Cyprinoidei	ANCESTRAL SPECIES	4	ENSGT00940000163767.a.a.j ##9	ENSGT00940000163767.a.a.i.a ##9	ENSGT00940000163767.a.a.i.b #9	ENSGT00940000167295 #10	ENSGT01090000260005.a.a.b.a.b #11	ENSGT00940000155932.b.a #12	ENSGT00390000006762.c #13	ENSGT00890000139406.a #14	ENSGT00940000156066.o #15	ENSGT00940000162258.kb.a.b.b #16	ENSGT00940000162258.kb.a.a.b #17	ENSGT00550000074797.a.a #18	ENSGT00940000160802.a #19	ENSGT00990000204401 #20	ENSGT00940000181892 #21	ENSGT00390000001360.q.b #22	ENSGT00940000155420.a.a #23	ENSGT00390000009030	ENSGT00940000159752.i #24	ENSGT00390000002625 #25	ENSGT00940000158363 #26	ENSGT00940000166439 #27	ENSGT00390000002453.a #28	ENSGT00940000158096.e #30	ENSGT00390000001742.b #31	ENSGT00390000007999 #32	ENSGT00940000179201 #34	ENSGT00940000157806.e #35	ENSGT00890000139503 #36	ENSGT00940000159690.a #33	ENSGT00940000156163.i.a #37
Cyprininae	ANCESTRAL SPECIES	14	ENSGT00940000163767.a.a.i.a ##9	ENSGT00940000163767.a.a.i.b #9	ENSGT00940000167295.a #10	ENSGT01090000260005.a.a.b.a.b.b #11	ENSGT00940000155932.b.a.b #12	ENSGT00390000006762.c.a #13	ENSGT00890000139406.a.ab #14	ENSGT00940000156066.o.a #15	ENSGT00940000162258.kb.a.b.b.b #16	ENSGT00550000074797.a.a.b #18	ENSGT00940000162258.kb.a.a.b.b #17	ENSGT00940000162258.kb.a.a.a.a ##17	ENSGT00940000160802.a.d #19	ENSGT00990000204401.a #20	ENSGT00940000181892 #21	ENSGT00390000001360.q.b.a #22	ENSGT00940000155420.a.a.h #23	ENSGT00390000009030	ENSGT00940000159752.i.b #24	ENSGT00390000002625 #25	ENSGT00940000158363.i #26	ENSGT00940000158363.j ##26	ENSGT00940000166439.l ##27	ENSGT00390000002453.a.a ##28	ENSGT00940000158096.e.d ##30	ENSGT00390000001742.b.a ##31	ENSGT00390000007999.k.a ##32	ENSGT00940000157806.e.a ##35	ENSGT00890000139503.b ##36	ENSGT00940000159690.a.a ##33	ENSGT00940000156163.i.a.b ##37
Common carp reference	MODERN SPECIES	26	or71aq1 (ENSCCRG00000066985) #7	or71aq1 (ENSCCRG00000078348) #8	or71aq1 (ENSCCRG00000057034) #9	zgc:171927 (ENSCCRG00000026319) #10	ENSCCRG00000079737 #11	vezf1b (ENSCCRG00000072066) #12	cuedc1b (ENSCCRG00000026326) #13	wsb1 (ENSCCRG00000021312) #14	ENSCCRG00000080609 #15	ENSCCRG00000021401 #16	lgals9l4 (ENSCCRG00000078869) #17	ENSCCRG00000065623 #18	ENSCCRG00000060026 #19	ENSCCRG00000063026 #20	ENSCCRG00000039492 #21	akap1b (ENSCCRG00000026347) #22	msi2b (ENSCCRG00000077313) #23	nos2b (ENSCCRG00000002048) #24	lyrm9 (ENSCCRG00000002540) #25	nlk2 (ENSCCRG00000045476) #26	ENSCCRG00000045470 #27	ENSCCRG00000045887 #28	ENSCCRG00000022019 #29	ENSCCRG00000049207 #30	zgc:153372 (ENSCCRG00000028305) #31	ENSCCRG00000028300 #32	ENSCCRG00000057215 #33	si:ch211-207n23.2 (ENSCCRG00000068793) #34	samsn1a (ENSCCRG00000021531) #35	hspa13 (ENSCCRG00000074795) #36	serpinh1b (ENSCCRG00000024067) #37
