Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.a #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.a #22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182916.a.a #22
Sarcopterygii	ANCESTRAL SPECIES	367							ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22
Tetrapoda	ANCESTRAL SPECIES	59	ENSGT00940000159179	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000155854	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.d	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22
Amniota	ANCESTRAL SPECIES	23	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000155854	ENSGT00940000163280	ENSGT00950000185823	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.d	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00390000018044.b.b	ENSGT00940000163917.b	ENSGT00950000182938.b.b.b.b.b.a
Mammalia	ANCESTRAL SPECIES	61	ENSGT00940000154587.a.b	ENSGT00940000159179	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000155854	ENSGT00940000163280	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.d	ENSGT00940000162613	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT01000000216439	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163917.b	ENSGT00940000160775
Theria	ANCESTRAL SPECIES	41															ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT01000000216439	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163917.b	ENSGT00940000160775
Eutheria	ANCESTRAL SPECIES	24						ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b ##17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000164119 #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT01000000216439	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000164119 #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00940000164119 #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Primates	ANCESTRAL SPECIES	18	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185200	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185200	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185200	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185200	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00910000147504	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185200	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00910000147504	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Rhinopithecus	ANCESTRAL SPECIES	5	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00940000164119 #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Black snub-nosed monkey	MODERN SPECIES	1375							ZNF57 (ENSRBIG00000044805) #13	ZNF77 (ENSRBIG00000029867) #14	TLE6 (ENSRBIG00000039750) #15	TLE2 (ENSRBIG00000028459) #16	TLE5 (ENSRBIG00000001610) #17	GNA11 (ENSRBIG00000020274) #18	GNA15 (ENSRBIG00000036769) #19	NCLN (ENSRBIG00000040050) #20	ENSRBIG00000038502 #21	NFIC (ENSRBIG00000040502) #22	SMIM24 (ENSRBIG00000033962) #23	SMIM44 (ENSRBIG00000033666) #24	DOHH (ENSRBIG00000039236) #25	FZR1 (ENSRBIG00000040539) #26	TEKTIP1 (ENSRBIG00000028614) #27	MFSD12 (ENSRBIG00000017416) #28	HMG20B (ENSRBIG00000041734) #29	GIPC3 (ENSRBIG00000038552) #30	TBXA2R (ENSRBIG00000036411) #31	CACTIN (ENSRBIG00000006919) #32	TTC7A (ENSRBIG00000043771) #33	STPG4 (ENSRBIG00000014563) #34	ENSRBIG00000033764 #35	EPCAM (ENSRBIG00000042447) #36	MSH2 (ENSRBIG00000031403) #37
Golden snub-nosed monkey	MODERN SPECIES	1318	SLC39A3 (ENSRROG00000028677)	SGTA (ENSRROG00000018224)	THOP1 (ENSRROG00000031016)	ZNF554 (ENSRROG00000039041)	ZNF555 (ENSRROG00000043176)	ZNF556 (ENSRROG00000007558)	ZNF57 (ENSRROG00000030059) #13	ZNF77 (ENSRROG00000028828) #14	TLE6 (ENSRROG00000018085) #15	TLE2 (ENSRROG00000033121) #16	TLE5 (ENSRROG00000038789) #17	GNA11 (ENSRROG00000032415) #18	GNA15 (ENSRROG00000035571) #19	NCLN (ENSRROG00000028611) #20	CELF5 (ENSRROG00000032625)	NFIC (ENSRROG00000044677) #22	SMIM24 (ENSRROG00000032951) #23	SMIM44 (ENSRROG00000030107) #24	DOHH (ENSRROG00000043930) #25	FZR1 (ENSRROG00000036142) #26	TEKTIP1 (ENSRROG00000042406) #27	MFSD12 (ENSRROG00000038465) #28	HMG20B (ENSRROG00000012256) #29	ENSRROG00000044154	GIPC3 (ENSRROG00000031972) #30	TBXA2R (ENSRROG00000044222) #31	CACTIN (ENSRROG00000032395) #32	PIP5K1C (ENSRROG00000032134)	TJP3 (ENSRROG00000024434)	APBA3 (ENSRROG00000033516)	MRPL54 (ENSRROG00000018776)
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185200	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00910000147504	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000164119 #21	ENSGT00950000182916.a.a #22	ENSGT00950000185200	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00910000147504	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b.a.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Macaca	ANCESTRAL SPECIES	24	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000164313	ENSGT00940000163425	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00950000182916.a.a #22	ENSGT00950000185200	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b.a.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Pig-tailed macaque	MODERN SPECIES	76	ENSMNEG00000041965	SLC39A3 (ENSMNEG00000028479)	SGTA (ENSMNEG00000027965)	THOP1 (ENSMNEG00000026622)	ZNF554 (ENSMNEG00000035698)	ZNF555 (ENSMNEG00000031744)	ZNF77 (ENSMNEG00000039599) #14	TLE6 (ENSMNEG00000032520) #15	TLE2 (ENSMNEG00000036907) #16	TLE5 (ENSMNEG00000013087) #17	GNA11 (ENSMNEG00000045417) #18	GNA15 (ENSMNEG00000041090) #19	S1PR4 (ENSMNEG00000020638)	NCLN (ENSMNEG00000036405) #20	ENSMNEG00000001853	NFIC (ENSMNEG00000042199) #22	SMIM24 (ENSMNEG00000038502) #23	SMIM44 (ENSMNEG00000032843) #24	DOHH (ENSMNEG00000040585) #25	FZR1 (ENSMNEG00000028728) #26	TEKTIP1 (ENSMNEG00000031534) #27	MFSD12 (ENSMNEG00000036659) #28	HMG20B (ENSMNEG00000037721) #29	GIPC3 (ENSMNEG00000033247) #30	TBXA2R (ENSMNEG00000029210) #31	CACTIN (ENSMNEG00000038257) #32	PIP5K1C (ENSMNEG00000023721)	TJP3 (ENSMNEG00000029063)	APBA3 (ENSMNEG00000028714)	MRPL54 (ENSMNEG00000039499)	RAX2 (ENSMNEG00000034075)
Macaca_a	ANCESTRAL SPECIES	1	ENSGT01100000263497.E.a.b	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000164313	ENSGT00940000163425	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00950000182916.a.a #22	ENSGT00950000185200	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Crab-eating macaque	MODERN SPECIES	10	LMNB2 (ENSMFAG00000044219)	GADD45B (ENSMFAG00000042254)	ENSMFAG00000065748	ENSMFAG00000058005	SGTA (ENSMFAG00000034409)	THOP1 (ENSMFAG00000036742)	ZNF554 (ENSMFAG00000045795)	ZNF555 (ENSMFAG00000044275)	ZNF556 (ENSMFAG00000039163)	ZNF77 (ENSMFAG00000045401) #14	TLE6 (ENSMFAG00000003537) #15	TLE2 (ENSMFAG00000033930) #16	TLE5 (ENSMFAG00000057458) #17	ENSMFAG00000031277	ENSMFAG00000050957	NFIC (ENSMFAG00000000744) #22	SMIM24 (ENSMFAG00000037612) #23	FZR1 (ENSMFAG00000003458) #26	TEKTIP1 (ENSMFAG00000036699) #27	MFSD12 (ENSMFAG00000039649) #28	APBA3 (ENSMFAG00000044015)	MRPL54 (ENSMFAG00000003311)	MATK (ENSMFAG00000030470)	RAX2 (ENSMFAG00000065615)	ZFR2 (ENSMFAG00000031215)	ATCAY (ENSMFAG00000002982)	ENSMFAG00000040276	ENSMFAG00000052942	ENSMFAG00000028991	NMRK2 (ENSMFAG00000033332)	PIAS4 (ENSMFAG00000046119)
Rhesus	MODERN SPECIES	10	DIRAS1 (ENSMMUG00000040263)	SGTA (ENSMMUG00000007265)	THOP1 (ENSMMUG00000007268)	ZNF554 (ENSMMUG00000055755)	ZNF555 (ENSMMUG00000007485)	ZNF556 (ENSMMUG00000048942)	ZNF77 (ENSMMUG00000008458) #14	TLE6 (ENSMMUG00000002912) #15	TLE2 (ENSMMUG00000002913) #16	ENSMMUG00000050313	GNA11 (ENSMMUG00000002961) #18	GNA15 (ENSMMUG00000047845) #19	NCLN (ENSMMUG00000017036) #20	CELF5 (ENSMMUG00000015513)	ENSMMUG00000060497	NFIC (ENSMMUG00000003439) #22	ENSMMUG00000057142	ENSMMUG00000050017	SMIM24 (ENSMMUG00000010560) #23	SMIM44 (ENSMMUG00000059495) #24	DOHH (ENSMMUG00000057146) #25	FZR1 (ENSMMUG00000019870) #26	TEKTIP1 (ENSMMUG00000039983) #27	MFSD12 (ENSMMUG00000010653) #28	HMG20B (ENSMMUG00000018096) #29	GIPC3 (ENSMMUG00000011402) #30	TBXA2R (ENSMMUG00000011403) #31	CACTIN (ENSMMUG00000028931) #32	PIP5K1C (ENSMMUG00000008137)	TJP3 (ENSMMUG00000028930)	APBA3 (ENSMMUG00000009672)
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000164119 #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00910000147504	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00910000148398	ENSGT00390000003420.b.a.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Cercopithecinae_d	ANCESTRAL SPECIES	22	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000164119 #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00910000147504	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00910000148398	ENSGT00390000003420.b.a.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Sooty mangabey	MODERN SPECIES	177	ENSCATG00000006442	SGTA (ENSCATG00000033872)	THOP1 (ENSCATG00000015509)	ZNF554 (ENSCATG00000044721)	ZNF555 (ENSCATG00000041704)	ZNF556 (ENSCATG00000039430)	ZNF77 (ENSCATG00000039733) #14	TLE6 (ENSCATG00000041256) #15	TLE2 (ENSCATG00000035147) #16	TLE5 (ENSCATG00000040517) #17	GNA11 (ENSCATG00000038504) #18	GNA15 (ENSCATG00000044954) #19	S1PR4 (ENSCATG00000017923)	NCLN (ENSCATG00000044668) #20	ENSCATG00000044494	NFIC (ENSCATG00000037966) #22	SMIM24 (ENSCATG00000037417) #23	SMIM44 (ENSCATG00000030734) #24	DOHH (ENSCATG00000033001) #25	FZR1 (ENSCATG00000044993) #26	TEKTIP1 (ENSCATG00000044766) #27	MFSD12 (ENSCATG00000045111) #28	HMG20B (ENSCATG00000034700) #29	GIPC3 (ENSCATG00000041662) #30	TBXA2R (ENSCATG00000037254) #31	CACTIN (ENSCATG00000042320) #32	PIP5K1C (ENSCATG00000033912)	TJP3 (ENSCATG00000038428)	APBA3 (ENSCATG00000040664)	MRPL54 (ENSCATG00000014066)	RAX2 (ENSCATG00000038515)
Drill	MODERN SPECIES	1534								TLE6 (ENSMLEG00000000586) #15	TLE2 (ENSMLEG00000008863) #16	TLE5 (ENSMLEG00000038877) #17	GNA11 (ENSMLEG00000004955) #18	GNA15 (ENSMLEG00000033896) #19	S1PR4 (ENSMLEG00000020497)	NCLN (ENSMLEG00000041935) #20	ENSMLEG00000000058 #21	NFIC (ENSMLEG00000039794) #22	SMIM24 (ENSMLEG00000030699) #23	SMIM44 (ENSMLEG00000031138) #24	DOHH (ENSMLEG00000037533) #25	FZR1 (ENSMLEG00000042148) #26	TEKTIP1 (ENSMLEG00000038754) #27	ENSMLEG00000030548	MFSD12 (ENSMLEG00000040700) #28	ENSMLEG00000035384	GIPC3 (ENSMLEG00000025100) #30	TBXA2R (ENSMLEG00000040764) #31	CACTIN (ENSMLEG00000017451) #32	PIP5K1C (ENSMLEG00000031430)	TJP3 (ENSMLEG00000019934)	APBA3 (ENSMLEG00000038059)	ENSMLEG00000039241
Olive baboon	MODERN SPECIES	12	ANKRD24 (ENSPANG00000007947)	SIRT6 (ENSPANG00000004922)	CREB3L3 (ENSPANG00000003567)	MAP2K2 (ENSPANG00000008882)	ZBTB7A (ENSPANG00000010574)	PIAS4 (ENSPANG00000003087)	EEF2 (ENSPANG00000007589)	NMRK2 (ENSPANG00000013229)	ATCAY (ENSPANG00000000280)	ZFR2 (ENSPANG00000003088)	MATK (ENSPANG00000017163)	RAX2 (ENSPANG00000013783)	MRPL54 (ENSPANG00000033944)	APBA3 (ENSPANG00000003568)	TJP3 (ENSPANG00000013784)	NFIC (ENSPANG00000004923) #22	SMIM44 (ENSPANG00000029842) #24	DOHH (ENSPANG00000032446) #25	FZR1 (ENSPANG00000004724) #26	TEKTIP1 (ENSPANG00000019078) #27	ENSPANG00000010575	GIPC3 (ENSPANG00000038587) #30	TBXA2R (ENSPANG00000018961) #31	CACTIN (ENSPANG00000019259) #32	TLE6 (ENSPANG00000014013) #15	ENSPANG00000012740 #16	ENSPANG00000047059 #16	TLE5 (ENSPANG00000016061) #17	GNA11 (ENSPANG00000011891) #18	GNA15 (ENSPANG00000002676) #19	S1PR4 (ENSPANG00000020422)
Vervet Monkey	MODERN SPECIES	25	SGTA (ENSCSAG00000011493)	THOP1 (ENSCSAG00000011480)	ENSCSAG00000011474	ZNF554 (ENSCSAG00000011470)	ZNF555 (ENSCSAG00000011462)	ZNF556 (ENSCSAG00000011448)	ZNF57 (ENSCSAG00000011445) #13	ZNF77 (ENSCSAG00000011439) #14	TLE6 (ENSCSAG00000011416) #15	TLE2 (ENSCSAG00000011330) #16	GNA11 (ENSCSAG00000011235) #18	GNA15 (ENSCSAG00000011230) #19	S1PR4 (ENSCSAG00000018815)	NCLN (ENSCSAG00000011222) #20	CELF5 (ENSCSAG00000011210)	NFIC (ENSCSAG00000011182) #22	SMIM24 (ENSCSAG00000011179) #23	DOHH (ENSCSAG00000011169) #25	FZR1 (ENSCSAG00000011164) #26	TEKTIP1 (ENSCSAG00000011154) #27	MFSD12 (ENSCSAG00000011148) #28	HMG20B (ENSCSAG00000011140) #29	GIPC3 (ENSCSAG00000011131) #30	TBXA2R (ENSCSAG00000011119) #31	CACTIN (ENSCSAG00000011116) #32	PIP5K1C (ENSCSAG00000011108)	TJP3 (ENSCSAG00000011066)	APBA3 (ENSCSAG00000010973)	MRPL54 (ENSCSAG00000010950)	RAX2 (ENSCSAG00000010944)	MATK (ENSCSAG00000010938)
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00910000147504	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Hominidae	ANCESTRAL SPECIES		ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033.c #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00910000147504	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033.c.a #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Gorilla	MODERN SPECIES	10	SGTA (ENSGGOG00000007913)	THOP1 (ENSGGOG00000007922)	ZNF554 (ENSGGOG00000026098)	ENSGGOG00000001761	ZNF556 (ENSGGOG00000008748)	ZNF57 (ENSGGOG00000006285) #13	ZNF77 (ENSGGOG00000010217) #14	TLE6 (ENSGGOG00000014760) #15	TLE2 (ENSGGOG00000014765) #16	ENSGGOG00000010731 #17	GNA11 (ENSGGOG00000014995) #18	ENSGGOG00000040253	GNA15 (ENSGGOG00000003077) #19	NCLN (ENSGGOG00000010398) #20	ENSGGOG00000041211	NFIC (ENSGGOG00000006557) #22	ENSGGOG00000038229	SMIM44 (ENSGGOG00000036474) #24	ENSGGOG00000011214 #25	FZR1 (ENSGGOG00000002200) #26	TEKTIP1 (ENSGGOG00000002202) #27	MFSD12 (ENSGGOG00000002205) #28	HMG20B (ENSGGOG00000014805) #29	GIPC3 (ENSGGOG00000027202) #30	TBXA2R (ENSGGOG00000013761) #31	CACTIN (ENSGGOG00000012532) #32	PIP5K1C (ENSGGOG00000012543)	TJP3 (ENSGGOG00000004626)	APBA3 (ENSGGOG00000004637)	MRPL54 (ENSGGOG00000014722)	RAX2 (ENSGGOG00000014727)
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033.c.a #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Pan	ANCESTRAL SPECIES	14	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033.c.a #18	ENSGT00940000161736 #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Bonobo	MODERN SPECIES	10	SLC39A3 (ENSPPAG00000043276)	SGTA (ENSPPAG00000018507)	THOP1 (ENSPPAG00000032083)	ZNF554 (ENSPPAG00000039331)	ZNF555 (ENSPPAG00000042762)	ZNF556 (ENSPPAG00000015477)	ENSPPAG00000028174 #13	ZNF77 (ENSPPAG00000031195) #14	TLE6 (ENSPPAG00000029714) #15	ENSPPAG00000038446 #16	ENSPPAG00000007067 #17	GNA11 (ENSPPAG00000038754) #18	GNA15 (ENSPPAG00000041303) #19	NCLN (ENSPPAG00000043465) #20	ENSPPAG00000029786	NFIC (ENSPPAG00000036536) #22	SMIM24 (ENSPPAG00000041504) #23	SMIM44 (ENSPPAG00000032436) #24	DOHH (ENSPPAG00000004289) #25	FZR1 (ENSPPAG00000043553) #26	TEKTIP1 (ENSPPAG00000035424) #27	MFSD12 (ENSPPAG00000040119) #28	HMG20B (ENSPPAG00000042698) #29	GIPC3 (ENSPPAG00000005107) #30	TBXA2R (ENSPPAG00000033099) #31	CACTIN (ENSPPAG00000028205) #32	PIP5K1C (ENSPPAG00000029984)	TJP3 (ENSPPAG00000040704)	APBA3 (ENSPPAG00000026188)	MRPL54 (ENSPPAG00000042418)	RAX2 (ENSPPAG00000039142)
Chimpanzee	MODERN SPECIES	10	SGTA (ENSPTRG00000010243)	THOP1 (ENSPTRG00000010244)	ZNF554 (ENSPTRG00000010245)	ZNF555 (ENSPTRG00000010246)	ZNF556 (ENSPTRG00000010247)	ZNF57 (ENSPTRG00000010248) #13	ZNF77 (ENSPTRG00000010249) #14	TLE6 (ENSPTRG00000010250) #15	TLE2 (ENSPTRG00000010252) #16	ENSPTRG00000043065 #16	TLE5 (ENSPTRG00000010253) #17	GNA11 (ENSPTRG00000010254) #18	GNA15 (ENSPTRG00000010256) #19	NCLN (ENSPTRG00000010258) #20	CELF5 (ENSPTRG00000010259)	NFIC (ENSPTRG00000010261) #22	SMIM24 (ENSPTRG00000049658) #23	SMIM44 (ENSPTRG00000050433) #24	DOHH (ENSPTRG00000010263) #25	FZR1 (ENSPTRG00000010264) #26	TEKTIP1 (ENSPTRG00000010265) #27	MFSD12 (ENSPTRG00000010267) #28	HMG20B (ENSPTRG00000010268) #29	GIPC3 (ENSPTRG00000010269) #30	TBXA2R (ENSPTRG00000050832) #31	CACTIN (ENSPTRG00000010272) #32	PIP5K1C (ENSPTRG00000010273)	TJP3 (ENSPTRG00000010274)	APBA3 (ENSPTRG00000010275)	MRPL54 (ENSPTRG00000010276)	RAX2 (ENSPTRG00000010277)
Human	MODERN SPECIES	10	SGTA (ENSG00000104969)	THOP1 (ENSG00000172009)	ZNF554 (ENSG00000172006)	ZNF555 (ENSG00000186300)	ZNF556 (ENSG00000172000)	ZNF57 (ENSG00000171970) #13	ZNF77 (ENSG00000175691) #14	TLE6 (ENSG00000104953) #15	TLE2 (ENSG00000065717) #16	TLE5 (ENSG00000104964) #17	GNA11 (ENSG00000088256) #18	GNA15 (ENSG00000060558) #19	S1PR4 (ENSG00000125910)	NCLN (ENSG00000125912) #20	CELF5 (ENSG00000161082)	NFIC (ENSG00000141905) #22	SMIM24 (ENSG00000095932) #23	SMIM44 (ENSG00000284638) #24	DOHH (ENSG00000129932) #25	FZR1 (ENSG00000105325) #26	MFSD12 (ENSG00000161091) #28	TEKTIP1 (ENSG00000183397) #27	HMG20B (ENSG00000064961) #29	GIPC3 (ENSG00000179855) #30	TBXA2R (ENSG00000006638) #31	CACTIN (ENSG00000105298) #32	PIP5K1C (ENSG00000186111)	TJP3 (ENSG00000105289)	APBA3 (ENSG00000011132)	MRPL54 (ENSG00000183617)	RAX2 (ENSG00000173976)
Orangutan	MODERN SPECIES	10	THOP1 (ENSPPYG00000009359)	ZNF554 (ENSPPYG00000039445)	ENSPPYG00000012058	ENSPPYG00000012138	ZNF555 (ENSPPYG00000009360)	ZNF556 (ENSPPYG00000039854)	ZNF77 (ENSPPYG00000009361) #14	TLE6 (ENSPPYG00000009362) #15	TLE2 (ENSPPYG00000009363) #16	ENSPPYG00000009364 #17	GNA11 (ENSPPYG00000009366) #18	GNA15 (ENSPPYG00000009367) #19	S1PR4 (ENSPPYG00000009368)	NCLN (ENSPPYG00000009369) #20	CELF5 (ENSPPYG00000009370)	NFIC (ENSPPYG00000009371) #22	ENSPPYG00000032854 #23	SMIM44 (ENSPPYG00000009372) #24	DOHH (ENSPPYG00000009373) #25	FZR1 (ENSPPYG00000009374) #26	TEKTIP1 (ENSPPYG00000009376) #27	ENSPPYG00000034014	MFSD12 (ENSPPYG00000009377) #28	HMG20B (ENSPPYG00000009378) #29	GIPC3 (ENSPPYG00000009379) #30	TBXA2R (ENSPPYG00000009381) #31	CACTIN (ENSPPYG00000009382) #32	PIP5K1C (ENSPPYG00000009383)	TJP3 (ENSPPYG00000009384)	APBA3 (ENSPPYG00000009385)	MRPL54 (ENSPPYG00000040130)
Gibbon	MODERN SPECIES	7	SLC39A3 (ENSNLEG00000029054)	SGTA (ENSNLEG00000002311)	THOP1 (ENSNLEG00000002434)	ZNF554 (ENSNLEG00000027068)	ZNF555 (ENSNLEG00000002452)	ZNF556 (ENSNLEG00000002456)	ENSNLEG00000035301 #13	ZNF77 (ENSNLEG00000002461) #14	TLE6 (ENSNLEG00000002466) #15	ENSNLEG00000002512 #16	ENSNLEG00000032291 #17	ENSNLEG00000002517 #18	GNA15 (ENSNLEG00000028276) #19	NCLN (ENSNLEG00000002535) #20	ENSNLEG00000002553 #21	ENSNLEG00000002563 #22	ENSNLEG00000034914 #23	SMIM44 (ENSNLEG00000029122) #24	ENSNLEG00000030890 #25	ENSNLEG00000029120	FZR1 (ENSNLEG00000002571) #26	ENSNLEG00000033946 #27	ENSNLEG00000002687 #28	GIPC3 (ENSNLEG00000002712) #30	TBXA2R (ENSNLEG00000002715) #31	ENSNLEG00000002565 #32	ENSNLEG00000031233	TJP3 (ENSNLEG00000002720)	APBA3 (ENSNLEG00000002776)	ENSNLEG00000002809	RAX2 (ENSNLEG00000002811)
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213.u.a #29	ENSGT00940000161213.u.b #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Cebidae	ANCESTRAL SPECIES	20	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213.u.a #29	ENSGT00940000161213.u.b #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213.u.a #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Bolivian squirrel monkey	MODERN SPECIES	150	ENSSBOG00000021127	SGTA (ENSSBOG00000032411)	THOP1 (ENSSBOG00000035328)	ZNF554 (ENSSBOG00000031736)	ZNF555 (ENSSBOG00000013346)	ENSSBOG00000018429 ##13	ZNF77 (ENSSBOG00000022293) #14	TLE6 (ENSSBOG00000034568) #15	TLE2 (ENSSBOG00000029407) #16	TLE5 (ENSSBOG00000022171) #17	ENSSBOG00000011100	GNA11 (ENSSBOG00000017439) #18	GNA15 (ENSSBOG00000031168) #19	NCLN (ENSSBOG00000027521) #20	ENSSBOG00000036241	NFIC (ENSSBOG00000031869) #22	SMIM24 (ENSSBOG00000019949) #23	SMIM44 (ENSSBOG00000025422) #24	DOHH (ENSSBOG00000021498) #25	FZR1 (ENSSBOG00000023681) #26	TEKTIP1 (ENSSBOG00000020851) #27	MFSD12 (ENSSBOG00000022502) #28	HMG20B (ENSSBOG00000034086) #29	GIPC3 (ENSSBOG00000021391) #30	CACTIN (ENSSBOG00000034076) #32	PIP5K1C (ENSSBOG00000027787)	TJP3 (ENSSBOG00000035488)	APBA3 (ENSSBOG00000030975)	MRPL54 (ENSSBOG00000028081)	MATK (ENSSBOG00000030884)	ATCAY (ENSSBOG00000031021)
Capuchin	MODERN SPECIES	375	SLC39A3 (ENSCCAG00000022362)	SGTA (ENSCCAG00000023345)	THOP1 (ENSCCAG00000011844)	ZNF554 (ENSCCAG00000031592)	ZNF556 (ENSCCAG00000003367)	ZNF57 (ENSCCAG00000026905) #13	ZNF77 (ENSCCAG00000017871) #14	TLE6 (ENSCCAG00000035104) #15	TLE2 (ENSCCAG00000031140) #16	TLE5 (ENSCCAG00000037181) #17	GNA11 (ENSCCAG00000022709) #18	GNA15 (ENSCCAG00000028488) #19	S1PR4 (ENSCCAG00000019353)	NCLN (ENSCCAG00000034927) #20	ENSCCAG00000028950	NFIC (ENSCCAG00000035238) #22	SMIM24 (ENSCCAG00000032618) #23	SMIM44 (ENSCCAG00000024174) #24	DOHH (ENSCCAG00000018512) #25	ENSCCAG00000025603	FZR1 (ENSCCAG00000031294) #26	C19orf71 (ENSCCAG00000028895) #27	MFSD12 (ENSCCAG00000021716) #28	HMG20B (ENSCCAG00000020130) #29	GIPC3 (ENSCCAG00000035399) #30	TBXA2R (ENSCCAG00000028722) #31	CACTIN (ENSCCAG00000028723) #32	PIP5K1C (ENSCCAG00000019560)	TJP3 (ENSCCAG00000020120)	APBA3 (ENSCCAG00000033704)	MRPL54 (ENSCCAG00000000138)
Mas night monkey	MODERN SPECIES	937	ENSANAG00000029903	DIRAS1 (ENSANAG00000010669)	SLC39A3 (ENSANAG00000036219)	ENSANAG00000029667	THOP1 (ENSANAG00000033301)	ZNF554 (ENSANAG00000033835)	ZNF57 (ENSANAG00000034416) #13	ZNF77 (ENSANAG00000012552) #14	TLE6 (ENSANAG00000025865) #15	TLE2 (ENSANAG00000028611) #16	GNA11 (ENSANAG00000033019) #18	GNA15 (ENSANAG00000029456) #19	S1PR4 (ENSANAG00000010374)	NCLN (ENSANAG00000036906) #20	CELF5 (ENSANAG00000024549)	NFIC (ENSANAG00000036415) #22	ENSANAG00000027655	SMIM44 (ENSANAG00000014595) #24	DOHH (ENSANAG00000036531) #25	FZR1 (ENSANAG00000028463) #26	TEKTIP1 (ENSANAG00000033612) #27	MFSD12 (ENSANAG00000037281) #28	HMG20B (ENSANAG00000020667) #29	TBXA2R (ENSANAG00000009361) #31	CACTIN (ENSANAG00000034680) #32	PIP5K1C (ENSANAG00000036860)	TJP3 (ENSANAG00000028837)	APBA3 (ENSANAG00000034636)	MRPL54 (ENSANAG00000028692)	RAX2 (ENSANAG00000029699)	MATK (ENSANAG00000036207)
Strepsirrhini	ANCESTRAL SPECIES	26	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Lemuriformes	ANCESTRAL SPECIES	22	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Lemuriformes_a	ANCESTRAL SPECIES	17	ENSGT00950000183102.A.a #32	ENSGT01030000234559.a.a.a #31	ENSGT00390000003420.b #30	ENSGT00940000161213 #29	ENSGT00390000005318.a #28	ENSGT00390000004282 #27	ENSGT00950000183104.B.a.a #26	ENSGT00500000044957 #25	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a.g #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00390000003403 #24	ENSGT00940000162830 #14	ENSGT00940000164313	ENSGT00940000163425	ENSGT00940000163560	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000159915	ENSGT01100000263497.E.a.b	ENSGT00950000182964.a.b.b	ENSGT00940000160274	ENSGT00390000014000	ENSGT00940000159993	ENSGT00940000158753
Coquerels sifaka	MODERN SPECIES	348	CACTIN (ENSPCOG00000015989) #32	TBXA2R (ENSPCOG00000015698) #31	GIPC3 (ENSPCOG00000000061) #30	HMG20B (ENSPCOG00000013810) #29	MFSD12 (ENSPCOG00000023032) #28	TEKTIP1 (ENSPCOG00000017742) #27	FZR1 (ENSPCOG00000020160) #26	DOHH (ENSPCOG00000002793) #25	TLE6 (ENSPCOG00000027942) #15	TLE2 (ENSPCOG00000028201) #16	ENSPCOG00000017438 #17	GNA11 (ENSPCOG00000024506) #18	GNA15 (ENSPCOG00000013834) #19	NCLN (ENSPCOG00000024560) #20	CELF5 (ENSPCOG00000011528)	NFIC (ENSPCOG00000027301) #22	SMIM44 (ENSPCOG00000024749) #24	ZNF77 (ENSPCOG00000024746) #14	ZNF57 (ENSPCOG00000018829) #13	ENSPCOG00000020343	ZNF555 (ENSPCOG00000022329)	ZNF554 (ENSPCOG00000002531)	THOP1 (ENSPCOG00000025936)	SGTA (ENSPCOG00000022419)	SLC39A3 (ENSPCOG00000019953)	DIRAS1 (ENSPCOG00000001011)	GNG7 (ENSPCOG00000028462)	GADD45B (ENSPCOG00000013278)	LMNB2 (ENSPCOG00000028250)	TIMM13 (ENSPCOG00000023149)	TMPRSS9 (ENSPCOG00000023380)
Greater bamboo lemur	MODERN SPECIES	353												ENSPSMG00000009779 #19	NCLN (ENSPSMG00000009764) #20	ENSPSMG00000009709	ENSPSMG00000009706	NFIC (ENSPSMG00000009446) #22	SMIM24 (ENSPSMG00000009212) #23	ZNF77 (ENSPSMG00000009202) #14	ENSPSMG00000009195	ZNF556 (ENSPSMG00000009193)	ZNF555 (ENSPSMG00000009189)	ENSPSMG00000009186	THOP1 (ENSPSMG00000009163)	SGTA (ENSPSMG00000009116)	SLC39A3 (ENSPSMG00000009070)	DIRAS1 (ENSPSMG00000009057)	GNG7 (ENSPSMG00000009045)	GADD45B (ENSPSMG00000009032)	LMNB2 (ENSPSMG00000009012)	TIMM13 (ENSPSMG00000008997)	TMPRSS9 (ENSPSMG00000008966)
Mouse lemur	MODERN SPECIES	16	DIRAS1 (ENSMICG00000013418)	SLC39A3 (ENSMICG00000031825)	SGTA (ENSMICG00000013433)	THOP1 (ENSMICG00000031728)	ZNF554 (ENSMICG00000030632)	ZNF555 (ENSMICG00000001516)	ZNF556 (ENSMICG00000043985)	ZNF77 (ENSMICG00000044639) #14	TLE6 (ENSMICG00000003016) #15	TLE2 (ENSMICG00000003029) #16	ENSMICG00000027776 #17	GNA11 (ENSMICG00000032000) #18	GNA15 (ENSMICG00000002977) #19	NCLN (ENSMICG00000007457) #20	CELF5 (ENSMICG00000003506)	NFIC (ENSMICG00000006236) #22	SMIM24 (ENSMICG00000043267) #23	SMIM44 (ENSMICG00000044026) #24	DOHH (ENSMICG00000044244) #25	FZR1 (ENSMICG00000015945) #26	TEKTIP1 (ENSMICG00000043061) #27	MFSD12 (ENSMICG00000026672) #28	HMG20B (ENSMICG00000028142) #29	GIPC3 (ENSMICG00000012665) #30	TBXA2R (ENSMICG00000031426) #31	CACTIN (ENSMICG00000008291) #32	PIP5K1C (ENSMICG00000028246)	TJP3 (ENSMICG00000014731)	APBA3 (ENSMICG00000014756)	MRPL54 (ENSMICG00000034581)	RAX2 (ENSMICG00000014768)
Bushbaby	MODERN SPECIES	144	GNG7 (ENSOGAG00000027288)	DIRAS1 (ENSOGAG00000000372)	SLC39A3 (ENSOGAG00000025858)	SGTA (ENSOGAG00000000374)	THOP1 (ENSOGAG00000000375)	ZNF555 (ENSOGAG00000000383)	ENSOGAG00000002111 ##13	ENSOGAG00000032033 #15	TLE2 (ENSOGAG00000016146) #16	TLE5 (ENSOGAG00000016151) #17	GNA11 (ENSOGAG00000016154) #18	GNA15 (ENSOGAG00000026139) #19	S1PR4 (ENSOGAG00000032004)	NCLN (ENSOGAG00000009302) #20	CELF5 (ENSOGAG00000014161)	NFIC (ENSOGAG00000026321) #22	SMIM24 (ENSOGAG00000027356) #23	DOHH (ENSOGAG00000006502) #25	FZR1 (ENSOGAG00000014162) #26	MFSD12 (ENSOGAG00000014168) #28	HMG20B (ENSOGAG00000014171) #29	GIPC3 (ENSOGAG00000014175) #30	TBXA2R (ENSOGAG00000026948) #31	CACTIN (ENSOGAG00000010382) #32	PIP5K1C (ENSOGAG00000010393)	TJP3 (ENSOGAG00000017146)	APBA3 (ENSOGAG00000017147)	ENSOGAG00000033519	RAX2 (ENSOGAG00000010138)	MATK (ENSOGAG00000004396)	ZFR2 (ENSOGAG00000017150)
Euarchontoglires_A	ANCESTRAL SPECIES	24	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000164313	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00940000164119 #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Glires	ANCESTRAL SPECIES	25	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000164313	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00940000164119 #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00950000182916.a.a #22
Rabbit	DUPLICATION
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	691															ENSOCUG00000030396	ENSOCUG00000033865 #22
Rabbit	MODERN SPECIES	846																ENSOCUG00000037704 #22	ENSOCUG00000025520
Rabbit	MODERN SPECIES	603													ENSOCUG00000038995	ENSOCUG00000038062	ENSOCUG00000032969	ENSOCUG00000038344 #22
