSGT00390000014122.b.a	ENSGT00390000003466.o
Oncorhynchus_a	ANCESTRAL SPECIES	17	ENSGT00940000154514.wb	ENSGT00940000155369.A.d.b.c	ENSGT00940000161931.hb	ENSGT00390000007341.a.j	ENSGT00390000007686.b.c.a.e	ENSGT01020000230401.a.a.b.a.a.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT00940000154482.b.b.a.d.wb	ENSGT00940000157766.b.b.g	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00390000004799.bc.a #16	ENSGT00390000005861.a.c #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a.e #22	ENSGT00390000010056.b.e	ENSGT01030000234517.H.b.j.a	ENSGT00940000156491.a.g.a	ENSGT00940000159021	ENSGT00390000015159.a.b.e	ENSGT00940000156513.a.b.c	ENSGT00390000005908.d	ENSGT00390000005233.b.e	ENSGT00390000001445.c	ENSGT00550000075082.m	ENSGT00940000160877.j	ENSGT00940000158937.b.e	ENSGT00390000001793	ENSGT00390000014122.b.a	ENSGT00390000003466.o
Chinook salmon	MODERN SPECIES	29	prpf39 (ENSOTSG00005035762)	faua (ENSOTSG00005035746)	FKBP3 (ENSOTSG00005035745)	MDGA2 (ENSOTSG00005034899)	ENSOTSG00005034893	mgat2 (ENSOTSG00005034892)	WDR20 (ENSOTSG00005034876)	hsp90aa1.2 (ENSOTSG00005033077)	ppp2r5cb (ENSOTSG00005032589)	ENSOTSG00005032587	slc25a29 (ENSOTSG00005032586)	ankef1a (ENSOTSG00005032580)	snap25a (ENSOTSG00005032579)	sccpdhb (ENSOTSG00005032482) #16	KIF26B (ENSOTSG00005032481) #20	hnrnpub (ENSOTSG00005032480) #22	lft1 (ENSOTSG00005032479)	cdc42bpab (ENSOTSG00005002384)	fzd3a (ENSOTSG00005001905)	fbxo16 (ENSOTSG00005001900)	fam49a (ENSOTSG00005001874)	vsnl1a (ENSOTSG00005001857)	sf3b6 (ENSOTSG00005001845)	pla2g7 (ENSOTSG00005001621)	ints9 (ENSOTSG00005000669)	glrx5 (ENSOTSG00005000642)	ENSOTSG00005000637	flrt2 (ENSOTSG00005000636)	allc (ENSOTSG00005000583)	rps7 (ENSOTSG00005000569)	rnaseh1 (ENSOTSG00005000566)
Coho salmon	MODERN SPECIES	3	MDGA2 (ENSOKIG00005032908)	RPS29 (ENSOKIG00005032840)	mgat2 (ENSOKIG00005032816)	slc25a29 (ENSOKIG00005049433)	ENSOKIG00005049432	ENSOKIG00005049430	ENSOKIG00005049428	ppp2r5cb (ENSOKIG00005049372)	hsp90aa1.2 (ENSOKIG00005049002)	WDR20 (ENSOKIG00005048903)	ankef1a (ENSOKIG00005048864)	snap25a (ENSOKIG00005048846)	sccpdhb (ENSOKIG00005048793) #16	cnstb (ENSOKIG00005048777) #17	KIF26B (ENSOKIG00005048767) #20	hnrnpub (ENSOKIG00005048760) #22	lft1 (ENSOKIG00005048753)	cdc42bpab (ENSOKIG00005036375)	fzd3a (ENSOKIG00005035347)	fbxo16 (ENSOKIG00005035322)	fam49a (ENSOKIG00005035227)	VSNL1 (ENSOKIG00005035186)	sf3b6 (ENSOKIG00005035101)	pla2g7 (ENSOKIG00005034911)	ints9 (ENSOKIG00005033927)	GLRX5 (ENSOKIG00005033883)	ENSOKIG00005033779	allc (ENSOKIG00005033586)	rps7 (ENSOKIG00005033479)	rnaseh1 (ENSOKIG00005033389)	myt1la (ENSOKIG00005033189)
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000015312	slc25a29 (ENSOMYG00000036313)	ENSOMYG00000068269	ENSOMYG00000073674	ENSOMYG00000036328	ENSOMYG00000068519	ppp2r5cb (ENSOMYG00000036431)	hsp90aa1.2 (ENSOMYG00000036907)	ENSOMYG00000036700	ankef1a (ENSOMYG00000036250)	ENSOMYG00000036183	ENSOMYG00000055832	sccpdhb (ENSOMYG00000035651) #16	cnstb (ENSOMYG00000066749) #17	ENSOMYG00000035566 #20	hnrnpub (ENSOMYG00000035422) #22	lft1 (ENSOMYG00000035375)	ENSOMYG00000069165	cdc42bpab (ENSOMYG00000033912)	fzd3a (ENSOMYG00000033717)	fbxo16 (ENSOMYG00000033712)	ENSOMYG00000032410	ENSOMYG00000032180	ENSOMYG00000032172	ENSOMYG00000054940	ENSOMYG00000032127	ENSOMYG00000032061	ENSOMYG00000031976	ENSOMYG00000031958	ENSOMYG00000061530	ENSOMYG00000071871
Huchen	MODERN SPECIES	493			WDR20 (ENSHHUG00000050405)	hsp90aa1.1 (ENSHHUG00000050418)	hsp90aa1.2 (ENSHHUG00000050772)	ppp2r5cb (ENSHHUG00000050963)	ENSHHUG00000051001	ENSHHUG00000051005	slc25a29 (ENSHHUG00000051009)	ankef1a (ENSHHUG00000051014)	snap25a (ENSHHUG00000051020)	ENSHHUG00000051044	sccpdhb (ENSHHUG00000051046) #16	ENSHHUG00000051082 #20	ENSHHUG00000051089	hnrnpub (ENSHHUG00000051090) #22	lft1 (ENSHHUG00000051091)	cdc42bpab (ENSHHUG00000051099)	fzd3a (ENSHHUG00000052370)	fbxo16 (ENSHHUG00000052372)	fam49a (ENSHHUG00000052377)
Salmoninae	ANCESTRAL SPECIES	106																ENSGT00940000156546.`b.a.f #22	ENSGT00390000010056.b.f	ENSGT01030000234517.H.b.j.b	ENSGT00940000156491.a.g.b	ENSGT00390000015159.a.b.f	ENSGT00940000156513.a.b	ENSGT00390000005908.d	ENSGT00390000005233.b.e	ENSGT00390000001445.c	ENSGT00550000075082.m	ENSGT00940000160877.j	ENSGT00390000005908.c	ENSGT00940000159049.a	ENSGT00390000005233.b.f	ENSGT00390000001445.d	ENSGT00550000075082.n
Salmoninae_a	ANCESTRAL SPECIES	30	ENSGT00940000161931.ib	ENSGT00390000007341.a.i	ENSGT01060000248717.a.b.b.b	ENSGT01060000248717.a.a.b	ENSGT00390000007686.b.c.a.f	ENSGT01020000230401.a.a.b.a.a.a	ENSGT01030000234620.a.a.a.a.a.a.c.b	ENSGT00940000154482.b.b.a.d.vb.a	ENSGT00940000159694.b	ENSGT00940000157766.b.b.h	ENSGT01060000248799.b	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.a	ENSGT00390000004799.bc.b #16	ENSGT00390000005861.a.d #17	ENSGT00940000174980	ENSGT00940000156546.`b.a.f #22	ENSGT00390000010056.b.f	ENSGT01030000234517.H.b.j.b	ENSGT00940000156491.a.g.b	ENSGT00390000015159.a.b.f	ENSGT01000000216711	ENSGT00940000156513.a.b.d	ENSGT00390000005908.c	ENSGT00940000159049.a	ENSGT00390000005233.b.f	ENSGT00390000001445.d	ENSGT00550000075082.n	ENSGT00940000160877.i	ENSGT00940000158937.b.f	ENSGT00390000014122.b.b	ENSGT00390000003466.p
Salmo	ANCESTRAL SPECIES	12	ENSGT00390000007341.a.i	ENSGT01060000248717.a.b.a	ENSGT01060000248717.a.a.b	ENSGT00390000007686.b.c.a.f	ENSGT01020000230401.a.a.b.a.a.a	ENSGT01030000234620.a.a.a.a.a.a.c.b	ENSGT00940000154482.b.b.a.d.vb.a	ENSGT00940000159694.b	ENSGT00940000157766.b.b.h	ENSGT01060000248717.b.a.a.a	ENSGT01060000248799.b	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.a	ENSGT00390000004799.bc.b #16	ENSGT00390000005861.a.d #17	ENSGT00940000174980	ENSGT00940000156546.`b.a.f #22	ENSGT00390000010056.b.f	ENSGT01030000234517.H.b.j.b	ENSGT00940000156491.a.g.b	ENSGT00390000015159.a.b.f	ENSGT01000000216711	ENSGT00940000156513.a.b.d	ENSGT00390000005908.c	ENSGT00940000159049.a	ENSGT00390000005233.b.f	ENSGT00390000001445.d	ENSGT00550000075082.n	ENSGT00940000160877.i	ENSGT00940000158937.b.f	ENSGT00390000014122.b.b	ENSGT00390000003466.p
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000052456	ENSSSAG00000119421	ENSSSAG00000042593	hsp90aa1.2 (ENSSSAG00000042708)	ppp2r5cb (ENSSSAG00000044388)	ENSSSAG00000111256	ENSSSAG00000043679	slc25a47a (ENSSSAG00000043687)	slc25a29 (ENSSSAG00000119321)	ENSSSAG00000043734	ENSSSAG00000043741	ENSSSAG00000115098	sn25a (ENSSSAG00000043755)	sccpdhb (ENSSSAG00000044042) #16	ENSSSAG00000044141	hnrnpub (ENSSSAG00000044210) #22	lft1 (ENSSSAG00000047406)	cdc42bpab (ENSSSAG00000048020)	fzd3a (ENSSSAG00000076242)	ENSSSAG00000076262	ENSSSAG00000096893	ENSSSAG00000112003	vsnl1a (ENSSSAG00000076443)	PM14 (ENSSSAG00000090330)	tdrd6 (ENSSSAG00000076449)	ENSSSAG00000117770	ENSSSAG00000076487	ENSSSAG00000105758	ENSSSAG00000076499	ENSSSAG00000094089	rps7 (ENSSSAG00000076506)