Cyprininae	ANCESTRAL SPECIES	449	ENSGT00940000163767.a.b ##9	ENSGT00940000165062.f	ENSGT00940000165062.e.b.b	ENSGT00940000163767.a.a.j.b ##9	ENSGT00940000167295.b ##10	ENSGT01090000260005.a.a.b.a.b.a ##11	ENSGT00940000155932.b.a.a ##12	ENSGT00390000006762.c.b ##13	ENSGT00890000139406.a.`b ##14	ENSGT00940000156066.o.b ##15	ENSGT00940000162258.kb.a.b.b.a ##17	ENSGT00940000162258.kb.a.a.b.a ##17	ENSGT00940000162258.kb.a.b.a ##17	ENSGT00940000160802.a.c ##19	ENSGT00550000074797.a.a.a ##18	ENSGT00390000001360.q.b.b ##22	ENSGT00940000155420.a.b.b ##23
Goldfish	MODERN SPECIES	34	SLC25A36 (ENSCARG00000034257)	ENSCARG00000034212	ENSCARG00000034196	ENSCARG00000034180 ##18	ENSCARG00000034169 ##17	ENSCARG00000034115 ##17	ENSCARG00000034050 ##15	wsb1 (ENSCARG00000034018) ##14	ENSCARG00000034003	cuedc1b (ENSCARG00000033982) ##13	vezf1b (ENSCARG00000033960) ##12	ENSCARG00000032192	OMG (ENSCARG00000032138) ##19	ENSCARG00000032129 ##20	NF1 (ENSCARG00000031607) ##18	akap1b (ENSCARG00000031328) ##22	ENSCARG00000031307 ##23	GABBR1 (ENSCARG00000029208)	tnfb (ENSCARG00000029116)	lta (ENSCARG00000029107)	bag6 (ENSCARG00000028999)	tspan13a (ENSCARG00000028961)	ankmy2a (ENSCARG00000028499)	sostdc1a (ENSCARG00000028480)	MEOX2 (ENSCARG00000028458)	agmo (ENSCARG00000028436)	etv1 (ENSCARG00000027818)	arl4aa (ENSCARG00000027793)	tmem106ba (ENSCARG00000027784)	ENSCARG00000027777	mag (ENSCARG00000027761)
Cyprininae_a	ANCESTRAL SPECIES	28	ENSGT00950000182847.b.a.g.a	ENSGT00940000163767.a.b ##9	ENSGT00940000165062.f	ENSGT00940000165062.e.b.b	ENSGT00940000163767.a.a.j.b ##9	ENSGT00940000167295.b ##10	ENSGT01090000260005.a.a.b.a.b.a ##11	ENSGT00940000155932.b.a.a ##12	ENSGT00390000006762.c.b ##13	ENSGT00890000139406.a.`b ##14	ENSGT00940000156066.o.b ##15	ENSGT00940000162258.kb.a.b.b.a ##17	ENSGT00940000162258.kb.a.b.a ##17	ENSGT00940000160802.a.c ##19	ENSGT00550000074797.a.a.a ##18	ENSGT00390000001360.q.b.b ##22	ENSGT00940000155420.a.a.g ##23	ENSGT00940000159752.i.a ##24	ENSGT00940000159752.i.b #24	ENSGT00390000002625 #25	ENSGT00940000158363.j ##26	ENSGT00940000166439.l ##27	ENSGT00390000002453.a.a ##28	ENSGT00940000158096.e.d ##30	ENSGT00390000001742.b.a ##31	ENSGT00390000007999.k.a ##32	ENSGT00940000157806.e.a ##35	ENSGT00890000139503.b ##36	ENSGT00940000159690.a.a ##33	ENSGT00940000156163.i.a.b ##37	ENSGT00940000166134.a