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000164313	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00940000164119 #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000164313	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00950000183102.A.a #32	ENSGT01030000234559.a.a.a #31	ENSGT00390000003420.b #30	ENSGT00940000161213 #29	ENSGT00390000005318.a #28	ENSGT00390000004282 #27	ENSGT00950000183104.B.a.a #26	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000159915	ENSGT01100000263497.E.a.b	ENSGT00950000182964.a.b.b	ENSGT00940000160274	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000038150	ENSHGLG00000046105	ENSHGLG00000040749	ENSHGLG00000048735	ENSHGLG00000034788	ENSHGLG00000040549	VN1R1 (ENSHGLG00000046402)	ENSHGLG00000050038	ENSHGLG00000042270	ENSHGLG00000035103	ENSHGLG00000050380	ENSHGLG00000006148	ENSHGLG00000050429	ENSHGLG00000006886	ENSHGLG00000046649	ENSHGLG00000005850 #22	ENSHGLG00000041401	ENSHGLG00000036870 #23	SMIM44 (ENSHGLG00000040448) #24	DOHH (ENSHGLG00000039512) #25	ENSHGLG00000019144	ENSHGLG00000040783	SGTA (ENSHGLG00000018547)	SLC39A3 (ENSHGLG00000033652)	DIRAS1 (ENSHGLG00000013381)	GNG7 (ENSHGLG00000017287)	GADD45B (ENSHGLG00000044805)	ENSHGLG00000015025	DAPK3 (ENSHGLG00000009769)	ENSHGLG00000007881	PIAS4 (ENSHGLG00000006172)
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000159258	ENSGT00950000183102.A.a #32	ENSGT01030000234559.a.a.a #31	ENSGT00390000003420.b #30	ENSGT00940000161213 #29	ENSGT00390000005318.a #28	ENSGT00390000004282 #27	ENSGT00950000183104.B.a.a #26	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000159915	ENSGT01100000263497.E.a.b	ENSGT00950000182964.a.b.b	ENSGT00940000160274	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261
Guinea pig	MODERN SPECIES	395																ENSCPOG00000034808 #22
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00950000183102.A.a #32	ENSGT01030000234559.a.a.a #31	ENSGT00390000003420.b #30	ENSGT00940000161213 #29	ENSGT00390000005318.a #28	ENSGT00390000004282 #27	ENSGT00950000183104.B.a.a #26	ENSGT00950000182965.b.fb	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000159915	ENSGT01100000263497.E.a.b	ENSGT00950000182964.a.b.b	ENSGT00940000160274	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261
Long-tailed chinchilla	MODERN SPECIES	202	CACTIN (ENSCLAG00000010714) #32	TBXA2R (ENSCLAG00000010610) #31	GIPC3 (ENSCLAG00000009638) #30	HMG20B (ENSCLAG00000012030) #29	MFSD12 (ENSCLAG00000008160) #28	TEKTIP1 (ENSCLAG00000009360) #27	FZR1 (ENSCLAG00000014081) #26	ENSCLAG00000014106	TLE2 (ENSCLAG00000007966) #16	TLE5 (ENSCLAG00000015307) #17	GNA11 (ENSCLAG00000010957) #18	GNA15 (ENSCLAG00000009774) #19	S1PR4 (ENSCLAG00000017878)	NCLN (ENSCLAG00000008645) #20	CELF5 (ENSCLAG00000009940)	NFIC (ENSCLAG00000007526) #22	SMIM24 (ENSCLAG00000007177) #23	DOHH (ENSCLAG00000007817) #25	THOP1 (ENSCLAG00000015063)	SGTA (ENSCLAG00000010647)	DIRAS1 (ENSCLAG00000017925)	GNG7 (ENSCLAG00000009115)	GADD45B (ENSCLAG00000008923)	LMNB2 (ENSCLAG00000007920)	DAPK3 (ENSCLAG00000009010)	EEF2 (ENSCLAG00000014112)	PIAS4 (ENSCLAG00000014404)	ZBTB7A (ENSCLAG00000012947)	MAP2K2 (ENSCLAG00000011717)	CREB3L3 (ENSCLAG00000011297)	SIRT6 (ENSCLAG00000008888)
Degu	MODERN SPECIES	91	TBXA2R (ENSODEG00000013384) #31	GIPC3 (ENSODEG00000013296) #30	HMG20B (ENSODEG00000014653) #29	MFSD12 (ENSODEG00000014260) #28	TEKTIP1 (ENSODEG00000013282) #27	FZR1 (ENSODEG00000014514) #26	ENSODEG00000013786	TLE2 (ENSODEG00000014073) #16	ENSODEG00000014482 #17	ENSODEG00000020164	GNA11 (ENSODEG00000015009) #18	GNA15 (ENSODEG00000014085) #19	S1PR4 (ENSODEG00000020319)	NCLN (ENSODEG00000013853) #20	CELF5 (ENSODEG00000014460)	NFIC (ENSODEG00000015267) #22	ENSODEG00000015846 #23	DOHH (ENSODEG00000014181) #25	ENSODEG00000013996	THOP1 (ENSODEG00000013736)	SGTA (ENSODEG00000014332)	SLC39A3 (ENSODEG00000014274)	DIRAS1 (ENSODEG00000020412)	GNG7 (ENSODEG00000014141)	GADD45B (ENSODEG00000014386)	ENSODEG00000014763	DAPK3 (ENSODEG00000014160)	ENSODEG00000014175	PIAS4 (ENSODEG00000015061)	ZBTB7A (ENSODEG00000014027)	MAP2K2 (ENSODEG00000014670)
Sciuridae	ANCESTRAL SPECIES	23	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000164313	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Eurasian red squirrel	MODERN SPECIES	7	ENSSVLG00005022148	GNG7 (ENSSVLG00005022168)	SLC39A3 (ENSSVLG00005022209)	SGTA (ENSSVLG00005022255)	THOP1 (ENSSVLG00005022285)	ZNF556 (ENSSVLG00005022445)	ZNF77 (ENSSVLG00005022489) #14	ENSSVLG00005022518 #15	TLE2 (ENSSVLG00005022632) #16	TLE5 (ENSSVLG00005022954) #17	GNA11 (ENSSVLG00005023021) #18	GNA15 (ENSSVLG00005023052) #19	S1PR4 (ENSSVLG00005023097)	NCLN (ENSSVLG00005023124) #20	CELF5 (ENSSVLG00005023165)	NFIC (ENSSVLG00005023336) #22	ENSSVLG00005023514	DOHH (ENSSVLG00005023586) #25	FZR1 (ENSSVLG00005023633) #26	TEKTIP1 (ENSSVLG00005023668) #27	MFSD12 (ENSSVLG00005023702) #28	HMG20B (ENSSVLG00005023762) #29	GIPC3 (ENSSVLG00005023804) #30	TBXA2R (ENSSVLG00005023817) #31	CACTIN (ENSSVLG00005023836) #32	PIP5K1C (ENSSVLG00005023887)	TJP3 (ENSSVLG00005023962)	MRPL54 (ENSSVLG00005024184)	RAX2 (ENSSVLG00005024207)	MATK (ENSSVLG00005024229)	ZFR2 (ENSSVLG00005024341)
Marmotini	ANCESTRAL SPECIES	24	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000164313	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Squirrel	MODERN SPECIES	188	LMNB2 (ENSSTOG00000027596)	GADD45B (ENSSTOG00000027321)	GNG7 (ENSSTOG00000029016)	DIRAS1 (ENSSTOG00000032129)	SLC39A3 (ENSSTOG00000008404)	SGTA (ENSSTOG00000013262)	THOP1 (ENSSTOG00000006054)	ZNF77 (ENSSTOG00000034105) #14	TLE2 (ENSSTOG00000011134) #16	TLE5 (ENSSTOG00000028243) #17	GNA11 (ENSSTOG00000019951) #18	GNA15 (ENSSTOG00000021930) #19	S1PR4 (ENSSTOG00000024766)	NCLN (ENSSTOG00000022427) #20	CELF5 (ENSSTOG00000002384)	NFIC (ENSSTOG00000024218) #22	SMIM24 (ENSSTOG00000030174) #23	DOHH (ENSSTOG00000023074) #25	FZR1 (ENSSTOG00000002807) #26	TEKTIP1 (ENSSTOG00000026760) #27	MFSD12 (ENSSTOG00000002823) #28	HMG20B (ENSSTOG00000022314) #29	GIPC3 (ENSSTOG00000007215) #30	TBXA2R (ENSSTOG00000028290) #31	CACTIN (ENSSTOG00000001235) #32	PIP5K1C (ENSSTOG00000023021)	TJP3 (ENSSTOG00000024962)	APBA3 (ENSSTOG00000000352)	MRPL54 (ENSSTOG00000022378)	RAX2 (ENSSTOG00000024315)	MATK (ENSSTOG00000011892)
Arctic ground squirrel	MODERN SPECIES	301							ZNF77 (ENSUPAG00010008190) #14	ENSUPAG00010008199 #15	TLE2 (ENSUPAG00010008216) #16	TLE5 (ENSUPAG00010008263) #17	GNA11 (ENSUPAG00010008291) #18	GNA15 (ENSUPAG00010008318) #19	S1PR4 (ENSUPAG00010008324)	NCLN (ENSUPAG00010008331) #20	ENSUPAG00010008374	NFIC (ENSUPAG00010008410) #22	ENSUPAG00010008444 #23	SMIM44 (ENSUPAG00010008452) #24	DOHH (ENSUPAG00010008461) #25	FZR1 (ENSUPAG00010008472) #26	TEKTIP1 (ENSUPAG00010008492) #27	MFSD12 (ENSUPAG00010008498) #28	HMG20B (ENSUPAG00010008513) #29	GIPC3 (ENSUPAG00010008525) #30	TBXA2R (ENSUPAG00010008535) #31	CACTIN (ENSUPAG00010008542) #32	PIP5K1C (ENSUPAG00010008552)	TJP3 (ENSUPAG00010008756)	APBA3 (ENSUPAG00010008831)	MRPL54 (ENSUPAG00010008838)	RAX2 (ENSUPAG00010008848)
Rodentia_B	ANCESTRAL SPECIES	28	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775
Kangaroo rat	MODERN SPECIES	383	Timm13 (ENSDORG00000015661)	Lmnb2 (ENSDORG00000002602)	Gadd45b (ENSDORG00000025421)	Gng7 (ENSDORG00000001766)	Diras1 (ENSDORG00000006599)	Slc39a3 (ENSDORG00000029412)	Sgta (ENSDORG00000009907)	Thop1 (ENSDORG00000008967)	ENSDORG00000025434 #16	Tle5 (ENSDORG00000029584) #17	Gna11 (ENSDORG00000025425) #18	Gna15 (ENSDORG00000008491) #19	S1pr4 (ENSDORG00000029034)	Ncln (ENSDORG00000009779) #20	ENSDORG00000005915 #21	Nfic (ENSDORG00000002466) #22	Smim24 (ENSDORG00000028789) #23	ENSDORG00000024291	Fzr1 (ENSDORG00000012595) #26	ENSDORG00000012596 #27	Mfsd12 (ENSDORG00000012597) #28	ENSDORG00000030007 #29	Gipc3 (ENSDORG00000027124) #30	Tbxa2r (ENSDORG00000004093) #31	Cactin (ENSDORG00000004095) #32	Pip5k1c (ENSDORG00000004096)	Tjp3 (ENSDORG00000009449)	Apba3 (ENSDORG00000005324)	Mrpl54 (ENSDORG00000005326)	Matk (ENSDORG00000005330)	ENSDORG00000009741
Myomorpha	ANCESTRAL SPECIES	27	ENSGT00940000159004	ENSGT00530000063615.a	ENSGT00940000160050	ENSGT00940000159237	ENSGT01000000215054	ENSGT00940000160088	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775
Lesser Egyptian jerboa	MODERN SPECIES	55	Stap2 (ENSJJAG00000019818)	Fsd1 (ENSJJAG00000012326)	Shd (ENSJJAG00000022632)	Yju2 (ENSJJAG00000023448)	Ebi3 (ENSJJAG00000012268)	ENSJJAG00000011418	Sirt6 (ENSJJAG00000016800)	ENSJJAG00000012399 #16	ENSJJAG00000023070 #16	Tle5 (ENSJJAG00000015784) #17	Gna11 (ENSJJAG00000018855) #18	Gna15 (ENSJJAG00000013894) #19	S1pr4 (ENSJJAG00000000603)	Ncln (ENSJJAG00000004276) #20	ENSJJAG00000006902	Nfic (ENSJJAG00000014906) #22	Smim24 (ENSJJAG00000001987) #23	Dohh (ENSJJAG00000023778) #25	Fzr1 (ENSJJAG00000007462) #26	ENSJJAG00000014542 #27	Mfsd12 (ENSJJAG00000023170) #28	Hmg20b (ENSJJAG00000014863) #29	Tbxa2r (ENSJJAG00000015378) #31	Cactin (ENSJJAG00000021015) #32	Pip5k1c (ENSJJAG00000014211)	Tjp3 (ENSJJAG00000020883)	Apba3 (ENSJJAG00000013868)	Mrpl54 (ENSJJAG00000020405)	Matk (ENSJJAG00000017018)	Zfr2 (ENSJJAG00000014635)	Atcay (ENSJJAG00000007757)
Muroidea	ANCESTRAL SPECIES	32	ENSGT00940000159004	ENSGT00530000063615.a	ENSGT00940000160050	ENSGT00940000159237	ENSGT01000000215054	ENSGT00940000160088	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775
Upper Galilee mountains blind mole rat	MODERN SPECIES	975	Shd (ENSNGAG00000003012)	Yju2 (ENSNGAG00000019627)	Ebi3 (ENSNGAG00000023241)	ENSNGAG00000019241	ENSNGAG00000014424	Sirt6 (ENSNGAG00000022728)	ENSNGAG00000022046 #15	ENSNGAG00000009655 #16	ENSNGAG00000019164 #16	Tle5 (ENSNGAG00000023222) #17	Gna11 (ENSNGAG00000018151) #18	Gna15 (ENSNGAG00000022090) #19	S1pr4 (ENSNGAG00000014520)	Ncln (ENSNGAG00000023405) #20	ENSNGAG00000019694	Nfic (ENSNGAG00000021483) #22	Smim24 (ENSNGAG00000020934) #23	Dohh (ENSNGAG00000023202) #25	Fzr1 (ENSNGAG00000019979) #26	Mfsd12 (ENSNGAG00000021286) #28	Hmg20b (ENSNGAG00000022055) #29	Gipc3 (ENSNGAG00000022438) #30	Tbxa2r (ENSNGAG00000023199) #31	Cactin (ENSNGAG00000020699) #32	Pip5k1c (ENSNGAG00000021521)	Tjp3 (ENSNGAG00000001234)	Apba3 (ENSNGAG00000022342)	Mrpl54 (ENSNGAG00000021044)	Matk (ENSNGAG00000021707)	Zfr2 (ENSNGAG00000021831)	Atcay (ENSNGAG00000022622)
Muroidea_A	ANCESTRAL SPECIES	25	ENSGT00940000159004	ENSGT00530000063615.a	ENSGT00940000160050	ENSGT00940000159237	ENSGT01000000215054	ENSGT00940000160088	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775
Cricetidae	ANCESTRAL SPECIES	25	ENSGT00390000007100	ENSGT00940000159004	ENSGT00530000063615.a	ENSGT00940000160050	ENSGT00940000159237.eb	ENSGT00940000160088	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775	ENSGT00940000162148
Cricetinae	ANCESTRAL SPECIES	4						ENSGT00940000153805.q.a.a.a	ENSGT00940000159237.db.a	ENSGT00940000160088	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775	ENSGT00940000162148
Golden Hamster	MODERN SPECIES	764	ENSMAUG00000021079	ENSMAUG00000000940	ENSMAUG00000011554	ENSMAUG00000009986	ENSMAUG00000008197	Sirt6 (ENSMAUG00000021546)	Tle6 (ENSMAUG00000010384) #15	ENSMAUG00000010830 #16	ENSMAUG00000013065 #16	Tle5 (ENSMAUG00000020765) #17	Gna11 (ENSMAUG00000004382) #18	Gna15 (ENSMAUG00000016578) #19	S1pr4 (ENSMAUG00000008594)	Ncln (ENSMAUG00000015425) #20	ENSMAUG00000020336	Nfic (ENSMAUG00000018380) #22	Smim24 (ENSMAUG00000002297) #23	Dohh (ENSMAUG00000008351) #25	Fzr1 (ENSMAUG00000000921) #26	Tektip1 (ENSMAUG00000010716) #27	Mfsd12 (ENSMAUG00000009940) #28	Hmg20b (ENSMAUG00000020413) #29	Gipc3 (ENSMAUG00000021524) #30	Tbxa2r (ENSMAUG00000015276) #31	Cactin (ENSMAUG00000011643) #32	Pip5k1c (ENSMAUG00000014134)	Tjp3 (ENSMAUG00000010092)	Apba3 (ENSMAUG00000007859)	Mrpl54 (ENSMAUG00000009543)	Matk (ENSMAUG00000019712)	Zfr2 (ENSMAUG00000016438)
Chinese hamster chok1gshd	MODERN SPECIES	2	Ddx24 (ENSCGRG00001009522)	ENSCGRG00001004162	ENSCGRG00001000615	ENSCGRG00001015466	ENSCGRG00001014612	Ankrd24 (ENSCGRG00001010168)	Sirt6 (ENSCGRG00001001515)	Tle6 (ENSCGRG00001023857) #15	Tle2 (ENSCGRG00001015962) #16	Tle5 (ENSCGRG00001011131) #17	Gna11 (ENSCGRG00001021073) #18	Gna15 (ENSCGRG00001019244) #19	S1pr4 (ENSCGRG00001009743)	Ncln (ENSCGRG00001014212) #20	ENSCGRG00001002551	Nfic (ENSCGRG00001015960) #22	Smim24 (ENSCGRG00001024709) #23	DOHH (ENSCGRG00001018617) #25	Fzr1 (ENSCGRG00001015616) #26	Tektip1 (ENSCGRG00001012954) #27	Mfsd12 (ENSCGRG00001018366) #28	Hmg20b (ENSCGRG00001016795) #29	Gipc3 (ENSCGRG00001016082) #30	Tbxa2r (ENSCGRG00001014446) #31	Cactin (ENSCGRG00001021287) #32	Pip5k1c (ENSCGRG00001017002)	Tjp3 (ENSCGRG00001001459)	Apba3 (ENSCGRG00001019836)	Mrpl54 (ENSCGRG00001019482)	Matk (ENSCGRG00001015278)	Zfr2 (ENSCGRG00001019870)
Cricetidae_B	ANCESTRAL SPECIES	27	ENSGT00390000007100	ENSGT00940000159004	ENSGT00530000063615.a	ENSGT00940000160050	ENSGT00940000159237.eb	ENSGT00940000160088	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775	ENSGT00940000162148
Prairie vole	MODERN SPECIES	349	ENSMOCG00000007188	ENSMOCG00000006053	ENSMOCG00000012194	ENSMOCG00000017715	ENSMOCG00000002022	ENSMOCG00000016411	Sirt6 (ENSMOCG00000020031)	Tle6 (ENSMOCG00000021233) #15	Tle2 (ENSMOCG00000021122) #16	ENSMOCG00000020375 #17	Gna11 (ENSMOCG00000001264) #18	Gna15 (ENSMOCG00000007607) #19	S1pr4 (ENSMOCG00000001385)	Ncln (ENSMOCG00000010643) #20	ENSMOCG00000005573	Nfic (ENSMOCG00000021133) #22	Smim24 (ENSMOCG00000012959) #23	Dohh (ENSMOCG00000014902) #25	Fzr1 (ENSMOCG00000012552) #26	Tektip1 (ENSMOCG00000017658) #27	Mfsd12 (ENSMOCG00000020987) #28	Hmg20b (ENSMOCG00000001874) #29	Gipc3 (ENSMOCG00000002475) #30	Tbxa2r (ENSMOCG00000005701) #31	Cactin (ENSMOCG00000011992) #32	Pip5k1c (ENSMOCG00000008488)	Tjp3 (ENSMOCG00000013578)	Apba3 (ENSMOCG00000015694)	Mrpl54 (ENSMOCG00000017895)	Matk (ENSMOCG00000001438)	Zfr2 (ENSMOCG00000010727)
Northern American deer mouse	MODERN SPECIES	14	ENSPEMG00000016925	ENSPEMG00000015235	ENSPEMG00000007616	Ankrd24 (ENSPEMG00000023820)	Sirt6 (ENSPEMG00000030025)	ENSPEMG00000015555 #14	Tle6 (ENSPEMG00000023765) #15	Tle2 (ENSPEMG00000023812) #16	Tle5 (ENSPEMG00000022384) #17	Gna11 (ENSPEMG00000020340) #18	Gna15 (ENSPEMG00000022124) #19	S1pr4 (ENSPEMG00000007107)	Ncln (ENSPEMG00000001818) #20	Celf5 (ENSPEMG00000021763)	ENSPEMG00000030211	Nfic (ENSPEMG00000022565) #22	ENSPEMG00000028186	Smim24 (ENSPEMG00000021225) #23	ENSPEMG00000014213 #25	Fzr1 (ENSPEMG00000020284) #26	Tektip1 (ENSPEMG00000029958) #27	Mfsd12 (ENSPEMG00000020766) #28	Hmg20b (ENSPEMG00000014935) #29	Gipc3 (ENSPEMG00000014161) #30	Tbxa2r (ENSPEMG00000015376) #31	Cactin (ENSPEMG00000021732) #32	Pip5k1c (ENSPEMG00000020543)	Tjp3 (ENSPEMG00000021396)	Apba3 (ENSPEMG00000021227)	Mrpl54 (ENSPEMG00000022929)	Matk (ENSPEMG00000020804)
Murinae	ANCESTRAL SPECIES	25	ENSGT00940000153805.q.a.a.b.a.a.a	ENSGT00940000153805.q.a.a.b.a.b	ENSGT00940000153805.q.b.a.a.a.a.a.b.b.b.b	ENSGT00940000153805.q.a.a.b.b	ENSGT00940000159237	ENSGT00940000160088	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775
Rat	MODERN SPECIES	17	Znf624l (ENSRNOG00000069034)	LOC100912294 (ENSRNOG00000066348)	LOC100909682 (ENSRNOG00000064149)	LOC100912294 (ENSRNOG00000064426)	LOC100125368 (ENSRNOG00000068608)	Ankrd24 (ENSRNOG00000006759)	Sirt6 (ENSRNOG00000006393)	Tle6 (ENSRNOG00000006350) #15	Tle2 (ENSRNOG00000005874) #16	Tle5 (ENSRNOG00000052025) #17	Gna11 (ENSRNOG00000005446) #18	Gna15 (ENSRNOG00000005378) #19	S1pr4 (ENSRNOG00000005370)	Ncln (ENSRNOG00000004793) #20	Celf5 (ENSRNOG00000004695)	Nfic (ENSRNOG00000004505) #22	AC094643.2 (ENSRNOG00000053040)	Smim44 (ENSRNOG00000066999) #24	Dohh (ENSRNOG00000004259) #25	Fzr1 (ENSRNOG00000004169) #26	Tektip1 (ENSRNOG00000039861) #27	Mfsd12 (ENSRNOG00000039858) #28	Hmg20b (ENSRNOG00000020601) #29	Tbxa2r (ENSRNOG00000020585) #31	Cactin (ENSRNOG00000039852) #32	Pip5k1c (ENSRNOG00000020577)	Tjp3 (ENSRNOG00000020501)	Apba3 (ENSRNOG00000020466)	Mrpl54 (ENSRNOG00000020464)	Matk (ENSRNOG00000020431)	Zfr2 (ENSRNOG00000020416)
Mus	ANCESTRAL SPECIES	15	ENSGT00940000153805.q.a.a.b.a.a.b	ENSGT00940000153805.q.a.a.a	ENSGT00530000064407.b.b.d.e.b.a	ENSGT00940000153805.q.a.a.b.b	ENSGT00940000159237	ENSGT00940000160088	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775
Shrew mouse	MODERN SPECIES	22	MGP_PahariEiJ_G0031070	AU041133 (MGP_PahariEiJ_G0031069)	MGP_PahariEiJ_G0031068	MGP_PahariEiJ_G0031067	Ankrd24 (MGP_PahariEiJ_G0031066)	Sirt6 (MGP_PahariEiJ_G0031065)	MGP_PahariEiJ_G0031064 #14	MGP_PahariEiJ_G0031063	Tle2 (MGP_PahariEiJ_G0031062) #16	Tle5 (MGP_PahariEiJ_G0031061) #17	Gna11 (MGP_PahariEiJ_G0031060) #18	Gna15 (MGP_PahariEiJ_G0031059) #19	S1pr4 (MGP_PahariEiJ_G0031058)	Ncln (MGP_PahariEiJ_G0031057) #20	Celf5 (MGP_PahariEiJ_G0031056)	Nfic (MGP_PahariEiJ_G0031055) #22	Smim24 (MGP_PahariEiJ_G0031054) #23	MGP_PahariEiJ_G0031053 #25	Fzr1 (MGP_PahariEiJ_G0031052) #26	Tektip1 (MGP_PahariEiJ_G0031051) #27	Mfsd12 (MGP_PahariEiJ_G0031050) #28	Hmg20b (MGP_PahariEiJ_G0031049) #29	Gipc3 (MGP_PahariEiJ_G0031048) #30	Tbxa2r (MGP_PahariEiJ_G0031047) #31	Cactin (MGP_PahariEiJ_G0031046) #32	Pip5k1c (MGP_PahariEiJ_G0031045)	Tjp3 (MGP_PahariEiJ_G0031044)	Apba3 (MGP_PahariEiJ_G0031043)	Mrpl54 (MGP_PahariEiJ_G0031042)	Matk (MGP_PahariEiJ_G0031041)	Zfr2 (MGP_PahariEiJ_G0031040)
Mus_A	ANCESTRAL SPECIES	11	ENSGT00530000064407.b.b.d.e.b.a	ENSGT00940000153805.q.a.a.a	ENSGT00940000153805.q.a.a.b.a.a.a	ENSGT00940000153805.q.a.a.b.a.b	ENSGT00940000159237	ENSGT00940000160088	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a.c.b #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775
Ryukyu mouse	MODERN SPECIES	1	MGP_CAROLIEiJ_G0015657	Zfp873 (MGP_CAROLIEiJ_G0015656)	MGP_CAROLIEiJ_G0015655	MGP_CAROLIEiJ_G0015654	Ankrd24 (MGP_CAROLIEiJ_G0015653)	Sirt6 (MGP_CAROLIEiJ_G0015652)	BC025920 (MGP_CAROLIEiJ_G0015651) #14	MGP_CAROLIEiJ_G0015650	Tle2 (MGP_CAROLIEiJ_G0015649) #16	Tle5 (MGP_CAROLIEiJ_G0015648) #17	Gna11 (MGP_CAROLIEiJ_G0015647) #18	Gna15 (MGP_CAROLIEiJ_G0015646) #19	S1pr4 (MGP_CAROLIEiJ_G0015645)	Ncln (MGP_CAROLIEiJ_G0015644) #20	Celf5 (MGP_CAROLIEiJ_G0015643)	Nfic (MGP_CAROLIEiJ_G0015642) #22	Smim24 (MGP_CAROLIEiJ_G0015641) #23	MGP_CAROLIEiJ_G0015640 #25	Fzr1 (MGP_CAROLIEiJ_G0015639) #26	Tektip1 (MGP_CAROLIEiJ_G0015638) #27	Mfsd12 (MGP_CAROLIEiJ_G0015637) #28	Hmg20b (MGP_CAROLIEiJ_G0015636) #29	Gipc3 (MGP_CAROLIEiJ_G0015635) #30	Tbxa2r (MGP_CAROLIEiJ_G0015634) #31	Cactin (MGP_CAROLIEiJ_G0015633) #32	Pip5k1c (MGP_CAROLIEiJ_G0015632)	Tjp3 (MGP_CAROLIEiJ_G0015631)	Apba3 (MGP_CAROLIEiJ_G0015630)	Mrpl54 (MGP_CAROLIEiJ_G0015629)	Matk (MGP_CAROLIEiJ_G0015628)	Zfr2 (MGP_CAROLIEiJ_G0015627)
Mus_B	ANCESTRAL SPECIES	10	ENSGT00530000064407.b.b.d.e.b.a	ENSGT00940000153805.q.a.a.a	ENSGT00940000153805.q.a.a.b.a.a.a	ENSGT00940000153805.q.a.a.b.a.b	ENSGT00940000159237	ENSGT00940000160088	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a.c.b #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775
Mouse	MODERN SPECIES	1	Gm4767 (ENSMUSG00000094076)	Gm3055 (ENSMUSG00000094622)	Zfp433 (ENSMUSG00000096795)	Gm10778 (ENSMUSG00000096856)	Ankrd24 (ENSMUSG00000054708)	Sirt6 (ENSMUSG00000034748)	BC025920 (ENSMUSG00000074862) #14	Tle6 (ENSMUSG00000034758) #15	Tle2 (ENSMUSG00000034771) #16	Tle5 (ENSMUSG00000054452) #17	Gna11 (ENSMUSG00000034781) #18	Gna15 (ENSMUSG00000034792) #19	S1pr4 (ENSMUSG00000044199)	Ncln (ENSMUSG00000020238) #20	Celf5 (ENSMUSG00000034818)	Nfic (ENSMUSG00000055053) #22	Smim24 (ENSMUSG00000078439) #23	Gm48552 (ENSMUSG00000114004) #24	Gm48551 (ENSMUSG00000113262)	Dohh (ENSMUSG00000078440) #25	Fzr1 (ENSMUSG00000020235) #26	Tektip1 (ENSMUSG00000020234) #27	Mfsd12 (ENSMUSG00000034854) #28	Hmg20b (ENSMUSG00000020232) #29	Gipc3 (ENSMUSG00000034872) #30	Tbxa2r (ENSMUSG00000034881) #31	Cactin (ENSMUSG00000034889) #32	Pip5k1c (ENSMUSG00000034902)	Tjp3 (ENSMUSG00000034917)	Apba3 (ENSMUSG00000004931)	Mrpl54 (ENSMUSG00000034932)
Mus_C	ANCESTRAL SPECIES	7	ENSGT00530000064407.b.b.d.e.b.a	ENSGT00940000153805.q.a.a.a	ENSGT00940000153805.q.a.a.b.a.a.a	ENSGT00940000153805.q.a.a.b.a.b	ENSGT00940000159237	ENSGT00940000160088	ENSGT00940000162830 #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a.c.b #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000160775
spretus	MODERN SPECIES	1	MGP_SPRETEiJ_G0016475	Zfp873 (MGP_SPRETEiJ_G0016474)	MGP_SPRETEiJ_G0016473	MGP_SPRETEiJ_G0016472	Ankrd24 (MGP_SPRETEiJ_G0016471)	Sirt6 (MGP_SPRETEiJ_G0016470)	BC025920 (MGP_SPRETEiJ_G0016469) #14	Tle6 (MGP_SPRETEiJ_G0016468) #15	Tle2 (MGP_SPRETEiJ_G0016467) #16	Tle5 (MGP_SPRETEiJ_G0016466) #17	Gna11 (MGP_SPRETEiJ_G0016465) #18	Gna15 (MGP_SPRETEiJ_G0016464) #19	S1pr4 (MGP_SPRETEiJ_G0016463)	MGP_SPRETEiJ_G0016462 #20	Celf5 (MGP_SPRETEiJ_G0016461)	Nfic (MGP_SPRETEiJ_G0016460) #22	Smim24 (MGP_SPRETEiJ_G0016459) #23	Dohh (MGP_SPRETEiJ_G0016458) #25	Fzr1 (MGP_SPRETEiJ_G0016457) #26	Tektip1 (MGP_SPRETEiJ_G0016456) #27	Mfsd12 (MGP_SPRETEiJ_G0016455) #28	Hmg20b (MGP_SPRETEiJ_G0016454) #29	Gipc3 (MGP_SPRETEiJ_G0016453) #30	Tbxa2r (MGP_SPRETEiJ_G0016452) #31	Cactin (MGP_SPRETEiJ_G0016451) #32	Pip5k1c (MGP_SPRETEiJ_G0016450)	Tjp3 (MGP_SPRETEiJ_G0016449)	Apba3 (MGP_SPRETEiJ_G0016448)	Mrpl54 (MGP_SPRETEiJ_G0016447)	Matk (MGP_SPRETEiJ_G0016446)	Zfr2 (MGP_SPRETEiJ_G0016445)
Steppe mouse	MODERN SPECIES	2590											Gna11 (ENSMSIG00000023685) #18	Gna15 (ENSMSIG00000023707) #19	S1pr4 (ENSMSIG00000023728)	Ncln (ENSMSIG00000023731) #20	ENSMSIG00000023759	ENSMSIG00000023822 #22	Smim24 (ENSMSIG00000023837) #23	Gm48552 (ENSMSIG00000023854) #24	Dohh (ENSMSIG00000023865) #25	ENSMSIG00000023889 #26	Tektip1 (ENSMSIG00000023924) #27	Mfsd12 (ENSMSIG00000023928) #28	Hmg20b (ENSMSIG00000023944) #29	Gipc3 (ENSMSIG00000024007) #30	Tbxa2r (ENSMSIG00000024021) #31	Cactin (ENSMSIG00000024042) #32	Pip5k1c (ENSMSIG00000024074)	Tjp3 (ENSMSIG00000024242)	Apba3 (ENSMSIG00000024307)	ENSMSIG00000024325	Matk (ENSMSIG00000024338)
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830.a.a.b.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00940000164119 #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00950000182755.b.a.a.b.a.a ##13	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.a.b.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000164119 #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.b #14	ENSGT00950000182755.b.a.a.a.b ##13	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000164119 #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.a.b ##13	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Equus	ANCESTRAL SPECIES	34	ENSGT00940000160775	ENSGT00940000163572	ENSGT00390000001201	ENSGT00940000160384	ENSGT00940000160036	ENSGT00940000159258	ENSGT00950000183102.A.a #32	ENSGT00520000060565	ENSGT01030000234559.a.a.a #31	ENSGT00390000003420.b #30	ENSGT00940000161213 #29	ENSGT00390000005318.a #28	ENSGT00390000004282 #27	ENSGT00950000183104.B.a.a #26	ENSGT00500000044957 #25	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00940000154201.a.a.b.d	ENSGT00500000044945.a #20	ENSGT01050000244887.B	ENSGT00940000161736 #19	ENSGT00940000161033 #18	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT00950000182755.b.a.a.a.b ##13	ENSGT00940000162830.a.a.b.a.a.a #14	ENSGT00940000162830.a.a.b.a.a.b #14	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000162830.a.a.b.a.b #14	ENSGT00940000162830.a.a.a #14
Horse	MODERN SPECIES	28	ATCAY (ENSECAG00000015094)	ZFR2 (ENSECAG00000007090)	MATK (ENSECAG00000057591)	RAX2 (ENSECAG00000027953)	TJP3 (ENSECAG00000011885)	APBA3 (ENSECAG00000021308)	PIP5K1C (ENSECAG00000033728)	CACTIN (ENSECAG00000039454) #32	ENSECAG00000051988	TBXA2R (ENSECAG00000038039) #31	ENSECAG00000033958 #29	MFSD12 (ENSECAG00000050601) #28	TEKTIP1 (ENSECAG00000043412) #27	FZR1 (ENSECAG00000016933) #26	DOHH (ENSECAG00000016441) #25	NFIC (ENSECAG00000008134) #22	ENSECAG00000044034 #23	CELF5 (ENSECAG00000018055)	NCLN (ENSECAG00000015197) #20	S1PR4 (ENSECAG00000001851)	GNA11 (ENSECAG00000023654) #18	TLE2 (ENSECAG00000024314) #16	TLE6 (ENSECAG00000022366) #15	ENSECAG00000001472 ##13	ENSECAG00000043972 #14	ENSECAG00000043845 ##13	ENSECAG00000055018 #14	ENSECAG00000033586 #14	ZNF57 (ENSECAG00000032997) #13	ENSECAG00000040891 #14	ENSECAG00000050855
Donkey	MODERN SPECIES	12	ZFR2 (ENSEASG00005022296)	MATK (ENSEASG00005022288)	RAX2 (ENSEASG00005026320)	MRPL54 (ENSEASG00005022283)	APBA3 (ENSEASG00005022276)	TJP3 (ENSEASG00005022268)	PIP5K1C (ENSEASG00005022261)	CACTIN (ENSEASG00005030573) #32	TBXA2R (ENSEASG00005022250) #31	GIPC3 (ENSEASG00005022246) #30	HMG20B (ENSEASG00005022241) #29	MFSD12 (ENSEASG00005022236) #28	TEKTIP1 (ENSEASG00005036506) #27	ENSEASG00005022196 #26	ENSEASG00005022139 #25	ENSEASG00005022128 #22	ENSEASG00005028009 #23	ENSEASG00005022118	NCLN (ENSEASG00005022112) #20	S1PR4 (ENSEASG00005027401)	GNA15 (ENSEASG00005022106) #19	GNA11 (ENSEASG00005030989) #18	TLE5 (ENSEASG00005022089) #17	TLE2 (ENSEASG00005022082) #16	ENSEASG00005036612 #15	ENSEASG00005032268 #14	ENSEASG00005029282 #14	ENSEASG00005022064	ENSEASG00005031905 #14	ENSEASG00005022062 #14	ENSEASG00005022060 #13
Chiroptera	ANCESTRAL SPECIES	31	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00940000162830.a.a.b.a #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Megabat	MODERN SPECIES	999																NFIC (ENSPVAG00000004084) #22	SMIM44 (ENSPVAG00000004085) #24	DOHH (ENSPVAG00000004086) #25	FZR1 (ENSPVAG00000004087) #26	TEKTIP1 (ENSPVAG00000004088) #27	MFSD12 (ENSPVAG00000004089) #28
Microchiroptera	ANCESTRAL SPECIES	30	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00940000162830.a.a.b.a #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Greater horseshoe bat	MODERN SPECIES	9	ZNF555 (ENSRFEG00010008378)	ZNF556 (ENSRFEG00010008289)	ENSRFEG00010008241 #14	ENSRFEG00010008227 #14	ENSRFEG00010008210 #14	ENSRFEG00010008195 ##13	ENSRFEG00010008173 #14	TLE6 (ENSRFEG00010008056) #15	TLE2 (ENSRFEG00010007728) #16	TLE5 (ENSRFEG00010007634) #17	GNA11 (ENSRFEG00010007595) #18	GNA15 (ENSRFEG00010007554) #19	S1PR4 (ENSRFEG00010007509)	NCLN (ENSRFEG00010021024) #20	ENSRFEG00010020980	NFIC (ENSRFEG00010020868) #22	SMIM24 (ENSRFEG00010020808) #23	SMIM44 (ENSRFEG00010020793) #24	DOHH (ENSRFEG00010020783) #25	FZR1 (ENSRFEG00010020757) #26	TEKTIP1 (ENSRFEG00010020734) #27	MFSD12 (ENSRFEG00010020692) #28	HMG20B (ENSRFEG00010020638) #29	GIPC3 (ENSRFEG00010020593) #30	TBXA2R (ENSRFEG00010020570) #31	CACTIN (ENSRFEG00010020557) #32	PIP5K1C (ENSRFEG00010020492)	TJP3 (ENSRFEG00010020437)	APBA3 (ENSRFEG00010020395)	MRPL54 (ENSRFEG00010020373)	RAX2 (ENSRFEG00010020350)
Microbat	MODERN SPECIES	1279	TIMM13 (ENSMLUG00000014659)	LMNB2 (ENSMLUG00000013317)	GADD45B (ENSMLUG00000009419)	GNG7 (ENSMLUG00000029543)	DIRAS1 (ENSMLUG00000002744)	SLC39A3 (ENSMLUG00000014303)	SGTA (ENSMLUG00000010345)	THOP1 (ENSMLUG00000014305)	ENSMLUG00000023178	TLE6 (ENSMLUG00000013752) #15	ENSMLUG00000013756 ##17	GNA11 (ENSMLUG00000006991) #18	ENSMLUG00000007046 #19	NCLN (ENSMLUG00000022540) #20	ENSMLUG00000006471	NFIC (ENSMLUG00000006476) #22	SMIM24 (ENSMLUG00000006483) #23