River trout	MODERN SPECIES		ENSSTUG00000002016	ENSSTUG00000001967	WDR20 (ENSSTUG00000001925)	hsp90aa1.2 (ENSSTUG00000001605)	ppp2r5cb (ENSSTUG00000000840)	ENSSTUG00000000785	ENSSTUG00000000780	slc25a47a (ENSSTUG00000000777)	slc25a29 (ENSSTUG00000000770)	ENSSTUG00000000764	ENSSTUG00000000753	snap25a (ENSSTUG00000000740)	sccpdhb (ENSSTUG00000000730) #16	cnstb (ENSSTUG00000000725) #17	ENSSTUG00000000718	hnrnpub (ENSSTUG00000000510) #22	lft1 (ENSSTUG00000000478)	cdc42bpab (ENSSTUG00000000403)	fzd3a (ENSSTUG00000000366)	fam49a (ENSSTUG00000000283)	ENSSTUG00000000270	vsnl1a (ENSSTUG00000000268)	sf3b6 (ENSSTUG00000000265)	tdrd6 (ENSSTUG00000000261)	pla2g7 (ENSSTUG00000000250)	glrx5 (ENSSTUG00000000218)	serpina1l (ENSSTUG00000000214)	flrt2 (ENSSTUG00000000208)	rps7 (ENSSTUG00000000181)	rnaseh1 (ENSSTUG00000000173)	ENSSTUG00000000172
Oncorhynchus	ANCESTRAL SPECIES	30	ENSGT00940000155369.A.d.b.d	ENSGT00940000161931.ib	ENSGT00390000007341.a.i	ENSGT01060000248717.a.b.b.b	ENSGT00940000159582.h	ENSGT00390000007686.b.c.a.f	ENSGT01020000230401.a.a.b.a.a.a	ENSGT01030000234620.a.a.a.a.a.a.c.b	ENSGT00940000154482.b.b.a.d.vb.a	ENSGT00940000159694.b	ENSGT00940000157766.b.b.h	ENSGT01060000248799.b	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.a	ENSGT00390000004799.bc.b #16	ENSGT00390000005861.a.d #17	ENSGT00940000156546.`b.a.f #22	ENSGT00390000010056.b.f	ENSGT01030000234517.H.b.j.b	ENSGT00940000156491.a.g.b	ENSGT01060000253595	ENSGT00390000015159.a.b.f	ENSGT01000000216711	ENSGT00940000156513.a.b.d	ENSGT00390000005908.c	ENSGT00940000159049.a	ENSGT00390000005233.b.f	ENSGT00390000001445.d	ENSGT00550000075082.n	ENSGT00940000160877.i	ENSGT00940000158937.b.f	ENSGT00390000014122.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	35	ENSGT00940000164539.l	ENSGT00940000155369.A.d.b.d	ENSGT00940000161931.ib	ENSGT00390000007341.a.i	ENSGT01060000248717.a.b.b.b	ENSGT01060000248717.a.a.b	ENSGT00390000007686.b.c.a.f	ENSGT01020000230401.a.a.b.a.a.a	ENSGT01030000234620.a.a.a.a.a.a.c.b	ENSGT00940000154482.b.b.a.d.vb.a	ENSGT00940000159694.b	ENSGT00940000157766.b.b.h	ENSGT01060000248799.b	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.a	ENSGT00390000005861.a.d #17	ENSGT00940000156546.`b.a.f #22	ENSGT00390000010056.b.f	ENSGT01030000234517.H.b.j.b	ENSGT00940000156491.a.g.b	ENSGT01060000253595	ENSGT00390000015159.a.b.f	ENSGT01000000216711	ENSGT00940000156513.a.b.d	ENSGT00390000005908.c	ENSGT00940000159049.a	ENSGT00390000005233.b.f	ENSGT00390000001445.d	ENSGT00550000075082.n	ENSGT00940000160877.i	ENSGT00940000158937.b.f	ENSGT00390000014122.b.b
Coho salmon	MODERN SPECIES	13	mgat2 (ENSOKIG00005009521)	ENSOKIG00005009531	ENSOKIG00005009557	WDR20 (ENSOKIG00005009606)	hsp90aa1.2 (ENSOKIG00005009675)	ppp2r5cb (ENSOKIG00005010194)	ENSOKIG00005010568	ENSOKIG00005010571	slc25a47a (ENSOKIG00005010582)	slc25a29 (ENSOKIG00005010590)	ENSOKIG00005010605	snap25a (ENSOKIG00005010617)	ENSOKIG00005010622	cnstb (ENSOKIG00005010644) #17	ENSOKIG00005010647	hnrnpub (ENSOKIG00005010739) #22	lft1 (ENSOKIG00005012896)	cdc42bpab (ENSOKIG00005013543)	fzd3a (ENSOKIG00005030817)	ENSOKIG00005030868	CYRIA (ENSOKIG00005030904)	ENSOKIG00005031394	vsnl1a (ENSOKIG00005031403)	SF3B6 (ENSOKIG00005031418)	tdrd6 (ENSOKIG00005031440)	ENSOKIG00005031486	ENSOKIG00005031853	glrx5 (ENSOKIG00005031881)	ENSOKIG00005031894	ENSOKIG00005031909	ENSOKIG00005031924
Chinook salmon	MODERN SPECIES	9	ENSOTSG00005004382	ENSOTSG00005004383	mgat2 (ENSOTSG00005004387)	ENSOTSG00005004388	ENSOTSG00005004391	ENSOTSG00005004392	ENSOTSG00005004394	ENSOTSG00005004395	slc25a47a (ENSOTSG00005004396)	slc25a29 (ENSOTSG00005004399)	ENSOTSG00005004402	snap25a (ENSOTSG00005004405)	sccpdhb (ENSOTSG00005004431) #16	ENSOTSG00005004546	pcdh10a (ENSOTSG00005004548)	hnrnpub (ENSOTSG00005004575) #22	lft1 (ENSOTSG00005006419)	cdc42bpab (ENSOTSG00005006432)	fzd3a (ENSOTSG00005007937)	ENSOTSG00005007942	fam49a (ENSOTSG00005007944)	vsnl1a (ENSOTSG00005008468)	sf3b6 (ENSOTSG00005008469)	tdrd6 (ENSOTSG00005008470)	pla2g7 (ENSOTSG00005008472)	glrx5 (ENSOTSG00005008998)	serpina1l (ENSOTSG00005009000)	ENSOTSG00005009002	WDR20 (ENSOTSG00005009003)	hsp90aa1.2 (ENSOTSG00005009016)	ENSOTSG00005009310
Rainbow trout	MODERN SPECIES	25	ENSOMYG00000002397	hsp90aa1.2 (ENSOMYG00000002842)	ppp2r5cb (ENSOMYG00000004992)	ENSOMYG00000058211	ENSOMYG00000006580	ENSOMYG00000006583	slc25a47a (ENSOMYG00000006624)	slc25a29 (ENSOMYG00000006681)	ENSOMYG00000006718	snap25a (ENSOMYG00000006749)	ENSOMYG00000066679	sccpdhb (ENSOMYG00000006783) #16	cnstb (ENSOMYG00000006803) #17	ENSOMYG00000065325	ENSOMYG00000054677	hnrnpub (ENSOMYG00000007536) #22	lft1 (ENSOMYG00000008171)	cdc42bpab (ENSOMYG00000008663)	fzd3a (ENSOMYG00000008843)	ENSOMYG00000008868	ENSOMYG00000009099	ENSOMYG00000051778	ENSOMYG00000076929	vsnl1a (ENSOMYG00000009695)	pm14 (ENSOMYG00000009718)	tdrd6 (ENSOMYG00000009808)	ENSOMYG00000010097	ENSOMYG00000010512	glrx5 (ENSOMYG00000010522)	antiprot1 (ENSOMYG00000010547)	ENSOMYG00000010609
Huchen	MODERN SPECIES	1491														ENSHHUG00000032756 #20	ENSHHUG00000032760	hnrnpub (ENSHHUG00000032765) #22	lft1 (ENSHHUG00000033101)	cdc42bpab (ENSHHUG00000033122)	fzd3a (ENSHHUG00000036377)	fam49a (ENSHHUG00000036446)	ENSHHUG00000036554
Northern pike	MODERN SPECIES	17	ENSELUG00000011648	ENSELUG00000011656	ENSELUG00000001585	WDR20 (ENSELUG00000011607)	hsp90aa1.2 (ENSELUG00000011559)	ppp2r5cb (ENSELUG00000011533)	DIO3 (ENSELUG00000011418)	slc25a47a (ENSELUG00000011395)	slc25a29 (ENSELUG00000011360)	ENSELUG00000011290	ankef1a (ENSELUG00000011203)	snap25a (ENSELUG00000011186)	sccpdhb (ENSELUG00000000398) #16	cnstb (ENSELUG00000010791) #17	ENSELUG00000010748 #20	hnrnpub (ENSELUG00000010733) #22	lft1 (ENSELUG00000010720)	cdc42bpab (ENSELUG00000010654)	fzd3a (ENSELUG00000010509)	fbxo16 (ENSELUG00000010475)	fam49a (ENSELUG00000010455)	vsnl1a (ENSELUG00000010411)	sf3b6 (ENSELUG00000028115)	ENSELUG00000025572	tdrd6 (ENSELUG00000010350)	pla2g7 (ENSELUG00000010326)	ints9 (ENSELUG00000010313)	glrx5 (ENSELUG00000010281)	serpina1l (ENSELUG00000010257)	flrt2 (ENSELUG00000025094)	allc (ENSELUG00000010210)