Common carp reference	MODERN SPECIES	39	or71ar1 (ENSCCRG00000057767)	ENSCCRG00000055656 ##9	or71ar1 (ENSCCRG00000076608)	or71as2 (ENSCCRG00000071700)	or71at1 (ENSCCRG00000066522) ##9	zgc:171927 (ENSCCRG00000070633) ##10	ENSCCRG00000081054 ##11	vezf1b (ENSCCRG00000021299) ##12	ENSCCRG00000079289	cuedc1b (ENSCCRG00000021302) ##13	wsb1 (ENSCCRG00000071488) ##14	ENSCCRG00000021332 ##15	ENSCCRG00000057259 ##17	ENSCCRG00000068838 ##19	ENSCCRG00000074513 ##18	akap1b (ENSCCRG00000028319) ##22	msi2b (ENSCCRG00000032061) ##23	nos2b (ENSCCRG00000001890) ##24	nlk2 (ENSCCRG00000002027) ##26	ENSCCRG00000045885 ##27	ENSCCRG00000045422 ##28	ENSCCRG00000011790 ##30	zgc:153372 (ENSCCRG00000028273) ##31	ENSCCRG00000028270 ##32	samsn1a (ENSCCRG00000039962) ##35	hspa13 (ENSCCRG00000082266) ##36	ENSCCRG00000052898 ##33	serpinh1b (ENSCCRG00000023068) ##37	gucy2f (ENSCCRG00000023369)	tsku (ENSCCRG00000063835)	ENSCCRG00000020267
Golden-line barbel	MODERN SPECIES	160	ENSSGRG00000031385	utp23 (ENSSGRG00000031384)	or71as2 (ENSSGRG00000031382)	or71at1 (ENSSGRG00000031380) ##9	or71aq2 (ENSSGRG00000031377) ##9	or71aq1 (ENSSGRG00000031375) #9	zgc:171927 (ENSSGRG00000031374) ##10	ENSSGRG00000031373 ##11	vezf1b (ENSSGRG00000031371) ##12	cuedc1b (ENSSGRG00000031361) ##13	wsb1 (ENSSGRG00000031358) ##14	KSR1 (ENSSGRG00000031353) ##15	ENSSGRG00000031351 ##17	OMG (ENSSGRG00000031350) ##19	NF1 (ENSSGRG00000031139) ##18	akap1b (ENSSGRG00000031100) ##22	msi2b (ENSSGRG00000031096) ##23	nos2b (ENSSGRG00000030890) ##24	lyrm9 (ENSSGRG00000030886) #25	nlk2 (ENSSGRG00000030841) ##26	ENSSGRG00000030839 ##27	ENSSGRG00000030838 ##28	kcnk2b (ENSSGRG00000030836)	smyd2b (ENSSGRG00000030832)	ENSSGRG00000030831
Zebrafish	MODERN SPECIES	6	or71aq1 (ENSDARG00000054734) #9	zgc:171927 (ENSDARG00000033056) #10	ENSDARG00000054744	vezf1b (ENSDARG00000061030) #12	cuedc1b (ENSDARG00000054748) #13	wsb1 (ENSDARG00000021343) #14	KSR1 (ENSDARG00000030933) #15	lgals9l3 (ENSDARG00000041060) #16	lgals9l1 (ENSDARG00000025903) #16	lgals9l4 (ENSDARG00000069058) #17	ENSDARG00000030025	lgals9l5 (ENSDARG00000087311) #17	ENSDARG00000093059 #17	OMG (ENSDARG00000089444) #19	NF1 (ENSDARG00000012982) #18	akap1b (ENSDARG00000006062) #22	msi2b (ENSDARG00000032614) #23	mrps23 (ENSDARG00000033973)	nos2b (ENSDARG00000031976) #24	lyrm9 (ENSDARG00000075528) #25	nlk2 (ENSDARG00000028793) #26	ENSDARG00000069066 #27	zgc:153372 (ENSDARG00000068967) #31	NRIP1 (ENSDARG00000068965) #32	si:ch211-207n23.2 (ENSDARG00000097157) #34	samsn1a (ENSDARG00000054543) #35	hspa13 (ENSDARG00000040984) #36	ENSDARG00000109743	ENSDARG00000110949	GDPD5 (ENSDARG00000076962) #33	serpinh1b (ENSDARG00000019949) #37