Carnivora	ANCESTRAL SPECIES	6	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000164918	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000164119 #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Caniformia	ANCESTRAL SPECIES	4	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000164918	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000164119 #21	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00390000003403 #24	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000164918.e	ENSGT01030000234519.e.a.a.b.a.a.a.f #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.b ##17	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00390000003403 #24	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Ursidae	ANCESTRAL SPECIES	20	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000164918.e	ENSGT01030000234519.e.a.a.b.a.a.a.f #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.b ##17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Giant Panda	MODERN SPECIES	14	SGTA (ENSAMEG00000005257)	THOP1 (ENSAMEG00000005314)	ZNF554 (ENSAMEG00000005360)	ENSAMEG00000005363	ZNF555 (ENSAMEG00000005361)	ZNF556 (ENSAMEG00000005362)	ENSAMEG00000029425	TLE6 (ENSAMEG00000005371) #15	TLE2 (ENSAMEG00000005391) #16	ENSAMEG00000029178 ##17	GNA11 (ENSAMEG00000005458) #18	GNA15 (ENSAMEG00000005493) #19	S1PR4 (ENSAMEG00000005495)	NCLN (ENSAMEG00000005496) #20	ENSAMEG00000005527	NFIC (ENSAMEG00000005577) #22	ENSAMEG00000030871	ENSAMEG00000028568 #24	ENSAMEG00000005619 #25	ENSAMEG00000030978 #27	MFSD12 (ENSAMEG00000005668) #28	ENSAMEG00000030856 #29	GIPC3 (ENSAMEG00000005731) #30	ENSAMEG00000028252	TBXA2R (ENSAMEG00000005733) #31	CACTIN (ENSAMEG00000005743) #32	PIP5K1C (ENSAMEG00000005756)	TJP3 (ENSAMEG00000005786)	APBA3 (ENSAMEG00000005876)	MRPL54 (ENSAMEG00000028994)	RAX2 (ENSAMEG00000005914)
Ursus	ANCESTRAL SPECIES	16	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425.c	ENSGT00940000162830.b #14	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000164918.e	ENSGT01030000234519.e.a.a.b.a.a.a.f #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.b ##17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572	ENSGT00940000160775	ENSGT00940000162148
American black bear	MODERN SPECIES	1305													GNA15 (ENSUAMG00000027170) #19	NCLN (ENSUAMG00000027173) #20	CELF5 (ENSUAMG00000027174)	NFIC (ENSUAMG00000027186) #22
Polar bear	MODERN SPECIES	455	SGTA (ENSUMAG00000006851)	THOP1 (ENSUMAG00000006911)	ZNF554 (ENSUMAG00000007110)	ZNF555 (ENSUMAG00000007119)	ENSUMAG00000007135 #14	ENSUMAG00000007139	ENSUMAG00000007151 #14	ENSUMAG00000007158 #13	ENSUMAG00000007167	ENSUMAG00000007190 #16	ENSUMAG00000007194 #16	ENSUMAG00000007196 ##17	GNA11 (ENSUMAG00000007211) #18	GNA15 (ENSUMAG00000007215) #19	ENSUMAG00000007241	NFIC (ENSUMAG00000007265) #22	ENSUMAG00000007296	FZR1 (ENSUMAG00000007307) #26	TEKTIP1 (ENSUMAG00000007354) #27	MFSD12 (ENSUMAG00000007358) #28	ENSUMAG00000007381 #30	ENSUMAG00000007383	ENSUMAG00000007385 #32	PIP5K1C (ENSUMAG00000007390)	MRPL54 (ENSUMAG00000007416)	ENSUMAG00000007421	MATK (ENSUMAG00000007427)	ENSUMAG00000007440	ENSUMAG00000007447	ATCAY (ENSUMAG00000007452)	ENSUMAG00000007459
Mustelinae	ANCESTRAL SPECIES	19	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00950000182755.b.a.a.b.a.b.b.a.a #13	ENSGT00940000164918.e	ENSGT01030000234519.e.a.a.b.a.a.a.f #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.b ##17	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Ferret	MODERN SPECIES	326				ENSMPUG00000003303 #14	ENSMPUG00000003309	ENSMPUG00000003317	TLE6 (ENSMPUG00000003319) #15	ENSMPUG00000003353 #17	ENSMPUG00000003642	GNA11 (ENSMPUG00000003649) #18	GNA15 (ENSMPUG00000003706) #19	S1PR4 (ENSMPUG00000019701)	ENSMPUG00000003708	NCLN (ENSMPUG00000003713) #20	CELF5 (ENSMPUG00000003723)	NFIC (ENSMPUG00000003850) #22	ENSMPUG00000003859	ENSMPUG00000003863 #23	DOHH (ENSMPUG00000003868) #25	ENSMPUG00000019702	FZR1 (ENSMPUG00000003874) #26	MFSD12 (ENSMPUG00000003886) #28	HMG20B (ENSMPUG00000003925) #29	GIPC3 (ENSMPUG00000003985) #30	TBXA2R (ENSMPUG00000004032) #31	CACTIN (ENSMPUG00000004036) #32	PIP5K1C (ENSMPUG00000004050)	TJP3 (ENSMPUG00000004062)	APBA3 (ENSMPUG00000004145)	MRPL54 (ENSMPUG00000004155)	MATK (ENSMPUG00000004170)
American mink	MODERN SPECIES	175	SGTA (ENSNVIG00000005464)	THOP1 (ENSNVIG00000005485)	ZNF554 (ENSNVIG00000005517)	ZNF555 (ENSNVIG00000005522)	ZNF556 (ENSNVIG00000005545)	ENSNVIG00000005559 #13	ENSNVIG00000005595	ENSNVIG00000005725 #15	TLE2 (ENSNVIG00000005768) #16	ENSNVIG00000005979 ##17	GNA11 (ENSNVIG00000006010) #18	GNA15 (ENSNVIG00000006085) #19	S1PR4 (ENSNVIG00000006107)	NCLN (ENSNVIG00000006116) #20	ENSNVIG00000006149 #21	NFIC (ENSNVIG00000006247) #22	CS077 (ENSNVIG00000006275) #23	DOHH (ENSNVIG00000006293) #25	FZR (ENSNVIG00000006305) #26	TEKTIP1 (ENSNVIG00000006395) #27	MFSD12 (ENSNVIG00000006407) #28	HMG20B (ENSNVIG00000006433) #29	GIPC3 (ENSNVIG00000006504) #30	TBXA2R (ENSNVIG00000006523) #31	CACTIN (ENSNVIG00000006539) #32	PIP5K1C (ENSNVIG00000006640)	TJP3 (ENSNVIG00000006858)	APBA3 (ENSNVIG00000006915)	MRPL54 (ENSNVIG00000006941)	RAX2 (ENSNVIG00000006966)	MATK (ENSNVIG00000006982)
Canidae	ANCESTRAL SPECIES		ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00940000164918	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Red fox	MODERN SPECIES	163	ZNF554 (ENSVVUG00000002833)	ZNF555 (ENSVVUG00000002836)	ZNF556 (ENSVVUG00000002841)	ENSVVUG00000002849	ENSVVUG00000002857	ENSVVUG00000002863 #15	TLE2 (ENSVVUG00000002888) #16	ENSVVUG00000002912 ##17	GNA11 (ENSVVUG00000002939) #18	GNA15 (ENSVVUG00000002952) #19	S1PR4 (ENSVVUG00000002968)	NCLN (ENSVVUG00000002992) #20	ENSVVUG00000003242	ENSVVUG00000003246 #21	ENSVVUG00000003252	NFIC (ENSVVUG00000003261) #22	SMIM24 (ENSVVUG00000003269) #23	DOHH (ENSVVUG00000003275) #25	FZR1 (ENSVVUG00000003282) #26	CUNH19orf71 (ENSVVUG00000003289) #27	MFSD12 (ENSVVUG00000003293) #28	HMG20B (ENSVVUG00000003300) #29	GIPC3 (ENSVVUG00000003327) #30	TBXA2R (ENSVVUG00000003357) #31	CACTIN (ENSVVUG00000003362) #32	PIP5K1C (ENSVVUG00000003369)	TJP3 (ENSVVUG00000003419)	APBA3 (ENSVVUG00000004405)	MRPL54 (ENSVVUG00000004420)	RAX2 (ENSVVUG00000004425)	MATK (ENSVVUG00000004432)
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00940000164918	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Dog	MODERN SPECIES	12	SLC39A3 (ENSCAFG00845011490)	SGTA (ENSCAFG00845011392)	THOP1 (ENSCAFG00845011294)	ZNF554 (ENSCAFG00845011258)	ZNF555 (ENSCAFG00845011220)	ZNF556 (ENSCAFG00845011193)	ENSCAFG00845011169	ENSCAFG00845011118 #15	TLE2 (ENSCAFG00845010748) #16	GNA11 (ENSCAFG00845010571) #18	TLE5 (ENSCAFG00845010466) #17	GNA15 (ENSCAFG00845010390) #19	S1PR4 (ENSCAFG00845010367)	NCLN (ENSCAFG00845010334) #20	CELF5 (ENSCAFG00845010202)	NFIC (ENSCAFG00845009756) #22	SMIM24 (ENSCAFG00845009603) #23	DOHH (ENSCAFG00845009508) #25	FZR1 (ENSCAFG00845009377) #26	C20H19orf71 (ENSCAFG00845009301) #27	MFSD12 (ENSCAFG00845009196) #28	ENSCAFG00845009058 #29	GIPC3 (ENSCAFG00845009000) #30	ENSCAFG00845008979	TBXA2R (ENSCAFG00845008905) #31	CACTIN (ENSCAFG00845008863) #32	PIP5K1C (ENSCAFG00845008444)	TJP3 (ENSCAFG00845008169)	APBA3 (ENSCAFG00845008066)	MRPL54 (ENSCAFG00845008032)	RAX2 (ENSCAFG00845008002)
Dingo	MODERN SPECIES	112	SLC39A3 (ENSCAFG00020018206)	SGTA (ENSCAFG00020018207)	THOP1 (ENSCAFG00020018211)	ZNF554 (ENSCAFG00020018214)	ZNF555 (ENSCAFG00020018217)	ZNF556 (ENSCAFG00020018221)	ENSCAFG00020018224	ENSCAFG00020018225	ENSCAFG00020018228 #15	TLE2 (ENSCAFG00020018233) #16	TLE5 (ENSCAFG00020018242) #17	GNA11 (ENSCAFG00020018245) #18	GNA15 (ENSCAFG00020018249) #19	NCLN (ENSCAFG00020018259) #20	CELF5 (ENSCAFG00020018264)	NFIC (ENSCAFG00020018281) #22	ENSCAFG00020018292 #23	DOHH (ENSCAFG00020018295) #25	FZR1 (ENSCAFG00020018296) #26	TEKTIP1 (ENSCAFG00020018300) #27	MFSD12 (ENSCAFG00020018303) #28	HMG20B (ENSCAFG00020018306) #29	GIPC3 (ENSCAFG00020018309) #30	TBXA2R (ENSCAFG00020018318) #31	CACTIN (ENSCAFG00020018320) #32	PIP5K1C (ENSCAFG00020018324)	TJP3 (ENSCAFG00020018326)	APBA3 (ENSCAFG00020018330)	MRPL54 (ENSCAFG00020018333)	RAX2 (ENSCAFG00020018334)	MATK (ENSCAFG00020018336)
Felidae	ANCESTRAL SPECIES	21	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00940000164918	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Cat	MODERN SPECIES	1	ZNF555 (ENSFCAG00000022276)	ENSFCAG00000032030	ENSFCAG00000048662 ##13	ENSFCAG00000052308 #14	ENSFCAG00000052219 #14	ENSFCAG00000050649 #14	ENSFCAG00000035220	TLE6 (ENSFCAG00000013862) #15	TLE2 (ENSFCAG00000013863) #16	TLE5 (ENSFCAG00000039147) #17	GNA11 (ENSFCAG00000044642) #18	GNA15 (ENSFCAG00000007124) #19	S1PR4 (ENSFCAG00000007126)	NCLN (ENSFCAG00000029146) #20	CELF5 (ENSFCAG00000007127)	NFIC (ENSFCAG00000000880) #22	SMIM24 (ENSFCAG00000052509) #23	DOHH (ENSFCAG00000030060) #25	FZR1 (ENSFCAG00000002157) #26	CA2H19orf71 (ENSFCAG00000000882) #27	MFSD12 (ENSFCAG00000000883) #28	HMG20B (ENSFCAG00000026167) #29	GIPC3 (ENSFCAG00000007137) #30	ENSFCAG00000051232	TBXA2R (ENSFCAG00000012120) #31	CACTIN (ENSFCAG00000023235) #32	PIP5K1C (ENSFCAG00000007139)	TJP3 (ENSFCAG00000007142)	APBA3 (ENSFCAG00000019172)	MRPL54 (ENSFCAG00000007144)	RAX2 (ENSFCAG00000040863)
Panthera	ANCESTRAL SPECIES	15	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000164313	ENSGT00940000164918	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Tiger	MODERN SPECIES	54	GNG7 (ENSPTIG00000014250)	DIRAS1 (ENSPTIG00000005639)	SLC39A3 (ENSPTIG00000013803)	SGTA (ENSPTIG00000013472)	THOP1 (ENSPTIG00000012118)	ZNF554 (ENSPTIG00000011725)	ZNF555 (ENSPTIG00000011529)	ZNF556 (ENSPTIG00000011070)	ENSPTIG00000010576	ENSPTIG00000010278 #15	TLE2 (ENSPTIG00000008843) #16	ENSPTIG00000008105 ##17	ENSPTIG00000007808 #18	GNA15 (ENSPTIG00000006851) #19	CELF5 (ENSPTIG00000005338)	NFIC (ENSPTIG00000021743) #22	SMIM24 (ENSPTIG00000021624) #23	FZR1 (ENSPTIG00000021304) #26	HMG20B (ENSPTIG00000021062) #29	GIPC3 (ENSPTIG00000020400) #30	PIP5K1C (ENSPTIG00000018042)	MRPL54 (ENSPTIG00000017727)	ENSPTIG00000015790	ATCAY (ENSPTIG00000013063)	EEF2 (ENSPTIG00000012837)	PIAS4 (ENSPTIG00000012378)	MAP2K2 (ENSPTIG00000010880)	CREB3L3 (ENSPTIG00000008650)	SIRT6 (ENSPTIG00000006083)	ANKRD24 (ENSPTIG00000021988)	EBI3 (ENSPTIG00000021918)
Panthera_a	ANCESTRAL SPECIES								ENSGT00940000164918	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
lion	MODERN SPECIES	215																NFIC (ENSPLOG00000017082) #22	SMIM24 (ENSPLOG00000017196) #23	FZR1 (ENSPLOG00000017310) #26	TEKTIP1 (ENSPLOG00000017373) #27	MFSD12 (ENSPLOG00000017502) #28	HMG20B (ENSPLOG00000017688) #29	GIPC3 (ENSPLOG00000017768) #30	ENSPLOG00000017823	TBXA2R (ENSPLOG00000017840) #31	CACTIN (ENSPLOG00000017867) #32	PIP5K1C (ENSPLOG00000017958)	TJP3 (ENSPLOG00000018107)	APBA3 (ENSPLOG00000018465)	MRPL54 (ENSPLOG00000018509)	RAX2 (ENSPLOG00000018549)	MATK (ENSPLOG00000018581)
leopard	MODERN SPECIES	134							ENSPPRG00000016426	TLE6 (ENSPPRG00000019807) #15	TLE2 (ENSPPRG00000024121) #16	TLE5 (ENSPPRG00000023990) #17	GNA11 (ENSPPRG00000023842) #18	GNA15 (ENSPPRG00000023476) #19	S1PR4 (ENSPPRG00000014630)	NCLN (ENSPPRG00000022717) #20	CELF5 (ENSPPRG00000001514)	NFIC (ENSPPRG00000002102) #22	SMIM24 (ENSPPRG00000002813) #23	SMIM44 (ENSPPRG00000003091) #24	DOHH (ENSPPRG00000003295) #25	FZR1 (ENSPPRG00000004528) #26	TEKTIP1 (ENSPPRG00000004778) #27	MFSD12 (ENSPPRG00000005281) #28	HMG20B (ENSPPRG00000005631) #29	GIPC3 (ENSPPRG00000006047) #30	TBXA2R (ENSPPRG00000006108) #31	CACTIN (ENSPPRG00000007007) #32	PIP5K1C (ENSPPRG00000010065)	TJP3 (ENSPPRG00000011837)	APBA3 (ENSPPRG00000012058)	MRPL54 (ENSPPRG00000012325)	RAX2 (ENSPPRG00000012460)
Artiodactyla	ANCESTRAL SPECIES	23	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000164119 #21	ENSGT00390000011698.c.a.c.b	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036
Suina	ANCESTRAL SPECIES	16	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.a.b #14	ENSGT00940000162830.a.a.a #14	ENSGT00950000182755.b.a.a.b.a.a ##13	ENSGT01070000257262	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Chacoan peccary	MODERN SPECIES	770	DIRAS1 (ENSCWAG00000007888)	SLC39A3 (ENSCWAG00000007922)	SGTA (ENSCWAG00000007961)	THOP1 (ENSCWAG00000008013)	ENSCWAG00000008154	ZNF555 (ENSCWAG00000008231)	ENSCWAG00000008275	ENSCWAG00000008333 #15	TLE2 (ENSCWAG00000008524) #16	TLE5 (ENSCWAG00000009613) #17	GNA11 (ENSCWAG00000009699) #18	GNA15 (ENSCWAG00000009750) #19	S1PR4 (ENSCWAG00000009788)	NCLN (ENSCWAG00000009813) #20	CELF5 (ENSCWAG00000009942)	NFIC (ENSCWAG00000010134) #22	SMIM24 (ENSCWAG00000010463) #23	SMIM44 (ENSCWAG00000010490) #24	DOHH (ENSCWAG00000010524) #25	FZR1 (ENSCWAG00000010574) #26	TEKTIP1 (ENSCWAG00000010670) #27	MFSD12 (ENSCWAG00000010718) #28	HMG20B (ENSCWAG00000010811) #29	GIPC3 (ENSCWAG00000010858) #30	TBXA2R (ENSCWAG00000010917) #31	CACTIN (ENSCWAG00000010950) #32	PIP5K1C (ENSCWAG00000011001)	TJP3 (ENSCWAG00000011084)	APBA3 (ENSCWAG00000011492)	MRPL54 (ENSCWAG00000011519)	RAX2 (ENSCWAG00000011537)
Pig	MODERN SPECIES	10	ZNF554 (ENSSSCG00000038635)	ZNF555 (ENSSSCG00000013469)	ENSSSCG00000039774 ##13	ENSSSCG00000013471 #14	ENSSSCG00000034545 #14	ENSSSCG00000036792	ENSSSCG00000053447	ENSSSCG00000024588 #15	TLE2 (ENSSSCG00000028995) #16	TLE5 (ENSSSCG00000032265) #17	GNA11 (ENSSSCG00000029279) #18	GNA15 (ENSSSCG00000013473) #19	S1PR4 (ENSSSCG00000013474)	NCLN (ENSSSCG00000013475) #20	CELF5 (ENSSSCG00000013476)	NFIC (ENSSSCG00000036537) #22	ENSSSCG00000038067 #23	SMIM44 (ENSSSCG00000049629) #24	DOHH (ENSSSCG00000013478) #25	FZR1 (ENSSSCG00000013481) #26	TEKTIP1 (ENSSSCG00000056892) #27	MFSD12 (ENSSSCG00000026169) #28	HMG20B (ENSSSCG00000040421) #29	GIPC3 (ENSSSCG00000054746) #30	ENSSSCG00000063127	TBXA2R (ENSSSCG00000033759) #31	CACTIN (ENSSSCG00000032085) #32	ENSSSCG00000050486	PIP5K1C (ENSSSCG00000013490)	TJP3 (ENSSSCG00000013491)	APBA3 (ENSSSCG00000013492)
Artiodactyla_a	ANCESTRAL SPECIES	24	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000164119 #21	ENSGT00390000011698.c.a.c.b	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036
Camelidae	ANCESTRAL SPECIES	36	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000164119 #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572
Arabian camel	MODERN SPECIES	14	DIRAS1 (ENSCDRG00005008559)	SLC39A3 (ENSCDRG00005008533)	SGTA (ENSCDRG00005008488)	THOP1 (ENSCDRG00005008423)	ZNF554 (ENSCDRG00005008395)	ZNF555 (ENSCDRG00005008365)	ENSCDRG00005008324 #14	ENSCDRG00005008306 #14	ENSCDRG00005008238 #15	TLE2 (ENSCDRG00005007388) #16	GNA11 (ENSCDRG00005007156) #18	GNA15 (ENSCDRG00005007101) #19	S1PR4 (ENSCDRG00005007083)	NCLN (ENSCDRG00005007008) #20	ENSCDRG00005006802 #21	NFIC (ENSCDRG00005006280) #22	SMIM24 (ENSCDRG00005006203) #23	SMIM44 (ENSCDRG00005006180) #24	DOHH (ENSCDRG00005006155) #25	FZR1 (ENSCDRG00005006089) #26	TEKTIP1 (ENSCDRG00005006055) #27	MFSD12 (ENSCDRG00005005999) #28	HMG20B (ENSCDRG00005005967) #29	GIPC3 (ENSCDRG00005005946) #30	TBXA2R (ENSCDRG00005005933) #31	CACTIN (ENSCDRG00005005904) #32	PIP5K1C (ENSCDRG00005005583)	TJP3 (ENSCDRG00005005310)	APBA3 (ENSCDRG00005005256)	MRPL54 (ENSCDRG00005005240)	RAX2 (ENSCDRG00005005226)
Artiodactyla_b	ANCESTRAL SPECIES	25	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036
Pecora	ANCESTRAL SPECIES		ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036
Yarkand deer	MODERN SPECIES	32	DIRAS1 (ENSCHYG00000004359)	SLC39A3 (ENSCHYG00000004339)	SGTA (ENSCHYG00000004319)	THOP1 (ENSCHYG00000004286)	ZNF554 (ENSCHYG00000004250)	ZNF555 (ENSCHYG00000004235)	ENSCHYG00000004218 #14	TLE6 (ENSCHYG00000004189) #15	ENSCHYG00000004147 #16	ENSCHYG00000004111 ##17	GNA11 (ENSCHYG00000004093) #18	GNA15 (ENSCHYG00000004083) #19	S1PR4 (ENSCHYG00000004078)	NCLN (ENSCHYG00000004043) #20	CELF5 (ENSCHYG00000004001)	NFIC (ENSCHYG00000003885) #22	SMIM24 (ENSCHYG00000003795) #23	ENSCHYG00000003765 #25	FZR1 (ENSCHYG00000003667) #26	ENSCHYG00000003615 #27	MFSD12 (ENSCHYG00000003571) #28	HMG20B (ENSCHYG00000003538) #29	GIPC3 (ENSCHYG00000003521) #30	TBXA2R (ENSCHYG00000003508) #31	CACTIN (ENSCHYG00000003483) #32	PIP5K1C (ENSCHYG00000003264)	TJP3 (ENSCHYG00000003169)	APBA3 (ENSCHYG00000003126)	RAX2 (ENSCHYG00000003107)	MATK (ENSCHYG00000003016)	MRPL54 (ENSCHYG00000002977)
Percora_a	ANCESTRAL SPECIES		ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036
Siberian musk deer	MODERN SPECIES	99	SLC39A3 (ENSMMSG00000001047)	SGTA (ENSMMSG00000001020)	THOP1 (ENSMMSG00000000968)	ZNF554 (ENSMMSG00000000944)	ZNF555 (ENSMMSG00000000926)	ENSMMSG00000000907 #14	ENSMMSG00000000894 #14	ENSMMSG00000000868 #15	TLE2 (ENSMMSG00000000627) #16	TLE5 (ENSMMSG00000000569) #17	GNA11 (ENSMMSG00000000551) #18	GNA15 (ENSMMSG00000000532) #19	S1PR4 (ENSMMSG00000000524)	NCLN (ENSMMSG00000000514) #20	CELF5 (ENSMMSG00000000449)	NFIC (ENSMMSG00000000253) #22	ENSMMSG00000000182	SMIM44 (ENSMMSG00000000172) #24	ENSMMSG00000000156	DOHH (ENSMMSG00000000141) #25	FZR1 (ENSMMSG00000000085) #26	TEKTIP1 (ENSMMSG00000000060) #27	MFSD12 (ENSMMSG00000000043) #28	HMG20B (ENSMMSG00000000025) #29	GIPC3 (ENSMMSG00000023147) #30	TBXA2R (ENSMMSG00000023142) #31	ENSMMSG00000023139	CACTIN (ENSMMSG00000023129) #32	PIP5K1C (ENSMMSG00000023101)	TJP3 (ENSMMSG00000023025)	APBA3 (ENSMMSG00000023004)
Bovidae	ANCESTRAL SPECIES		ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572	ENSGT00940000160775
Goat	MODERN SPECIES	26	SLC39A3 (ENSCHIG00000019215)	SGTA (ENSCHIG00000025763)	THOP1 (ENSCHIG00000013949)	ZNF554 (ENSCHIG00000021466)	ZNF555 (ENSCHIG00000013462)	ENSCHIG00000013771 #14	ENSCHIG00000011999 #14	TLE6 (ENSCHIG00000018660) #15	TLE2 (ENSCHIG00000026991) #16	TLE5 (ENSCHIG00000012967) #17	GNA11 (ENSCHIG00000012068) #18	GNA15 (ENSCHIG00000006621) #19	S1PR4 (ENSCHIG00000012284)	NCLN (ENSCHIG00000021992) #20	CELF5 (ENSCHIG00000004008)	NFIC (ENSCHIG00000015364) #22	SMIM24 (ENSCHIG00000016053) #23	DOHH (ENSCHIG00000023284) #25	FZR1 (ENSCHIG00000014824) #26	MFSD12 (ENSCHIG00000024505) #28	TEKTIP1 (ENSCHIG00000012701) #27	HMG20B (ENSCHIG00000023604) #29	GIPC3 (ENSCHIG00000018804) #30	TBXA2R (ENSCHIG00000012747) #31	CACTIN (ENSCHIG00000026750) #32	PIP5K1C (ENSCHIG00000022491)	TJP3 (ENSCHIG00000017841)	APBA3 (ENSCHIG00000014574)	MRPL54 (ENSCHIG00000026538)	RAX2 (ENSCHIG00000020868)	MATK (ENSCHIG00000014576)
Rambouillet Sheep	MODERN SPECIES	21	DIRAS1 (ENSOARG00020021668)	SLC39A3 (ENSOARG00020021617)	SGTA (ENSOARG00020021585)	THOP1 (ENSOARG00020021465)	ZNF554 (ENSOARG00020021423)	ZNF555 (ENSOARG00020021394)	ENSOARG00020021357	ENSOARG00020021289 #15	TLE2 (ENSOARG00020020198) #16	TLE5 (ENSOARG00020020135) #17	GNA11 (ENSOARG00020020092) #18	GNA15 (ENSOARG00020020045) #19	S1PR4 (ENSOARG00020020029)	NCLN (ENSOARG00020019971) #20	CELF5 (ENSOARG00020019796)	NFIC (ENSOARG00020019406) #22	SMIM24 (ENSOARG00020019336) #23	DOHH (ENSOARG00020019251) #25	FZR1 (ENSOARG00020019125) #26	TEKTIP1 (ENSOARG00020019053) #27	MFSD12 (ENSOARG00020018933) #28	HMG20B (ENSOARG00020018879) #29	GIPC3 (ENSOARG00020018810) #30	TBXA2R (ENSOARG00020018783) #31	CACTIN (ENSOARG00020018654) #32	PIP5K1C (ENSOARG00020017829)	TJP3 (ENSOARG00020017288)	APBA3 (ENSOARG00020017206)	MRPL54 (ENSOARG00020017174)	RAX2 (ENSOARG00020017140)	MATK (ENSOARG00020017085)
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00960000187413	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036
American bison	MODERN SPECIES	3349	GNG7 (ENSBBBG00000023928)	DIRAS1 (ENSBBBG00000023894)	SLC39A3 (ENSBBBG00000000305)	SGTA (ENSBBBG00000023876)	THOP1 (ENSBBBG00000023819)	ZNF554 (ENSBBBG00000023794)	ZNF555 (ENSBBBG00000023789)	ENSBBBG00000023769 #15	TLE2 (ENSBBBG00000023745) #16	TLE5 (ENSBBBG00000023655) #17	GNA11 (ENSBBBG00000006176) #18	GNA15 (ENSBBBG00000006167) #19	S1PR4 (ENSBBBG00000023601)	NCLN (ENSBBBG00000023582) #20	ENSBBBG00000008686	NFIC (ENSBBBG00000023432) #22	SMIM24 (ENSBBBG00000023341) #23	SMIM44 (ENSBBBG00000023332) #24	DOHH (ENSBBBG00000008411) #25	ENSBBBG00000023317	FZR1 (ENSBBBG00000023304) #26	TEKTIP1 (ENSBBBG00000023231) #27	MFSD12 (ENSBBBG00000023220) #28	HMG20B (ENSBBBG00000023190) #29	GIPC3 (ENSBBBG00000000334) #30	TBXA2R (ENSBBBG00000000372) #31	CACTIN (ENSBBBG00000000388) #32	PIP5K1C (ENSBBBG00000000451)	TJP3 (ENSBBBG00000023169)	APBA3 (ENSBBBG00000006868)	MRPL54 (ENSBBBG00000023057)
Bos	ANCESTRAL SPECIES	3	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00960000187413	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163572	ENSGT00940000160775
Wild yak	MODERN SPECIES	144	SLC39A3 (ENSBMUG00000013351)	SGTA (ENSBMUG00000013321)	THOP1 (ENSBMUG00000013288)	ZNF554 (ENSBMUG00000013275)	ZNF555 (ENSBMUG00000013266)	ENSBMUG00000013233 #14	ENSBMUG00000013196 #15	TLE2 (ENSBMUG00000013141) #16	TLE5 (ENSBMUG00000012985) #17	GNA11 (ENSBMUG00000012972) #18	GNA15 (ENSBMUG00000012918) #19	S1PR4 (ENSBMUG00000012890)	NCLN (ENSBMUG00000012866) #20	CELF5 (ENSBMUG00000012845)	ENSBMUG00000012820	NFIC (ENSBMUG00000012806) #22	ENSBMUG00000012785 #23	DOHH (ENSBMUG00000012771) #25	FZR1 (ENSBMUG00000012724) #26	TEKTIP1 (ENSBMUG00000012671) #27	MFSD12 (ENSBMUG00000012651) #28
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	27	SGTA (ENSBGRG00000001178)	ENSBGRG00000001155	THOP1 (ENSBGRG00000001102)	ZNF554 (ENSBGRG00000001093)	ZNF555 (ENSBGRG00000001084)	ENSBGRG00000001060 #14	ENSBGRG00000001055 #14	TLE6 (ENSBGRG00000001034) #15	TLE2 (ENSBGRG00000000857) #16	TLE5 (ENSBGRG00000000793) #17	GNA11 (ENSBGRG00000000769) #18	GNA15 (ENSBGRG00000000748) #19	S1PR4 (ENSBGRG00000000735)	NCLN (ENSBGRG00000000641) #20	CELF5 (ENSBGRG00000000565)	ENSBGRG00000000535 #22	ENSBGRG00000000421 #22	ENSBGRG00000000370 #23	DOHH (ENSBGRG00000021664) #25	FZR1 (ENSBGRG00000021298) #26	TEKTIP1 (ENSBGRG00000021216) #27	MFSD12 (ENSBGRG00000021107) #28	HMG20B (ENSBGRG00000021064) #29	GIPC3 (ENSBGRG00000021004) #30	TBXA2R (ENSBGRG00000020972) #31	CACTIN (ENSBGRG00000020942) #32	PIP5K1C (ENSBGRG00000020521)	TJP3 (ENSBGRG00000019950)	APBA3 (ENSBGRG00000019857)	MRPL54 (ENSBGRG00000019811)	RAX2 (ENSBGRG00000019785)
Domestic yak	MODERN SPECIES	27	ENSBGRG00000001155	THOP1 (ENSBGRG00000001102)	ZNF554 (ENSBGRG00000001093)	ZNF555 (ENSBGRG00000001084)	ENSBGRG00000001060 #14	ENSBGRG00000001055 #14	TLE6 (ENSBGRG00000001034) #15	TLE2 (ENSBGRG00000000857) #16	TLE5 (ENSBGRG00000000793) #17	GNA11 (ENSBGRG00000000769) #18	GNA15 (ENSBGRG00000000748) #19	S1PR4 (ENSBGRG00000000735)	NCLN (ENSBGRG00000000641) #20	CELF5 (ENSBGRG00000000565)	ENSBGRG00000000535 #22	ENSBGRG00000000421 #22	ENSBGRG00000000370 #23	DOHH (ENSBGRG00000021664) #25	FZR1 (ENSBGRG00000021298) #26	TEKTIP1 (ENSBGRG00000021216) #27	MFSD12 (ENSBGRG00000021107) #28	HMG20B (ENSBGRG00000021064) #29	GIPC3 (ENSBGRG00000021004) #30	TBXA2R (ENSBGRG00000020972) #31	CACTIN (ENSBGRG00000020942) #32	PIP5K1C (ENSBGRG00000020521)	TJP3 (ENSBGRG00000019950)	APBA3 (ENSBGRG00000019857)	MRPL54 (ENSBGRG00000019811)	RAX2 (ENSBGRG00000019785)	MATK (ENSBGRG00000019523)
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000185200	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00960000187413	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384
Hybrid Bos Indicus	MODERN SPECIES	26	SLC39A3 (ENSBIXG00005016121)	ENSBIXG00005002558	SGTA (ENSBIXG00005016070)	THOP1 (ENSBIXG00005016046)	ZNF554 (ENSBIXG00005002533)	ZNF555 (ENSBIXG00005015972)	ENSBIXG00005015965 #14	ENSBIXG00005015961 #14	TLE6 (ENSBIXG00005002519) #15	TLE2 (ENSBIXG00005015910) #16	TLE5 (ENSBIXG00005015803) #17	GNA11 (ENSBIXG00005002462) #18	GNA15 (ENSBIXG00005002453) #19	S1PR4 (ENSBIXG00005015709)	NCLN (ENSBIXG00005002433) #20	NFIC (ENSBIXG00005002308) #22	ENSBIXG00005015296	SMIM24 (ENSBIXG00005015291) #23	DOHH (ENSBIXG00005015281) #25	ENSBIXG00005015258	FZR1 (ENSBIXG00005006231) #26	TEKTIP1 (ENSBIXG00005015154) #27	MFSD12 (ENSBIXG00005015129) #28	HMG20B (ENSBIXG00005015091) #29	GIPC3 (ENSBIXG00005002213) #30	TBXA2R (ENSBIXG00005015046) #31	CACTIN (ENSBIXG00005002202) #32	PIP5K1C (ENSBIXG00005014985)	TJP3 (ENSBIXG00005002143)	APBA3 (ENSBIXG00005005496)	MRPL54 (ENSBIXG00005014674)
Cow	MODERN SPECIES	26	THOP1 (ENSBTAG00000020446)	ZNF554 (ENSBTAG00000031352)	ZNF555 (ENSBTAG00000008397)	ENSBTAG00000012868 #14	TLE6 (ENSBTAG00000001152) #15	TLE2 (ENSBTAG00000001153) #16	TLE5 (ENSBTAG00000031363) #17	GNA11 (ENSBTAG00000012181) #18	GNA15 (ENSBTAG00000019988) #19	S1PR4 (ENSBTAG00000000381)	NCLN (ENSBTAG00000020759) #20	CELF5 (ENSBTAG00000021774)	ENSBTAG00000054212 #21	ENSBTAG00000051439	ENSBTAG00000049701	NFIC (ENSBTAG00000008520) #22	ENSBTAG00000054259	SMIM24 (ENSBTAG00000031383) #23	DOHH (ENSBTAG00000005272) #25	ENSBTAG00000051400	FZR1 (ENSBTAG00000031387) #26	TEKTIP1 (ENSBTAG00000014982) #27	MFSD12 (ENSBTAG00000014979) #28	HMG20B (ENSBTAG00000008789) #29	GIPC3 (ENSBTAG00000050809) #30	ENSBTAG00000053812	TBXA2R (ENSBTAG00000014944) #31	CACTIN (ENSBTAG00000010373) #32	PIP5K1C (ENSBTAG00000000710)	TJP3 (ENSBTAG00000018342)	APBA3 (ENSBTAG00000008395)
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000162148	ENSGT00940000160775	ENSGT00940000163572	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b.a #14	ENSGT00940000162830.a.b.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00950000183005.b.d
Blue whale	MODERN SPECIES	14	ZFR2 (ENSBMSG00010006830)	ZNF555 (ENSBMSG00010007047)	ENSBMSG00010007074 #14	ENSBMSG00010007090	ENSBMSG00010007121 #14	ENSBMSG00010007140 #14	ENSBMSG00010007156	ENSBMSG00010007176 #15	TLE2 (ENSBMSG00010007244) #16	TLE5 (ENSBMSG00010007577) #17	GNA11 (ENSBMSG00010007614) #18	GNA15 (ENSBMSG00010007638) #19	S1PR4 (ENSBMSG00010007650)	NCLN (ENSBMSG00010007666) #20	CELF5 (ENSBMSG00010007695)	NFIC (ENSBMSG00010007764) #22	ENSBMSG00010007983 #23	DOHH (ENSBMSG00010008048) #25	FZR1 (ENSBMSG00010008072) #26	MFSD12 (ENSBMSG00010008150) #28	HMG20B (ENSBMSG00010008175) #29	GIPC3 (ENSBMSG00010008191) #30	TBXA2R (ENSBMSG00010008203) #31	CACTIN (ENSBMSG00010008209) #32	PIP5K1C (ENSBMSG00010008234)	TJP3 (ENSBMSG00010008320)	APBA3 (ENSBMSG00010008350)	MRPL54 (ENSBMSG00010008367)	MBD3 (ENSBMSG00010008380)	TCF3 (ENSBMSG00010008426)	ONECUT3 (ENSBMSG00010008489)
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000162148	ENSGT00940000160775	ENSGT00940000163572	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b.a #14	ENSGT00940000162830.a.b.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00950000183005.b.d