Osteoglossiformes	ANCESTRAL SPECIES	126	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860	ENSGT01050000244824.B	ENSGT00940000156618.c.a	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.a.e	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT00390000010056.b.b	ENSGT01030000234517.H.b.a	ENSGT00940000156491.a.b
Asian bonytongue	MODERN SPECIES		HMBOX1 (ENSSFOG00015026281)	KIF13B (ENSSFOG00015001708)	ENSSFOG00015001678	elp3 (ENSSFOG00015001622)	si:ch211-63o20.7 (ENSSFOG00015001614)	pnocb (ENSSFOG00015001572)	paqr8 (ENSSFOG00015001521)	mcm3 (ENSSFOG00015001433)	il17a/f3 (ENSSFOG00015001417)	stmn4 (ENSSFOG00015001386)	EMILIN1 (ENSSFOG00015001373)	ankef1a (ENSSFOG00015001355)	snap25a (ENSSFOG00015001305)	cnstb (ENSSFOG00015001287) #17	KIF26B (ENSSFOG00015001188) #20	hnrnpub (ENSSFOG00015001124) #22	ENSSFOG00015031684	ENSSFOG00015000984	cdc42bpab (ENSSFOG00015000828)	fzd3a (ENSSFOG00015000788)	fbxo16 (ENSSFOG00015000776)	nrbp1 (ENSSFOG00015000718)	esrrga (ENSSFOG00015000691)	si:ch73-21k16.4 (ENSSFOG00015000674)	ENSSFOG00015000663	LPIN1 (ENSSFOG00015000617)	GNPAT (ENSSFOG00015000601)	ENSSFOG00015000597	ITSN2 (ENSSFOG00015000415)	mrpl19 (ENSSFOG00015000393)	ENSSFOG00015029839
P. kingsleyae	MODERN SPECIES	82	KIF13B (ENSPKIG00000021846)	ENSPKIG00000021882	elp3 (ENSPKIG00000021890)	si:ch211-63o20.7 (ENSPKIG00000021912)	pnocb (ENSPKIG00000021933)	znf395b (ENSPKIG00000021950)	paqr8 (ENSPKIG00000021982)	mcm3 (ENSPKIG00000021999)	il17a/f3 (ENSPKIG00000022047)	stmn4 (ENSPKIG00000022059)	EMILIN1 (ENSPKIG00000022077)	ankef1a (ENSPKIG00000022097)	snap25a (ENSPKIG00000022134)	cnstb (ENSPKIG00000022184) #17	KIF26B (ENSPKIG00000022242) #20	hnrnpub (ENSPKIG00000022332) #22	ENSPKIG00000022375	lft1 (ENSPKIG00000022403)	cdc42bpab (ENSPKIG00000022461)	ENSPKIG00000022561	fzd3a (ENSPKIG00000022575)	OTOF (ENSPKIG00000022619)	FNDC1 (ENSPKIG00000022686)	sod2 (ENSPKIG00000022722)	wtap (ENSPKIG00000022748)	wtap (ENSPKIG00000022767)	acat2 (ENSPKIG00000022793)	tcp1 (ENSPKIG00000022823)	PLEKHG1 (ENSPKIG00000022866)	iyd (ENSPKIG00000022903)	ppp1r14c (ENSPKIG00000022914)
Osteoglossocephalai	ANCESTRAL SPECIES	137	ENSGT00940000163104	ENSGT00940000176994	ENSGT00940000178689	ENSGT00390000004799 #16	ENSGT00390000005861.a #17	ENSGT00940000156992.e #20	ENSGT00940000156546.`b.a #22	ENSGT01030000235230	ENSGT00980000199001	ENSGT00390000005861.b #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992.f #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B	ENSGT00390000010056.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000004700.b	ENSGT00940000155605.a.b	ENSGT00940000155605.a.a	ENSGT00940000153881.a	ENSGT00940000165654	ENSGT00940000158456	ENSGT00940000170735	ENSGT00940000153433.B.a.b	ENSGT00410000025698.a
Clupeocephala	ANCESTRAL SPECIES	21	ENSGT01030000234597.a.b.a.a	ENSGT00950000183172.C	ENSGT01030000234633.A.a.a	ENSGT00390000007458	ENSGT00940000156852.c	ENSGT00950000182843.a.a.a.b.a.a.b	ENSGT00390000018900 #15	ENSGT00940000178689	ENSGT01030000235230	ENSGT00980000199001	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992.f #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B	ENSGT00390000010056.a	ENSGT00390000004700.b	ENSGT00940000155605.a.b	ENSGT00940000153881.a	ENSGT00940000165654	ENSGT00940000158456	ENSGT00940000170735	ENSGT00940000153433.B.a.b	ENSGT00390000011270	ENSGT00390000008041.A	ENSGT00940000157219.f	ENSGT00390000017067
Otomorpha	ANCESTRAL SPECIES	48	ENSGT00940000156618.c.b	ENSGT01030000234597.a.b.a.a	ENSGT00950000183172.C	ENSGT01030000234633.A.a.a	ENSGT00390000007458	ENSGT00940000156852.c	ENSGT00950000182843.a.a.a.b.a.a.b	ENSGT00390000018900 #15	ENSGT00940000178689	ENSGT01030000235230	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992.f #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B	ENSGT00390000010056.a	ENSGT01030000234517.H.b.l	ENSGT00940000156491.a.c	ENSGT00390000004700.b	ENSGT00940000153881.a	ENSGT00940000158456	ENSGT00940000153433.B.a.b	ENSGT00390000011270	ENSGT00390000008041.A	ENSGT00940000157219.f	ENSGT00390000017067	ENSGT00940000155936.a.a
Clupeiformes	DUPLICATION
Clupeiformes	ANCESTRAL SPECIES	6	ENSGT00940000155944.f.a	ENSGT00940000157624.b	ENSGT00390000003855.b.e.a	ENSGT00940000157441.e	ENSGT00390000003581	ENSGT00940000158910	ENSGT00950000183147.A.a.g.a	ENSGT00940000157776.c.a	ENSGT00390000008402	ENSGT00940000156829	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992.f #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b.a #22	ENSGT00390000017953.B	ENSGT00390000010056.a	ENSGT01030000234517.H.b.l	ENSGT00940000156491.a.c	ENSGT00390000004700.b	ENSGT00940000153881.a	ENSGT00940000158456	ENSGT00940000153433.B.a.b	ENSGT00390000011270	ENSGT00390000008041.A	ENSGT00940000157219.f	ENSGT00390000017067	ENSGT00940000155936.a.a	ENSGT00390000005861.b #17	ENSGT00390000004799 #16
Atlantic herring	MODERN SPECIES	5	RHOV (ENSCHAG00000019137)	CHAC1 (ENSCHAG00000019129)	DLL4 (ENSCHAG00000018994)	ENSCHAG00000018979	ENSCHAG00000018965	vsx2 (ENSCHAG00000018950)	ENSCHAG00000018908	lin52 (ENSCHAG00000018858)	pomt2 (ENSCHAG00000017895)	tfb2m (ENSCHAG00000017853) #18	ENSCHAG00000017710	smyd3 (ENSCHAG00000017656) #19	KIF26B (ENSCHAG00000017646) #20	ENSCHAG00000017604	EFCAB2 (ENSCHAG00000017495) #21	HNRNPU (ENSCHAG00000015653) #22	ENSCHAG00000015583	lft2 (ENSCHAG00000015578)	ENSCHAG00000015563	ENSCHAG00000011584	fzd3b (ENSCHAG00000011478)	ENSCHAG00000011468	KCTD3 (ENSCHAG00000010109)	USH2A (ENSCHAG00000009254)	esrrga (ENSCHAG00000009230)	spata17 (ENSCHAG00000009222)	ENSCHAG00000008971	pfn4 (ENSCHAG00000008901)	itsn2b (ENSCHAG00000007275)	lpin1a (ENSCHAG00000006633)	ENSCHAG00000006592
Denticle herring	MODERN SPECIES		dpf3 (ENSDCDG00000000127)	RHOV (ENSDCDG00000030529)	CHAC1 (ENSDCDG00000030524)	DLL4 (ENSDCDG00000030505)	zgc:100868 (ENSDCDG00000030504)	ENSDCDG00000030503	RASGRP1 (ENSDCDG00000030500)	ENSDCDG00000030499	vsx2 (ENSDCDG00000030498)	lin52 (ENSDCDG00000030495)	pomt2 (ENSDCDG00000030492)	tfb2m (ENSDCDG00000030489) #18	smyd3 (ENSDCDG00000030488) #19	KIF26B (ENSDCDG00000030485) #20	EFCAB2 (ENSDCDG00000030483) #21	HNRNPU (ENSDCDG00000030462) #22	ENSDCDG00000030460	ENSDCDG00000012723	fzd3b (ENSDCDG00000011655)	KCTD3 (ENSDCDG00000011638)	ENSDCDG00000011608	KCTD3 (ENSDCDG00000011593)	ENSDCDG00000011578	USH2A (ENSDCDG00000011359)	esrrga (ENSDCDG00000011182)	spata17 (ENSDCDG00000011162)	ENSDCDG00000010939	lpin1a (ENSDCDG00000010853)	pfn4 (ENSDCDG00000010834)	itsn2b (ENSDCDG00000005482)	ENSDCDG00000005447 #17
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00940000156546.`b.b.b #22