Sperm whale	MODERN SPECIES	11	SIRT6 (ENSPCTG00005016278)	CREB3L3 (ENSPCTG00005016528)	PIAS4 (ENSPCTG00005016559)	EEF2 (ENSPCTG00005016617)	DAPK3 (ENSPCTG00005016679)	NMRK2 (ENSPCTG00005016732)	ATCAY (ENSPCTG00005016906)	ENSPCTG00005016973	ENSPCTG00005017007	MATK (ENSPCTG00005017055)	RAX2 (ENSPCTG00005017465)	ENSPCTG00005017499	ZNF555 (ENSPCTG00005017508)	ENSPCTG00005017562 #14	ENSPCTG00005017573 #14	NFIC (ENSPCTG00005017610) #22	SMIM24 (ENSPCTG00005017813) #23	DOHH (ENSPCTG00005017916) #25	ENSPCTG00005017955	TLE5 (ENSPCTG00005018020) #17	TLE2 (ENSPCTG00005018210) #16	PIP5K1C (ENSPCTG00005019009)	ENSPCTG00005019154	ENSPCTG00005019177	APBA3 (ENSPCTG00005019206)	MRPL54 (ENSPCTG00005019236)	MBD3 (ENSPCTG00005019289)	ENSPCTG00005019396	TCF3 (ENSPCTG00005019427)	ONECUT3 (ENSPCTG00005019483)	KLF16 (ENSPCTG00005019503)
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000162148	ENSGT00940000160775	ENSGT00940000163572	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b.a #14	ENSGT00940000162830.a.b.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a.m #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282.d #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00950000183005.b.d
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000162148	ENSGT00940000160775	ENSGT00940000163572	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b.a #14	ENSGT00940000162830.a.b.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a.m #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282.d #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00950000183005.b.d
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00940000162148	ENSGT00940000160775	ENSGT00940000163572	ENSGT00940000163425	ENSGT00940000162830.a.a.a #14	ENSGT00940000162830.a.b.a #14	ENSGT00940000162830.a.b.b #14	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a.m #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161033 #18	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282.d #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00950000183005.b.d
Narwhal	MODERN SPECIES	298	ZFR2 (ENSMMNG00015002202)	MATK (ENSMMNG00015002087)	RAX2 (ENSMMNG00015002052)	ZNF555 (ENSMMNG00015002028)	ENSMMNG00015002004 #14	ENSMMNG00015001988 #14	ENSMMNG00015001966	ENSMMNG00015001925 #15	TLE2 (ENSMMNG00015001829) #16	TLE5 (ENSMMNG00015001757) #17	GNA11 (ENSMMNG00015001728) #18	GNA15 (ENSMMNG00015001704) #19	S1PR4 (ENSMMNG00015001684)	NCLN (ENSMMNG00015001627) #20	CELF5 (ENSMMNG00015001491)	NFIC (ENSMMNG00015001309) #22	SMIM24 (ENSMMNG00015001179) #23	DOHH (ENSMMNG00015001138) #25	FZR1 (ENSMMNG00015001082) #26	TEKTIP1 (ENSMMNG00015001041) #27	MFSD12 (ENSMMNG00015000990) #28	HMG20B (ENSMMNG00015000925) #29	GIPC3 (ENSMMNG00015000888) #30	ENSMMNG00015000865	TBXA2R (ENSMMNG00015000841) #31	CACTIN (ENSMMNG00015000805) #32	PIP5K1C (ENSMMNG00015000718)	TJP3 (ENSMMNG00015000585)	APBA3 (ENSMMNG00015000514)	MRPL54 (ENSMMNG00015000490)	MBD3 (ENSMMNG00015000454)
Beluga whale	MODERN SPECIES	62	RAX2 (ENSDLEG00000020322)	ZNF555 (ENSDLEG00000020325)	ENSDLEG00000020329 #14	ENSDLEG00000020333 #14	ENSDLEG00000020335 #14	ENSDLEG00000020339 #15	ENSDLEG00000020344 #16	ENSDLEG00000020351 #16	AES (ENSDLEG00000020354) #17	GNA11 (ENSDLEG00000020358) #18	GNA15 (ENSDLEG00000020362) #19	S1PR4 (ENSDLEG00000020368)	NCLN (ENSDLEG00000020375) #20	ENSDLEG00000020390	ENSDLEG00000020396	NFIC (ENSDLEG00000020401) #22	ENSDLEG00000020426 #23	DOHH (ENSDLEG00000020431) #25	FZR1 (ENSDLEG00000020434) #26	ENSDLEG00000015356 #27	MFSD12 (ENSDLEG00000015360) #28	HMG20B (ENSDLEG00000015376) #29	GIPC3 (ENSDLEG00000015384) #30	TBXA2R (ENSDLEG00000015397) #31	CACTIN (ENSDLEG00000015406) #32	PIP5K1C (ENSDLEG00000015428)	TJP3 (ENSDLEG00000015460)	APBA3 (ENSDLEG00000015494)	MRPL54 (ENSDLEG00000015510)	MBD3 (ENSDLEG00000015523)	ENSDLEG00000015534
Vaquita	MODERN SPECIES	14	RAX2 (ENSPSNG00000011818)	ZNF555 (ENSPSNG00000011767)	ENSPSNG00000011752 #14	ENSPSNG00000011739 #14	ENSPSNG00000011716 #14	ENSPSNG00000011693	TLE6 (ENSPSNG00000011672) #15	TLE2 (ENSPSNG00000011350) #16	TLE5 (ENSPSNG00000011246) #17	GNA11 (ENSPSNG00000011201) #18	GNA15 (ENSPSNG00000011159) #19	S1PR4 (ENSPSNG00000011138)	NCLN (ENSPSNG00000011058) #20	CELF5 (ENSPSNG00000010809)	SMIM24 (ENSPSNG00000010742) #23	NFIC (ENSPSNG00000010514) #22	DOHH (ENSPSNG00000010352) #25	FZR1 (ENSPSNG00000010251) #26	TEKTIP1 (ENSPSNG00000010156) #27	MFSD12 (ENSPSNG00000009980) #28	HMG20B (ENSPSNG00000009908) #29	GIPC3 (ENSPSNG00000009792) #30	ENSPSNG00000009640	TBXA2R (ENSPSNG00000019240) #31	CACTIN (ENSPSNG00000019192) #32	PIP5K1C (ENSPSNG00000019044)	TJP3 (ENSPSNG00000018690)	APBA3 (ENSPSNG00000018571)	MRPL54 (ENSPSNG00000018508)	MBD3 (ENSPSNG00000018406)	TCF3 (ENSPSNG00000018208)
Dolphin	MODERN SPECIES	1354															CELF5 (ENSTTRG00000009625)	NFIC (ENSTTRG00000009660) #22	SMIM44 (ENSTTRG00000009690) #24	DOHH (ENSTTRG00000009703) #25
Atlantogenata	ANCESTRAL SPECIES	79									ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161736 #19	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT01000000216439	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Xenarthra	ANCESTRAL SPECIES																	ENSGT00950000182916.a.a #22
Sloth	MODERN SPECIES	3470																ENSCHOG00000006447 #22
Armadillo	MODERN SPECIES	3441																NFIC (ENSDNOG00000042450) #22
Afrotheria	ANCESTRAL SPECIES	97								ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161736 #19	ENSGT00940000161033 #18	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT01000000216439	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Tenrec	MODERN SPECIES	3791																NFIC (ENSETEG00000006952) #22
Afrotheria_a	ANCESTRAL SPECIES	101								ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #16	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #17	ENSGT00940000161736 #19	ENSGT00940000161033 #18	ENSGT01050000244887.B	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d	ENSGT00950000182916.a.a #22	ENSGT01000000216439	ENSGT00390000003403 #24	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT00730000111899	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Hyrax	MODERN SPECIES	3109																ENSPCAG00000002205 #22
Elephant	MODERN SPECIES	60										ENSLAFG00000022423 #15	TLE2 (ENSLAFG00000007679) #16	GNA11 (ENSLAFG00000011237) #18	S1PR4 (ENSLAFG00000000780)	NCLN (ENSLAFG00000028713) #20	CELF5 (ENSLAFG00000026387)	NFIC (ENSLAFG00000007134) #22	ENSLAFG00000029999	SMIM44 (ENSLAFG00000026671) #24	DOHH (ENSLAFG00000011920) #25	FZR1 (ENSLAFG00000029400) #26	TEKTIP1 (ENSLAFG00000032270) #27	MFSD12 (ENSLAFG00000031512) #28	HMG20B (ENSLAFG00000007845) #29	GIPC3 (ENSLAFG00000007849) #30	ENSLAFG00000030325	TBXA2R (ENSLAFG00000027874) #31	ENSLAFG00000031774 #32	PIP5K1C (ENSLAFG00000022484)	TJP3 (ENSLAFG00000027222)	APBA3 (ENSLAFG00000015080)	MRPL54 (ENSLAFG00000029657)
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000162014.e.a.b	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT01000000216439	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00390000001450.h.a.b.b	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00940000163917.b
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000162014.e.a.b	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT01000000216439	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00390000001450.h.a.b.b	ENSGT00940000154650.d.f.d.a.a	ENSGT00950000182890.D.c.b.a.a.b.a.a.a	ENSGT00940000160036	ENSGT00940000160384
Tasmanian devil	MODERN SPECIES		ENSSHAG00000024947	ENSSHAG00000004029	ENSSHAG00000022278	ENSSHAG00000003518	TSSK6 (ENSSHAG00000001334)	NDUFA13 (ENSSHAG00000031151)	GATAD2A (ENSSHAG00000013178)	MAU2 (ENSSHAG00000012602)	SUGP1 (ENSSHAG00000012361)	TM6SF2 (ENSSHAG00000012199)	HAPLN4 (ENSSHAG00000012102)	ENSSHAG00000011784	ENSSHAG00000026063	ENSSHAG00000031648	ENSSHAG00000010759	ENSSHAG00000008822 #22	DOHH (ENSSHAG00000008794) #25	FZR1 (ENSSHAG00000007954) #26	MFSD12 (ENSSHAG00000007626) #28	HMG20B (ENSSHAG00000007226) #29	TBXA2R (ENSSHAG00000006677) #31	ENSSHAG00000006050 ##32	PIP5K1C (ENSSHAG00000004499)	ENSSHAG00000027582	ENSSHAG00000030933	ENSSHAG00000030563	ENSSHAG00000024272	TJP3 (ENSSHAG00000001439)	APBA3 (ENSSHAG00000002223)	MRPL54 (ENSSHAG00000002557)	ENSSHAG00000003118
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00940000162014.e.a.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753	ENSGT00390000014856	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT01000000216439	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00390000001450.h.a.b.b	ENSGT00940000154650.d.f.d.a.a	ENSGT00950000182890.D.c.b.a.a.b.a.a.a	ENSGT00940000160036	ENSGT00940000160384
Wallaby	MODERN SPECIES	4923																ENSMEUG00000010629 #22
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00940000162014.e.a.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719	ENSGT00940000160464	ENSGT00390000004097.a	ENSGT00390000012198	ENSGT00410000025695.a	ENSGT00390000012913.a	ENSGT00940000160926	ENSGT00940000158649	ENSGT00390000017748	ENSGT00940000160753.a	ENSGT00390000014856	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT01000000216439	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00390000001450.h.a.b.b	ENSGT00940000154650.d.f.d.a.a	ENSGT00950000182890.D.c.b.a.a.b.a.a.a	ENSGT00940000160036	ENSGT00940000160384
Common wonbat	MODERN SPECIES	580	ENSVURG00010024841	ENSVURG00010024840	CILP2 (ENSVURG00010024838)	YJEFN3 (ENSVURG00010024837)	NDUFA13 (ENSVURG00010024836)	TSSK6 (ENSVURG00010024835)	GATAD2A (ENSVURG00010024834)	SUGP1 (ENSVURG00010024831)	TM6SF2 (ENSVURG00010024830)	HAPLN4 (ENSVURG00010024829)	ENSVURG00010024827	ENSVURG00010024825	RFXANK (ENSVURG00010024824)	BORCS8 (ENSVURG00010024823)	ENSVURG00010024799	ENSVURG00010024784 #22	DOHH (ENSVURG00010024782) #25	FZR1 (ENSVURG00010024780) #26	TEKTIP1 (ENSVURG00010024778) #27	MFSD12 (ENSVURG00010024773) #28	HMG20B (ENSVURG00010024769) #29	GIPC3 (ENSVURG00010024764) #30	TBXA2R (ENSVURG00010024759) #31	ENSVURG00010024755 ##32	PIP5K1C (ENSVURG00010024749)	ENSVURG00010024743	ENSVURG00010024741	ENSVURG00010024739	ENSVURG00010024737	TJP3 (ENSVURG00010024727)	APBA3 (ENSVURG00010024720)
koala	MODERN SPECIES	190	ENSPCIG00000032437	ENSPCIG00000027489	CILP2 (ENSPCIG00000024194)	YJEFN3 (ENSPCIG00000024192)	NDUFA13 (ENSPCIG00000024191)	GATAD2A (ENSPCIG00000024189)	MAU2 (ENSPCIG00000024186)	SUGP1 (ENSPCIG00000031015)	TM6SF2 (ENSPCIG00000024217)	HAPLN4 (ENSPCIG00000024218)	NCAN (ENSPCIG00000024219)	NR2C2AP (ENSPCIG00000024227)	ENSPCIG00000024222	BORCS8 (ENSPCIG00000024230)	ENSPCIG00000024267	ENSPCIG00000025322 #22	ENSPCIG00000033895	DOHH (ENSPCIG00000025326) #25	FZR1 (ENSPCIG00000025330) #26	ENSPCIG00000033355 #27	MFSD12 (ENSPCIG00000025337) #28	HMG20B (ENSPCIG00000025343) #29	GIPC3 (ENSPCIG00000025355) #30	TBXA2R (ENSPCIG00000025359) #31	ENSPCIG00000025362 ##32	ENSPCIG00000025367	ENSPCIG00000035426	ENSPCIG00000014668	ENSPCIG00000032694
Opossum	MODERN SPECIES	2	ENSMODG00000007234	CILP2 (ENSMODG00000007229)	YJEFN3 (ENSMODG00000007212)	NDUFA13 (ENSMODG00000007201)	TSSK6 (ENSMODG00000023787)	GATAD2A (ENSMODG00000007189)	MAU2 (ENSMODG00000007162)	SUGP1 (ENSMODG00000007089)	TM6SF2 (ENSMODG00000007077)	HAPLN4 (ENSMODG00000007055)	ENSMODG00000028358	NR2C2AP (ENSMODG00000047700)	RFXANK (ENSMODG00000007002)	BORCS8 (ENSMODG00000006986)	ENSMODG00000006976	NFIC (ENSMODG00000006935) #22	DOHH (ENSMODG00000006927) #25	FZR1 (ENSMODG00000006919) #26	ENSMODG00000047578 #27	MFSD12 (ENSMODG00000006897) #28	HMG20B (ENSMODG00000006884) #29	ENSMODG00000006869 #30	TBXA2R (ENSMODG00000006844) #31	ENSMODG00000006837 ##32	ENSMODG00000006823	ENSMODG00000050748	ENSMODG00000023793	ENSMODG00000023794	ENSMODG00000006773	ENSMODG00000046640	ENSMODG00000045793
Platypus	MODERN SPECIES	85	CSNK1G2 (ENSOANG00000009333)	BTBD2 (ENSOANG00000041316)	ENSOANG00000042189	ENSOANG00000039838	ABHD17A (ENSOANG00000036622)	ENSOANG00000042009	REXO1 (ENSOANG00000036110)	ENSOANG00000014921	ONECUT3 (ENSOANG00000004576)	TCF3 (ENSOANG00000014335)	UQCR11 (ENSOANG00000003834)	ENSOANG00000003672	MEX3D (ENSOANG00000011764)	ENSOANG00000037185	ENSOANG00000046986	NFIC (ENSOANG00000042636) #22	ENSOANG00000043849	DOHH (ENSOANG00000041341) #25	FZR1 (ENSOANG00000007656) #26	ENSOANG00000015682 #27	ENSOANG00000014325 #28	HMG20B (ENSOANG00000013515) #29	TBXA2R (ENSOANG00000037569) #31	PIP5K1C (ENSOANG00000006295)	TJP3 (ENSOANG00000006294)	APBA3 (ENSOANG00000006293)	ENSOANG00000037708	MATK (ENSOANG00000010674)	ENSOANG00000011220	ATCAY (ENSOANG00000006292)	NMRK2 (ENSOANG00000035130)
Sauria	ANCESTRAL SPECIES	20	ENSGT00940000165800	ENSGT00940000155854	ENSGT00940000163280	ENSGT00950000185823	ENSGT00940000158590	ENSGT00940000155505.b	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00390000018044.b.b	ENSGT00940000163917.b
Lepidosauria	ANCESTRAL SPECIES	33	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000155854	ENSGT00940000163280	ENSGT00950000185823	ENSGT00940000158590	ENSGT00940000155505.b	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00390000018044.b.b	ENSGT00940000163917.b
Episquamata	ANCESTRAL SPECIES	18	ENSGT00950000183110.b.a	ENSGT00940000154355	ENSGT00940000161439	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00950000183102.B ##32	ENSGT01030000234559.a.a.a #31	ENSGT00390000003420.b #30	ENSGT00940000161213 #29	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000165304	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00940000155854	ENSGT00940000163280	ENSGT00950000185823	ENSGT00940000158590	ENSGT00940000155505.b	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00950000183005.b.c	ENSGT01000000214836	ENSGT00950000183005.b.d	ENSGT00940000162613	ENSGT00940000165800	ENSGT00940000162150	ENSGT00940000156470
Laterata	ANCESTRAL SPECIES	37	ENSGT00950000183110.b.a	ENSGT00940000154355	ENSGT00940000161439	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00950000183102.B ##32	ENSGT01030000234559.a.a.a #31	ENSGT00390000003420.b #30	ENSGT00940000161213 #29	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000165304	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00940000155854	ENSGT00940000163280	ENSGT00940000158590	ENSGT00940000160463.e	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT01000000214836	ENSGT00950000183005.b.d	ENSGT00940000162613	ENSGT00940000165800	ENSGT00940000162150	ENSGT00940000156470	ENSGT00940000159179	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a
Argentine black and white tegu	MODERN SPECIES	106		ENSSMRG00000010566	ENSSMRG00000010565	CILP2 (ENSSMRG00000010564)	ENSSMRG00000010563 ##32	TBXA2R (ENSSMRG00000010562) #31	ENSSMRG00000010561 #30	HMG20B (ENSSMRG00000010560) #29	FZR1 (ENSSMRG00000010558) #26	TEKTIP1 (ENSSMRG00000010556) #27	ENSSMRG00000010554	MFSD12 (ENSSMRG00000010553) #28	ENSSMRG00000010551	ENSSMRG00000010549	ENSSMRG00000004021	NFIC (ENSSMRG00000004004) #22	ABHD17A (ENSSMRG00000004000)	KLF16 (ENSSMRG00000003993)	REXO1 (ENSSMRG00000003986)	ENSSMRG00000003975	ENSSMRG00000003970	ENSSMRG00000003958	ONECUT3 (ENSSMRG00000003944)	TCF3 (ENSSMRG00000003939)	MBD3 (ENSSMRG00000003933)	MEX3D (ENSSMRG00000003931)	ENSSMRG00000003845	SCAMP4 (ENSSMRG00000003842)	CSNK1G2 (ENSSMRG00000003837)	BTBD2 (ENSSMRG00000003816)	MKNK2 (ENSSMRG00000003805)
Common wall lizard	MODERN SPECIES	9	ENSPMRG00000020753	ENSPMRG00000020989	ENSPMRG00000020995	ENSPMRG00000021011	ENSPMRG00000021017	ENSPMRG00000021037	CILP2 (ENSPMRG00000021078)	ENSPMRG00000021092 ##32	TBXA2R (ENSPMRG00000021117) #31	ENSPMRG00000021124 #30	HMG20B (ENSPMRG00000021128) #29	FZR1 (ENSPMRG00000021144) #26	ENSPMRG00000021159	DOHH (ENSPMRG00000021166) #25	ENSPMRG00000021682	NFIC (ENSPMRG00000023298) #22	ABHD17A (ENSPMRG00000023302)	ENSPMRG00000023304	REXO1 (ENSPMRG00000023316)	ATP8B3 (ENSPMRG00000023348)	ONECUT3 (ENSPMRG00000023379)	TCF3 (ENSPMRG00000023382)	ENSPMRG00000023385	MBD3 (ENSPMRG00000023387)	MEX3D (ENSPMRG00000023388)	ENSPMRG00000023392	RNF224 (ENSPMRG00000023403)	ENSPMRG00000023405	R3HDM4 (ENSPMRG00000023408)	MED16 (ENSPMRG00000023414)	CFD (ENSPMRG00000023415)
Toxicofera	ANCESTRAL SPECIES	31	ENSGT00940000161721	ENSGT00390000013841	ENSGT00950000183110.b.a	ENSGT00940000154355	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00950000183102.B ##32	ENSGT01030000234559.a.a.a #31	ENSGT00390000003420.b #30	ENSGT00940000161213 #29	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000165304	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00940000155854	ENSGT00940000163280	ENSGT00950000185823	ENSGT00940000158590	ENSGT00940000155505.b	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000165800	ENSGT00940000162150	ENSGT00940000156470	ENSGT00940000159179	ENSGT00940000154587.a.b
Elapidae	ANCESTRAL SPECIES	3	ENSGT00390000013841	ENSGT00950000183110.b.a	ENSGT00940000154355	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00950000183102.B ##32	ENSGT01030000234559.a.a.a #31	ENSGT00390000003420.b #30	ENSGT00940000161213 #29	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00960000190694	ENSGT00940000165304	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00940000155854	ENSGT00940000163280	ENSGT00950000185823	ENSGT00940000158590	ENSGT00940000155505.b	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00990000211571	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000165800	ENSGT00940000162150	ENSGT00940000156470	ENSGT00940000159179
Elapidae_a	ANCESTRAL SPECIES	10	ENSGT00390000013841	ENSGT00950000183110.b.a	ENSGT00940000154355	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00950000183102.B ##32	ENSGT01030000234559.a.a.a #31	ENSGT00390000003420.b #30	ENSGT00940000161213 #29	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00960000190694	ENSGT00940000165304	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00940000155854	ENSGT00940000163280	ENSGT00950000185823	ENSGT00940000158590	ENSGT00940000155505.b	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00990000211571.b	ENSGT00950000183005.b.c	ENSGT00990000211571.a	ENSGT00940000162613	ENSGT00940000165800	ENSGT00940000162150	ENSGT00940000156470
Acanthophiinae	ANCESTRAL SPECIES	13	ENSGT00390000013841	ENSGT00950000183110.b.a	ENSGT00940000154355	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00950000183102.B ##32	ENSGT01030000234559.a.a.a #31	ENSGT00390000003420.b #30	ENSGT00940000161213 #29	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00960000190694	ENSGT00940000165304	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00940000155854	ENSGT00940000163280	ENSGT00950000185823	ENSGT00940000158590	ENSGT00940000155505.b	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00990000211571.b	ENSGT00990000211571.a	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000165800	ENSGT00940000162150	ENSGT00940000156470
Mainland tiger snake	MODERN SPECIES	144												MFSD12 (ENSNSUG00000007078) #28	ENSNSUG00000007079	ENSNSUG00000007080	ENSNSUG00000007081	NFIC (ENSNSUG00000007496) #22	ABHD17A (ENSNSUG00000007499)	KLF16 (ENSNSUG00000007500)	REXO1 (ENSNSUG00000007501)	ENSNSUG00000007515	ATP8B3 (ENSNSUG00000007516)	ONECUT3 (ENSNSUG00000007538)	TCF3 (ENSNSUG00000007539)	ENSNSUG00000007545	ENSNSUG00000007549	MEX3D (ENSNSUG00000007550)	ENSNSUG00000007551	SCAMP4 (ENSNSUG00000008077)	CSNK1G2 (ENSNSUG00000008078)	BTBD2 (ENSNSUG00000008079)	MKNK2 (ENSNSUG00000008080)
Eastern brown snake	MODERN SPECIES	10	FGF22 (ENSPTXG00000002532)	POLR2E (ENSPTXG00000002533)	ARHGAP45 (ENSPTXG00000002541)	CNN2 (ENSPTXG00000002574)	ENSPTXG00000002579	CILP2 (ENSPTXG00000002588)	ENSPTXG00000002591 ##32	TBXA2R (ENSPTXG00000002594) #31	ENSPTXG00000002595 #30	HMG20B (ENSPTXG00000000053) #29	FZR1 (ENSPTXG00000000074) #26	TEKTIP1 (ENSPTXG00000000109) #27	MFSD12 (ENSPTXG00000000131) #28	ENSPTXG00000000152	ENSPTXG00000000414	NFIC (ENSPTXG00000001935) #22	ABHD17A (ENSPTXG00000001937)	KLF16 (ENSPTXG00000001939)	ENSPTXG00000001941	REXO1 (ENSPTXG00000001945)	ENSPTXG00000001948	ENSPTXG00000001950	ONECUT3 (ENSPTXG00000001952)	ENSPTXG00000001953	TCF3 (ENSPTXG00000001955)	ENSPTXG00000001956	ENSPTXG00000001957	MEX3D (ENSPTXG00000001961)	ENSPTXG00000001963	SCAMP4 (ENSPTXG00000001984)	CSNK1G2 (ENSPTXG00000001986)
Blue-lipped sea krait	MODERN SPECIES	2145																NFIC (ENSLLTG00000008001) #22	ABHD17A (ENSLLTG00000008023)
Indian cobra	MODERN SPECIES		POLR2E (ENSNNAG00000012276)	ARHGAP45 (ENSNNAG00000012299)	CNN2 (ENSNNAG00000012412)	YJEFN3 (ENSNNAG00000012438)	CILP2 (ENSNNAG00000012542)	ENSNNAG00000012600 ##32	TBXA2R (ENSNNAG00000012629) #31	ENSNNAG00000012654 #30	HMG20B (ENSNNAG00000012669) #29	FZR1 (ENSNNAG00000012729) #26	TEKTIP1 (ENSNNAG00000012744) #27	MFSD12 (ENSNNAG00000012793) #28	ENSNNAG00000012815	ENSNNAG00000012846	ENSNNAG00000013151	NFIC (ENSNNAG00000000272) #22	ABHD17A (ENSNNAG00000000284)	ENSNNAG00000000301	REXO1 (ENSNNAG00000000312)	ATP8B3 (ENSNNAG00000000342)	ONECUT3 (ENSNNAG00000000374)	TCF3 (ENSNNAG00000000394)	ENSNNAG00000000420	ENSNNAG00000000432	MEX3D (ENSNNAG00000000446)	ENSNNAG00000000480	SCAMP4 (ENSNNAG00000000575)	CSNK1G2 (ENSNNAG00000000601)	BTBD2 (ENSNNAG00000000618)	MKNK2 (ENSNNAG00000000630)	MOB3A (ENSNNAG00000000647)
Lizard	MODERN SPECIES	211																ENSACAG00000007058 #22
tuatara	MODERN SPECIES	632	CSNK1G2 (ENSSPUG00000016074)	SCAMP4 (ENSSPUG00000016062)	ENSSPUG00000015977	ENSSPUG00000015961	ABHD17A (ENSSPUG00000015953)	KLF16 (ENSSPUG00000015949)	REXO1 (ENSSPUG00000015936)	ENSSPUG00000015927	ATP8B3 (ENSSPUG00000015886)	ONECUT3 (ENSSPUG00000015874)	TCF3 (ENSSPUG00000015862)	UQCR11 (ENSSPUG00000015857)	ENSSPUG00000015853	MEX3D (ENSSPUG00000015849)	UNC13A (ENSSPUG00000015816)	NFIC (ENSSPUG00000015778) #22	DOHH (ENSSPUG00000015767) #25	FZR1 (ENSSPUG00000015746) #26	TEKTIP1 (ENSSPUG00000015730) #27	MFSD12 (ENSSPUG00000015627) #28	HMG20B (ENSSPUG00000015595) #29	ENSSPUG00000015524 ##32	PIP5K1C (ENSSPUG00000015473)	TJP3 (ENSSPUG00000015413)	APBA3 (ENSSPUG00000015379)	MRPL54 (ENSSPUG00000015361)	ENSSPUG00000015319	ENSSPUG00000015302
Archelosauria	ANCESTRAL SPECIES	20	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000155854	ENSGT00940000163280	ENSGT00940000158590	ENSGT00940000155505.b	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Cryptodira	ANCESTRAL SPECIES	19	ENSGT00940000159179	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000155854	ENSGT00940000163280	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Testudinoidea	ANCESTRAL SPECIES	39	ENSGT00550000075067	ENSGT00390000015418	ENSGT01050000244898.a.a.a.a	ENSGT00940000154587.a.b	ENSGT00940000159179	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Emydidae	ANCESTRAL SPECIES	14	ENSGT00390000015418	ENSGT01050000244898.a.a.a.a	ENSGT00940000154587.a.b	ENSGT00940000159179	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
painted turtle	MODERN SPECIES	763	ATP8B3 (ENSCPBG00000018487)	ONECUT3 (ENSCPBG00000018480)	ENSCPBG00000018475	ENSCPBG00000018471	ABHD17A (ENSCPBG00000018468)	ENSCPBG00000018462	REXO1 (ENSCPBG00000018456)	TCF3 (ENSCPBG00000018451)	UQCR11 (ENSCPBG00000018448)	ENSCPBG00000018443	MEX3D (ENSCPBG00000018438)	ENSCPBG00000018431	ENSCPBG00000018422	ENSCPBG00000018419	ENSCPBG00000017241	NFIC (ENSCPBG00000017128) #22	DOHH (ENSCPBG00000017126) #25	ENSCPBG00000017125	FZR1 (ENSCPBG00000017124) #26	ENSCPBG00000017123	ENSCPBG00000017122	ENSCPBG00000017121	ENSCPBG00000017119	HMG20B (ENSCPBG00000017118) #29	ENSCPBG00000017117 #30	TBXA2R (ENSCPBG00000017116) #31	ENSCPBG00000017115	ENSCPBG00000017114 ##32	PIP5K1C (ENSCPBG00000017112)	TJP3 (ENSCPBG00000017110)	APBA3 (ENSCPBG00000017105)
Three-toed box turtle	MODERN SPECIES	92	ENSTMTG00000022694	ENSTMTG00000022701	ABHD17A (ENSTMTG00000022703)	ENSTMTG00000022708	ENSTMTG00000022709	REXO1 (ENSTMTG00000022711)	ENSTMTG00000022713	ONECUT3 (ENSTMTG00000022716)	TCF3 (ENSTMTG00000022717)	ENSTMTG00000022724	ENSTMTG00000022725	MEX3D (ENSTMTG00000022729)	ENSTMTG00000022734	ENSTMTG00000022764	ENSTMTG00000022786	NFIC (ENSTMTG00000022787) #22	DOHH (ENSTMTG00000022789) #25	ENSTMTG00000022790	FZR1 (ENSTMTG00000022792) #26	TEKTIP1 (ENSTMTG00000022799) #27	ENSTMTG00000008062	MFSD12 (ENSTMTG00000008079) #28	HMG20B (ENSTMTG00000008113) #29	ENSTMTG00000008123 #30	TBXA2R (ENSTMTG00000008132) #31	ENSTMTG00000008142 ##32	PIP5K1C (ENSTMTG00000008165)	TJP3 (ENSTMTG00000008241)	MRPL54 (ENSTMTG00000008274)	ENSTMTG00000008284	ENSTMTG00000008306
Testudinidae	ANCESTRAL SPECIES	49	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000155854	ENSGT00940000163280	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299.u.b	ENSGT00390000018299.u.a	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00390000018044.b.b	ENSGT00940000163917.b
Abingdon island giant tortoise	MODERN SPECIES	2070						REXO1 (ENSCABG00000002446)	ENSCABG00000002443	ENSCABG00000002440	ONECUT3 (ENSCABG00000002438)	TCF3 (ENSCABG00000002433)	ENSCABG00000002420	ENSCABG00000002416	MEX3D (ENSCABG00000002414)	ENSCABG00000002407	ENSCABG00000002184	NFIC (ENSCABG00000002165) #22
Goode s thornscrub tortoise	MODERN SPECIES	14	SCAMP4 (ENSGEVG00005011640)	ENSGEVG00005011683	ENSGEVG00005012056	ABHD17A (ENSGEVG00005012082)	KLF16 (ENSGEVG00005012101)	REXO1 (ENSGEVG00005012141)	ENSGEVG00005012261	ENSGEVG00005012366	ONECUT3 (ENSGEVG00005012425)	TCF3 (ENSGEVG00005012471)	ENSGEVG00005012591	ENSGEVG00005012619	MEX3D (ENSGEVG00005012665)	ENSGEVG00005012690	ENSGEVG00005013038	NFIC (ENSGEVG00005014577) #22	ENSGEVG00005014641	DOHH (ENSGEVG00005014695) #25	ENSGEVG00005014711	FZR1 (ENSGEVG00005014726) #26	TEKTIP1 (ENSGEVG00005014767) #27	MFSD12 (ENSGEVG00005014847) #28	HMG20B (ENSGEVG00005014871) #29	GIPC3 (ENSGEVG00005014894) #30	TBXA2R (ENSGEVG00005014923) #31	ENSGEVG00005014938 ##32	PIP5K1C (ENSGEVG00005014989)	TJP3 (ENSGEVG00005015129)	APBA3 (ENSGEVG00005015529)	MRPL54 (ENSGEVG00005015567)	ENSGEVG00005015581
Chinese turtle	MODERN SPECIES	445															ENSPSIG00000014388	NFIC (ENSPSIG00000013911) #22	ENSPSIG00000001828	ENSPSIG00000013887	DOHH (ENSPSIG00000013789) #25	ENSPSIG00000001825	FZR1 (ENSPSIG00000011820) #26	MFSD12 (ENSPSIG00000011432) #28	HMG20B (ENSPSIG00000010923) #29	GIPC3 (ENSPSIG00000010821) #30
Archosauria	ANCESTRAL SPECIES	16	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000155854	ENSGT00940000158590	ENSGT00940000155505.b	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Australian saltwater crocodile	MODERN SPECIES	62	ENSCPRG00005011646	CELF5 (ENSCPRG00005011647)	ENSCPRG00005011654	NCLN (ENSCPRG00005011700) #20	S1PR4 (ENSCPRG00005011922)	ENSCPRG00005011928	GNA15 (ENSCPRG00005011933) #19	GNA11 (ENSCPRG00005011942) #18	ENSCPRG00005011947 ##17	ENSCPRG00005011960 ##17	ENSCPRG00005012053 #15	ENSCPRG00005012070	PLPP2 (ENSCPRG00005012077)	ENSCPRG00005012081	ENSCPRG00005012118	NFIC (ENSCPRG00005012131) #22	DOHH (ENSCPRG00005012140) #25	ENSCPRG00005012146	FZR1 (ENSCPRG00005012153) #26	TEKTIP1 (ENSCPRG00005012161) #27	ENSCPRG00005012164	MFSD12 (ENSCPRG00005012178) #28	HMG20B (ENSCPRG00005012188) #29	ENSCPRG00005012192 #30	TBXA2R (ENSCPRG00005012195) #31	ENSCPRG00005012199 ##32	PIP5K1C (ENSCPRG00005012281)	TJP3 (ENSCPRG00005012534)	APBA3 (ENSCPRG00005012719)	MRPL54 (ENSCPRG00005012722)	ENSCPRG00005012729