Atlantic herring	MODERN SPECIES	12	ENSCHAG00000018522	ENSCHAG00000018517	ENSCHAG00000018508	NARS1 (ENSCHAG00000018266)	ENSCHAG00000018174	ENSCHAG00000018152	ENSCHAG00000018124	ENSCHAG00000018115	ENSCHAG00000018107	ENSCHAG00000018080	ENSCHAG00000018060	asns (ENSCHAG00000017770)	ENSCHAG00000017752	tspan18a (ENSCHAG00000017744)	ext2 (ENSCHAG00000017539)	ENSCHAG00000017532 #22	ALX4 (ENSCHAG00000017520)	nucb2a (ENSCHAG00000016986)	ENSCHAG00000016909	E2F4 (ENSCHAG00000016867)	ENSCHAG00000016528	ENSCHAG00000016449	nucb2a (ENSCHAG00000016288)	tmem208 (ENSCHAG00000016264)	E2F4 (ENSCHAG00000016206)	ENSCHAG00000016167	si:ch211-122f10.4 (ENSCHAG00000016098)	slc38a7 (ENSCHAG00000015947)	GCNT3 (ENSCHAG00000015917)	ENSCHAG00000015901	ENSCHAG00000015860
Otophysi	ANCESTRAL SPECIES	21	ENSGT00940000156618.c.b	ENSGT01030000234597.a.b.a.a	ENSGT00950000183172.C	ENSGT01030000234633.A.a.a	ENSGT00390000007458	ENSGT00940000156852.c	ENSGT00950000182843.a.a.a.b.a.a.b	ENSGT00390000018900 #15	ENSGT00940000178689	ENSGT00390000005861.b #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992.f #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B	ENSGT00550000074912	ENSGT00940000156159	ENSGT00940000160102	ENSGT00940000162596	ENSGT00390000012397	ENSGT00950000183181.B.a	ENSGT00940000165169.b.a	ENSGT00530000064222.b	ENSGT00390000011854	ENSGT00940000159561	ENSGT00900000141196	ENSGT00940000164564.f.a	ENSGT01030000234534.A.d	ENSGT00940000156269.a.a
Cyprinoidei	ANCESTRAL SPECIES	24	ENSGT00940000156618.c.b	ENSGT01030000234597.a.b.a.a	ENSGT00940000156618.d.a	ENSGT00950000183172.C	ENSGT01030000234633.A.a.a	ENSGT00390000007458	ENSGT00940000156852.c	ENSGT00950000182843.a.a.a.b.a.a.b	ENSGT00390000018900 #15	ENSGT00390000005861.b #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992.f #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B	ENSGT00550000074912	ENSGT00940000156159	ENSGT00940000160102	ENSGT00940000162596	ENSGT00390000012397	ENSGT00950000183181.B.a	ENSGT00940000165169.b.a	ENSGT00530000064222.b	ENSGT00390000011854	ENSGT00940000159561	ENSGT00900000141196	ENSGT00940000164564.f.a	ENSGT01030000234534.A.d	ENSGT00940000156269.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	42	ENSGT00950000182843.a.a.a.b.a.a.b.a	ENSGT00940000156852.c.d	ENSGT00390000007458.f	ENSGT00950000183142.a.b.a.b.a #18	ENSGT00940000156766.b #19	ENSGT00940000156992.f.b #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b.d #22	ENSGT00390000017953.B.b	ENSGT00550000074912.fb.b	ENSGT00940000156159.i.b	ENSGT00940000160102.h	ENSGT00940000162596	ENSGT00940000167557.a	ENSGT00940000156546.`b.b.c #22	ENSGT00390000017953.B.a	ENSGT00550000074912.gb	ENSGT00960000186989	ENSGT00550000074912.fb.a	ENSGT00940000156159.i.a	ENSGT00940000160102.g	ENSGT00390000012397.c	ENSGT00950000183181.B.a.a	ENSGT00940000165169.b.a.i	ENSGT00530000064222.b.h	ENSGT00390000011854.i	ENSGT00940000159561.o	ENSGT00900000141196.e	ENSGT00940000164564.f.a.m	ENSGT01030000234534.A.d.a
Cyprininae_a	ANCESTRAL SPECIES	108	ENSGT01030000235144.a	ENSGT00940000156618.c.b.a	ENSGT01030000234597.a.b.a.a.b	ENSGT00950000183172.C.r.b	ENSGT01030000234633.A.a.a.a	ENSGT00390000007458.f	ENSGT00940000156852.c.d	ENSGT00950000182843.a.a.a.b.a.a.b.a	ENSGT00390000018900.p #15	ENSGT00390000004799.m.b #16	ENSGT00390000005861.b.a #17	ENSGT00950000183142.a.b.a.b.a #18	ENSGT00940000156766.b #19	ENSGT00940000156992.f.b #20	ENSGT00940000167557.a	ENSGT00940000156546.`b.b.c #22	ENSGT00390000017953.B.a	ENSGT00960000186989	ENSGT00550000074912.fb.a	ENSGT00940000156159.i.a	ENSGT00940000160102.g	ENSGT00390000012397.c	ENSGT00950000183181.B.a.a	ENSGT00940000165169.b.a.i	ENSGT00530000064222.b.h	ENSGT00390000011854.i	ENSGT00940000159561.o	ENSGT00900000141196.e	ENSGT00940000164564.f.a.m	ENSGT01030000234534.A.d.a	ENSGT00940000156269.a.a.b
Golden-line barbel	MODERN SPECIES	83	lrrc57 (ENSSGRG00000049930)	il17a/f2 (ENSSGRG00000049929)	il17a/f1 (ENSSGRG00000049928)	stmn4l (ENSSGRG00000049927)	gpn1 (ENSSGRG00000049926)	ENSSGRG00000049925	ANKEF1 (ENSSGRG00000049924)	khk (ENSSGRG00000049885)	snap25b (ENSSGRG00000049918)	ENSSGRG00000049880 #15	ENSSGRG00000049871 #17	tfb2m (ENSSGRG00000049868) #18	smyd3 (ENSSGRG00000049867) #19	KIF26B (ENSSGRG00000049866) #20	ENSSGRG00000049865	HNRNPU (ENSSGRG00000049864) #22	ENSSGRG00000049861	ENSSGRG00000049860	psma3 (ENSSGRG00000049859)	arid4a (ENSSGRG00000049661)	timm9 (ENSSGRG00000049660)	si:ch211-185a18.2 (ENSSGRG00000049659)	dact1 (ENSSGRG00000049658)	lgals3b (ENSSGRG00000049657)	fbxo34 (ENSSGRG00000049656)	atg14 (ENSSGRG00000049655)	tbpl2 (ENSSGRG00000049654)	jmjd7 (ENSSGRG00000049645)	ENSSGRG00000049428	ENSSGRG00000049416	ENSSGRG00000049415
Common carp reference	MODERN SPECIES	30	il17a/f1 (ENSCCRG00000062947)	gpn1 (ENSCCRG00000014219)	ENSCCRG00000014226	ENSCCRG00000044566	khk (ENSCCRG00000074666)	ENSCCRG00000044373	snap25b (ENSCCRG00000047191)	AHCTF1 (ENSCCRG00000044305) #15	ENSCCRG00000044285 #16	CNST (ENSCCRG00000044276) #17	tfb2m (ENSCCRG00000078417) #18	smyd3 (ENSCCRG00000025134) #19	ENSCCRG00000074040	ENSCCRG00000049252 #20	efcab2 (ENSCCRG00000036667)	HNRNPU (ENSCCRG00000036677) #22	ENSCCRG00000065468	psma3 (ENSCCRG00000080020)	arid4a (ENSCCRG00000036734)	si:ch211-185a18.2 (ENSCCRG00000007673)	dact1 (ENSCCRG00000059032)	lgals3b (ENSCCRG00000007665)	fbxo34 (ENSCCRG00000030945)	atg14 (ENSCCRG00000007656)	jmjd7 (ENSCCRG00000007639)	ENSCCRG00000003163	ENSCCRG00000030069	mgaa (ENSCCRG00000030063)	tyro3 (ENSCCRG00000013786)	mipol1 (ENSCCRG00000082052)	foxa1 (ENSCCRG00000061117)
Goldfish	MODERN SPECIES	8	ENSCARG00000005298	khk (ENSCARG00000005323)	ANKEF1 (ENSCARG00000005343)	snap25b (ENSCARG00000005353)	tfb2m (ENSCARG00000005370) #18	ENSCARG00000005391 #17	SCCPDH (ENSCARG00000005438) #16	AHCTF1 (ENSCARG00000006120) #15	snap25b (ENSCARG00000007305)	ANKEF1 (ENSCARG00000007323)	khk (ENSCARG00000007352)	tfb2m (ENSCARG00000007437) #18	smyd3 (ENSCARG00000007465) #19	KIF26B (ENSCARG00000007505) #20	efcab2 (ENSCARG00000007617)	HNRNPU (ENSCARG00000007662) #22	ENSCARG00000009064	psma3 (ENSCARG00000009077)	arid4a (ENSCARG00000009115)	timm9 (ENSCARG00000029674)	si:ch211-185a18.2 (ENSCARG00000029720)	dact1 (ENSCARG00000029790)	lgals3b (ENSCARG00000029803)	fbxo34 (ENSCARG00000029821)	atg14 (ENSCARG00000029842)	tbpl2 (ENSCARG00000029870)	jmjd7 (ENSCARG00000029886)	ENSCARG00000030075	ENSCARG00000032988	mgaa (ENSCARG00000033014)	tyro3 (ENSCARG00000033161)