Aves	ANCESTRAL SPECIES	20	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
African ostrich	MODERN SPECIES	85																NFIC (ENSSCUG00000000207) #22
Neognathae	ANCESTRAL SPECIES	21	ENSGT00940000159179	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Neognathae_b	ANCESTRAL SPECIES	22	ENSGT00940000159179	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT01010000224514	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Neognathae_c	ANCESTRAL SPECIES	24	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000164939	ENSGT00940000156165.l	ENSGT00940000155854	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000155347.b	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT01010000224514	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Golden eagle	MODERN SPECIES	3	ENSACCG00020016302	ENSACCG00020016307	ENSACCG00020016314	ABHD17A (ENSACCG00020016322)	REXO1 (ENSACCG00020016333)	ATP8B3 (ENSACCG00020016385)	ONECUT3 (ENSACCG00020016434)	TCF3 (ENSACCG00020011467)	UQCR11 (ENSACCG00020011517)	ENSACCG00020011539	MEX3D (ENSACCG00020011577)	ENSACCG00020011648	ENSACCG00020011705	ENSACCG00020011729	ENSACCG00020011918	NFIC (ENSACCG00020012082) #22	DOHH (ENSACCG00020012109) #25	ENSACCG00020012129	FZR1 (ENSACCG00020012157) #26	TEKTIP1 (ENSACCG00020012261) #27	MFSD12 (ENSACCG00020012306) #28	HMG20B (ENSACCG00020012330) #29	ENSACCG00020012353 #30	TBXA2R (ENSACCG00020012364) #31	PIP5K1C (ENSACCG00020012477)	TJP3 (ENSACCG00020012618)	APBA3 (ENSACCG00020012658)	MRPL54 (ENSACCG00020012687)	ENSACCG00020012709	ENSACCG00020012751	ENSACCG00020012764
Kakapo	MODERN SPECIES	13															ENSSHBG00005013410	NFIC (ENSSHBG00005013381) #22	ENSSHBG00005013364	DOHH (ENSSHBG00005013357) #25	ENSSHBG00005013349	FZR1 (ENSSHBG00005013339) #26	ENSSHBG00005013326	MFSD12 (ENSSHBG00005013315) #28	HMG20B (ENSSHBG00005013303) #29	GIPC3 (ENSSHBG00005013294) #30	TBXA2R (ENSSHBG00005013287) #31	ENSSHBG00005013279	ENSSHBG00005013272 ##32	PIP5K1C (ENSSHBG00005013262)	TJP3 (ENSSHBG00005013238)	APBA3 (ENSSHBG00005013079)	ENSSHBG00005013048
Passeriformes	ANCESTRAL SPECIES	27	ENSGT00940000159179	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT01010000224514	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00390000018044.b.b
Great tit	MODERN SPECIES	21	CSNK1G2 (ENSPMJG00000010185)	SCAMP4 (ENSPMJG00000010183)	ENSPMJG00000010181	ENSPMJG00000010180	ENSPMJG00000010179	ABHD17A (ENSPMJG00000010178)	REXO1 (ENSPMJG00000010174)	ENSPMJG00000010168	ENSPMJG00000010161	ONECUT3 (ENSPMJG00000010159)	TCF3 (ENSPMJG00000010156)	ENSPMJG00000010155	ENSPMJG00000010147	MEX3D (ENSPMJG00000010140)	ENSPMJG00000004858	NFIC (ENSPMJG00000004825) #22	DOHH (ENSPMJG00000004816) #25	ENSPMJG00000004812	FZR1 (ENSPMJG00000004796) #26	ENSPMJG00000004792	MFSD12 (ENSPMJG00000004783) #28	HMG20B (ENSPMJG00000004780) #29	GIPC3 (ENSPMJG00000004693) #30	TBXA2R (ENSPMJG00000004691) #31	ENSPMJG00000004684 ##32	PIP5K1C (ENSPMJG00000004656)	TJP3 (ENSPMJG00000004633)	APBA3 (ENSPMJG00000004626)	MRPL54 (ENSPMJG00000004616)	ENSPMJG00000004606	ENSPMJG00000004597
Passeriformes_d	ANCESTRAL SPECIES	28	ENSGT00940000159179	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT01010000224514	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00390000018044.b.b
Flycatcher	MODERN SPECIES	20	MKNK2 (ENSFALG00000013750)	BTBD2 (ENSFALG00000013747)	CSNK1G2 (ENSFALG00000013745)	SCAMP4 (ENSFALG00000024926)	ENSFALG00000013742	ENSFALG00000024952	ABHD17A (ENSFALG00000013738)	REXO1 (ENSFALG00000013737)	ATP8B3 (ENSFALG00000013734)	ONECUT3 (ENSFALG00000011399)	TCF3 (ENSFALG00000011409)	UQCR11 (ENSFALG00000011419)	ENSFALG00000011424	MEX3D (ENSFALG00000026265)	ENSFALG00000011460	NFIC (ENSFALG00000011533) #22	ENSFALG00000022936	DOHH (ENSFALG00000011564) #25	ENSFALG00000011571	FZR1 (ENSFALG00000024069) #26	ENSFALG00000011585	MFSD12 (ENSFALG00000011597) #28	HMG20B (ENSFALG00000025880) #29	ENSFALG00000023251 #30	TBXA2R (ENSFALG00000011627) #31	ENSFALG00000011629 ##32	PIP5K1C (ENSFALG00000011633)	TJP3 (ENSFALG00000011640)	ENSFALG00000025032	ENSFALG00000023616	ENSFALG00000011704
Passeriformes_g	ANCESTRAL SPECIES	29	ENSGT00940000159179	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT01100000264330	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT01010000224514	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00390000018044.b.b
Medium ground finch	MODERN SPECIES	144	AP3D1 (ENSGFOG00000011448)	MOB3A (ENSGFOG00000011581)	MKNK2 (ENSGFOG00000011586)	BTBD2 (ENSGFOG00000011590)	CSNK1G2 (ENSGFOG00000011595)	SCAMP4 (ENSGFOG00000011599)	ENSGFOG00000011608	ENSGFOG00000011616	ABHD17A (ENSGFOG00000011621)	REXO1 (ENSGFOG00000011627)	ATP8B3 (ENSGFOG00000011643)	TCF3 (ENSGFOG00000011869)	ENSGFOG00000011894	ENSGFOG00000011901	ENSGFOG00000011913	NFIC (ENSGFOG00000011961) #22	DOHH (ENSGFOG00000011973) #25	ENSGFOG00000011976	FZR1 (ENSGFOG00000011979) #26	MFSD12 (ENSGFOG00000011989) #28	HMG20B (ENSGFOG00000011992) #29	GIPC3 (ENSGFOG00000011999) #30	TBXA2R (ENSGFOG00000012003) #31	ENSGFOG00000012009 ##32	PIP5K1C (ENSGFOG00000012030)	TJP3 (ENSGFOG00000012394)	APBA3 (ENSGFOG00000012404)	MRPL54 (ENSGFOG00000012408)	ENSGFOG00000012410	ENSGFOG00000012415	MATK (ENSGFOG00000012418)
Passeroidea	ANCESTRAL SPECIES	29	ENSGT00940000159179	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT01100000264330	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT01010000224514	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00390000018044.b.b
Common canary	MODERN SPECIES	44	MOB3A (ENSSCAG00000002296)	MKNK2 (ENSSCAG00000002284)	BTBD2 (ENSSCAG00000002272)	CSNK1G2 (ENSSCAG00000002257)	SCAMP4 (ENSSCAG00000002247)	ENSSCAG00000002241	ENSSCAG00000002237	ENSSCAG00000002235	ABHD17A (ENSSCAG00000002228)	REXO1 (ENSSCAG00000002218)	TCF3 (ENSSCAG00000002157)	ENSSCAG00000002149	ENSSCAG00000002147	MEX3D (ENSSCAG00000002143)	UNC13A (ENSSCAG00000001566)	NFIC (ENSSCAG00000001320) #22	ENSSCAG00000001314	DOHH (ENSSCAG00000001308) #25	ENSSCAG00000001302	FZR1 (ENSSCAG00000001289) #26	ENSSCAG00000001281	MFSD12 (ENSSCAG00000001269) #28	HMG20B (ENSSCAG00000001244) #29	ENSSCAG00000001232 #30	TBXA2R (ENSSCAG00000001225) #31	ENSSCAG00000001185 ##32	PIP5K1C (ENSSCAG00000001122)	TJP3 (ENSSCAG00000001080)	APBA3 (ENSSCAG00000001052)	MRPL54 (ENSSCAG00000001032)	ENSSCAG00000001022
Zebra finch	MODERN SPECIES	21	BTBD2 (ENSTGUG00000000274)	CSNK1G2 (ENSTGUG00000014183)	SCAMP4 (ENSTGUG00000027166)	ENSTGUG00000000264	ABHD17A (ENSTGUG00000029122)	REXO1 (ENSTGUG00000000250)	ATP8B3 (ENSTGUG00000000215)	ONECUT3 (ENSTGUG00000000213)	ENSTGUG00000024129	TCF3 (ENSTGUG00000000208)	ENSTGUG00000028830	ENSTGUG00000027738	ENSTGUG00000000202	MEX3D (ENSTGUG00000000201)	ENSTGUG00000000189	NFIC (ENSTGUG00000000182) #22	FZR1 (ENSTGUG00000000181) #26	DOHH (ENSTGUG00000022298) #25	ENSTGUG00000021145	ENSTGUG00000023440	MFSD12 (ENSTGUG00000000177) #28	HMG20B (ENSTGUG00000000169) #29	ENSTGUG00000000168 #30	TBXA2R (ENSTGUG00000000167) #31	ENSTGUG00000000163 ##32	PIP5K1C (ENSTGUG00000000155)	TJP3 (ENSTGUG00000000147)	APBA3 (ENSTGUG00000000142)	MRPL54 (ENSTGUG00000028379)	ENSTGUG00000000138	RAX2 (ENSTGUG00000000137)
Galloanserae	ANCESTRAL SPECIES	20	ENSGT00940000156470	ENSGT00940000162150	ENSGT00940000165800	ENSGT00940000156165.l	ENSGT00940000155854	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000155347.b	ENSGT01030000234573.A.b.b.a	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Phasianidae	ANCESTRAL SPECIES	19	ENSGT00940000155916.h	ENSGT00390000002629	ENSGT00940000162487	ENSGT00940000154201.a.a.b.d	ENSGT00500000044945.a #20	ENSGT01050000244887.B	ENSGT01030000234551.j.b.b	ENSGT01030000234551.j.a	ENSGT00940000161033 #18	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b ##17	ENSGT01030000234519.e.a.a.b.a.a.b.b ##17	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT00940000155885	ENSGT00940000155347.b	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Phasianidae_b	ANCESTRAL SPECIES	20	ENSGT00940000155916.h	ENSGT00390000002629	ENSGT00940000162487	ENSGT00940000154201.a.a.b.d	ENSGT00500000044945.a #20	ENSGT01050000244887.B	ENSGT01030000234551.j.b.b	ENSGT01030000234551.j.a	ENSGT00940000161033 #18	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b ##17	ENSGT01030000234519.e.a.a.b.a.a.b.b ##17	ENSGT01030000234519.e.a.a.b.a.a.a #15	ENSGT00940000155885	ENSGT00940000155347.b	ENSGT00940000154929.B	ENSGT00950000182916.a.a #22	ENSGT00500000044957 #25	ENSGT00940000163250.C	ENSGT00950000183104.B.a.a #26	ENSGT00390000004282 #27	ENSGT00940000165115	ENSGT00390000005318.a #28	ENSGT00940000161213 #29	ENSGT00390000003420.b #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.B ##32	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201
Chicken	MODERN SPECIES	20	HSD11B1L (ENSGALG00010027139)	CELF5 (ENSGALG00010027133)	ENSGALG00010027132	NCLN (ENSGALG00010027129) #20	S1PR4 (ENSGALG00010027127)	ENSGALG00010027126	ENSGALG00010028733	GNA11 (ENSGALG00010027099) #18	ENSGALG00010027173 ##17	ENSGALG00010027170 ##17	ENSGALG00010027165 #15	PLPP2 (ENSGALG00010027154)	ENSGALG00010027144	ENSGALG00010027120	ENSGALG00010028192	NFIC (ENSGALG00010028165) #22	DOHH (ENSGALG00010028156) #25	ENSGALG00010028154	FZR1 (ENSGALG00010028139) #26	TEKTIP1 (ENSGALG00010028135) #27	ENSGALG00010028133	MFSD12 (ENSGALG00010028127) #28	HMG20B (ENSGALG00010028125) #29	GIPC3 (ENSGALG00010028614) #30	TBXA2R (ENSGALG00010028120) #31	ENSGALG00010028117	ENSGALG00010028115 ##32	PIP5K1C (ENSGALG00010028113)	TJP3 (ENSGALG00010028109)	APBA3 (ENSGALG00010028103)	MRPL54 (ENSGALG00010028101)
Japanese quail	MODERN SPECIES	20	MICOS13 (ENSCJPG00005009764)	HSD11B1L (ENSCJPG00005009762)	CELF5 (ENSCJPG00005009760)	ENSCJPG00005009758	NCLN (ENSCJPG00005009756) #20	S1PR4 (ENSCJPG00005009755)	ENSCJPG00005009736	GNA11 (ENSCJPG00005009735) #18	ENSCJPG00005009732 ##17	ENSCJPG00005009720 ##17	ENSCJPG00005009719	ENSCJPG00005009718 #15	PLPP2 (ENSCJPG00005009717)	ENSCJPG00005009716	ENSCJPG00005006208	NFIC (ENSCJPG00005006181) #22	ENSCJPG00005006177	ENSCJPG00005006176	FZR1 (ENSCJPG00005006175) #26	ENSCJPG00005006174	MFSD12 (ENSCJPG00005006173) #28	HMG20B (ENSCJPG00005006172) #29	GIPC3 (ENSCJPG00005006171) #30	TBXA2R (ENSCJPG00005006170) #31	ENSCJPG00005006165 ##32	TJP3 (ENSCJPG00005006163)	ENSCJPG00005006161	ENSCJPG00005006160	ENSCJPG00005006159	ENSCJPG00005006158	ENSCJPG00005006157
Anatidae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.a #22
Pink-footed goose	MODERN SPECIES	611																NFIC (ENSABRG00000020909) #22
Duck	MODERN SPECIES	1952																NFIC (ENSAPLG00000023294) #22
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	334	TNFAIP8L1 (ENSLACG00000017862)	MYDGF (ENSLACG00000017834)	ENSLACG00000017821	DPP9 (ENSLACG00000017779)	FEM1A (ENSLACG00000017622)	ENSLACG00000017601	REXO1 (ENSLACG00000017555)	ATP8B3 (ENSLACG00000017414)	ONECUT3 (ENSLACG00000017269)	TCF3 (ENSLACG00000016589)	UQCR11 (ENSLACG00000016539)	mbd3a (ENSLACG00000016498)	MEX3D (ENSLACG00000016407)	mbd3b (ENSLACG00000016232)	ENSLACG00000015658	ENSLACG00000014913 #22	ENSLACG00000013978 #22	HCN2 (ENSLACG00000012418)	POLRMT (ENSLACG00000011518)	FGF22 (ENSLACG00000010370)	RNF126 (ENSLACG00000009793)	FSTL3 (ENSLACG00000009422)	ENSLACG00000008682	ENSLACG00000008512	ENSLACG00000022351	PALM (ENSLACG00000005984)	ENSLACG00000005165	PTBP1 (ENSLACG00000003632)	ENSLACG00000003054	PLPPR3 (ENSLACG00000001511)
Coelacanth	MODERN SPECIES	334	MYDGF (ENSLACG00000017834)	ENSLACG00000017821	DPP9 (ENSLACG00000017779)	FEM1A (ENSLACG00000017622)	ENSLACG00000017601	REXO1 (ENSLACG00000017555)	ATP8B3 (ENSLACG00000017414)	ONECUT3 (ENSLACG00000017269)	TCF3 (ENSLACG00000016589)	UQCR11 (ENSLACG00000016539)	mbd3a (ENSLACG00000016498)	MEX3D (ENSLACG00000016407)	mbd3b (ENSLACG00000016232)	ENSLACG00000015658	ENSLACG00000014913 #22	ENSLACG00000013978 #22	HCN2 (ENSLACG00000012418)	POLRMT (ENSLACG00000011518)	FGF22 (ENSLACG00000010370)	RNF126 (ENSLACG00000009793)	FSTL3 (ENSLACG00000009422)	ENSLACG00000008682	ENSLACG00000008512	ENSLACG00000022351	PALM (ENSLACG00000005984)	ENSLACG00000005165	PTBP1 (ENSLACG00000003632)	ENSLACG00000003054	PLPPR3 (ENSLACG00000001511)
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a ##22
Gnathostomata	ANCESTRAL SPECIES	55	ENSGT00940000156945	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00940000157721	ENSGT00410000029447	ENSGT00940000165489	ENSGT00940000174128.C	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00940000171673	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000159889	ENSGT00390000007310	ENSGT00940000163540	ENSGT00940000162270	ENSGT00940000157140.b.a.b.a	ENSGT00940000161273	ENSGT00940000165232	ENSGT00940000157546	ENSGT00530000063821.b.a	ENSGT00940000155042	ENSGT00940000157399
Elephant shark	MODERN SPECIES	1597	ENSCMIG00000019480	c8b (ENSCMIG00000019477)	ENSCMIG00000019476	ENSCMIG00000019471	mysm1 (ENSCMIG00000019466)	ENSCMIG00000019464	ENSCMIG00000019462	ENSCMIG00000019458	jun (ENSCMIG00000019457)	fggy (ENSCMIG00000019450)	ENSCMIG00000019442	hook1 (ENSCMIG00000019441)	ENSCMIG00000019438	ENSCMIG00000019434	frem1b (ENSCMIG00000019432)	nfia (ENSCMIG00000019423) ##22	tm2d1 (ENSCMIG00000019416)	PATJ (ENSCMIG00000019399)	ENSCMIG00000019386	tal1 (ENSCMIG00000019384)	stil (ENSCMIG00000019380)	cmpk (ENSCMIG00000019378)	foxe3 (ENSCMIG00000019375)	ENSCMIG00000019373	TRABD2B (ENSCMIG00000019370)	ENSCMIG00000019364	zgc:171480 (ENSCMIG00000019361)	slc5a9 (ENSCMIG00000019236)	ENSCMIG00000019181	agbl4 (ENSCMIG00000019163)	elavl4 (ENSCMIG00000019132)
Euteleostomi	ANCESTRAL SPECIES	48	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00940000157721	ENSGT00410000029447	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00940000171673	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000154660.b ##23	ENSGT00940000159889	ENSGT00390000007310	ENSGT00940000163540	ENSGT00940000162270	ENSGT00940000157140.b.a.b.a	ENSGT00940000161273	ENSGT00940000165232	ENSGT00940000157546	ENSGT00530000063821.b.a	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00940000155042.a.b
Actinopterygii	ANCESTRAL SPECIES	189														ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01040000244250	ENSGT00940000159889.b.b	ENSGT00390000007310	ENSGT00940000165232	ENSGT00940000157546	ENSGT00530000063821.a	ENSGT00940000155042.a.a	ENSGT00940000157399	ENSGT00940000161649	ENSGT00940000154831	ENSGT00940000160194	ENSGT00730000110988	ENSGT00950000182917.a.b.a
Reedfish	MODERN SPECIES	1						ENSECRG00000011364	ENSECRG00000011337	zbtb37 (ENSECRG00000011280)	serpinc1 (ENSECRG00000009998)	rc3h1a (ENSECRG00000009981)	GPR52 (ENSECRG00000009965)	RABGAP1L (ENSECRG00000009946)	atpaf1 (ENSECRG00000009928)	ENSECRG00000009916	frem1b (ENSECRG00000009851)	nfia (ENSECRG00000009794) ##22	tm2d1 (ENSECRG00000009762)	PATJ (ENSECRG00000009615)	ENSECRG00000009566	tal1 (ENSECRG00000009558)	stil (ENSECRG00000009542)	zgc:171480 (ENSECRG00000009525)	slc5a9 (ENSECRG00000009464)	spata6 (ENSECRG00000009395)	AGBL4 (ENSECRG00000009373)	bend5 (ENSECRG00000009353)	agbl4 (ENSECRG00000009332)	elavl4 (ENSECRG00000009035)	ENSECRG00000008927	dmrta2 (ENSECRG00000008913)	faf1 (ENSECRG00000008876)
Neopterygii	ANCESTRAL SPECIES	231								ENSGT00390000005554	ENSGT01030000234614.B.b	ENSGT00940000159902	ENSGT00940000159228	ENSGT00940000163422	ENSGT00940000154611	ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01040000244250	ENSGT00940000159889.b.b	ENSGT00900000141021.a	ENSGT00940000157639	ENSGT00390000013003
Spotted gar	MODERN SPECIES	648	dnttip2 (ENSLOCG00000009635)	gclm (ENSLOCG00000009650)	slc5a9 (ENSLOCG00000009664)	ENSLOCG00000009682	ENSLOCG00000009719	soat1 (ENSLOCG00000009767)	abl2 (ENSLOCG00000009782)	tor3a (ENSLOCG00000009789)	osbpl9 (ENSLOCG00000009802)	xpr1a (ENSLOCG00000009831)	ENSLOCG00000009849	nrd1b (ENSLOCG00000009851)	ENSLOCG00000009886	ENSLOCG00000009890	frem1b (ENSLOCG00000009896)	nfia (ENSLOCG00000009919) ##22	tm2d1 (ENSLOCG00000009936)	PATJ (ENSLOCG00000009943)	tal1 (ENSLOCG00000009966)	ier5 (ENSLOCG00000017746)	stx6 (ENSLOCG00000009973)	ENSLOCG00000009981	zranb2 (ENSLOCG00000010010)	PTGER3 (ENSLOCG00000010015) ##31	cthl (ENSLOCG00000010025)	ankrd13c (ENSLOCG00000010043)	rpf1 (ENSLOCG00000010053)	gng5 (ENSLOCG00000010068)	SPATA1 (ENSLOCG00000010073)	ctbs (ENSLOCG00000010081)	ENSLOCG00000010091
Osteoglossocephalai	ANCESTRAL SPECIES	159						ENSGT00940000154611.ad.a	ENSGT00940000159228.a	ENSGT00940000159902	ENSGT01030000234614.B.b	ENSGT00390000005554	ENSGT00940000159228.b.a	ENSGT00940000155026	ENSGT00940000159943	ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01040000244250	ENSGT00940000159889.b.b	ENSGT00390000013003.e.b	ENSGT00900000141021.a	ENSGT00940000157639	ENSGT00390000013003.e.a	ENSGT00390000007310	ENSGT00940000157143	ENSGT00940000157967	ENSGT00940000159554	ENSGT01050000244887.A.a.b	ENSGT00390000010568	ENSGT00940000159571
Osteoglossiformes	ANCESTRAL SPECIES	2	ENSGT00390000007991	ENSGT00530000063749.c.a	ENSGT00940000159915	ENSGT01100000263497.E.a.b.m	ENSGT00950000182964.a.b.b.a.b.a	ENSGT00940000175916	ENSGT00390000018319.a.b.b.b	ENSGT00940000160221.c	ENSGT00940000159228.b.b	ENSGT00940000159902	ENSGT01030000234614.B.b	ENSGT00390000005554	ENSGT00940000159943	ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000159889.b.b	ENSGT00390000013003.e.b	ENSGT00900000141021.a	ENSGT00940000157639	ENSGT00390000013003.e.a	ENSGT00390000007310	ENSGT00940000157143.a	ENSGT00940000157967	ENSGT00940000159554.b	ENSGT01050000244887.A.a.b.g	ENSGT00390000010568	ENSGT00940000159571	ENSGT00940000156511.b
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	24	ENSSFOG00015018249	ENSSFOG00015026210	ENSSFOG00015024249	ENSSFOG00015024593	ENSSFOG00015029900	ENSSFOG00015030925	ENSSFOG00015029791	ENSSFOG00015018756	RABGAP1L (ENSSFOG00015018610)	GPR52 (ENSSFOG00015017728)	FAM163A (ENSSFOG00015032934)	ENSSFOG00015018451	nphs2 (ENSSFOG00015018378)	ENSSFOG00015024981	atpaf1 (ENSSFOG00015033150)	nfia (ENSSFOG00015018123) ##22	tm2d1 (ENSSFOG00015018060)	PATJ (ENSSFOG00015018014)	TAL1 (ENSSFOG00015025041)	ier5 (ENSSFOG00015017957)	stx6 (ENSSFOG00015017934)	ENSSFOG00015017918	stil (ENSSFOG00015017882)	RC3H1 (ENSSFOG00015017852)	serpinc1 (ENSSFOG00015017831)	s1pr1 (ENSSFOG00015017824)	dph5 (ENSSFOG00015017804)	slc30a7 (ENSSFOG00015017753)	vcam1b (ENSSFOG00015017729)	GPR88 (ENSSFOG00015017720)	cdc14ab (ENSSFOG00015017656)
Asian bonytongue	MODERN SPECIES	18	ENSSFOG00015031972	ENSSFOG00015017210	smg7 (ENSSFOG00015017252)	dhx9 (ENSSFOG00015017378)	mpv17l2 (ENSSFOG00015017475)	elavl1a (ENSSFOG00015017503)	ENSSFOG00015017531	thop1 (ENSSFOG00015017561)	zgc:101744 (ENSSFOG00015017605)	gng7 (ENSSFOG00015031675)	gadd45bb (ENSSFOG00015030803)	ENSSFOG00015017651	GPR52 (ENSSFOG00015031074)	FAM163A (ENSSFOG00015017745)	nrd1b (ENSSFOG00015017772)	nfia (ENSSFOG00015017821) ##22	tal1 (ENSSFOG00015024658)	ENSSFOG00015017873	ENSSFOG00015017883	RC3H1 (ENSSFOG00015017897)	zbtb37 (ENSSFOG00015032125)	S1PR1 (ENSSFOG00015017950)	zgc:110366 (ENSSFOG00015017961)	extl2 (ENSSFOG00015018004)	ENSSFOG00015033247	ENSSFOG00015032500	ENSSFOG00015018032	ENSSFOG00015027277	ENSSFOG00015018041	DBT (ENSSFOG00015018055)	mfsd14a1 (ENSSFOG00015018133)
P. kingsleyae	MODERN SPECIES	136	diras1b (ENSPKIG00000003444)	gng7 (ENSPKIG00000003433)	gadd45ba (ENSPKIG00000003412)	ENSPKIG00000003398	CARTPT (ENSPKIG00000003381)	MAP1S (ENSPKIG00000003342)	GPR52 (ENSPKIG00000003297)	ENSPKIG00000003250	FAM163A (ENSPKIG00000003216)	ENSPKIG00000003193	nphs2 (ENSPKIG00000003168)	axdnd1 (ENSPKIG00000003124)	ENSPKIG00000003091	atpaf1 (ENSPKIG00000003063)	frem1b (ENSPKIG00000002942)	nfia (ENSPKIG00000002775) ##22	tm2d1 (ENSPKIG00000002662)	PATJ (ENSPKIG00000002506)	tal1 (ENSPKIG00000002391)	ier5 (ENSPKIG00000002367)	stx6 (ENSPKIG00000002328)	ENSPKIG00000002291	stil (ENSPKIG00000002226)	RC3H1 (ENSPKIG00000002107)	serpinc1 (ENSPKIG00000002045)	zbtb37 (ENSPKIG00000002022)	s1pr1 (ENSPKIG00000002010)	dph5 (ENSPKIG00000001985)	slc30a7 (ENSPKIG00000001921)	ENSPKIG00000001873	GPR88 (ENSPKIG00000001846)
Clupeocephala	ANCESTRAL SPECIES	174					ENSGT00940000154611.ad.b	ENSGT00940000163422	ENSGT00940000154611.ad.a	ENSGT00940000159228.a	ENSGT00940000159902	ENSGT01030000234614.B.b	ENSGT00390000005554	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000159889.b.b	ENSGT00390000013003.e.b	ENSGT00940000157143.c.b	ENSGT00940000164809	ENSGT00940000158820	ENSGT00900000141021.a	ENSGT00940000157639	ENSGT00390000013003.e.a	ENSGT00390000007310	ENSGT00940000157143.c.a	ENSGT00940000157967	ENSGT00940000159554
Otomorpha	ANCESTRAL SPECIES	75	ENSGT00940000159915.b.i.b	ENSGT00950000182964.a.b.b.a.b.b	ENSGT00940000160221.d	ENSGT00940000163581.f.b	ENSGT00940000154611.ad.a	ENSGT00940000163422	ENSGT00940000159228.a	ENSGT00940000159228.b.a.b	ENSGT00940000159902	ENSGT01030000234614.B.b	ENSGT00390000005554	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000159889.b.b	ENSGT00900000141021.a	ENSGT00940000157639	ENSGT00390000013003.e.a	ENSGT00390000013003.e.b	ENSGT00940000157143.c.b	ENSGT00940000164809	ENSGT00940000158820	ENSGT00940000155899.e.b	ENSGT00940000164519.c.a	ENSGT00940000154842.a.b.f	ENSGT00510000046975.a
Clupeiformes	ANCESTRAL SPECIES	13	ENSGT00940000167241	ENSGT00390000016650.c.a	ENSGT00940000156539	ENSGT00950000182977.B.b.a.c.a	ENSGT00940000163581.f.b	ENSGT00940000154611.ad.a	ENSGT00940000163422	ENSGT00940000159228.b.b	ENSGT00940000159902	ENSGT01030000234614.B.b	ENSGT00390000005554	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000157030.c.a	ENSGT00940000159889.b.b	ENSGT00390000013003.e.b	ENSGT00940000157143.c.b	ENSGT00940000164809	ENSGT00940000158820	ENSGT00940000155899.e.b	ENSGT00940000164519.c.a	ENSGT00940000154842.a.b.f	ENSGT00510000046975.a	ENSGT00940000164081.a	ENSGT00940000165058.b
Denticle herring	MODERN SPECIES	4	tmem69 (ENSDCDG00000027488)	GPBP1L1 (ENSDCDG00000027482)	ENSDCDG00000027481	nasp (ENSDCDG00000027480)	akr1a1b (ENSDCDG00000027469)	si:ch211-264f5.2 (ENSDCDG00000027463)	GPR52 (ENSDCDG00000027460)	RABGAP1L (ENSDCDG00000026560)	FAM163A (ENSDCDG00000026509)	ENSDCDG00000026507	nphs2 (ENSDCDG00000026506)	nrd1b (ENSDCDG00000019301)	ENSDCDG00000019039	atpaf1 (ENSDCDG00000019007)	ENSDCDG00000018953	nfia (ENSDCDG00000018888) ##22	tm2d1 (ENSDCDG00000018877)	PATJ (ENSDCDG00000018847)	pdzk1ip1 (ENSDCDG00000018810) ##23	ENSDCDG00000018806	tal1 (ENSDCDG00000018802)	ier5 (ENSDCDG00000018799)	stx6 (ENSDCDG00000018795)	ENSDCDG00000035160	stil (ENSDCDG00000035156)	RC3H1 (ENSDCDG00000035153)	serpinc1 (ENSDCDG00000035131)	zbtb37 (ENSDCDG00000035121)	ENSDCDG00000035119	MAP1S (ENSDCDG00000035116)	ENSDCDG00000035113
Atlantic herring	MODERN SPECIES	1	tmem69 (ENSCHAG00000017802)	GPBP1L1 (ENSCHAG00000017735)	ENSCHAG00000017729	akr1a1b (ENSCHAG00000017463)	si:ch211-264f5.2 (ENSCHAG00000017439)	GPR52 (ENSCHAG00000017423)	RABGAP1L (ENSCHAG00000016305)	FAM163A (ENSCHAG00000016272)	ENSCHAG00000016216	nphs2 (ENSCHAG00000016200)	axdnd1 (ENSCHAG00000016051)	nrd1b (ENSCHAG00000011319)	ENSCHAG00000011164	atpaf1 (ENSCHAG00000011148)	frem1b (ENSCHAG00000010129)	nfia (ENSCHAG00000010009) ##22	ENSCHAG00000009983	tm2d1 (ENSCHAG00000009973)	PATJ (ENSCHAG00000009598)	ENSCHAG00000009538	ENSCHAG00000009534	ENSCHAG00000009517	stx6 (ENSCHAG00000009500)	stil (ENSCHAG00000009485)	serpinc1 (ENSCHAG00000009469)	ENSCHAG00000009454	ubxn6 (ENSCHAG00000009314)	chaf1a (ENSCHAG00000009206)	ENSCHAG00000009194	lhx4 (ENSCHAG00000009165)	ENSCHAG00000009145
Otophysi	ANCESTRAL SPECIES	3	ENSGT00950000182964.a.b.b.a.b.b	ENSGT00390000018319.a.b.b.b.a.b	ENSGT00940000160221.d	ENSGT00940000163581.f.b	ENSGT00940000154611.ad.a	ENSGT00940000163422	ENSGT00940000159228.a	ENSGT00940000159228.b.a.b	ENSGT00940000159902	ENSGT01030000234614.B.b	ENSGT00390000005554	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000159889.b.b	ENSGT00900000141021.a	ENSGT00940000157639	ENSGT00390000013003.e.a	ENSGT00390000013989.a	ENSGT00940000154973.a.b	ENSGT00940000153902.a	ENSGT00940000153321.b.a	ENSGT00940000155638.wb.b	ENSGT00950000182917.b.a.b	ENSGT00940000155295.y	ENSGT00390000003182
Characiphysae	ANCESTRAL SPECIES	28	ENSGT00940000163126.a.b	ENSGT00940000158995.a	ENSGT00940000154595	ENSGT00940000163581.f.a	ENSGT00940000163581.f.b	ENSGT00940000154611.ad.a	ENSGT00940000163422	ENSGT00940000159228.b.a.b	ENSGT00940000159902	ENSGT01030000234614.B.b	ENSGT00390000005554	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000154660.b ##23	ENSGT00940000159889.b.b	ENSGT00900000141021.a	ENSGT00940000157639	ENSGT00390000013003.e.a	ENSGT00390000013989.a	ENSGT00940000154973.a.b	ENSGT00940000153902.a	ENSGT00940000153321.b.a.h	ENSGT00940000155638.wb.b	ENSGT00950000182917.b.a.b	ENSGT00940000155295.y
Channel catfish	MODERN SPECIES	1	Pip5k1c (ENSIPUG00000025104)	rab11b (ENSIPUG00000025100)	march2 (ENSIPUG00000025099)	hnrnpm (ENSIPUG00000025097)	ifi44f5 (ENSIPUG00000025096)	GPR52 (ENSIPUG00000025095)	rabgap1l (ENSIPUG00000025092)	fam163a (ENSIPUG00000025089)	tdrd5 (ENSIPUG00000025087)	nphs2 (ENSIPUG00000025085)	axdnd1 (ENSIPUG00000025082)	nrd1b (ENSIPUG00000025078)	ENSIPUG00000025076	atpaf1 (ENSIPUG00000025073)	frem1b (ENSIPUG00000025069)	nfia (ENSIPUG00000025065) ##22	tm2d1 (ENSIPUG00000025063)	patj (ENSIPUG00000025049)	pdzk1ip1 (ENSIPUG00000025047)	tal1 (ENSIPUG00000025046)	Ier5 (ENSIPUG00000025045)	stx6 (ENSIPUG00000025042)	ENSIPUG00000025041	ENSIPUG00000025040	ENSIPUG00000025038	plekhb2 (ENSIPUG00000025035)	ENSIPUG00000025032	ankrd29 (ENSIPUG00000025031)	ENSIPUG00000025030	ENSIPUG00000025029	ttc39c (ENSIPUG00000025023)
Characiphysae_b	ANCESTRAL SPECIES	25	ENSGT00940000163126.a.b	ENSGT00940000158995.a	ENSGT00940000154595	ENSGT00940000163581.f.a	ENSGT00940000163581.f.b	ENSGT00940000154611.ad.a	ENSGT00940000163422	ENSGT00940000159228.b.a.b	ENSGT00940000159902	ENSGT01030000234614.B.b	ENSGT00390000005554	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000154660.b ##23	ENSGT00940000159889.b.b	ENSGT00900000141021.a	ENSGT00940000157639	ENSGT00390000013003.e.a	ENSGT00390000013989.a	ENSGT00940000154973.a.b	ENSGT00940000153902.a	ENSGT00940000153321.b.a.h	ENSGT00940000155638.wb.b	ENSGT00950000182917.b.a.b	ENSGT00940000155295.y