Cyprininae	ANCESTRAL SPECIES	42					ENSGT00390000005861.b.a #17	ENSGT00390000004799.m.b #16	ENSGT00390000018900.p #15	ENSGT00950000182843.a.a.a.b.a.a.b.a	ENSGT00940000156852.c.d	ENSGT00390000007458.f	ENSGT00950000183142.a.b.a.b.a #18	ENSGT00940000156766.b #19	ENSGT00940000156992.f.b #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b.d #22	ENSGT00390000017953.B.b	ENSGT00550000074912.fb.b	ENSGT00940000156159.i.b	ENSGT00940000160102.h	ENSGT00940000162596	ENSGT00940000167557.a	ENSGT00940000156546.`b.b.c #22	ENSGT00390000017953.B.a	ENSGT00550000074912.gb	ENSGT00960000186989	ENSGT00550000074912.fb.a	ENSGT00940000156159.i.a	ENSGT00940000160102.g	ENSGT00390000012397.c	ENSGT00950000183181.B.a.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	36	ENSCARG00000069675	clec14a (ENSCARG00000069678)	SSTR1 (ENSCARG00000069679)	foxa1 (ENSCARG00000069685)	mipol1 (ENSCARG00000069688)	tyro3 (ENSCARG00000069752)	mgaa (ENSCARG00000069844)	ENSCARG00000069858	ENSCARG00000069897	atg14 (ENSCARG00000069911)	fbxo34 (ENSCARG00000069913)	lgals3b (ENSCARG00000069917)	dact1 (ENSCARG00000069922)	ENSCARG00000069924	efcab2 (ENSCARG00000069925)	HNRNPU (ENSCARG00000053485) #22	ENSCARG00000054171	ENSCARG00000054175	psma3 (ENSCARG00000054212)	arid4a (ENSCARG00000054334)	timm9 (ENSCARG00000054459)	ENSCARG00000054488	ENSCARG00000054496	dact1 (ENSCARG00000054507)	SCCPDH (ENSCARG00000054531) #16	ENSCARG00000054644 #17	ENSCARG00000054665	il17a/f1 (ENSCARG00000054706)	stmn4l (ENSCARG00000054717)	gpn1 (ENSCARG00000054743)	ENSCARG00000054796
Goldfish	MODERN SPECIES	36	fzd3b (ENSCARG00000043671)	ENSCARG00000043701	ctbp2a (ENSCARG00000043816)	EDRF1 (ENSCARG00000044779)	tonsl (ENSCARG00000044851)	ENSCARG00000045266	ENSCARG00000045319	ENSCARG00000045398	ENSCARG00000045411	nkl.2 (ENSCARG00000045430)	zranb1b (ENSCARG00000045457)	AKAP6 (ENSCARG00000045574)	hao1 (ENSCARG00000046129)	tmx4 (ENSCARG00000046176)	efcab2 (ENSCARG00000046217)	HNRNPU (ENSCARG00000046309) #22	ENSCARG00000047219	psma3 (ENSCARG00000047256)	ENSCARG00000047354	fzd3b (ENSCARG00000047557)	ENSCARG00000047587	ctbp2a (ENSCARG00000047656)	EDRF1 (ENSCARG00000048779)	tonsl (ENSCARG00000049958)	ENSCARG00000050339	nkl.2 (ENSCARG00000050424)	zranb1b (ENSCARG00000050435)	clec14a (ENSCARG00000050488)	SSTR1 (ENSCARG00000050498)	foxa1 (ENSCARG00000050517)	gpn1 (ENSCARG00000050537)
Cyprininae_a	ANCESTRAL SPECIES	24	ENSGT01030000234597.a.b.a.a.a	ENSGT00950000183172.C.r.a	ENSGT01030000234633.A.a.a.b	ENSGT00390000007458.e	ENSGT00940000156852.c.c	ENSGT00950000182843.a.a.a.b.a.a.b.b	ENSGT00390000018900.o #15	ENSGT00940000163104	ENSGT00390000004799.m.a #16	ENSGT00390000005861.b.b #17	ENSGT00950000183142.a.b.a.b.b #18	ENSGT00940000156766.a #19	ENSGT00940000156992.f.a #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b.d #22	ENSGT00390000017953.B.b	ENSGT00550000074912.gb	ENSGT00940000156159.i.b	ENSGT00940000165313	ENSGT00950000183519	ENSGT00390000012397.d	ENSGT00950000183181.B.a.b	ENSGT00940000165169.b.a.j	ENSGT00530000064222.b.g	ENSGT00390000011854.j	ENSGT00940000159561.p	ENSGT00900000141196.f	ENSGT00940000164564.f.a.n	ENSGT00940000156269.a.a.a	ENSGT00940000155879.j
Common carp reference	MODERN SPECIES	4	il17a/f1 (ENSCCRG00000075685)	stmn4l (ENSCCRG00000058438)	gpn1 (ENSCCRG00000068589)	ENSCCRG00000057378	ENSCCRG00000047166	khk (ENSCCRG00000074147)	ENSCCRG00000047176	snap25b (ENSCCRG00000074511)	AHCTF1 (ENSCCRG00000048977) #15	ENSCCRG00000049777	ENSCCRG00000049778 #16	ENSCCRG00000049781 #17	tfb2m (ENSCCRG00000044274) #18	smyd3 (ENSCCRG00000021325) #19	ENSCCRG00000049239 #20	HNRNPU (ENSCCRG00000049268) #22	ENSCCRG00000069324	psma3 (ENSCCRG00000049361)	arid4a (ENSCCRG00000003569)	ENSCCRG00000068629	dact1 (ENSCCRG00000001724)	lgals3b (ENSCCRG00000054293)	fbxo34 (ENSCCRG00000007660)	atg14 (ENSCCRG00000001580)	tbpl2 (ENSCCRG00000063315)	jmjd7 (ENSCCRG00000044105)	ENSCCRG00000043814	mgaa (ENSCCRG00000043749)	tyro3 (ENSCCRG00000043724)	foxa1 (ENSCCRG00000013804)	mipol1 (ENSCCRG00000072458)
Golden-line barbel	MODERN SPECIES	117	lrrc57 (ENSSGRG00000032163)	il17a/f2 (ENSSGRG00000032158)	il17a/f1 (ENSSGRG00000032155)	stmn4l (ENSSGRG00000032154)	gpn1 (ENSSGRG00000032150)	ENSSGRG00000032147	khk (ENSSGRG00000032144)	snap25b (ENSSGRG00000032143)	AHCTF1 (ENSSGRG00000032084) #15	sccpdha.1 (ENSSGRG00000032004) #16	tfb2m (ENSSGRG00000032003) #18	smyd3 (ENSSGRG00000032002) #19	KIF26B (ENSSGRG00000031999) #20	ENSSGRG00000031998	EFCAB2 (ENSSGRG00000031997) #21	HNRNPU (ENSSGRG00000031994) #22	ENSSGRG00000031993	psma3 (ENSSGRG00000031990)	arid4a (ENSSGRG00000031985)	ENSSGRG00000031982	si:ch211-185a18.2 (ENSSGRG00000031979)	dact1 (ENSSGRG00000031976)	lgals3b (ENSSGRG00000031973)	fbxo34 (ENSSGRG00000031969)	atg14 (ENSSGRG00000031967)	tbpl2 (ENSSGRG00000031965)	ENSSGRG00000031960	ENSSGRG00000031958	mgaa (ENSSGRG00000031957)	tyro3 (ENSSGRG00000031945)	vim (ENSSGRG00000031944)
Zebrafish	MODERN SPECIES	8	ENSDARG00000112941	ENSDARG00000111806	ENSDARG00000110216	ENSDARG00000097940	AHCTF1 (ENSDARG00000077530) #15	ENSDARG00000076687	ENSDARG00000091585	sccpdha.1 (ENSDARG00000075766) #16	sccpdha.2 (ENSDARG00000075053) #16	ENSDARG00000086283 #17	tfb2m (ENSDARG00000074756) #18	ENSDARG00000114403	smyd3 (ENSDARG00000058050) #19	KIF26B (ENSDARG00000013343) #20	efcab2 (ENSDARG00000074323)	HNRNPU (ENSDARG00000015206) #22	ENSDARG00000062785	psma3 (ENSDARG00000086618)	arid4a (ENSDARG00000043873)	timm9 (ENSDARG00000043865)	irf2bpl (ENSDARG00000004297)	ENSDARG00000096963	si:ch211-185a18.2 (ENSDARG00000097772)	dact1 (ENSDARG00000101635)	lgals3b (ENSDARG00000044001)	ENSDARG00000077035	fbxo34 (ENSDARG00000071259)	atg14 (ENSDARG00000002670)	tbpl2 (ENSDARG00000097302)	jmjd7 (ENSDARG00000035546)	ENSDARG00000103746
Euteleosteomorpha	ANCESTRAL SPECIES	239	ENSGT00940000153881.a	ENSGT00940000158456	ENSGT00940000170735	ENSGT00940000153433.B.a.b	ENSGT00390000011270	ENSGT00390000008041.A	ENSGT00940000157219.f	ENSGT00940000178689	ENSGT00390000018900 #15	ENSGT00950000183142.a.b.a.b #18	ENSGT00390000005861.b #17	ENSGT00940000156766 #19	ENSGT00940000156992.f #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B	ENSGT00390000010056.a
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000156546.`b.b #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000156546.`b.b #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000156546.`b.b #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000156546.`b.b #22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000156546.`b.b #22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000156546.`b.b #22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00940000156546.`b.b #22
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00940000156546.`b.b #22