Electric eel	MODERN SPECIES	89	rpp21 (ENSEEEG00000016609)	PIP5K1C (ENSEEEG00000016611)	ENSEEEG00000016614	marchf2 (ENSEEEG00000016647)	hnrnpm (ENSEEEG00000016654)	ifi44f5 (ENSEEEG00000016708)	RABGAP1L (ENSEEEG00000016729)	FAM163A (ENSEEEG00000016965)	ENSEEEG00000016967	nphs2 (ENSEEEG00000016969)	axdnd1 (ENSEEEG00000016970)	nrd1b (ENSEEEG00000016978)	ENSEEEG00000017124	atpaf1 (ENSEEEG00000017125)	frem1b (ENSEEEG00000017127)	nfia (ENSEEEG00000017133) ##22	tm2d1 (ENSEEEG00000017176)	PATJ (ENSEEEG00000017177)	pdzk1ip1 (ENSEEEG00000017179) ##23	tal1 (ENSEEEG00000017181)	stx6 (ENSEEEG00000017182)	plekhb2 (ENSEEEG00000017185)	VPS4B (ENSEEEG00000017188)	ankrd29 (ENSEEEG00000017384)	ENSEEEG00000017389	ttc39c (ENSEEEG00000017392)
Characoidei	ANCESTRAL SPECIES	26	ENSGT00940000163126.a.b	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000154595	ENSGT00940000163581.f.b.e	ENSGT00940000154611.ad.a	ENSGT00940000163422	ENSGT00940000159228.b.a.b	ENSGT00940000159902	ENSGT01030000234614.B.b	ENSGT00390000005554	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000154660.b ##23	ENSGT00940000159889.b.b	ENSGT00900000141021.a	ENSGT00940000157639	ENSGT00390000013003.e.a	ENSGT00390000013989.a	ENSGT00940000154973.a.b	ENSGT00940000153902.a	ENSGT00940000153321.b.a.h	ENSGT00940000155638.wb.b	ENSGT00950000182917.b.a.b	ENSGT00940000155295.y
Mexicana tetra	MODERN SPECIES	20	ARHGAP45 (ENSAMXG00000015968)	gpx4a (ENSAMXG00000015995)	PIP5K1C (ENSAMXG00000016009)	ENSAMXG00000037623	marchf2 (ENSAMXG00000030875)	hnrnpm (ENSAMXG00000016073)	RABGAP1L (ENSAMXG00000016106)	FAM163A (ENSAMXG00000040583)	ENSAMXG00000017846	nphs2 (ENSAMXG00000017851)	axdnd1 (ENSAMXG00000017867)	nrd1b (ENSAMXG00000017875)	ENSAMXG00000042882	atpaf1 (ENSAMXG00000017879)	frem1b (ENSAMXG00000017882)	nfia (ENSAMXG00000017908) ##22	tm2d1 (ENSAMXG00000017918)	PATJ (ENSAMXG00000017920)	ENSAMXG00000039719	pdzk1ip1 (ENSAMXG00000030422) ##23	tal1 (ENSAMXG00000029567)	ier5 (ENSAMXG00000025066)	stx6 (ENSAMXG00000035000)	ENSAMXG00000040430	plekhb2 (ENSAMXG00000043456)	ENSAMXG00000017932	ENSAMXG00000017944	ENSAMXG00000017948	ttc39c (ENSAMXG00000017958)	ENSAMXG00000017959	OSBPL1A (ENSAMXG00000017960)
Red-bellied piranha	MODERN SPECIES	74	ENSPNAG00000020372	PIP5K1C (ENSPNAG00000020409)	rab11ba (ENSPNAG00000020475)	marchf2 (ENSPNAG00000020483)	hnrnpm (ENSPNAG00000020740)	GPR52 (ENSPNAG00000020780)	RABGAP1L (ENSPNAG00000020917)	FAM163A (ENSPNAG00000020952)	ENSPNAG00000020990	nphs2 (ENSPNAG00000021048)	axdnd1 (ENSPNAG00000021073)	nrd1b (ENSPNAG00000021103)	ENSPNAG00000021114	atpaf1 (ENSPNAG00000021133)	frem1b (ENSPNAG00000021300)	nfia (ENSPNAG00000021390) ##22	tm2d1 (ENSPNAG00000021422)	PATJ (ENSPNAG00000021485)	ENSPNAG00000021506	tal1 (ENSPNAG00000021512)	ier5 (ENSPNAG00000021525)	stx6 (ENSPNAG00000003688)	ENSPNAG00000021571	plekhb2 (ENSPNAG00000021605)	ENSPNAG00000021653	ankrd29 (ENSPNAG00000021664)	ENSPNAG00000021698	ENSPNAG00000021799	ttc39c (ENSPNAG00000006848)	OSBPL1A (ENSPNAG00000022096)	trmt13 (ENSPNAG00000022130)
Cyprinoidei	ANCESTRAL SPECIES	39	ENSGT00940000154595	ENSGT00940000158995.a	ENSGT00940000161659	ENSGT00940000163581.f.a.hb.b	ENSGT00940000163581.f.a.gb.b	ENSGT00940000154611.bd	ENSGT00940000163422	ENSGT00940000159228.a	ENSGT00940000159228.b.a.b	ENSGT01030000234614.B.b	ENSGT00390000005554	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000154660.b ##23	ENSGT00940000159889.b.b	ENSGT00900000141021.a	ENSGT00940000157639	ENSGT00390000013003.e.a	ENSGT00390000013989.a	ENSGT00940000154973.a.b	ENSGT00940000153902.a	ENSGT00940000153321.b.a	ENSGT00940000155638.wb.b	ENSGT00950000182917.b.a.b	ENSGT00940000155295.y
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	281																ENSGT00950000182916.a.b.a.a.a.a.c ##22	ENSGT00940000157668.m	ENSGT00940000155136.ib	ENSGT01030000234837	ENSGT00940000159889.b.b.e.b	ENSGT00900000141021.a.a	ENSGT00940000157639.p	ENSGT00390000013003.e.a.a.a	ENSGT00390000013989.a.a	ENSGT00940000154973.a.b.c	ENSGT00940000153902.a.d	ENSGT00940000153321.b.a.g	ENSGT00940000155638.wb.b	ENSGT00950000182917.b.a.b.g	ENSGT00940000155295.y.l.a	ENSGT00390000003182.a
Goldfish	MODERN SPECIES	14	ENSCARG00000010965	hnrnpm (ENSCARG00000011102)	marchf2 (ENSCARG00000011138)	ENSCARG00000011149	ENSCARG00000011257	ENSCARG00000011293	ENSCARG00000011340	RABGAP1L (ENSCARG00000011366)	GPR52 (ENSCARG00000011555)	tdrd5 (ENSCARG00000011563)	nphs2 (ENSCARG00000011573)	axdnd1 (ENSCARG00000011591)	nrd1b (ENSCARG00000011749)	ENSCARG00000015063	frem1b (ENSCARG00000015099)	nfia (ENSCARG00000003945) ##22	tm2d1 (ENSCARG00000004436)	PATJ (ENSCARG00000004482)	ENSCARG00000004603	tal1 (ENSCARG00000004607)	ier5 (ENSCARG00000004612)	stx6 (ENSCARG00000004618)	ENSCARG00000004636	plekhb2 (ENSCARG00000004648)	ENSCARG00000004663	ENSCARG00000004697	ENSCARG00000004721	ttc39c (ENSCARG00000004750)	OSBPL1A (ENSCARG00000004924)	dbt (ENSCARG00000005801)	rtca (ENSCARG00000005956)
Cyprininae_a	ANCESTRAL SPECIES	246																ENSGT00950000182916.a.b.a.a.a.a.c ##22	ENSGT00940000157668.m	ENSGT00940000155136.ib	ENSGT00940000154660.b ##23	ENSGT00940000159889.b.a	ENSGT01030000234837	ENSGT00940000159889.b.b.e.b	ENSGT00900000141021.a.a	ENSGT00940000157639.p	ENSGT00390000013003.e.a.a.a	ENSGT00390000013989.a.a	ENSGT00940000154973.a.b.c	ENSGT00940000153902.a.d	ENSGT00940000153321.b.a.g	ENSGT00940000155638.wb.b	ENSGT00950000182917.b.a.b.g
Common carp reference	MODERN SPECIES	5	ENSCCRG00000005187	ENSCCRG00000080900	ENSCCRG00000006777	ENSCCRG00000064952	ENSCCRG00000062100	ENSCCRG00000064638	FAM163A (ENSCCRG00000042112)	tdrd5 (ENSCCRG00000027290)	nphs2 (ENSCCRG00000008239)	axdnd1 (ENSCCRG00000008234)	nrd1b (ENSCCRG00000007124)	ENSCCRG00000007115	atpaf1 (ENSCCRG00000007113)	frem1b (ENSCCRG00000003389)	ENSCCRG00000069674	nfia (ENSCCRG00000077143) ##22	tm2d1 (ENSCCRG00000068740)	PATJ (ENSCCRG00000075387)	ENSCCRG00000012234	ENSCCRG00000076969	ENSCCRG00000054830	tal1 (ENSCCRG00000031038)	ier5 (ENSCCRG00000031035)	ENSCCRG00000056903	plekhb2 (ENSCCRG00000041900)	ENSCCRG00000060313	ankrd29 (ENSCCRG00000012167)	ENSCCRG00000010721	ENSCCRG00000074748	ttc39c (ENSCCRG00000012152)	OSBPL1A (ENSCCRG00000010216)
Golden-line barbel	MODERN SPECIES	156	PIP5K1C (ENSSGRG00000053251)	hnrnpm (ENSSGRG00000053445)	marchf2 (ENSSGRG00000053447)	ENSSGRG00000053448	ENSSGRG00000053468	ENSSGRG00000053469	ENSSGRG00000053471	ENSSGRG00000053473	ENSSGRG00000053477	RABGAP1L (ENSSGRG00000053485)	FAM163A (ENSSGRG00000053538)	tdrd5 (ENSSGRG00000053539)	nphs2 (ENSSGRG00000053542)	nrd1b (ENSSGRG00000053551)	ENSSGRG00000053611	nfia (ENSSGRG00000053621) ##22	RAB38 (ENSSGRG00000053708)	tm2d1 (ENSSGRG00000053709)	ENSSGRG00000053710	pdzk1ip1 (ENSSGRG00000053716) ##23	ENSSGRG00000053717	ier5 (ENSSGRG00000053719)	stx6 (ENSSGRG00000053720)	ENSSGRG00000053722	ENSSGRG00000000104	ENSSGRG00000000109	ankrd29 (ENSSGRG00000000118)	ENSSGRG00000000312	ttc39c (ENSSGRG00000000583)	OSBPL1A (ENSSGRG00000000624)	ENSSGRG00000000970
Cyprininae	ANCESTRAL SPECIES	11	ENSGT00940000159258.d.e	ENSGT00940000154595.fb	ENSGT00940000158995.a.d	ENSGT00940000163126.a.b.r	ENSGT00940000163581.f.a.hb.a	ENSGT00940000154611.ad.a.k.b	ENSGT00940000163422	ENSGT00940000159228.b.a.b.a	ENSGT00390000001360.r.a	ENSGT01030000234614.B.b.e	ENSGT00390000005554	ENSGT00940000155026.d	ENSGT00940000159943.e.b	ENSGT00390000012765.a	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.d ##22	ENSGT00940000157668.n	ENSGT00940000155136.hb	ENSGT00940000154660.b ##23	ENSGT00940000159889.b.b.e.a	ENSGT00900000141021.a.b	ENSGT00940000157639.o	ENSGT00390000013003.e.a.a.b	ENSGT00390000013989.a.b	ENSGT00940000154973.a.b.d	ENSGT00940000153902.a.c	ENSGT00940000153321.b.a.f	ENSGT00950000182917.b.a.b.h	ENSGT00940000155295.y.k	ENSGT00390000003182.b	ENSGT00940000158998
Goldfish	MODERN SPECIES	41	SBNO2 (ENSCARG00000042168)	tjp3 (ENSCARG00000041750)	ARHGAP45 (ENSCARG00000041408)	polr2eb (ENSCARG00000041231)	gpx4a (ENSCARG00000041135)	PIP5K1C (ENSCARG00000040940)	hnrnpm (ENSCARG00000040632)	marchf2 (ENSCARG00000040593)	ENSCARG00000040462	ENSCARG00000040375	RABGAP1L (ENSCARG00000039108)	FAM163A (ENSCARG00000039048)	nphs2 (ENSCARG00000039018)	ENSCARG00000038995	atpaf1 (ENSCARG00000038973)	nfia (ENSCARG00000038465) ##22	tm2d1 (ENSCARG00000038401)	PATJ (ENSCARG00000038233)	pdzk1ip1 (ENSCARG00000038202) ##23	tal1 (ENSCARG00000038192)	ier5 (ENSCARG00000038184)	stx6 (ENSCARG00000038137)	ENSCARG00000038127	plekhb2 (ENSCARG00000038119)	ENSCARG00000037173	ankrd29 (ENSCARG00000036917)	ttc39c (ENSCARG00000036841)	OSBPL1A (ENSCARG00000035273)	slc30a7 (ENSCARG00000035217)	dph5 (ENSCARG00000035198)	ENSCARG00000035188
Cyprininae_a	ANCESTRAL SPECIES	91	ENSGT00940000159258.d.f	ENSGT00940000154595.gb	ENSGT00940000158995.a.c	ENSGT00940000163126.a.b.q	ENSGT00940000163581.f.a.gb.b.a.b	ENSGT00940000163422.c	ENSGT00940000154611.ad.a.k.a	ENSGT00940000159228.b.a.b.b	ENSGT00390000001360.r.b	ENSGT01030000234614.B.b.f	ENSGT00390000005554	ENSGT00940000155026.d	ENSGT00940000159943.e.b	ENSGT00390000012765.a	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.d ##22	ENSGT00940000157668.n	ENSGT00940000155136.hb	ENSGT01040000244250	ENSGT00940000159889.b.b.e.a	ENSGT00900000141021.a.b	ENSGT00940000157639.o	ENSGT00390000013003.e.a.a.b	ENSGT00390000013989.a.b	ENSGT00940000154973.a.b.d	ENSGT00940000153902.a.c	ENSGT00940000153321.b.a.f	ENSGT00950000182917.b.a.b.h	ENSGT00940000155295.y.k	ENSGT00390000003182.b	ENSGT00940000158998
Common carp reference	MODERN SPECIES	43	tjp3 (ENSCCRG00000038766)	ENSCCRG00000062798	polr2eb (ENSCCRG00000040281)	ENSCCRG00000064766	ENSCCRG00000021333	hnrnpm (ENSCCRG00000075767)	marchf2 (ENSCCRG00000079083)	ENSCCRG00000007547	ENSCCRG00000007709	ENSCCRG00000015510	ENSCCRG00000015467	ENSCCRG00000021988	tdrd5 (ENSCCRG00000008348)	nphs2 (ENSCCRG00000027287)	atpaf1 (ENSCCRG00000056526)	nfia (ENSCCRG00000006812) ##22	tm2d1 (ENSCCRG00000069940)	PATJ (ENSCCRG00000006794)	tal1 (ENSCCRG00000038628)	stx6 (ENSCCRG00000068725)	ENSCCRG00000012223	plekhb2 (ENSCCRG00000012221)	ENSCCRG00000081158	ankrd29 (ENSCCRG00000066070)	ENSCCRG00000012160	ttc39c (ENSCCRG00000010716)	OSBPL1A (ENSCCRG00000011939)	trmt13 (ENSCCRG00000010354)	lrrc39 (ENSCCRG00000010353)	ENSCCRG00000010349	dbt (ENSCCRG00000010348)
Golden-line barbel	MODERN SPECIES	266	PIP5K1C (ENSSGRG00000029403)	hnrnpm (ENSSGRG00000029399)	marchf2 (ENSSGRG00000029395)	ENSSGRG00000029354	ENSSGRG00000029352	ENSSGRG00000029351	GPR52 (ENSSGRG00000029349)	RABGAP1L (ENSSGRG00000028885)	FAM163A (ENSSGRG00000028884)	tdrd5 (ENSSGRG00000028883)	nphs2 (ENSSGRG00000028882)	ENSSGRG00000028881	ENSSGRG00000028880	atpaf1 (ENSSGRG00000028878)	frem1b (ENSSGRG00000028877)	nfia (ENSSGRG00000028874) ##22
Zebrafish	MODERN SPECIES	14	ifi44f5 (ENSDARG00000094747)	ifi44f4 (ENSDARG00000071355)	ENSDARG00000094984	ENSDARG00000002293	ifi44f1 (ENSDARG00000071361)	GPR52 (ENSDARG00000093460)	ENSDARG00000061757	fam163ab (ENSDARG00000093021)	tdrd5 (ENSDARG00000071450)	nphs2 (ENSDARG00000042850)	axdnd1 (ENSDARG00000062355)	nrd1b (ENSDARG00000062372)	ENSDARG00000114797	atpaf1 (ENSDARG00000042799)	frem1b (ENSDARG00000062402)	nfia (ENSDARG00000062420) ##22	tm2d1 (ENSDARG00000057042)	ENSDARG00000093333	PATJ (ENSDARG00000024964)	pdzk1ip1 (ENSDARG00000017127) ##23	tal1 (ENSDARG00000019930)	ier5 (ENSDARG00000009881)	stx6 (ENSDARG00000042742)	ENSDARG00000071458	plekhb2 (ENSDARG00000013928)	ankrd29 (ENSDARG00000057159)	ENSDARG00000042753	ENSDARG00000071462	ttc39c (ENSDARG00000102308)	OSBPL1A (ENSDARG00000105147)	trmt13 (ENSDARG00000102846)
Euteleosteomorpha	ANCESTRAL SPECIES	163				ENSGT00940000154611.ad.b	ENSGT00940000163422	ENSGT00940000154611.bd	ENSGT00940000159228.a.a	ENSGT00940000159902	ENSGT01030000234614.B.b	ENSGT00390000005554	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000159889.b.b	ENSGT00390000013003.e.b	ENSGT00940000157143.c.b	ENSGT00940000164809	ENSGT00940000158820	ENSGT00390000013063.v	ENSGT00940000155929.a.b.b	ENSGT00940000161675	ENSGT00940000153991.a.b.a	ENSGT00890000139453.b.e.a	ENSGT00390000009776.p	ENSGT00940000155807.b
Acanthomorphata	ANCESTRAL SPECIES	160											ENSGT00390000012765	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00390000013003.f	ENSGT00940000157639	ENSGT00940000155528.t.d.a	ENSGT01050000244924.a.a.b.a.a	ENSGT00530000064649	ENSGT00940000160006	ENSGT00980000203233	ENSGT00390000007310	ENSGT00940000157967	ENSGT00940000159554	ENSGT01050000244887.A.a.b	ENSGT00390000010568
Euacanthomorphacea	ANCESTRAL SPECIES	154											ENSGT00390000012765	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837
Pinecone sodierfish	MODERN SPECIES	18	C19orf25 (ENSMMDG00005007776)	ENSMMDG00005007772	DIRAS1 (ENSMMDG00005007769)	ENSMMDG00005007767	ENSMMDG00005007765	ENSMMDG00005007763	gadd45ba (ENSMMDG00005007761)	ENSMMDG00005007758	CARTPT (ENSMMDG00005007755)	ENSMMDG00005007752	atpaf1 (ENSMMDG00005007748)	ENSMMDG00005007747	nrd1b (ENSMMDG00005007746)	ENSMMDG00005007745	frem1b (ENSMMDG00005007738)	nfia (ENSMMDG00005007736) ##22	tm2d1 (ENSMMDG00005007733)	PATJ (ENSMMDG00005007731)	ENSMMDG00005007729	ENSMMDG00005007727	ENSMMDG00005007724	gjc4b (ENSMMDG00005007723)	ENSMMDG00005007720	ENSMMDG00005007717	ENSMMDG00005007712	ENSMMDG00005007706	ENSMMDG00005007702	dsc2l (ENSMMDG00005007697)	ENSMMDG00005007694	ENSMMDG00005007692	cdh2 (ENSMMDG00005003329)
Percomorphaceae	ANCESTRAL SPECIES	62												ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00530000063749.c.a	ENSGT00940000159915.a	ENSGT00950000182964.a.b.b.a.a
Tiger tail seahorse	MODERN SPECIES	473	PODN (ENSHCOG00000003648)	slc1a7b (ENSHCOG00000003634)	akr1a1b (ENSHCOG00000003614)	ENSHCOG00000003598	slc5a9 (ENSHCOG00000003593)	ENSHCOG00000003573	ENSHCOG00000003563	ndufa11 (ENSHCOG00000003540)	zgc:171480 (ENSHCOG00000003526)	ctns (ENSHCOG00000003511)	ENSHCOG00000003501	ENSHCOG00000003486	nrd1b (ENSHCOG00000003475)	SAMD9L (ENSHCOG00000003432)	frem1b (ENSHCOG00000003404)	nfia (ENSHCOG00000003301) ##22	tm2d1 (ENSHCOG00000003285)	ENSHCOG00000003266	ENSHCOG00000021043	thop1 (ENSHCOG00000021001)	reep6 (ENSHCOG00000020988)	ENSHCOG00000020962	ENSHCOG00000020925	sgta (ENSHCOG00000020910)	C19orf25 (ENSHCOG00000020861)	ENSHCOG00000020853	ENSHCOG00000020835	camk4 (ENSHCOG00000020826)	ENSHCOG00000020812	ENSHCOG00000020802	serpinc1 (ENSHCOG00000020787)
Percomorphaceae_B	DUPLICATION
Percomorphaceae_B	DUPLICATION
Percomorphaceae_B	ANCESTRAL SPECIES	29											ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT01030000237075	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00530000063749.c.a	ENSGT00940000162978.b
Ovalentaria	ANCESTRAL SPECIES	26											ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000177981	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT01030000237075	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00530000063749.c.a	ENSGT00940000162978.b
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22
Oryzias	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22
Chinese medaka	MODERN SPECIES	912																ENSOSIG00000010005 ##22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22
Turquoise killifish	MODERN SPECIES	1614	STARD3 (ENSNFUG00015000123)	zgc:91968 (ENSNFUG00015003851)	TCAP (ENSNFUG00015003847)	rprml (ENSNFUG00015003844)	itgb3a (ENSNFUG00015003702)	METTL2A (ENSNFUG00015003640)	TLK2 (ENSNFUG00015003526)	MRC2 (ENSNFUG00015003192)	RND2 (ENSNFUG00015003079)	VAT1 (ENSNFUG00015003072)	PHB (ENSNFUG00015003064)	ENSNFUG00015003059	ZNF652 (ENSNFUG00015003049)	phospho1 (ENSNFUG00015003037)	eftud2 (ENSNFUG00015003027)	nfia (ENSNFUG00015003015) ##22	OLA.18946 (ENSNFUG00015003010)	RPL19 (ENSNFUG00015003000)	cacnb1 (ENSNFUG00015002964)	arl5c (ENSNFUG00015002926)	PLXDC1 (ENSNFUG00015002910)	LASP1 (ENSNFUG00015002895)	ENSNFUG00015002849	hexim1 (ENSNFUG00015002823)	plcd3a (ENSNFUG00015002535)	NMT1A (ENSNFUG00015002438)	RETSAT (ENSNFUG00015002429)	ENSNFUG00015002421	ENSNFUG00015002419	ENSNFUG00015002410	TMEM98 (ENSNFUG00015002405)
Ovalentaria_B	ANCESTRAL SPECIES	51											ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00530000063749.c.a	ENSGT00940000162978.b	ENSGT00940000159915.a
Cichlidae	ANCESTRAL SPECIES	67									ENSGT00910000144271.A.c.b.a.a.f.a.a	ENSGT00940000177352	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000165420	ENSGT00940000158722	ENSGT00940000158262	ENSGT00940000153460.c.a	ENSGT00940000162231	ENSGT00940000155962	ENSGT00940000156750	ENSGT00940000158998	ENSGT00390000003182
Midas cichlid	MODERN SPECIES	366												ENSACIG00000005139	ENSACIG00000005153	ENSACIG00000005162	frem1b (ENSACIG00000005179)	nfia (ENSACIG00000005257) ##22	tm2d1 (ENSACIG00000005280)	ENSACIG00000005303	ENSACIG00000005343	ENSACIG00000005362	ENSACIG00000005369	thop1 (ENSACIG00000005404)	ENSACIG00000005430	jade3 (ENSACIG00000005465)	rp2 (ENSACIG00000005625)	slc9a7 (ENSACIG00000005638)	CHST7 (ENSACIG00000005682)	tubgcp5 (ENSACIG00000005691)	dbt (ENSACIG00000005741)	trmt13 (ENSACIG00000005804)	lrrc39 (ENSACIG00000005877)
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000159170.c	ENSGT00940000164939.a.a	ENSGT00940000154737.c.h	ENSGT00940000160191	ENSGT00940000164412.b	ENSGT00910000144271.A.c.b.a.a.f.b.a.a.b	ENSGT00910000144271.A.c.b.a.a.f.a.a.a	ENSGT00940000177352	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT01030000234551.i.e.b.f	ENSGT01030000234551.i.e.a.a.d.a.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000165420	ENSGT00940000158722	ENSGT00940000158262	ENSGT00940000153460.c.a	ENSGT00940000162231	ENSGT00940000155962	ENSGT00940000156750	ENSGT00940000158998	ENSGT00390000003182
Nile tilapia	MODERN SPECIES	14	mpnd (ENSONIG00000004672)	ENSONIG00000004671	ENSONIG00000028477	ENSONIG00000034900	ENSONIG00000037283	ENSONIG00000004654	ENSONIG00000004650	ENSONIG00000004646	nrd1b (ENSONIG00000004642)	ENSONIG00000042091	ENSONIG00000004640	ENSONIG00000004637	ENSONIG00000002437	frem1b (ENSONIG00000004629)	ENSONIG00000039573	nfia (ENSONIG00000004623) ##22	tm2d1 (ENSONIG00000039426)	PATJ (ENSONIG00000004614)	ENSONIG00000037384	ENSONIG00000036652	thop1 (ENSONIG00000004608)	ENSONIG00000034614	ENSONIG00000042741	ENSONIG00000004606	jade3 (ENSONIG00000004604)	rp2 (ENSONIG00000004599)	slc9a7 (ENSONIG00000004589)	CHST7 (ENSONIG00000021356)	tubgcp5 (ENSONIG00000004583)	dbt (ENSONIG00000004579)	lrrc39 (ENSONIG00000004577)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00940000164939.a.a	ENSGT00940000154737.c.h	ENSGT00940000160191	ENSGT00940000164412.b	ENSGT00910000144271.A.c.b.a.a.f.b.a.a.b	ENSGT00910000144271.A.c.b.a.a.f.a.a.a	ENSGT00940000177352	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT01030000234551.i.e.b.f	ENSGT01030000234551.i.e.a.a.d.a.b	ENSGT00940000165098	ENSGT00940000178995	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000165420	ENSGT00940000158722	ENSGT00940000158262	ENSGT00940000153460.c.a	ENSGT00940000162231	ENSGT00940000155962	ENSGT00940000156750	ENSGT00940000158998	ENSGT00390000003182	ENSGT00940000160221.c
Lyretail cichlid	MODERN SPECIES	307	rorca (ENSNBRG00000009592)	sh3gl1b (ENSNBRG00000009556)	mpnd (ENSNBRG00000009515)	ENSNBRG00000009430	ENSNBRG00000009386	ENSNBRG00000009296	ENSNBRG00000009255	ENSNBRG00000009233	nrd1b (ENSNBRG00000008520)	ENSNBRG00000008300	ENSNBRG00000008288	ENSNBRG00000008269	ENSNBRG00000008228	frem1b (ENSNBRG00000008129)	ENSNBRG00000008104	nfia (ENSNBRG00000008030) ##22	tm2d1 (ENSNBRG00000008011)	ENSNBRG00000007942	ENSNBRG00000007856	ENSNBRG00000007830	ENSNBRG00000007813	ENSNBRG00000007754	thop1 (ENSNBRG00000007678)	ENSNBRG00000007627	jade3 (ENSNBRG00000007591)	rp2 (ENSNBRG00000007558)	slc9a7 (ENSNBRG00000007087)	CHST7 (ENSNBRG00000007000)	tubgcp5 (ENSNBRG00000006941)	dbt (ENSNBRG00000006874)	lrrc39 (ENSNBRG00000006856)
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00940000159170.c	ENSGT00940000164939.a.a	ENSGT00940000154737.c.h	ENSGT00940000160191	ENSGT00940000164412.b	ENSGT00910000144271.A.c.b.a.a.f.b.a.a.b	ENSGT00910000144271.A.c.b.a.a.f.a.a.a	ENSGT00910000144271.A.c.b.a.a.f.b.a.a.a.b	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b.i	ENSGT01030000234551.i.e.b.f	ENSGT01030000234551.i.e.a.a.d.a.b	ENSGT00940000165098	ENSGT00940000178995	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000165420	ENSGT00940000158722	ENSGT00940000158262	ENSGT00940000153460.c.a	ENSGT00940000162231	ENSGT00940000155962	ENSGT00940000156750	ENSGT00940000158998	ENSGT00390000003182	ENSGT00940000160221.c
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00940000164939.a.a	ENSGT00940000154737.c.h	ENSGT00940000160191	ENSGT00940000164412.b	ENSGT00910000144271.A.c.b.a.a.f.b.a.a.b	ENSGT00910000144271.A.c.b.a.a.f.a.a.a	ENSGT00910000144271.A.c.b.a.a.f.b.a.a.a.a.a.b.a	ENSGT00910000144271.A.c.b.a.a.f.b.a.a.a.b	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b.i	ENSGT01030000234551.i.e.b.f	ENSGT01030000234551.i.e.a.a.d.a.b	ENSGT00940000165098	ENSGT00940000178995	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000165420	ENSGT00940000158722	ENSGT00940000158262	ENSGT00940000153460.c.a	ENSGT00940000162231	ENSGT00940000155962	ENSGT00940000156750	ENSGT00940000158998	ENSGT00390000003182	ENSGT00940000160221.c
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00940000164412.b	ENSGT00910000144271.A.c.b.a.a.f.b.a.a.a.a.b	ENSGT00910000144271.A.c.b.a.a.f.b.a.a.a.a.a.a	ENSGT00910000144271.A.c.b.a.a.f.b.a.a.b	ENSGT00940000163484.t.b.b.a.a.b.a	ENSGT00910000144271.A.c.b.a.a.f.a.a.a	ENSGT00910000144271.A.c.b.a.a.f.b.a.a.a.a.a.b.a	ENSGT00910000144271.A.c.b.a.a.f.b.a.a.a.b	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b.i	ENSGT01030000234551.i.e.b.f	ENSGT01030000234551.i.e.a.a.d.a.b	ENSGT00940000165098.c	ENSGT00940000178995	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000165420	ENSGT00940000158722	ENSGT00940000158262	ENSGT00940000153460.c.a	ENSGT00940000162231	ENSGT00940000155962	ENSGT00940000156750	ENSGT00940000158998	ENSGT00390000003182	ENSGT00940000160221.c
Eastern happy	MODERN SPECIES	14	ENSACLG00000021408	nrd1b (ENSACLG00000021281)	ENSACLG00000021263	ENSACLG00000021202	ENSACLG00000021125	ENSACLG00000021075	ENSACLG00000021018	ENSACLG00000020904	ENSACLG00000020830	ENSACLG00000020760	auh (ENSACLG00000020747)	ENSACLG00000020733	ENSACLG00000020725	frem1b (ENSACLG00000020649)	ENSACLG00000020595	nfia (ENSACLG00000020571) ##22	tm2d1 (ENSACLG00000020555)	ENSACLG00000020514	ENSACLG00000020498	ENSACLG00000020485	ENSACLG00000020452	thop1 (ENSACLG00000020407)	ENSACLG00000020379	jade3 (ENSACLG00000020316)	rp2 (ENSACLG00000020290)	slc9a7 (ENSACLG00000020243)	CHST7 (ENSACLG00000020234)	tubgcp5 (ENSACLG00000020132)	dbt (ENSACLG00000020103)	lrrc39 (ENSACLG00000020043)	trmt13 (ENSACLG00000020018)
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005005717	ENSMZEG00005005674	ENSMZEG00005005668	ENSMZEG00005005656	ENSMZEG00005005644	ENSMZEG00005005623	ENSMZEG00005005316	ENSMZEG00005005274	ENSMZEG00005005202	ENSMZEG00005005110	ENSMZEG00005005072	nrd1b (ENSMZEG00005005038)	ENSMZEG00005005031	ENSMZEG00005004979	ENSMZEG00005004951	nfia (ENSMZEG00005004938) ##22	tm2d1 (ENSMZEG00005004900)	PATJ (ENSMZEG00005004841)	ENSMZEG00005004783	ENSMZEG00005004764	ENSMZEG00005004691	thop1 (ENSMZEG00005004643)	ENSMZEG00005004616	jade3 (ENSMZEG00005004555)	rp2 (ENSMZEG00005004528)	slc9a7 (ENSMZEG00005003195)	CHST7 (ENSMZEG00005020990)	tubgcp5 (ENSMZEG00005020978)	dbt (ENSMZEG00005020969)	lrrc39 (ENSMZEG00005020964)	trmt13 (ENSMZEG00005020959)
P. nyererei	MODERN SPECIES	341														frem1b (ENSPNYG00000014113)	ENSPNYG00000014085	nfia (ENSPNYG00000014068) ##22	tm2d1 (ENSPNYG00000014055)	ENSPNYG00000014024	ENSPNYG00000014000	ENSPNYG00000013990	ENSPNYG00000013962	thop1 (ENSPNYG00000013922)	ENSPNYG00000013904	jade3 (ENSPNYG00000013892)	rp2 (ENSPNYG00000013870)	slc9a7 (ENSPNYG00000013836)	CHST7 (ENSPNYG00000013824)	tubgcp5 (ENSPNYG00000013770)	dbt (ENSPNYG00000013742)	lrrc39 (ENSPNYG00000013730)	trmt13 (ENSPNYG00000013690)
Burton s mouthbrooder	MODERN SPECIES	322										ENSHBUG00000008868	ENSHBUG00000008714	NRDC (ENSHBUG00000008693)	ENSHBUG00000008631	ENSHBUG00000008623	frem1b (ENSHBUG00000008553)	nfia (ENSHBUG00000008518) ##22	ENSHBUG00000008491	ENSHBUG00000008476	ENSHBUG00000008442	ENSHBUG00000008403	ENSHBUG00000008385	ENSHBUG00000008376	thop1 (ENSHBUG00000008317)	ENSHBUG00000008279	jade3 (ENSHBUG00000008255)	rp2 (ENSHBUG00000008217)	slc9a7 (ENSHBUG00000008174)	CHST7 (ENSHBUG00000007956)	tubgcp5 (ENSHBUG00000007944)	dbt (ENSHBUG00000007822)	lrrc39 (ENSHBUG00000007805)
Pomacentridae	ANCESTRAL SPECIES	148	ENSGT00940000160221.c	ENSGT00940000160580.a	ENSGT00940000167285	ENSGT00390000003821	ENSGT00940000160280.c	ENSGT00390000013329	ENSGT00940000177694	ENSGT00940000177712	ENSGT00940000155528.t.d.a	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000177981	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668
Bicolor damselfish	MODERN SPECIES	2244																ENSSPAG00000020620 ##22
Pomacentridae_A	ANCESTRAL SPECIES	156	ENSGT00940000160221.c	ENSGT00940000154067.c	ENSGT00940000160580.a	ENSGT00940000167285	ENSGT00390000003821	ENSGT00940000160280.c	ENSGT00390000013329	ENSGT00940000177694	ENSGT00940000177712	ENSGT00940000155528.t.d.a	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000177981	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668
Spiny chromis	MODERN SPECIES	1681																ENSAPOG00000005803 ##22	tm2d1 (ENSAPOG00000005815)
Amphiprion	ANCESTRAL SPECIES	102	ENSGT00940000160221.c	ENSGT00940000154067.c	ENSGT00940000160580.a	ENSGT00940000167285	ENSGT00390000003821	ENSGT00940000160280.c	ENSGT00390000013329	ENSGT00940000177694	ENSGT00940000177712	ENSGT00940000155528.t.d.a	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000177981	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000156442	ENSGT01030000234960	ENSGT00940000161593	ENSGT01090000260768	ENSGT00940000158154	ENSGT00730000110872.b.cb	ENSGT00950000182928.B.d.b	ENSGT00390000000312	ENSGT01030000234559.b ##31	ENSGT00730000111078
Clown anemonefish	MODERN SPECIES	3000																nfia (ENSAOCG00000022493) ##22
Orange clownfish	MODERN SPECIES	11	trmt13 (ENSAPEG00000004025)	MAP1S (ENSAPEG00000003964)	zgc:153738 (ENSAPEG00000003917)	palm1a (ENSAPEG00000003894)	ENSAPEG00000003883	med16 (ENSAPEG00000003863)	ENSAPEG00000003833	PLPPR3 (ENSAPEG00000003818)	TMEM259 (ENSAPEG00000003748)	ENSAPEG00000003724	ENSAPEG00000003694	ENSAPEG00000003670	nrd1b (ENSAPEG00000003637)	ENSAPEG00000003606	frem1b (ENSAPEG00000003534)	nfia (ENSAPEG00000003472) ##22	tm2d1 (ENSAPEG00000003430)	PATJ (ENSAPEG00000003337)	lsg1 (ENSAPEG00000003252)	fam43a (ENSAPEG00000003222)	ENSAPEG00000003194	XXYLT1 (ENSAPEG00000003165)	srsf11 (ENSAPEG00000003142)	ankrd13c (ENSAPEG00000003124)	cthl (ENSAPEG00000003061)	PTGER3 (ENSAPEG00000003025) ##31	zranb2 (ENSAPEG00000002999)	ENSAPEG00000002919	negr1 (ENSAPEG00000002850)	ENSAPEG00000002825	calr (ENSAPEG00000002787)