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00940000156546.`b.b #22
Poecilia	ANCESTRAL SPECIES																	ENSGT00940000156546.`b.b #22
Guppy	MODERN SPECIES	363																ENSPREG00000006616 #22
Protacanthopterygii	ANCESTRAL SPECIES	72	ENSGT00940000170735	ENSGT00940000165654	ENSGT00940000158456	ENSGT00940000153433.B.a.b	ENSGT00390000011270	ENSGT00390000008041.A	ENSGT00940000157219.f	ENSGT00940000163104	ENSGT00390000018900 #15	ENSGT00950000183142.a.b.a.b #18	ENSGT00390000005861.b #17	ENSGT00980000199001	ENSGT00940000156766 #19	ENSGT00940000156992.f #20	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B	ENSGT00390000010056.a	ENSGT00940000154928.c.a.a	ENSGT00940000155500.e	ENSGT00950000183149.C.a	ENSGT00940000157136.a	ENSGT00940000155982.e.a	ENSGT00940000157612	ENSGT01090000260040.b.b.b.a.m.a.a	ENSGT00940000155443.c	ENSGT00390000008069	ENSGT00390000003990	ENSGT00940000155623	ENSGT01030000234564.a.a.a.a.b.a	ENSGT00940000156714.a
Salmoninae	ANCESTRAL SPECIES	487	ENSGT00940000155605.a.b.b	ENSGT00940000153881.a.f	ENSGT00940000165654	ENSGT00940000158456	ENSGT00940000153433.B.a.b.h	ENSGT00390000008041.A.d	ENSGT00940000157219.f.d	ENSGT00940000162556.G.d.g.a.a	ENSGT01090000260226.d.b	ENSGT00390000018900.q #15	ENSGT00390000004799.cc.a #16	ENSGT00950000183142.a.b.a.b #18	ENSGT00390000005861.b.d #17	ENSGT00940000156992.f.d #20	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B.c
Huchen	MODERN SPECIES	2866														ENSHHUG00000023877	ENSHHUG00000023881	HNRNPU (ENSHHUG00000023887) #22	ENSHHUG00000023934	ENSHHUG00000023940
Salmoninae_a	ANCESTRAL SPECIES	180												ENSGT00940000165019.f	ENSGT00940000175771	ENSGT00940000156992.f.d #20	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B.c	ENSGT00940000154928.c.a.a.d	ENSGT00940000155500.e.c	ENSGT00950000183149.C.a.d	ENSGT00940000157136.a.d	ENSGT00940000155982.e.a.c	ENSGT00940000157612.a.b	ENSGT00940000162556.G.d.g.a.b.a
Salmo	ANCESTRAL SPECIES	8	ENSGT00940000156207.b.c.a.b.a.b	ENSGT00940000156491.b.a	ENSGT00390000004700.b.e	ENSGT00940000155605.a.b.b	ENSGT00940000153881.a.f	ENSGT00940000158456	ENSGT00940000153433.B.a.b.h	ENSGT00390000008041.A.d	ENSGT00940000157219.f.d	ENSGT00390000018900.q #15	ENSGT00390000004799.cc.a #16	ENSGT00950000183142.a.b.a.b #18	ENSGT00390000005861.b.d #17	ENSGT00940000165019.f	ENSGT00940000175771	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B.c	ENSGT00940000154928.c.a.a.d	ENSGT00940000155500.e.c	ENSGT00950000183149.C.a.d	ENSGT00940000157136.a.d	ENSGT00940000155982.e.a.c	ENSGT00940000157612.a.b	ENSGT00940000162556.G.d.g.a.b.a	ENSGT01090000260226.d.b	ENSGT00940000162556.G.d.g.a.a	ENSGT01090000260040.b.b.b.a.m.a.a.d	ENSGT00940000155443.c.d	ENSGT00940000155623.ib.a.b	ENSGT01030000234564.a.a.a.a.b.a.a	ENSGT00940000156714.a.d
Atlantic salmon	MODERN SPECIES		ENSSSAG00000112355	esrrga (ENSSSAG00000118635)	ENSSSAG00000055500	lpin1a (ENSSSAG00000055167)	ENSSSAG00000097032	ENSSSAG00000055740	ENSSSAG00000055120	ahctf1 (ENSSSAG00000054720) #15	ENSSSAG00000108458	ENSSSAG00000054523 #16	TFB2M (ENSSSAG00000054498) #18	ENSSSAG00000054485 #17	ENSSSAG00000088170	KIF26B (ENSSSAG00000113358) #20	efcab2 (ENSSSAG00000103211) #21	HNRNPU (ENSSSAG00000054124) #22	ENSSSAG00000090710	hmbox1a (ENSSSAG00000054074)	ENSSSAG00000040186	ENSSSAG00000039798	znf395a (ENSSSAG00000039783)	KLF11 (ENSSSAG00000039768)	grhl1 (ENSSSAG00000034849)	ENSSSAG00000034349	ENSSSAG00000034115	ENSSSAG00000063122	ENSSSAG00000063098	ADAM17 (ENSSSAG00000057740)	asap2a (ENSSSAG00000056052)	ENSSSAG00000095688	ENSSSAG00000090250
River trout	MODERN SPECIES	26	ENSSTUG00000047656	ENSSTUG00000047659	ENSSTUG00000047665	NRBP1 (ENSSTUG00000047686)	KCTD3 (ENSSTUG00000047941)	ENSSTUG00000048128	esrrga (ENSSTUG00000048249)	ENSSTUG00000048268	lpin1a (ENSSTUG00000048394)	ENSSTUG00000048492 #15	SCCPDH (ENSSTUG00000048720) #16	tfb2m (ENSSTUG00000048803) #18	ENSSTUG00000048818 #17	ENSSTUG00000048824	ENSSTUG00000048831	HNRNPU (ENSSTUG00000048840) #22	ENSSTUG00000048859	hmbox1a (ENSSTUG00000048864)	KIF13B (ENSSTUG00000048950)	ENSSTUG00000049816	ENSSTUG00000049817	znf395a (ENSSTUG00000049819)	klf11b (ENSSTUG00000049822)	grhl1 (ENSSTUG00000049825)	ENSSTUG00000049834	ENSSTUG00000049839	ENSSTUG00000049843	ywhaqb (ENSSTUG00000049851)	ADAM17 (ENSSTUG00000049899)	asap2a (ENSSTUG00000050299)	MBOAT2 (ENSSTUG00000050617)
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00600000084860.D.b	ENSGT00940000156207.b.c.a.b.a.b	ENSGT00940000156491.b.a	ENSGT00390000004700.b.e	ENSGT00940000155605.a.b.b	ENSGT00940000153881.a.f	ENSGT00940000158456	ENSGT00390000008041.A.d	ENSGT00940000157219.f.d	ENSGT00390000018900.q #15	ENSGT00390000004799.cc.a #16	ENSGT00950000183142.a.b.a.b #18	ENSGT01030000235230	ENSGT00940000156992.f.d #20	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B.c	ENSGT00940000154928.c.a.a.d	ENSGT00940000155500.e.c	ENSGT00950000183149.C.a.d	ENSGT00940000157136.a.d	ENSGT00940000155982.e.a.c	ENSGT00940000157612.a.b	ENSGT01090000260226.c	ENSGT00940000162556.G.d.g.a.a	ENSGT01090000260040.b.b.b.a.m.a.a.d	ENSGT00940000155443.c.d	ENSGT00940000155623.ib.a.b	ENSGT01030000234564.a.a.a.a.b.a.a	ENSGT00940000156714.a.d	ENSGT00940000156464.mb.b.b
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000049509	ENSOMYG00000053111	ENSOMYG00000035849	ENSOMYG00000008144	ENSOMYG00000077475	ENSOMYG00000055586	ENSOMYG00000053130	ENSOMYG00000015297	ENSOMYG00000015454 #15	ENSOMYG00000015570 #16	TFB2M (ENSOMYG00000015693) #18	ENSOMYG00000015709	KIF26B (ENSOMYG00000015716) #20	ENSOMYG00000057032	EFCAB2 (ENSOMYG00000015726) #21	HNRNPU (ENSOMYG00000015805) #22	ENSOMYG00000016769	hmbox1a (ENSOMYG00000016816)	ENSOMYG00000017174	ENSOMYG00000058203	ENSOMYG00000022544	znf395a (ENSOMYG00000022552)	ENSOMYG00000022560	grhl1 (ENSOMYG00000022596)	ENSOMYG00000022623	ENSOMYG00000022631	ywhaqb (ENSOMYG00000075163)	ENSOMYG00000023286	asap2a (ENSOMYG00000026896)	ENSOMYG00000053686	MBOAT2 (ENSOMYG00000027631)
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00600000084860.D.b	ENSGT00940000156491.b.a	ENSGT00390000004700.b.e	ENSGT00940000155605.a.b.b	ENSGT00940000153881.a.f	ENSGT00940000158456	ENSGT00390000008041.A.d	ENSGT00940000157219.f.d	ENSGT00390000018900.q #15	ENSGT00390000004799.cc.a #16	ENSGT00950000183142.a.b.a.b #18	ENSGT01030000235230	ENSGT00390000004799.bc.b #16	ENSGT00940000156992.f.d #20	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B.c	ENSGT00940000154928.c.a.a.d	ENSGT00940000155500.e.c	ENSGT00950000183149.C.a.d	ENSGT00940000157136.a.d	ENSGT00940000155982.e.a.c	ENSGT00940000157612.a.b	ENSGT01090000260226.c	ENSGT00940000162556.G.d.g.a.a	ENSGT01090000260040.b.b.b.a.m.a.a.d	ENSGT00940000155443.c.d	ENSGT00940000155623.ib.a.b	ENSGT01030000234564.a.a.a.a.b.a.a	ENSGT01100000264750	ENSGT00940000156714.a.d