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT01100000263594.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT01030000237075	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00940000162978.b	ENSGT00530000063749.c.a
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00950000183190.a.a.a.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT01030000237075	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00940000162978.b	ENSGT00530000063749.c.a
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00950000183190.a.a.a.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT01030000237075	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00940000162978.b	ENSGT00530000063749.c.a
Ballan wrasse	MODERN SPECIES	1154																nfia (ENSLBEG00000027038) ##22	tm2d1 (ENSLBEG00000027022)
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00950000183190.a.a.a.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000177981	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT01030000237075	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00940000162978.b	ENSGT00530000063749.c.a
Perciformes	ANCESTRAL SPECIES	8	ENSGT00950000183190.a.a.a.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT01030000237075	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00940000162978.b	ENSGT00530000063749.c.a
Perciformes_a	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22
Pike perch	MODERN SPECIES	574																nfia (ENSSLUG00000013477) ##22
Cottioidei	ANCESTRAL SPECIES	56														ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT01030000237075	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00940000162978.b	ENSGT00530000063749.c.a	ENSGT00940000159915.a
Lumpfish	MODERN SPECIES	19									calr3a (ENSCLMG00005000559)	rad23ab (ENSCLMG00005000587)	EPS15L1 (ENSCLMG00005000604)	klf2a (ENSCLMG00005001121)	ENSCLMG00005001122	ENSCLMG00005001126	frem1b (ENSCLMG00005001128)	nfia (ENSCLMG00005001133) ##22	tm2d1 (ENSCLMG00005001190)	ENSCLMG00005001192	ENSCLMG00005001193	ENSCLMG00005001194	thop1 (ENSCLMG00005001221)	sgta (ENSCLMG00005006134)	SLC39A3 (ENSCLMG00005006137)	ENSCLMG00005006138	zgc:113223 (ENSCLMG00005006141)	reep6 (ENSCLMG00005006153)	C19orf25 (ENSCLMG00005006220)	APC2 (ENSCLMG00005006223)	ENSCLMG00005006279	DIRAS1 (ENSCLMG00005006282)	tprg1 (ENSCLMG00005006285)
Stickleback	MODERN SPECIES	8	SZT2 (ENSGACG00000002952)	hyi (ENSGACG00000002976)	ptprfa (ENSGACG00000002994)	ENSGACG00000003008	ENSGACG00000003018	klf2a (ENSGACG00000003021)	EPS15L1 (ENSGACG00000003029)	rad23ab (ENSGACG00000003046)	ENSGACG00000003052	ARHGAP39 (ENSGACG00000003082)	ST3GAL3 (ENSGACG00000003093)	rad54l (ENSGACG00000003111)	ENSGACG00000003125	ENSGACG00000003132	frem1b (ENSGACG00000003138)	nfia (ENSGACG00000003153) ##22	tm2d1 (ENSGACG00000003158)	ENSGACG00000003170	ENSGACG00000003176	ENSGACG00000003180	ENSGACG00000003181	ENSGACG00000003187	ENSGACG00000003193	thop1 (ENSGACG00000003196)	sgta (ENSGACG00000003263)	SLC39A3 (ENSGACG00000003277)	DIRAS1 (ENSGACG00000003289)	APC2 (ENSGACG00000003307)	ENSGACG00000003315	ENSGACG00000003316	C19orf25 (ENSGACG00000003317)
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00950000183190.a.a.a.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000154660.b ##23	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00940000162978.b	ENSGT00530000063749.c.a	ENSGT00940000159915.a
Gilthead seabream	MODERN SPECIES	83																ENSSAUG00010020075 ##22	ENSSAUG00010020078
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00950000183190.a.a.b.c.b	ENSGT00950000183190.a.a.a.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00940000162978.b	ENSGT00530000063749.c.a	ENSGT00940000159915.a	ENSGT00950000182964.a.b.b.a.a.b
European seabass	MODERN SPECIES	17	fbxo7 (ENSDLAG00005005176)	ENSDLAG00005028562	xpot (ENSDLAG00005005223)	ENSDLAG00005003646	ENSDLAG00005029905	ENSDLAG00005021089	ENSDLAG00005016746	ENSDLAG00005021085	ENSDLAG00005018850	ENSDLAG00005005532	ENSDLAG00005030500	ENSDLAG00005030510	ENSDLAG00005029073	ENSDLAG00005005285	frem1b (ENSDLAG00005018791)	nfia (ENSDLAG00005028036) ##22	tm2d1 (ENSDLAG00005029577)	PATJ (ENSDLAG00005008031)	ENSDLAG00005033156	SGTA (ENSDLAG00005005731)	THOP1 (ENSDLAG00005005845)	ENSDLAG00005013881	ENSDLAG00005013883	zgc:113223 (ENSDLAG00005013899)	reep6 (ENSDLAG00005013909)	ENSDLAG00005027548	ENSDLAG00005029458	ENSDLAG00005013936	ENSDLAG00005035068	ENSDLAG00005030582	ENSDLAG00005030075
Large yellow croaker	MODERN SPECIES	489	prrx1b (ENSLCRG00005006097)	gorab (ENSLCRG00005006096)	ntmt2 (ENSLCRG00005006095)	kifap3a (ENSLCRG00005005844)	niban1a (ENSLCRG00005005824)	TRMT1L (ENSLCRG00005005814)	ENSLCRG00005005813	ENSLCRG00005005811	prpf38a (ENSLCRG00005005809)	ENSLCRG00005005808	orc1 (ENSLCRG00005005729)	ENSLCRG00005005722	nrd1b (ENSLCRG00005001392)	ENSLCRG00005001356	frem1b (ENSLCRG00005000876)	nfia (ENSLCRG00005011783) ##22	tm2d1 (ENSLCRG00005011776)	PATJ (ENSLCRG00005011765)	ENSLCRG00005011753	ENSLCRG00005011751	thop1 (ENSLCRG00005007621)	sgta (ENSLCRG00005007560)	SLC39A3 (ENSLCRG00005007558)	ENSLCRG00005007555	zgc:113223 (ENSLCRG00005007554)	reep6 (ENSLCRG00005007552)	ENSLCRG00005007551	ENSLCRG00005007550	APC2 (ENSLCRG00005007547)	DIRAS1 (ENSLCRG00005007546)	gadd45ba (ENSLCRG00005007542)
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT01100000263594.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000177981	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00940000162978.b	ENSGT00530000063749.c.a	ENSGT00940000159915.a	ENSGT00950000182964.a.b.b.a.a.b
Carangaria	ANCESTRAL SPECIES	7	ENSGT00950000183190.a.a.b.c.b	ENSGT01100000263594.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00940000162978.b	ENSGT01030000235617	ENSGT00530000063749.c.a	ENSGT00940000159915.a
Carangaria_A	ANCESTRAL SPECIES	73	ENSGT00950000183190.a.a.b.c.b	ENSGT00950000183190.a.a.a.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136.mc	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00940000162978.b	ENSGT01030000235617	ENSGT00530000063749.c.a	ENSGT00940000159915.a	ENSGT00950000182964.a.b.b.a.a.b
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	1738																nfia (ENSLCAG00010013130) ##22
Barramundi perch	MODERN SPECIES	12	TRMT1L (ENSLCAG00010009200)	ENSLCAG00010009197	prpf38a (ENSLCAG00010009186)	ENSLCAG00010009176	ENSLCAG00010009173	ENSLCAG00010009169	ENSLCAG00010009157	ENSLCAG00010009145	nrd1b (ENSLCAG00010008718)	ENSLCAG00010008609	ENSLCAG00010008606	orc1 (ENSLCAG00010008509)	ENSLCAG00010008482	ENSLCAG00010008469	frem1b (ENSLCAG00010008458)	nfia (ENSLCAG00010008354) ##22	tm2d1 (ENSLCAG00010008311)	PATJ (ENSLCAG00010008297)
Seriola	ANCESTRAL SPECIES		ENSGT00940000156211.a.a	ENSGT00940000155705.b	ENSGT00940000156259.a.a	ENSGT00940000158851	ENSGT00530000063632.A	ENSGT00950000182946.lb.b.h	ENSGT00730000114327	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT01090000260361	ENSGT00940000155136.mc	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.b.a.b.a.c.a.a.b.a	ENSGT00980000198678.m	ENSGT01070000253760.b.a.a.a.b.d.i.a.a.a.b	ENSGT01030000234837	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991
Greater amberjack	MODERN SPECIES	108																nfia (ENSSDUG00000021262) ##22	tm2d1 (ENSSDUG00000021238)	ENSSDUG00000021225	PATJ (ENSSDUG00000021176)	ENSSDUG00000021161	ENSSDUG00000021153	ENSSDUG00000021148	ENSSDUG00000021139	ENSSDUG00000021134	ENSSDUG00000021128	ENSSDUG00000021078	thop1 (ENSSDUG00000021044)	sgta (ENSSDUG00000021023)	SLC39A3 (ENSSDUG00000021015)	ENSSDUG00000020988	zgc:113223 (ENSSDUG00000020974)
Yellowtail amberjack	MODERN SPECIES	3176	ENSSLDG00000014960	TSPAN1 (ENSSLDG00000014946)	pomgnt1 (ENSSLDG00000014878)	ENSSLDG00000014850	ENSSLDG00000014837	ENSSLDG00000014831	ENSSLDG00000014823	ENSSLDG00000014815	prpf38a (ENSSLDG00000014803)	orc1 (ENSSLDG00000014721)	ENSSLDG00000014680	nrd1b (ENSSLDG00000014639)	ENSSLDG00000014621	frem1b (ENSSLDG00000014552)	ENSSLDG00000014524	nfia (ENSSLDG00000014496) ##22	tm2d1 (ENSSLDG00000014446)	ENSSLDG00000014416	ENSSLDG00000014358	ENSSLDG00000014339	ENSSLDG00000014295	ENSSLDG00000014271	ENSSLDG00000014255	ENSSLDG00000014243	ENSSLDG00000014233	ENSSLDG00000014201	pdzk1ip1 (ENSSLDG00000014184) ##23	ENSSLDG00000014152	thop1 (ENSSLDG00000014117)	sgta (ENSSLDG00000014086)	SLC39A3 (ENSSLDG00000014074)
Pleuronectoidei	ANCESTRAL SPECIES	20	ENSGT00950000183190.a.a.b.c.b	ENSGT01100000263594.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000161493	ENSGT00940000165051	ENSGT00940000166036	ENSGT00940000160231	ENSGT00940000159037	ENSGT00390000007991	ENSGT00530000063749.c.a	ENSGT00940000159915.a	ENSGT00950000182964.a.b.b.a.a.b	ENSGT00390000018319.a.b.b.b.a.a
Turbot	MODERN SPECIES	3															ENSSMAG00000030455	nfia (ENSSMAG00000026972) ##22	tm2d1 (ENSSMAG00000024466)	PATJ (ENSSMAG00000023621)	ENSSMAG00000033377	ENSSMAG00000016873	ENSSMAG00000016876	ENSSMAG00000022720	ENSSMAG00000016925	ENSSMAG00000016954	ENSSMAG00000029729	ENSSMAG00000016987	ENSSMAG00000016996	ENSSMAG00000017020	ENSSMAG00000017047	ENSSMAG00000017063	ENSSMAG00000025028
Tongue sole	MODERN SPECIES	11	gorab (ENSCSEG00000001201)	ntmt2 (ENSCSEG00000001207)	kifap3a (ENSCSEG00000001211)	niban1a (ENSCSEG00000001233)	TRMT1L (ENSCSEG00000001248)	ENSCSEG00000001267	prpf38a (ENSCSEG00000001269)	orc1 (ENSCSEG00000001275)	ENSCSEG00000001281	ENSCSEG00000001287	RAB3B (ENSCSEG00000001290)	nrd1b (ENSCSEG00000001310)	ttll9 (ENSCSEG00000001500)	SAMD9 (ENSCSEG00000001506)	frem1b (ENSCSEG00000001512)	nfia (ENSCSEG00000001541) ##22	tm2d1 (ENSCSEG00000001546)	PATJ (ENSCSEG00000001551)	ENSCSEG00000001559	ENSCSEG00000001563	ATP11B (ENSCSEG00000001572)	sox2 (ENSCSEG00000001590)	fxr1 (ENSCSEG00000001597)	dnajc19 (ENSCSEG00000001630)	ENSCSEG00000001642	ttc14 (ENSCSEG00000001645)	hps3 (ENSCSEG00000001648)	bcar3 (ENSCSEG00000001676)	fnbp1l (ENSCSEG00000001689)	si:ch211-198n5.11 (ENSCSEG00000001712)	rpe65b (ENSCSEG00000001723)
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00950000183190.a.a.a.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00530000063749.c.a	ENSGT00940000162978.b	ENSGT00940000159915.a	ENSGT00950000182964.a.b.b.a.a.a.b
Zig-zag eel	MODERN SPECIES	18	ENSMAMG00000016269	ENSMAMG00000016264	ENSMAMG00000026734	ENSMAMG00000016221	ENSMAMG00000016206	ENSMAMG00000016192	ENSMAMG00000016179	ENSMAMG00000016169	DIRAS1 (ENSMAMG00000027387)	ENSMAMG00000026362	ENSMAMG00000016128	ENSMAMG00000016114	ENSMAMG00000027502	frem1b (ENSMAMG00000016024)	ENSMAMG00000028441	nfia (ENSMAMG00000015947) ##22	tm2d1 (ENSMAMG00000015915)	PATJ (ENSMAMG00000015832)	ENSMAMG00000027868	ENSMAMG00000015709	THOP1 (ENSMAMG00000015663)	ENSMAMG00000015621	SLC39A3 (ENSMAMG00000015606)	ENSMAMG00000015587	zgc:113223 (ENSMAMG00000015567)	reep6 (ENSMAMG00000015545)	ENSMAMG00000015528	ENSMAMG00000015485	ENSMAMG00000015518	ENSMAMG00000015463	ENSMAMG00000015431
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00940000165071	ENSGT00940000160006	ENSGT00400000024256	ENSGT00390000018319.a.b.b.b.a.a	ENSGT00940000175916	ENSGT00950000182964.a.b.b.a.a.a.b	ENSGT00940000159915.a	ENSGT00940000162978.b	ENSGT00530000063749.c.a	ENSGT00390000007991	ENSGT00940000161493	ENSGT00940000165051	ENSGT00940000166036	ENSGT00940000160231	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000177981	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00530000063498.B	ENSGT00730000111085.A	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a
Climbing perch	MODERN SPECIES	17	ENSATEG00000025253	ENSATEG00000005652	ENSATEG00000005644	ENSATEG00000005623	ENSATEG00000005614	ENSATEG00000005592	ENSATEG00000005579	ENSATEG00000005573	ENSATEG00000027781	ENSATEG00000026436	reep6 (ENSATEG00000005267)	zgc:113223 (ENSATEG00000005255)	ENSATEG00000005210	ENSATEG00000030140	frem1b (ENSATEG00000005029)	nfia (ENSATEG00000004979) ##22	tm2d1 (ENSATEG00000004946)	PATJ (ENSATEG00000004917)	ENSATEG00000026072	ENSATEG00000004827	ENSATEG00000004759	ENSATEG00000004709	ENSATEG00000004698	ENSATEG00000004678	ENSATEG00000004658	ENSATEG00000013279	ENSATEG00000004619	ENSATEG00000004608	ENSATEG00000004573	niban1a (ENSATEG00000004540)	kifap3a (ENSATEG00000004457)
Siamese fighting fish	MODERN SPECIES	15	EFNA2 (ENSBSLG00000014737)	ENSBSLG00000014748	ENSBSLG00000014751	ENSBSLG00000014772	ENSBSLG00000015146	ENSBSLG00000015209	gadd45ba (ENSBSLG00000015222)	APC2 (ENSBSLG00000015279)	ENSBSLG00000015399	ENSBSLG00000015405	reep6 (ENSBSLG00000015418)	zgc:113223 (ENSBSLG00000015538)	ENSBSLG00000015553	SLC39A3 (ENSBSLG00000015655)	ENSBSLG00000015664	nfia (ENSBSLG00000006813) ##22	ENSBSLG00000007289	tm2d1 (ENSBSLG00000007293)	PATJ (ENSBSLG00000007730)	ENSBSLG00000007757	thop1 (ENSBSLG00000008008)	sgta (ENSBSLG00000009554)	nrd1b (ENSBSLG00000009863)	ENSBSLG00000011312	orc1 (ENSBSLG00000011328)	prpf38a (ENSBSLG00000011340)	TRMT1L (ENSBSLG00000011357)	niban1a (ENSBSLG00000011377)	kifap3a (ENSBSLG00000011776)	ntmt2 (ENSBSLG00000012402)	ENSBSLG00000012437
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Pomacentridae	ANCESTRAL SPECIES	148	ENSGT00390000003182	ENSGT00940000160221.c	ENSGT00940000160580.a	ENSGT00940000167285	ENSGT00390000003821	ENSGT00940000160280.c	ENSGT00390000013329	ENSGT00940000177694	ENSGT00940000177712	ENSGT00940000155528.t.d.a	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000177981	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Spiny chromis	MODERN SPECIES	1396															frem1b (ENSAPOG00000022631)	ENSAPOG00000022546 ##22
Amphiprion	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Clown anemonefish	MODERN SPECIES	362																ENSAOCG00000021336 ##22
Bicolor damselfish	MODERN SPECIES	1465										ENSSPAG00000011238	ENSSPAG00000011250	ENSSPAG00000011291	nrd1b (ENSSPAG00000011313)	ENSSPAG00000011377	frem1b (ENSSPAG00000011417)	nfia (ENSSPAG00000011706) ##22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Carangaria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Seriola	ANCESTRAL SPECIES		ENSGT00440000033640.h.b	ENSGT00940000156211.a.a	ENSGT00940000155705.b	ENSGT00940000156259.a.a	ENSGT00940000158851	ENSGT00530000063632.A	ENSGT00950000182946.lb.b.h	ENSGT00730000114327	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT01090000260361	ENSGT00940000155136.mc	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.b.a.b.a.c.a.a.b.a	ENSGT00980000198678.m	ENSGT01070000253760.b.a.a.a.b.d.i.a.a.a.b	ENSGT01030000234837	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493
Greater amberjack	MODERN SPECIES	73	PIK3R3 (ENSSDUG00000001043)	TSPAN1 (ENSSDUG00000001125)	pomgnt1 (ENSSDUG00000001159)	ENSSDUG00000001259	ENSSDUG00000001273	ENSSDUG00000001287	ENSSDUG00000001300	ENSSDUG00000001316	prpf38a (ENSSDUG00000001324)	orc1 (ENSSDUG00000001337)	ENSSDUG00000001424	ENSSDUG00000001445	nrd1b (ENSSDUG00000001481)	ENSSDUG00000001570	frem1b (ENSSDUG00000001589)	nfia (ENSSDUG00000001711) ##22
Yellowtail amberjack	MODERN SPECIES	1360																nfia (ENSSLDG00000010384) ##22
Eupercaria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Fugu	MODERN SPECIES	12	PIK3R3 (ENSTRUG00000000148)	MAST2 (ENSTRUG00000026427)	ENSTRUG00000003483	ENSTRUG00000020341	gorab (ENSTRUG00000033490)	ntmt2 (ENSTRUG00000001965)	niban1a (ENSTRUG00000002101)	TRMT1L (ENSTRUG00000002396)	prpf38a (ENSTRUG00000003374)	orc1 (ENSTRUG00000003887)	ENSTRUG00000030568	ENSTRUG00000027475	ENSTRUG00000026216	nrd1b (ENSTRUG00000028772)	ENSTRUG00000030817	nfia (ENSTRUG00000013602) ##22	ENSTRUG00000000240	ENSTRUG00000029944	ENSTRUG00000024309	thop1 (ENSTRUG00000011770)	sgta (ENSTRUG00000011490)	SLC39A3 (ENSTRUG00000011464)	ENSTRUG00000026827	ENSTRUG00000011065	zgc:113223 (ENSTRUG00000010996)	reep6 (ENSTRUG00000010913)	ENSTRUG00000022750	gadd45ba (ENSTRUG00000010851)	ENSTRUG00000010776	serpinc1 (ENSTRUG00000010570)	ENSTRUG00000010492
Eupecaria_A	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Ballan wrasse	MODERN SPECIES	1322																nfia (ENSLBEG00000026385) ##22
Eupecaria_B	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00950000183190.a.a.b.c.b	ENSGT00950000183190.a.a.a.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22	ENSGT00950000182916.a.b.a.a.a.a.e.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000154660.b ##23	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00940000162978.b	ENSGT00530000063749.c.a
Gilthead seabream	MODERN SPECIES	2	ENSSAUG00010007557	MAST2 (ENSSAUG00010013481)	PIK3R3 (ENSSAUG00010012678)	TSPAN1 (ENSSAUG00010012652)	pomgnt1 (ENSSAUG00010012601)	ENSSAUG00010012596	ENSSAUG00010012593	ENSSAUG00010012588	prpf38a (ENSSAUG00010012580)	ENSSAUG00010012577	orc1 (ENSSAUG00010012555)	ENSSAUG00010012544	nrd1b (ENSSAUG00010012143)	ENSSAUG00010012117	frem1b (ENSSAUG00010011803)	nfia (ENSSAUG00010011785) ##22	tm2d1 (ENSSAUG00010011781)	PATJ (ENSSAUG00010011777)	pdzk1ip1 (ENSSAUG00010011769) ##23	ENSSAUG00010011766	thop1 (ENSSAUG00010006587)	sgta (ENSSAUG00010006487)	SLC39A3 (ENSSAUG00010006485)	ENSSAUG00010006484	ENSSAUG00010006380	zgc:113223 (ENSSAUG00010006369)	reep6 (ENSSAUG00010006366)	C19orf25 (ENSSAUG00010006361)	APC2 (ENSSAUG00010006359)	DIRAS1 (ENSSAUG00010006353)	gadd45ba (ENSSAUG00010006349)
Perciformes	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00950000183190.a.a.a.b	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00950000182946.lb.b.g	ENSGT00730000111085.A	ENSGT00530000063498.B	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.b ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000154660.b ##23	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000161493	ENSGT00390000007991	ENSGT00530000063749.c.a	ENSGT00940000159915.a
Pike perch	MODERN SPECIES	453																nfia (ENSSLUG00000007640) ##22
Channel bull blenny	MODERN SPECIES	18	ENSCGOG00000000369	ENSCGOG00000000364	prpf38a (ENSCGOG00000000361)	ENSCGOG00000000355	ENSCGOG00000000352	ENSCGOG00000000350	prpf38a (ENSCGOG00000000341)	orc1 (ENSCGOG00000000258)	ENSCGOG00000000092	nrd1b (ENSCGOG00000020985)	ENSCGOG00000020962	ENSCGOG00000020961	ENSCGOG00000020946	ENSCGOG00000020940	frem1b (ENSCGOG00000020929)	nfia (ENSCGOG00000020924) ##22	tm2d1 (ENSCGOG00000020920)	PATJ (ENSCGOG00000020905)	pdzk1ip1 (ENSCGOG00000020899) ##23	ENSCGOG00000020896	ENSCGOG00000020894	thop1 (ENSCGOG00000019444)	sgta (ENSCGOG00000019367)	SLC39A3 (ENSCGOG00000019366)	ENSCGOG00000019291	zgc:113223 (ENSCGOG00000019287)	reep6 (ENSCGOG00000019284)	ENSCGOG00000019283	ENSCGOG00000019281	APC2 (ENSCGOG00000019279)	DIRAS1 (ENSCGOG00000019274)
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.f ##22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.f ##22
Atherinomorphae	ANCESTRAL SPECIES	40	ENSGT00390000000289	ENSGT00940000161021.a.a	ENSGT00390000013329	ENSGT00940000160280.c	ENSGT00390000003821	ENSGT00940000167285	ENSGT00940000160580.a	ENSGT00940000160221.c	ENSGT00390000003182	ENSGT00940000158998	ENSGT00940000156750	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.f ##22	ENSGT00940000157668	ENSGT01030000237075	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000178474	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051
Cyprinodontiformes	ANCESTRAL SPECIES	52	ENSGT00390000000289	ENSGT00940000161021.a.a	ENSGT00390000013329	ENSGT00940000160280.c	ENSGT00390000003821	ENSGT00940000167285	ENSGT00940000160580.a	ENSGT00940000160221.c	ENSGT00390000003182	ENSGT00940000158998	ENSGT00940000156750	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.f ##22	ENSGT00940000157668	ENSGT01030000237075	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000178474	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051
Aplocheiloidei	ANCESTRAL SPECIES	292															ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.f ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000236110	ENSGT00940000166794
Mangrove rivulus	MODERN SPECIES	177	optn (ENSKMAG00000021499)	ccdc3a (ENSKMAG00000021491)	camk1da (ENSKMAG00000021481)	cdc123 (ENSKMAG00000021459)	nudt5 (ENSKMAG00000021449)	fbxo18 (ENSKMAG00000021437)	ENSKMAG00000021425	rbm17 (ENSKMAG00000021400)	pfkfb3 (ENSKMAG00000021371)	ntf3 (ENSKMAG00000021347)	ano2b (ENSKMAG00000021289)	TMTC1 (ENSKMAG00000021252)	ENSKMAG00000021209	ENSKMAG00000021193	frem1b (ENSKMAG00000021141)	nfia (ENSKMAG00000021119) ##22	tm2d1 (ENSKMAG00000021109)	ENSKMAG00000021094	ENSKMAG00000021071	ENSKMAG00000021063	ENSKMAG00000021053	ENSKMAG00000021036
Turquoise killifish	MODERN SPECIES	925															ENSNFUG00015010537	nfia (ENSNFUG00015010541) ##22
Cyprinodontoidei	ANCESTRAL SPECIES	43	ENSGT00390000000289	ENSGT00940000161021.a.a	ENSGT00390000013329	ENSGT00940000160280.c	ENSGT00390000003821	ENSGT00940000167285	ENSGT00940000160580.a	ENSGT00940000160221.c	ENSGT00390000003182	ENSGT00940000158998	ENSGT00940000156750	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.f ##22	ENSGT00940000157668	ENSGT01030000237075	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000157046.D.d.d.a.a.b.b.b	ENSGT00950000182946.lb.b.g.w.b	ENSGT00950000182946.lb.b.g.w.a	ENSGT00530000063632.A
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00940000157639	ENSGT00390000000289	ENSGT00940000161021.a.a	ENSGT00390000013329	ENSGT00940000160280.c	ENSGT00390000003821	ENSGT00940000167285	ENSGT00940000160580.a	ENSGT00940000160221.c	ENSGT00390000003182	ENSGT00940000158998	ENSGT00940000156750	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.f ##22	ENSGT00940000157668	ENSGT01030000237075	ENSGT00940000155136	ENSGT01030000236110	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT00940000157046.D.d.d.a.a.b.b.b	ENSGT00940000165051	ENSGT00940000166036	ENSGT00940000160231	ENSGT00940000159037	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.b.b	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.b	ENSGT01100000263489.a.a.b.b.f.a.a.d
Platyfish	MODERN SPECIES	23	wdr18 (ENSXMAG00000025228)	ENSXMAG00000026968	GRIN3B (ENSXMAG00000024525)	TMEM259 (ENSXMAG00000011819)	PLPPR3 (ENSXMAG00000010730)	med16 (ENSXMAG00000010740)	ENSXMAG00000021418	palm1a (ENSXMAG00000010751)	MAP1S (ENSXMAG00000010760)	trmt13 (ENSXMAG00000010765)	lrrc39 (ENSXMAG00000010769)	dbt (ENSXMAG00000010778)	ENSXMAG00000010794	nrd1b (ENSXMAG00000013972)	frem1b (ENSXMAG00000013988)	nfia (ENSXMAG00000000348) ##22	tm2d1 (ENSXMAG00000022708)	PATJ (ENSXMAG00000010706)	ENSXMAG00000028897	ENSXMAG00000010720	ENSXMAG00000026136	thop1 (ENSXMAG00000000356)	ENSXMAG00000021361	si:ch1073-67j19.2 (ENSXMAG00000024828)	ENSXMAG00000019638	ENSXMAG00000023184	ENSXMAG00000028601	ENSXMAG00000022137	ENSXMAG00000019898	zgc:113223 (ENSXMAG00000000120)	ENSXMAG00000000102
NAME_4	ANCESTRAL SPECIES	194	ENSGT00390000000289	ENSGT00940000161021.a.a	ENSGT00390000013329	ENSGT00940000160280.c	ENSGT00390000003821	ENSGT00940000167285	ENSGT00940000160580.a	ENSGT00940000160221.c	ENSGT00390000003182	ENSGT00940000158998	ENSGT00940000156750	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.f ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b	ENSGT01030000234852.c.b
Mummichog	MODERN SPECIES	310				ENSFHEG00000023215	PLPPR3 (ENSFHEG00000023115)	med16 (ENSFHEG00000023076)	ENSFHEG00000023023	palm1a (ENSFHEG00000022989)	trmt13 (ENSFHEG00000022954)	lrrc39 (ENSFHEG00000000563)	dbt (ENSFHEG00000000686)	ENSFHEG00000022464	NRDC (ENSFHEG00000022451)	ENSFHEG00000022405	frem1b (ENSFHEG00000022380)	nfia (ENSFHEG00000022297) ##22	tm2d1 (ENSFHEG00000022271)	ENSFHEG00000022259	ENSFHEG00000022203	ENSFHEG00000022050	ENSFHEG00000022043	ENSFHEG00000022003	ENSFHEG00000021967	ENSFHEG00000021948	thop1 (ENSFHEG00000021926)	ENSFHEG00000021869	ENSFHEG00000021859	ENSFHEG00000021822	ENSFHEG00000021815	ENSFHEG00000021807	ENSFHEG00000000916
Sheepshead minnow	MODERN SPECIES	248													ENSCVAG00000012598	ENSCVAG00000012606	frem1b (ENSCVAG00000012628)	nfia (ENSCVAG00000012667) ##22	tm2d1 (ENSCVAG00000012715)	ENSCVAG00000012782	ENSCVAG00000012831	ENSCVAG00000000336	ENSCVAG00000012920	ENSCVAG00000012934	ENSCVAG00000012942	thop1 (ENSCVAG00000012981)	ENSCVAG00000012993	ENSCVAG00000013001	ENSCVAG00000013337	ENSCVAG00000013367	ENSCVAG00000013382	fstl4 (ENSCVAG00000013427)	C5orf15 (ENSCVAG00000013434)
Oryzias	ANCESTRAL SPECIES	5	ENSGT00510000049120	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a	ENSGT00550000074980	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb	ENSGT00940000160221.c	ENSGT00390000003182.f	ENSGT00940000158998	ENSGT00940000156750	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.f ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000236110	ENSGT00940000166794	ENSGT00940000159402	ENSGT00940000164855	ENSGT00410000025556.a.b	ENSGT00940000164897.a.a	ENSGT00390000005717.t	ENSGT00940000155212.ab.b	ENSGT00970000193372.a.a.tc.b	ENSGT00940000161181.d	ENSGT00940000157355.d	ENSGT00940000159407.r	ENSGT00940000154164.d
Oryzias_b	ANCESTRAL SPECIES	26	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a	ENSGT00550000074980	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.b.kb.e	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb	ENSGT00940000160221.c	ENSGT00390000003182.f	ENSGT00940000158998	ENSGT00940000156750	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.f ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000236110	ENSGT00940000166794	ENSGT00940000159402	ENSGT00940000164855	ENSGT00410000025556.a.b	ENSGT00940000164897.a.a	ENSGT00390000005717.t	ENSGT00940000155212.ab.b	ENSGT00970000193372.a.a.tc.b	ENSGT00940000161181.d	ENSGT00940000157355.d	ENSGT00940000159407.r	ENSGT00940000154164.d
Javanese ricefish	MODERN SPECIES	18	ENSOJAG00000012881	ENSOJAG00000012955	ENSOJAG00000012992	zgc:172121 (ENSOJAG00000012996)	ENSOJAG00000013007	hyi (ENSOJAG00000013036)	ENSOJAG00000000279	ENSOJAG00000000568	MAP1S (ENSOJAG00000000848)	trmt13 (ENSOJAG00000000854)	lrrc39 (ENSOJAG00000000863)	dbt (ENSOJAG00000000870)	ENSOJAG00000000878	ENSOJAG00000000888	frem1b (ENSOJAG00000001136)	nfia (ENSOJAG00000001201) ##22	tm2d1 (ENSOJAG00000001319)	ENSOJAG00000001338	ENSOJAG00000001346	chd1l (ENSOJAG00000001382)	ENSOJAG00000001447	ENSOJAG00000001455	ENSOJAG00000001459	cldn33b (ENSOJAG00000001475)	ENSOJAG00000001477	SHROOM2 (ENSOJAG00000001479)	ENSOJAG00000001488	ENSOJAG00000001496	RS1 (ENSOJAG00000001508)	CDKL5 (ENSOJAG00000001516)	ENSOJAG00000001528