Coho salmon	MODERN SPECIES	27	ENSOKIG00005012288	ENSOKIG00005012398	ENSOKIG00005012401	NRBP1 (ENSOKIG00005012441)	ENSOKIG00005012950	ENSOKIG00005012990	ENSOKIG00005013315	ENSOKIG00005013347	lpin1a (ENSOKIG00005013552)	ENSOKIG00005013824 #15	SCCPDH (ENSOKIG00005015044) #16	tfb2m (ENSOKIG00005015587) #18	ENSOKIG00005015602	KIF26B (ENSOKIG00005015606) #20	EFCAB2 (ENSOKIG00005015622) #21	HNRNPU (ENSOKIG00005015641) #22	ENSOKIG00005015768	hmbox1a (ENSOKIG00005015782)	KIF13B (ENSOKIG00005016100)	ENSOKIG00005023034	znf395a (ENSOKIG00005023042)	klf11b (ENSOKIG00005023054)	grhl1 (ENSOKIG00005023069)	ENSOKIG00005023102	ENSOKIG00005023141	ywhaqb (ENSOKIG00005023149)	ADAM17 (ENSOKIG00005023340)	asap2a (ENSOKIG00005025976)	ENSOKIG00005026449	MBOAT2 (ENSOKIG00005026470)	ENSOKIG00005026591
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2966	ADAM17 (ENSOTSG00005043283)	ywhaqb (ENSOTSG00005043272)	ENSOTSG00005043269	ENSOTSG00005043264	grhl1 (ENSOTSG00005043263)	klf11b (ENSOTSG00005043262)	znf395a (ENSOTSG00005043261)	ENSOTSG00005043260	KIF13B (ENSOTSG00005036402)	hmbox1a (ENSOTSG00005036391)	ENSOTSG00005036389	HNRNPU (ENSOTSG00005036388) #22	EFCAB2 (ENSOTSG00005036387) #21	ENSOTSG00005036385	EFCAB2 (ENSOTSG00005036384) #21	HNRNPU (ENSOTSG00005036382) #22	ENSOTSG00005036381	hmbox1a (ENSOTSG00005036380)	KIF13B (ENSOTSG00005033431)
Chinook salmon	MODERN SPECIES	2966									KIF13B (ENSOTSG00005033431)	hmbox1a (ENSOTSG00005036380)	ENSOTSG00005036381	HNRNPU (ENSOTSG00005036382) #22	EFCAB2 (ENSOTSG00005036384) #21	ENSOTSG00005036385	EFCAB2 (ENSOTSG00005036387) #21	HNRNPU (ENSOTSG00005036388) #22	ENSOTSG00005036389	hmbox1a (ENSOTSG00005036391)	KIF13B (ENSOTSG00005036402)	ENSOTSG00005043260	znf395a (ENSOTSG00005043261)	klf11b (ENSOTSG00005043262)	grhl1 (ENSOTSG00005043263)	ENSOTSG00005043264	ENSOTSG00005043269	ywhaqb (ENSOTSG00005043272)	ADAM17 (ENSOTSG00005043283)
Northern pike	MODERN SPECIES	14											ENSELUG00000031203	smyd3 (ENSELUG00000019343) #19	ENSELUG00000032455	KIF26B (ENSELUG00000019398) #20	EFCAB2 (ENSELUG00000001169) #21	HNRNPU (ENSELUG00000011966) #22	ENSELUG00000012002	ENSELUG00000012028	hmbox1a (ENSELUG00000012058)	KIF13B (ENSELUG00000012362)	ENSELUG00000012441	znf395a (ENSELUG00000012502)	klf11b (ENSELUG00000012527)	grhl1 (ENSELUG00000012598)	ywhaqb (ENSELUG00000012647)	adam17a (ENSELUG00000012677)	iah1 (ENSELUG00000012701)	itgb1bp1 (ENSELUG00000024673)	asap2a (ENSELUG00000012839)	ENSELUG00000032565	ENSELUG00000032775
Osteoglossiformes	ANCESTRAL SPECIES	4	ENSGT00940000156618.c.b	ENSGT01030000234597.a.b.a.a	ENSGT00950000183172.C	ENSGT01030000234633.A.a.a.f	ENSGT00390000007458	ENSGT00390000018900 #15	ENSGT00940000163104	ENSGT00940000176994	ENSGT00390000004799 #16	ENSGT00390000005861.b #17	ENSGT00950000183142.a.b.a.b #18	ENSGT00940000156766 #19	ENSGT00940000156992.f #20	ENSGT00940000165019	ENSGT00940000160590 #21	ENSGT00940000156546.`b.b #22	ENSGT00390000017953.B	ENSGT00390000010056.a	ENSGT00390000010056.b.a	ENSGT01030000234517.H.b.b	ENSGT00940000156491.a.a	ENSGT00390000004700.b	ENSGT00940000155605.a.a.b	ENSGT00940000153881.a	ENSGT00940000158456	ENSGT00940000170735	ENSGT00940000153433.B.a.b	ENSGT00410000025698.a	ENSGT00390000008041.B.j	ENSGT00940000157219.e	ENSGT00520000055570.B.l
Asian bonytongue	MODERN SPECIES	6	il17a/f1 (ENSSFOG00015019479)	stmn4l (ENSSFOG00015019466)	gpn1 (ENSSFOG00015019441)	ENSSFOG00015019426	khk (ENSSFOG00015019381)	snap25b (ENSSFOG00015019346)	AHCTF1 (ENSSFOG00015019216) #15	ENSSFOG00015019185	sccpdha.1 (ENSSFOG00015019145) #16	ENSSFOG00015019136 #17	tfb2m (ENSSFOG00015019121) #18	tfb2m (ENSSFOG00015019107) #18	smyd3 (ENSSFOG00015027818) #19	KIF26B (ENSSFOG00015019068) #20	efcab2 (ENSSFOG00015026474)	HNRNPU (ENSSFOG00015019004) #22	ENSSFOG00015018981	lft1 (ENSSFOG00015018966)	cdc42bpab (ENSSFOG00015018896)	fzd3a (ENSSFOG00015018866)	KRTCAP3 (ENSSFOG00015018828)	nrbp1 (ENSSFOG00015018795)	KCTD3 (ENSSFOG00015018701)	USH2A (ENSSFOG00015018545)	esrrga (ENSSFOG00015018472)	spata17 (ENSSFOG00015018438)	ENSSFOG00015018391	lpin1a (ENSSFOG00015018301)	ITSN2 (ENSSFOG00015018180)	gcfc2 (ENSSFOG00015018151)	ENSSFOG00015025221
P. kingsleyae	MODERN SPECIES	333	stmn4l (ENSPKIG00000007521)	gpn1 (ENSPKIG00000007460)	EMILIN1 (ENSPKIG00000007414)	khk (ENSPKIG00000007365)	snap25b (ENSPKIG00000007301)	AHCTF1 (ENSPKIG00000007223) #15	ENSPKIG00000007191	ENSPKIG00000007167	sccpdha.1 (ENSPKIG00000007129) #16	ENSPKIG00000007104 #17	tfb2m (ENSPKIG00000007071) #18	smyd3 (ENSPKIG00000007049) #19	KIF26B (ENSPKIG00000006990) #20	ENSPKIG00000006949	EFCAB2 (ENSPKIG00000006927) #21	HNRNPU (ENSPKIG00000006885) #22	ENSPKIG00000006849	lft1 (ENSPKIG00000006839)	cdc42bpab (ENSPKIG00000006313)
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000156546.ab #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000156546.ab #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000156546.ab #22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000156546.ab #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000156546.ab #22
Salmoninae_a	ANCESTRAL SPECIES	12	ENSGT00390000016048	ENSGT00950000182944.A.a.d	ENSGT00390000015701.a	ENSGT00650000094922.c.b	ENSGT00940000164481.b.b	ENSGT00390000016213.i	ENSGT00940000157181.d	ENSGT01100000263497.D.g	ENSGT00390000014835	ENSGT00940000175063	ENSGT00940000159256.o	ENSGT00940000158431.a.a.a.a.b.a.c.b.b	ENSGT00390000005826.a.a.u.b	ENSGT00500000044869.a.b.n	ENSGT00390000017045	ENSGT00940000156546.ab #22	ENSGT00440000037341.b.b	ENSGT00940000155312.b.f	ENSGT00940000155288.b.pd.a.b	ENSGT00940000160232.k.b	ENSGT01080000258246	ENSGT00940000161428.b	ENSGT00940000160457.a.c	ENSGT00940000168097.b	ENSGT00510000046499.q	ENSGT00870000136506.qc.b	ENSGT00940000164851.a.e	ENSGT00940000159906.e.f	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b.h	ENSGT01100000263599
Oncorhynchus	ANCESTRAL SPECIES	18	ENSGT00940000163239.h	ENSGT00390000016048	ENSGT00950000182944.A.a.d	ENSGT00650000094922.c.b	ENSGT00940000164481.b.b	ENSGT00390000016213.i	ENSGT00940000157181.d	ENSGT01100000263497.D.g	ENSGT00390000014835	ENSGT00940000175063	ENSGT00940000159256.o	ENSGT00940000158431.a.a.a.a.b.a.c.b.b	ENSGT00390000005826.a.a.u.b	ENSGT00500000044869.a.b.n	ENSGT00390000017045	ENSGT00940000156546.ab #22	ENSGT00440000037341.b.b	ENSGT00940000155312.b.f	ENSGT00940000155288.b.pd.a.b	ENSGT00940000160232.k.b	ENSGT01080000258246	ENSGT00940000161428.b	ENSGT00940000160457.a.c	ENSGT00940000168097.b	ENSGT00870000136506.qc.b	ENSGT00940000164851.a.e	ENSGT00940000159906.e.f	ENSGT01100000263608.b.a.b	ENSGT01100000263608.a.a	ENSGT01100000263608.a.b	ENSGT00940000163670.b.b
Rainbow trout	MODERN SPECIES	364	ENSOMYG00000039235	ENSOMYG00000039262	ENSOMYG00000064410	st14b (ENSOMYG00000039274)	nfrkb (ENSOMYG00000039365)	tmem45b (ENSOMYG00000039451)	ENSOMYG00000052403	gng8 (ENSOMYG00000060005)	sycn.2 (ENSOMYG00000039942)	ENSOMYG00000065741	ENSOMYG00000073264	ENSOMYG00000039952	ENSOMYG00000039955	napaa (ENSOMYG00000039684)	ENSOMYG00000040039	ENSOMYG00000040287 #22	ENSOMYG00000040902	ENSOMYG00000040909	ENSOMYG00000041322	ENSOMYG00000044878	ENSOMYG00000044903	b9d2 (ENSOMYG00000044905)	ENSOMYG00000044909	cbr1l (ENSOMYG00000044916)	ENSOMYG00000044929	ENSOMYG00000044941	gabrr3a (ENSOMYG00000044947)	ENSOMYG00000074497	ENSOMYG00000044953	ENSOMYG00000072105	ENSOMYG00000044958
Oncorhynchus_a	ANCESTRAL SPECIES	20	ENSGT00940000163239.h	ENSGT00390000016048	ENSGT00950000182944.A.a.d	ENSGT00650000094922.c.b	ENSGT00940000164481.b.b	ENSGT00390000016213.i	ENSGT00940000157181.d	ENSGT01100000263497.D.g	ENSGT00390000014835	ENSGT00940000175063	ENSGT00940000159256.o	ENSGT00940000158431.a.a.a.a.b.a.c.b.b	ENSGT00390000005826.a.a.u.b	ENSGT00500000044869.a.b.n	ENSGT00390000017045	ENSGT00940000156546.ab #22	ENSGT00440000037341.b.b	ENSGT00940000155312.b.f	ENSGT00940000155288.b.pd.a.b	ENSGT00940000160232.k.b	ENSGT00940000161428.b	ENSGT00940000160457.a.c	ENSGT00940000168097.b	ENSGT00870000136506.qc.b	ENSGT00940000164851.a.e	ENSGT00940000159906.e.f	ENSGT01100000263608.b.a.b	ENSGT01100000263608.a.a	ENSGT00940000163670.b.b	ENSGT00940000156371.c.b.h	ENSGT01100000263599
Chinook salmon	MODERN SPECIES	26	ENSOTSG00005003148	NEU3 (ENSOTSG00005003141)	ENSOTSG00005003135	defbl2 (ENSOTSG00005003131)	st14b (ENSOTSG00005003120)	nfrkb (ENSOTSG00005003031)	tmem45b (ENSOTSG00005002929)	gng8 (ENSOTSG00005047214)	sycn.2 (ENSOTSG00005047213)	ENSOTSG00005047211	ENSOTSG00005047209	ENSOTSG00005047207	napaa (ENSOTSG00005047203)	RSPH6A (ENSOTSG00005047200)	SYMPK (ENSOTSG00005047198)	ENSOTSG00005047177 #22	im:7138535 (ENSOTSG00005047176)	zgc:153345 (ENSOTSG00005047175)	ENSOTSG00005047145	b9d2 (ENSOTSG00005047143)	ENSOTSG00005047141	cbr1l (ENSOTSG00005047140)	cbr1l (ENSOTSG00005047139)	sms (ENSOTSG00005047137)	ENSOTSG00005047134	gabrr3a (ENSOTSG00005047132)	ENSOTSG00005047131	ENSOTSG00005047130	ENSOTSG00005047127	ENSOTSG00005047126	ENSOTSG00005047125
Coho salmon	MODERN SPECIES	21	chrdl2 (ENSOKIG00005049818)	ENSOKIG00005049811	NEU3 (ENSOKIG00005049809)	defbl2 (ENSOKIG00005049807)	st14b (ENSOKIG00005049804)	nfrkb (ENSOKIG00005049797)	tmem45b (ENSOKIG00005049790)	gng8 (ENSOKIG00005049786)	sycn.2 (ENSOKIG00005049782)	ENSOKIG00005049780	ENSOKIG00005049772	ENSOKIG00005049767	napaa (ENSOKIG00005049734)	RSPH6A (ENSOKIG00005049717)	SYMPK (ENSOKIG00005049688)	ENSOKIG00005049610 #22	im:7138535 (ENSOKIG00005049601)	ENSOKIG00005049597	RYR1 (ENSOKIG00005048019)	ENSOKIG00005047749	b9d2 (ENSOKIG00005047741)	ENSOKIG00005047726	cbr1l (ENSOKIG00005047711)	SMS (ENSOKIG00005047684)	ENSOKIG00005047651	gabrr3a (ENSOKIG00005047644)	ENSOKIG00005047638	ENSOKIG00005047624	ENSOKIG00005047615	ENSOKIG00005047604	ENSOKIG00005047582
Salmo	ANCESTRAL SPECIES	1	ENSGT00390000016048	ENSGT00950000182944.A.a.d	ENSGT00390000015701.a	ENSGT00650000094922.c.b	ENSGT00940000164481.b.b	ENSGT00390000016213.i	ENSGT00940000157181.d	ENSGT01100000263497.D.g	ENSGT00390000014835	ENSGT00940000175063	ENSGT00940000159256.o	ENSGT00940000158431.a.a.a.a.b.a.c.b.b	ENSGT00390000005826.a.a.u.b	ENSGT00500000044869.a.b.n	ENSGT00390000017045	ENSGT00940000156546.ab #22	ENSGT00440000037341.b.b	ENSGT00940000155312.b.f	ENSGT00940000155288.b.pd.a.b	ENSGT00940000160232.k.b	ENSGT01080000258246	ENSGT00940000161428.b	ENSGT00940000160457.a.c	ENSGT00940000168097.b	ENSGT00510000046499.q	ENSGT00870000136506.qc.b	ENSGT00940000164851.a.e	ENSGT00940000159906.e.f	ENSGT01100000263608.b.a.b	ENSGT00940000163670.b.b	ENSGT01100000263608.a.a
Atlantic salmon	MODERN SPECIES	2	tnfsf13 (ENSSSAG00000073630)	ENSSSAG00000073637	ENSSSAG00000090984	ENSSSAG00000095379	ENSSSAG00000107002	ENSSSAG00000094050	neu3 (ENSSSAG00000073782)	wdr73 (ENSSSAG00000108080)	nfrkb (ENSSSAG00000073822)	tmem45b (ENSSSAG00000115863)	gng8 (ENSSSAG00000115132)	sycn.2 (ENSSSAG00000112117)	ENSSSAG00000074230	napaa (ENSSSAG00000074237)	sympk (ENSSSAG00000074347)	hnrnpul1l (ENSSSAG00000075871) #22	ENSSSAG00000076644	ENSSSAG00000076708	ENSSSAG00000077487	ENSSSAG00000077813	b9d2 (ENSSSAG00000077816)	ENSSSAG00000077821	DHCA (ENSSSAG00000077830)	ENSSSAG00000077847	spsy (ENSSSAG00000077867)	ENSSSAG00000081158	ENSSSAG00000096553	gabrr3a (ENSSSAG00000077907)	ENSSSAG00000077924	ENSSSAG00000077931	ENSSSAG00000077939
River trout	MODERN SPECIES	3	ENSSTUG00000046036	NEU3 (ENSSTUG00000046047)	wdr73 (ENSSTUG00000046055)	defbl2 (ENSSTUG00000046120)	st14b (ENSSTUG00000046135)	nfrkb (ENSSTUG00000031824)	tmem45b (ENSSTUG00000032000)	gng8 (ENSSTUG00000032015)	sycn.2 (ENSSTUG00000032019)	ENSSTUG00000032020	ENSSTUG00000032033	ENSSTUG00000032058	napaa (ENSSTUG00000032065)	ENSSTUG00000032183	SYMPK (ENSSTUG00000032251)	ENSSTUG00000032958 #22	im:7138535 (ENSSTUG00000034887)	zgc:153345 (ENSSTUG00000034900)	RYR1 (ENSSTUG00000035043)	ENSSTUG00000041039	ENSSTUG00000041272	b9d2 (ENSSTUG00000041284)	ENSSTUG00000041306	cbr1l (ENSSTUG00000041339)	sms (ENSSTUG00000041392)	ENSSTUG00000041656	gabrr3a (ENSSTUG00000041846)	ENSSTUG00000041913	ENSSTUG00000041936	ENSSTUG00000041942	ENSSTUG00000041969
Elephant shark	MODERN SPECIES	1547	ENSCMIG00000019197	ENSCMIG00000019169 #27	ENSCMIG00000019155	srd5a2b (ENSCMIG00000019153)	AHCTF1 (ENSCMIG00000019106) #15	ENSCMIG00000019058	sccpdha.2 (ENSCMIG00000019049) #16	ENSCMIG00000019041	ENSCMIG00000019040	tfb2m (ENSCMIG00000019037) #18	ENSCMIG00000019033	ENSCMIG00000019030	SMYD3 (ENSCMIG00000019029) #19	KIF26B (ENSCMIG00000019025) #20	EFCAB2 (ENSCMIG00000019023) #21	hnrnpub (ENSCMIG00000018940) #22	cox20 (ENSCMIG00000018908)	tspan33b (ENSCMIG00000018905)	desi2 (ENSCMIG00000018899) #25	arv1 (ENSCMIG00000018896)	ttc13 (ENSCMIG00000018848)	si:ch73-111k22.2 (ENSCMIG00000018823)	ENSCMIG00000018818	TARBP1 (ENSCMIG00000018775)	ENSCMIG00000018755	COA6 (ENSCMIG00000018753)	ENSCMIG00000018751	SLC35F3 (ENSCMIG00000018750)	kcnk1a (ENSCMIG00000018749)