Indian medaka	MODERN SPECIES	34	SEMA5B (ENSOMEG00000006995)	ENSOMEG00000006951	frem1b (ENSOMEG00000006926)	nrd1b (ENSOMEG00000006863)	ENSOMEG00000006814	dbt (ENSOMEG00000006766)	trmt13 (ENSOMEG00000006724)	lrrc39 (ENSOMEG00000006670)	MAP1S (ENSOMEG00000006655)	ENSOMEG00000006635	ptprfa (ENSOMEG00000006564)	hyi (ENSOMEG00000006509)	SZT2 (ENSOMEG00000006474)	ENSOMEG00000006341	ENSOMEG00000006327	nfia (ENSOMEG00000006281) ##22	tm2d1 (ENSOMEG00000006104)	PATJ (ENSOMEG00000006067)	ENSOMEG00000005943	ENSOMEG00000005894	rorca (ENSOMEG00000005766)	sh3gl1b (ENSOMEG00000005735)	mpnd (ENSOMEG00000005690)	ENSOMEG00000005670	MUTYH (ENSOMEG00000005642)	ENSOMEG00000005615	ENSOMEG00000005587	ENSOMEG00000005570	ENSOMEG00000005557	ssbp3b (ENSOMEG00000005529)	acot11b (ENSOMEG00000005428)
Oryzias_a	ANCESTRAL SPECIES	71	ENSGT00940000158019	ENSGT00940000156453.b	ENSGT00390000011620.a.a.a	ENSGT00550000074980	ENSGT00390000018402	ENSGT00390000005462	ENSGT00940000155060.C.a.b	ENSGT00940000154930.eb	ENSGT00940000160221.c	ENSGT00390000003182.f	ENSGT00940000158998	ENSGT00940000156750	ENSGT00940000159943	ENSGT00940000155026.d	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.f ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000236110	ENSGT00940000166794
Japanese Medaka HdrR	MODERN SPECIES	18	ENSORLG00000003073	ENSORLG00000003078	SZT2 (ENSORLG00000003146)	hyi (ENSORLG00000003173)	ptprfa (ENSORLG00000003198)	ENSORLG00000003264	MAP1S (ENSORLG00000003304)	trmt13 (ENSORLG00000003320)	lrrc39 (ENSORLG00000003329)	dbt (ENSORLG00000003352)	RAB3B (ENSORLG00000029024)	nrd1b (ENSORLG00000003474)	ENSORLG00000029015	frem1b (ENSORLG00000003500)	ENSORLG00000022989	nfia (ENSORLG00000003529) ##22	tm2d1 (ENSORLG00000026692)	ENSORLG00000003573	ENSORLG00000022230	ENSORLG00000026891	ENSORLG00000003585	ENSORLG00000003602	ENSORLG00000027767	chd1l (ENSORLG00000003673)	ENSORLG00000003685	wwc3 (ENSORLG00000003745)	rorca (ENSORLG00000003765)	sh3gl1b (ENSORLG00000003835)	mpnd (ENSORLG00000003849)	ENSORLG00000025255	MUTYH (ENSORLG00000003859)
Chinese medaka	MODERN SPECIES	593		ENSOSIG00000006905	ENSOSIG00000006906	hyi (ENSOSIG00000006908)	ENSOSIG00000006909	ENSOSIG00000006910	ENSOSIG00000006911	ENSOSIG00000006913	MAP1S (ENSOSIG00000006914)	trmt13 (ENSOSIG00000006915)	lrrc39 (ENSOSIG00000006916)	dbt (ENSOSIG00000006917)	RAB3B (ENSOSIG00000006918)	frem1b (ENSOSIG00000006927)	ENSOSIG00000006929	nfia (ENSOSIG00000006930) ##22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.f ##22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.f ##22
Carangaria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.f ##22
Pleuronectoidei	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.f ##22
Turbot	MODERN SPECIES	3	prrx1b (ENSSMAG00000015646)	gorab (ENSSMAG00000015639)	ntmt2 (ENSSMAG00000015625)	kifap3a (ENSSMAG00000015597)	niban1a (ENSSMAG00000015548)	ENSSMAG00000015425	ENSSMAG00000025993	ENSSMAG00000036494	ENSSMAG00000034311	ENSSMAG00000024407	ENSSMAG00000015379	ENSSMAG00000015352	ENSSMAG00000037635	ENSSMAG00000015337	ENSSMAG00000015223	ENSSMAG00000015125 ##22	ENSSMAG00000022039	ENSSMAG00000037770	ENSSMAG00000014281	ENSSMAG00000014318	ENSSMAG00000014353	ENSSMAG00000014372	ENSSMAG00000014405	ENSSMAG00000014436	ENSSMAG00000023188	ENSSMAG00000014458	dbt (ENSSMAG00000014505)	ENSSMAG00000014545	trmt13 (ENSSMAG00000014592)	ENSSMAG00000014633	ENSSMAG00000027568
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.f ##22
Barramundi perch	MODERN SPECIES	1343																ENSLCAG00010001587 ##22
Protacanthopterygii	ANCESTRAL SPECIES	47					ENSGT00940000163422	ENSGT00940000154611.bd	ENSGT00940000159228.a.a	ENSGT00940000159902	ENSGT01030000234614.B.b	ENSGT00390000005554	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000155026.d	ENSGT00940000159943	ENSGT00390000012765	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01030000234837	ENSGT00940000159889.b.b.a.b	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000160024.d	ENSGT00390000003860.gb	ENSGT00940000163316	ENSGT00940000155505.a.b	ENSGT00940000154587.a.a	ENSGT01050000244898.a.a.b	ENSGT01050000244838.H.d.d	ENSGT00940000154290.a.f
Northern pike	MODERN SPECIES	7	fam174c (ENSELUG00000003188)	ENSELUG00000003180	ENSELUG00000003154	RABGAP1L (ENSELUG00000003131)	fam163ab (ENSELUG00000003114)	ENSELUG00000003097	nphs2 (ENSELUG00000003072)	axdnd1 (ENSELUG00000003065)	ENSELUG00000003041	ENSELUG00000028004	nrd1b (ENSELUG00000003025)	ENSELUG00000002993	atpaf1 (ENSELUG00000002985)	frem1b (ENSELUG00000002969)	ENSELUG00000025403	nfia (ENSELUG00000002944) ##22	tm2d1 (ENSELUG00000001039)	PATJ (ENSELUG00000002898)	ENSELUG00000029987	tal1 (ENSELUG00000002865)	XCR1 (ENSELUG00000001339)	FYCO1 (ENSELUG00000002841)	ENSELUG00000002811	GHRHR (ENSELUG00000000074)	ENSELUG00000002760	ENSELUG00000032334	uqcrh (ENSELUG00000002741)	ENSELUG00000031031	ENSELUG00000002728	ndufa7 (ENSELUG00000002735)	ENSELUG00000002717
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	785														ENSGT00940000159943.h	ENSGT00390000012765.c	ENSGT00950000182916.a.b.a.a.a.a.g.a ##22	ENSGT00940000157668.p	ENSGT00940000155136.kb.b	ENSGT01030000234837.a	ENSGT00940000159889.b.b.a.b.a	ENSGT01090000260052.a.b.j.h	ENSGT00940000154044.a.a.q.a.g.b	ENSGT00940000159858.b
Huchen	MODERN SPECIES	2910																nfia (ENSHHUG00000039527) ##22
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00900000141021.a.d	ENSGT00940000155528.t.d.a.c	ENSGT01050000244924.a.a.b.a.a.d	ENSGT00530000064649.a	ENSGT00940000165071.c	ENSGT00940000154611.ad.a.c.b	ENSGT00940000163422.a	ENSGT00940000154611.bd	ENSGT00940000159228.a.a.b	ENSGT00940000159902	ENSGT00390000005554	ENSGT01100000263556.b.a.a	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000159943.h	ENSGT00390000012765.c	ENSGT00950000182916.a.b.a.a.a.a.g.a ##22	ENSGT00940000157668.p	ENSGT00940000155136.kb.b	ENSGT01030000234837.a	ENSGT00940000159889.b.b.a.b.a	ENSGT01090000260052.a.b.j.h	ENSGT00940000154044.a.a.q.a.g.b	ENSGT00940000159858.b	ENSGT00940000160024.d.a	ENSGT00940000154573.eb	ENSGT00950000182879.a.a	ENSGT00960000186850.b.b.b	ENSGT00390000003860.gb.h	ENSGT00940000163316.s	ENSGT00940000155505.a.b.f	ENSGT00940000154587.a.a
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00900000141021.a.d	ENSGT00940000155528.t.d.a.c	ENSGT01050000244924.a.a.b.a.a.d	ENSGT00530000064649.a	ENSGT00940000160040.B.b.b	ENSGT00940000165071.c	ENSGT00940000154611.bd	ENSGT00940000163422.a	ENSGT00940000159228.a.a.b	ENSGT00940000159902	ENSGT00390000005554	ENSGT01100000263556.b.a.a	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000159943.h	ENSGT00390000012765.c	ENSGT00950000182916.a.b.a.a.a.a.g.a ##22	ENSGT00940000157668.p	ENSGT00940000155136.kb.b	ENSGT01030000234837.a	ENSGT00940000159889.b.b.a.b.a	ENSGT01090000260052.a.b.j.h	ENSGT00940000154044.a.a.q.a.g.b	ENSGT00940000159858.b	ENSGT00940000160024.d.a	ENSGT00940000154573.eb	ENSGT00950000182879.a.a	ENSGT00960000186850.b.b.b	ENSGT00390000003860.gb.h	ENSGT00940000163316.s	ENSGT00940000155505.a.b.f	ENSGT00940000154587.a.a
Rainbow trout	MODERN SPECIES		ENSOMYG00000007584	ENSOMYG00000056081	ENSOMYG00000007495	ENSOMYG00000069160	ENSOMYG00000006423	FAM163A (ENSOMYG00000005029)	ENSOMYG00000005017	ENSOMYG00000066248	axdnd1 (ENSOMYG00000004924)	ENSOMYG00000004873	ENSOMYG00000052708	ENSOMYG00000074160	ENSOMYG00000075308	atpaf1 (ENSOMYG00000004787)	ENSOMYG00000053425	nfia (ENSOMYG00000004657) ##22	tm2d1 (ENSOMYG00000004606)	ENSOMYG00000064297	PATJ (ENSOMYG00000004583)	ENSOMYG00000071077	tal1 (ENSOMYG00000004513)	ENSOMYG00000004503	ENSOMYG00000060476	ENSOMYG00000004435	ENSOMYG00000076441	ENSOMYG00000004261	ENSOMYG00000004120	ENSOMYG00000004113	ENSOMYG00000004065	ENSOMYG00000004051	ENSOMYG00000003997
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00940000155528.t.d.a.c	ENSGT01050000244924.a.a.b.a.a.d	ENSGT00530000064649.a	ENSGT00940000160040.B.b.a.b	ENSGT00940000160040.B.b.b	ENSGT00940000165071.c	ENSGT00940000154611.bd	ENSGT00940000163422.a	ENSGT00940000159228.a.a.b	ENSGT00940000159902	ENSGT00390000005554	ENSGT01100000263556.b.a.a	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000159943.h	ENSGT00390000012765.c	ENSGT00950000182916.a.b.a.a.a.a.g.a ##22	ENSGT00940000155136.kb.b	ENSGT01030000234837.a	ENSGT00940000159889.b.b.a.b.a	ENSGT01090000260052.a.b.j.h	ENSGT00940000154044.a.a.q.a.g.b	ENSGT00940000159858.b	ENSGT00940000160024.d.a	ENSGT00940000154573.eb	ENSGT00950000182879.a.a	ENSGT00960000186850.b.b.b	ENSGT00390000003860.gb.h	ENSGT00940000163316.s	ENSGT00940000155505.a.b.f	ENSGT00940000154587.a.a	ENSGT01050000244898.a.a.b.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	30	stil (ENSOTSG00005034591)	stx6 (ENSOTSG00005034590)	ier5 (ENSOTSG00005034588)	ENSOTSG00005034480	PTBP1 (ENSOTSG00005033493)	fam174c (ENSOTSG00005033490)	GPR52 (ENSOTSG00005033488)	ENSOTSG00005032902	fam163ab (ENSOTSG00005032895)	ENSOTSG00005032893	axdnd1 (ENSOTSG00005032891)	ENSOTSG00005032890	ENSOTSG00005032889	ENSOTSG00005032887	atpaf1 (ENSOTSG00005032885)	nfia (ENSOTSG00005032881) ##22	ENSOTSG00005032876	ENSOTSG00005032871	tal1 (ENSOTSG00005032870)	XCR1 (ENSOTSG00005032868)	FYCO1 (ENSOTSG00005032863)	ENSOTSG00005032857	ENSOTSG00005032856	ENSOTSG00005032854	ENSOTSG00005032853	ENSOTSG00005032852	DMBX1 (ENSOTSG00005032850)	mknk1 (ENSOTSG00005032811)	mob3c (ENSOTSG00005032810)	elovl1b (ENSOTSG00005032808)	ENSOTSG00005032807
Chinook salmon	MODERN SPECIES	29	ENSOTSG00005023759	stx6 (ENSOTSG00005023757)	ier5 (ENSOTSG00005023756)	ENSOTSG00005023516	ptbp1b (ENSOTSG00005021720)	fam174c (ENSOTSG00005021718)	ENSOTSG00005021717	ENSOTSG00005019962	RABGAP1L (ENSOTSG00005013267)	fam163ab (ENSOTSG00005013256)	nphs2 (ENSOTSG00005013255)	nrd1b (ENSOTSG00005008839)	ENSOTSG00005008831	atpaf1 (ENSOTSG00005008829)	frem1b (ENSOTSG00005008828)	nfia (ENSOTSG00005008780) ##22	tm2d1 (ENSOTSG00005008769)	PATJ (ENSOTSG00005008768)	ENSOTSG00005008767	tal1 (ENSOTSG00005008765)	XCR1 (ENSOTSG00005008764)	FYCO1 (ENSOTSG00005008760)	ENSOTSG00005008633	ENSOTSG00005008632	ENSOTSG00005008631	uqcrh (ENSOTSG00005008630)	ENSOTSG00005047649	DMBX1 (ENSOTSG00005047648)	mob3c (ENSOTSG00005047646)	elovl1b (ENSOTSG00005047645)	ENSOTSG00005047644
Coho salmon	MODERN SPECIES	24	ENSOKIG00005026122	ptbp1b (ENSOKIG00005004139)	ENSOKIG00005004105	ENSOKIG00005004097	ENSOKIG00005004094	ENSOKIG00005003911	GPR52 (ENSOKIG00005003889)	ENSOKIG00005003236	fam163ab (ENSOKIG00005003131)	ENSOKIG00005003121	axdnd1 (ENSOKIG00005003112)	ENSOKIG00005003107	ENSOKIG00005003100	ENSOKIG00005003081	atpaf1 (ENSOKIG00005003064)	nfia (ENSOKIG00005003046) ##22	ENSOKIG00005003031	ENSOKIG00005003021	ENSOKIG00005002987	tal1 (ENSOKIG00005002969)	pdzk1ip1 (ENSOKIG00005002961) ##23	XCR1 (ENSOKIG00005002959)	FYCO1 (ENSOKIG00005002944)	ENSOKIG00005002766	ENSOKIG00005002728	ENSOKIG00005002721	ENSOKIG00005002710	ENSOKIG00005002693	ENSOKIG00005002674	dmbx1b (ENSOKIG00005002662)	mknk1 (ENSOKIG00005002521)
Salmo	ANCESTRAL SPECIES	9	ENSGT00900000141021.a.d	ENSGT00940000155528.t.d.a.c	ENSGT01050000244924.a.a.b.a.a.d	ENSGT00530000064649.a	ENSGT00940000165071.c	ENSGT00940000154611.ad.a.c.b	ENSGT00940000163422.a	ENSGT00940000154611.bd	ENSGT00940000159228.a.a.b	ENSGT00940000159902	ENSGT00390000005554	ENSGT01100000263556.b.a.a	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000159943.h	ENSGT00390000012765.c	ENSGT00950000182916.a.b.a.a.a.a.g.a ##22	ENSGT00940000157668.p	ENSGT00940000155136.kb.b	ENSGT01030000234837.a	ENSGT00940000159889.b.b.a.b.a	ENSGT01090000260052.a.b.j.h	ENSGT00940000154044.a.a.q.a.g.b	ENSGT00940000159858.b	ENSGT00940000160024.d.a	ENSGT00940000154573.eb	ENSGT00950000182879.a.a	ENSGT00960000186850.b.b.b	ENSGT00390000003860.gb.h	ENSGT00940000163316.s	ENSGT00940000155505.a.b.f	ENSGT00940000154587.a.a
Atlantic salmon	MODERN SPECIES	7	serpinc1 (ENSSSAG00000008142)	rc3h1a (ENSSSAG00000008147)	ENSSSAG00000010026	ENSSSAG00000108447	ENSSSAG00000010050	ptbp1b (ENSSSAG00000010193)	ENSSSAG00000090764	ENSSSAG00000034928	ENSSSAG00000037596	ENSSSAG00000093861	fam163ab (ENSSSAG00000095216)	ENSSSAG00000043004	axdnd1 (ENSSSAG00000043025)	ENSSSAG00000043104	atpaf1 (ENSSSAG00000096927)	nfia (ENSSSAG00000096019) ##22	ENSSSAG00000087807	tm2d1 (ENSSSAG00000121028)	PATJ (ENSSSAG00000043932)	ENSSSAG00000088981	ENSSSAG00000044276	ENSSSAG00000044291	tal1 (ENSSSAG00000044296)	ENSSSAG00000096789	ENSSSAG00000044315	ENSSSAG00000044685	ENSSSAG00000044727	ENSSSAG00000044739	QCR6 (ENSSSAG00000044798)	ENSSSAG00000044838	ENSSSAG00000092908
River trout	MODERN SPECIES	8	ENSSTUG00000044844	ptbp1b (ENSSTUG00000044182)	fam174c (ENSSTUG00000044154)	ENSSTUG00000044152	ENSSTUG00000044143	ENSSTUG00000043833	GPR52 (ENSSTUG00000043818)	ENSSTUG00000040956	fam163ab (ENSSTUG00000040831)	ENSSTUG00000040796	axdnd1 (ENSSTUG00000040619)	ENSSTUG00000040578	ENSSTUG00000040570	ENSSTUG00000040526	atpaf1 (ENSSTUG00000040488)	nfia (ENSSTUG00000040478) ##22	tm2d1 (ENSSTUG00000040452)	ENSSTUG00000040445	PATJ (ENSSTUG00000040337)	ENSSTUG00000040325	tal1 (ENSSTUG00000040318)	XCR1 (ENSSTUG00000040311)	FYCO1 (ENSSTUG00000040197)	ENSSTUG00000040130	ENSSTUG00000040115	ENSSTUG00000040102	ENSSTUG00000040083	ENSSTUG00000040058	ENSSTUG00000040004	dmbx1b (ENSSTUG00000039987)	mknk1 (ENSSTUG00000039874)
Salmoninae	ANCESTRAL SPECIES	41	ENSGT00940000157639.s	ENSGT00900000141021.a.c	ENSGT00940000155528.t.d.a.d	ENSGT01050000244924.a.a.b.a.a.c	ENSGT00530000064649.b	ENSGT00940000160040.B.b	ENSGT00940000165071.d	ENSGT00940000154611.ad.a.c.a	ENSGT00940000163422.b	ENSGT00940000159228.a.a.a	ENSGT01030000234614.B.b	ENSGT00940000155026.d	ENSGT00940000159943.g	ENSGT00390000012765.d	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.g.b ##22	ENSGT00940000157668.o	ENSGT00940000155136.kb.a	ENSGT01030000234837.b	ENSGT00940000159889.b.b.a.b.b	ENSGT01090000260052.a.b.j.g	ENSGT00940000154044.a.a.q.a.g.a	ENSGT00940000159858.a	ENSGT00940000164218	ENSGT00940000160024.d.b	ENSGT00960000186850.b.b.a	ENSGT00940000163316.t	ENSGT00940000155505.a.b.e	ENSGT00990000210619	ENSGT01050000244898.a.a.b.a	ENSGT01050000244838.H.d.d.c
Huchen	MODERN SPECIES	95	ENSHHUG00000051352	stx6 (ENSHHUG00000051351)	ier5 (ENSHHUG00000051349)	ENSHHUG00000051341	ptbp1b (ENSHHUG00000051022)	ENSHHUG00000051015	ENSHHUG00000051011	ENSHHUG00000050975	ENSHHUG00000050962	fam163ab (ENSHHUG00000050957)	nphs2 (ENSHHUG00000050948)	nrd1b (ENSHHUG00000050706)	ENSHHUG00000050694	atpaf1 (ENSHHUG00000050679)	frem1b (ENSHHUG00000050623)	nfia (ENSHHUG00000050606) ##22
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00940000157639.s	ENSGT00900000141021.a.c	ENSGT00940000155528.t.d.a.d	ENSGT01050000244924.a.a.b.a.a.c	ENSGT00530000064649.b	ENSGT00940000160040.B.b	ENSGT00940000165071.d	ENSGT00940000154611.ad.a.c.a	ENSGT00940000163422.b	ENSGT00940000159228.a.a.a	ENSGT01030000234614.B.b	ENSGT00940000155026.d	ENSGT00940000159943.g	ENSGT00390000012765.d	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.g.b ##22	ENSGT00940000157668.o	ENSGT00940000155136.kb.a	ENSGT01030000234837.b	ENSGT00940000159889.b.b.a.b.b	ENSGT01090000260052.a.b.j.g	ENSGT00940000154044.a.a.q.a.g.a	ENSGT00940000159858.a	ENSGT00940000164218	ENSGT00940000160024.d.b	ENSGT00960000186850.b.b.a	ENSGT00390000003860.gb.g	ENSGT00940000163316.t	ENSGT00940000155505.a.b.e	ENSGT00990000210619	ENSGT01050000244898.a.a.b.a
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00940000157639.s	ENSGT00900000141021.a.c	ENSGT00940000155528.t.d.a.d	ENSGT01050000244924.a.a.b.a.a.c	ENSGT00530000064649.b	ENSGT00940000160040.B.b.a.a	ENSGT00940000165071.d	ENSGT00940000154611.ad.a.c.a	ENSGT00940000163422.b	ENSGT00940000159228.a.a.a	ENSGT01030000234614.B.b	ENSGT00940000155026.d	ENSGT00940000159943.g	ENSGT00390000012765.d	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.g.b ##22	ENSGT00940000157668.o	ENSGT00940000155136.kb.a	ENSGT01030000234837.b	ENSGT00940000159889.b.b.a.b.b	ENSGT01090000260052.a.b.j.g	ENSGT00940000154044.a.a.q.a.g.a	ENSGT00940000159858.a	ENSGT00940000164218	ENSGT00940000160024.d.b	ENSGT00960000186850.b.b.a	ENSGT00390000003860.gb.g	ENSGT00940000163316.t	ENSGT00940000155505.a.b.e	ENSGT00990000210619	ENSGT01050000244898.a.a.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000157639.s	ENSGT00900000141021.a.c	ENSGT00940000155528.t.d.a.d	ENSGT01050000244924.a.a.b.a.a.c	ENSGT00530000064649.b	ENSGT00940000160040.B.b.a.a	ENSGT00940000165071.d	ENSGT00940000154611.ad.a.c.a	ENSGT00940000163422.b	ENSGT00940000159228.a.a.a	ENSGT01030000234614.B.b	ENSGT00940000155026.d	ENSGT00940000159943.g	ENSGT00390000012765.d	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.g.b ##22	ENSGT00940000157668.o	ENSGT00940000155136.kb.a	ENSGT01030000234837.b	ENSGT00940000159889.b.b.a.b.b	ENSGT01090000260052.a.b.j.g	ENSGT00940000154044.a.a.q.a.g.a	ENSGT00940000159858.a	ENSGT00940000164218	ENSGT00940000167711.a.b	ENSGT00940000160024.d.b	ENSGT00960000186850.b.b.a	ENSGT00390000003860.gb.g	ENSGT00940000163316.t	ENSGT00940000155505.a.b.e	ENSGT00990000210619
Coho salmon	MODERN SPECIES	4	ier5 (ENSOKIG00005016416)	ENSOKIG00005016436	ptbp1b (ENSOKIG00005016698)	fam174c (ENSOKIG00005017485)	ENSOKIG00005017493	ENSOKIG00005003852	ENSOKIG00005003884	ENSOKIG00005004230	GPR52 (ENSOKIG00005004726)	fam163ab (ENSOKIG00005004740)	nphs2 (ENSOKIG00005004747)	nrd1b (ENSOKIG00005004920)	ENSOKIG00005007957	atpaf1 (ENSOKIG00005007980)	frem1b (ENSOKIG00005008055)	nfia (ENSOKIG00005008673) ##22	tm2d1 (ENSOKIG00005009114)	PATJ (ENSOKIG00005009159)	ENSOKIG00005009581	tal1 (ENSOKIG00005009587)	ENSOKIG00005009592	FYCO1 (ENSOKIG00005009620)	ENSOKIG00005009743	ENSOKIG00005009754	ENSOKIG00005009771	DMBX1 (ENSOKIG00005009864)	ENSOKIG00005009867	mob3c (ENSOKIG00005009874)	elovl1b (ENSOKIG00005009886)	ENSOKIG00005009899	btf3l4 (ENSOKIG00005009916)
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000066672	ENSOMYG00000029584	ENSOMYG00000028148	ENSOMYG00000071617	ENSOMYG00000064535	ENSOMYG00000026682	ENSOMYG00000067194	ENSOMYG00000025555	fam163ab (ENSOMYG00000025221)	nphs2 (ENSOMYG00000025210)	nrd1b (ENSOMYG00000023122)	ENSOMYG00000059299	atpaf1 (ENSOMYG00000022632)	frem1b (ENSOMYG00000022312)	ENSOMYG00000077049	nfia (ENSOMYG00000022032) ##22	ENSOMYG00000021959	tm2d1 (ENSOMYG00000021950)	PATJ (ENSOMYG00000021761)	ENSOMYG00000051891	tal1 (ENSOMYG00000021673)	ENSOMYG00000021666	ENSOMYG00000021645	ENSOMYG00000021508	ENSOMYG00000050123	ENSOMYG00000021435	ENSOMYG00000021400	ENSOMYG00000021326	ENSOMYG00000068498	ENSOMYG00000021316	mob3c (ENSOMYG00000021309)
Salmo	ANCESTRAL SPECIES	14	ENSGT00940000157639.s	ENSGT00900000141021.a.c	ENSGT00940000155528.t.d.a.d	ENSGT01050000244924.a.a.b.a.a.c	ENSGT00530000064649.b	ENSGT00940000160040.B.b	ENSGT00940000165071.d	ENSGT00940000163422.b	ENSGT00940000154611.ad.a.c.a	ENSGT00940000159228.a.a.a	ENSGT01030000234614.B.b	ENSGT00940000155026.d	ENSGT00940000159943.g	ENSGT00390000012765.d	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.g.b ##22	ENSGT00940000157668.o	ENSGT00940000155136.kb.a	ENSGT01030000234837.b	ENSGT00940000159889.b.b.a.b.b	ENSGT01090000260052.a.b.j.g	ENSGT00940000154044.a.a.q.a.g.a	ENSGT00940000159858.a	ENSGT00940000164218	ENSGT00940000160024.d.b	ENSGT00390000003860.gb.g	ENSGT00940000163316.t	ENSGT00940000155505.a.b.e	ENSGT00990000210619	ENSGT01050000244898.a.a.b.a	ENSGT01050000244838.H.d.d.c
River trout	MODERN SPECIES	14	ier5 (ENSSTUG00000017333)	ENSSTUG00000017041	ptbp1b (ENSSTUG00000015758)	fam174c (ENSSTUG00000015651)	ENSSTUG00000015638	ENSSTUG00000015634	ENSSTUG00000014766	RABGAP1L (ENSSTUG00000011995)	fam163ab (ENSSTUG00000011899)	ENSSTUG00000011866	nphs2 (ENSSTUG00000011858)	nrd1b (ENSSTUG00000009867)	ENSSTUG00000009788	atpaf1 (ENSSTUG00000009769)	frem1b (ENSSTUG00000009321)	nfia (ENSSTUG00000009175) ##22	tm2d1 (ENSSTUG00000009125)	PATJ (ENSSTUG00000009038)	ENSSTUG00000009018	tal1 (ENSSTUG00000009006)	XCR1 (ENSSTUG00000009001)	FYCO1 (ENSSTUG00000008811)	GHRHR (ENSSTUG00000008775)	ENSSTUG00000008760	ENSSTUG00000008748	ENSSTUG00000008723	ENSSTUG00000008654	DMBX1 (ENSSTUG00000008640)	ENSSTUG00000008632	mob3c (ENSSTUG00000008625)	elovl1b (ENSSTUG00000008612)
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000115648	ier5 (ENSSSAG00000082055)	ENSSSAG00000115055	ptbp1b (ENSSSAG00000041000)	ENSSSAG00000040896	ENSSSAG00000040879	ENSSSAG00000086245	ENSSSAG00000040467	ENSSSAG00000088960	ENSSSAG00000038528	fam163ab (ENSSSAG00000077645)	nphs2 (ENSSSAG00000081931)	nrd1b (ENSSSAG00000075825)	atpaf1 (ENSSSAG00000075779)	frem1b (ENSSSAG00000075725)	nfia (ENSSSAG00000085371) ##22	tm2d1 (ENSSSAG00000108257)	PATJ (ENSSSAG00000075664)	tal1 (ENSSSAG00000075661)	ENSSSAG00000107070	ENSSSAG00000075658	ENSSSAG00000075646	ENSSSAG00000075403	ENSSSAG00000075383	ENSSSAG00000075376	QCR6 (ENSSSAG00000075360)	ENSSSAG00000075343	ENSSSAG00000075333	ENSSSAG00000109386	ENSSSAG00000107967	mob3c (ENSSSAG00000006189)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.h ##22
Huchen	MODERN SPECIES	8929																ENSHHUG00000002000 ##22
Sarcopterygii	ANCESTRAL SPECIES	89	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00940000157721	ENSGT00410000029447	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00390000008678	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468
Coelacanth	MODERN SPECIES	1327															ENSLACG00000005544	NFIA (ENSLACG00000004873) ##22
Tetrapoda	ANCESTRAL SPECIES	8	ENSGT00940000176055	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00940000157721	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00390000008678	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568	ENSGT00940000158648
Amniota	ANCESTRAL SPECIES	9	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b	ENSGT00390000008678	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Sauria	ANCESTRAL SPECIES	7	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Lizard	DUPLICATION
Lizard	MODERN SPECIES	3	OMA1 (ENSACAG00000007036)	TACSTD2 (ENSACAG00000007049) ##36	ENSACAG00000007052	JUN (ENSACAG00000007057)	ENSACAG00000036523	FGGY (ENSACAG00000007068)	ENSACAG00000029052	HOOK1 (ENSACAG00000007111)	ENSACAG00000034926	ENSACAG00000007240	ENSACAG00000035284	ENSACAG00000043177	ENSACAG00000034728	ENSACAG00000040732	ENSACAG00000026737	ENSACAG00000017087 ##22	ENSACAG00000007677 ##22	TM2D1 (ENSACAG00000038877)	PATJ (ENSACAG00000007792)	KANK4 (ENSACAG00000007807)	USP1 (ENSACAG00000007833)	ANGPTL3 (ENSACAG00000022908)	DOCK7 (ENSACAG00000007870)	ATG4C (ENSACAG00000008101)	ENSACAG00000034691	ENSACAG00000022097	ENSACAG00000039980	ALG6 (ENSACAG00000008132)	ENSACAG00000044958	ENSACAG00000029342	EFCAB7 (ENSACAG00000008144)
Lizard	MODERN SPECIES	3	TACSTD2 (ENSACAG00000007049) ##36	ENSACAG00000007052	JUN (ENSACAG00000007057)	ENSACAG00000036523	FGGY (ENSACAG00000007068)	ENSACAG00000029052	HOOK1 (ENSACAG00000007111)	ENSACAG00000034926	ENSACAG00000007240	ENSACAG00000035284	ENSACAG00000043177	ENSACAG00000034728	ENSACAG00000040732	ENSACAG00000026737	ENSACAG00000017087 ##22	ENSACAG00000007677 ##22	TM2D1 (ENSACAG00000038877)	PATJ (ENSACAG00000007792)	KANK4 (ENSACAG00000007807)	USP1 (ENSACAG00000007833)	ANGPTL3 (ENSACAG00000022908)	DOCK7 (ENSACAG00000007870)	ATG4C (ENSACAG00000008101)	ENSACAG00000034691	ENSACAG00000022097	ENSACAG00000039980	ALG6 (ENSACAG00000008132)	ENSACAG00000044958	ENSACAG00000029342	EFCAB7 (ENSACAG00000008144)	PGM1 (ENSACAG00000008181)
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136.bb.b	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568	ENSGT00940000158648	ENSGT00940000157092
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	2	PLPP3 (ENSNNAG00000010354)	PRKAA2 (ENSNNAG00000010373)	C8A (ENSNNAG00000010399)	C8B (ENSNNAG00000010427)	DAB1 (ENSNNAG00000010470)	ENSNNAG00000010634	OMA1 (ENSNNAG00000010724)	TACSTD2 (ENSNNAG00000010748) ##36	MYSM1 (ENSNNAG00000010769)	ENSNNAG00000010866	JUN (ENSNNAG00000011183)	FGGY (ENSNNAG00000011194)	ENSNNAG00000011231	HOOK1 (ENSNNAG00000011247)	ENSNNAG00000011318 ##22	ENSNNAG00000011408 ##22	TM2D1 (ENSNNAG00000011456)	PATJ (ENSNNAG00000011539)	KANK4 (ENSNNAG00000011718)	USP1 (ENSNNAG00000011759)	DOCK7 (ENSNNAG00000012070)	ANGPTL3 (ENSNNAG00000016124)	ATG4C (ENSNNAG00000016146)	FOXD3 (ENSNNAG00000016171)	ALG6 (ENSNNAG00000016183)	ENSNNAG00000016201	PGM1 (ENSNNAG00000016220)	ROR1 (ENSNNAG00000016256)	CACHD1 (ENSNNAG00000016329)	RAVER2 (ENSNNAG00000016550)	ENSNNAG00000016582
Indian cobra	MODERN SPECIES	2	USP24 (ENSNNAG00000008780)	PLPP3 (ENSNNAG00000010354)	PRKAA2 (ENSNNAG00000010373)	C8A (ENSNNAG00000010399)	C8B (ENSNNAG00000010427)	DAB1 (ENSNNAG00000010470)	ENSNNAG00000010634	OMA1 (ENSNNAG00000010724)	TACSTD2 (ENSNNAG00000010748) ##36	MYSM1 (ENSNNAG00000010769)	ENSNNAG00000010866	JUN (ENSNNAG00000011183)	FGGY (ENSNNAG00000011194)	ENSNNAG00000011231	HOOK1 (ENSNNAG00000011247)	ENSNNAG00000011318 ##22	ENSNNAG00000011408 ##22	TM2D1 (ENSNNAG00000011456)	PATJ (ENSNNAG00000011539)	KANK4 (ENSNNAG00000011718)	USP1 (ENSNNAG00000011759)	DOCK7 (ENSNNAG00000012070)	ANGPTL3 (ENSNNAG00000016124)	ATG4C (ENSNNAG00000016146)	FOXD3 (ENSNNAG00000016171)	ALG6 (ENSNNAG00000016183)	ENSNNAG00000016201	PGM1 (ENSNNAG00000016220)	ROR1 (ENSNNAG00000016256)	CACHD1 (ENSNNAG00000016329)	RAVER2 (ENSNNAG00000016550)
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136.bb.a	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568	ENSGT00940000158648	ENSGT00940000157092
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00490000043472	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136.bb.a	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568	ENSGT00940000158648	ENSGT00940000157092
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	107																ENSPTXG00000018638 ##22	ENSPTXG00000018639	ENSPTXG00000018640	ENSPTXG00000018641	ENSPTXG00000018642	ENSPTXG00000018658	ENSPTXG00000018828	ENSPTXG00000018829	ENSPTXG00000018830	ENSPTXG00000018832	ENSPTXG00000018834	ENSPTXG00000018836	ENSPTXG00000018838	ENSPTXG00000018841	ENSPTXG00000018843	ENSPTXG00000018846
Eastern brown snake	MODERN SPECIES	109																ENSPTXG00000018924 ##22	ENSPTXG00000018925	ENSPTXG00000018926	ENSPTXG00000018927	ENSPTXG00000018928	ENSPTXG00000018929	ENSPTXG00000018930	ENSPTXG00000018931	ENSPTXG00000018932	ENSPTXG00000018933	ENSPTXG00000018934	ENSPTXG00000018935	ENSPTXG00000018936	ENSPTXG00000012470	ENSPTXG00000012478	ENSPTXG00000012489
Mainland tiger snake	MODERN SPECIES	13	PLPP3 (ENSNSUG00000001100)	PRKAA2 (ENSNSUG00000001101)	C8A (ENSNSUG00000001124)	C8B (ENSNSUG00000001128)	DAB1 (ENSNSUG00000001131)	ENSNSUG00000001139	OMA1 (ENSNSUG00000001146)	TACSTD2 (ENSNSUG00000001167) ##36	MYSM1 (ENSNSUG00000001168)	ENSNSUG00000001545	JUN (ENSNSUG00000001560)	ENSNSUG00000001561	ENSNSUG00000001566	ENSNSUG00000001575	ENSNSUG00000001582	NFIA (ENSNSUG00000001588) ##22	TM2D1 (ENSNSUG00000001608)	ENSNSUG00000001619	ENSNSUG00000001645	KANK4 (ENSNSUG00000001661)	USP1 (ENSNSUG00000001666)	ENSNSUG00000001668	ENSNSUG00000001670	ENSNSUG00000001673	ANGPTL3 (ENSNSUG00000001680)	ATG4C (ENSNSUG00000001683)	ENSNSUG00000001687	FOXD3 (ENSNSUG00000001688)	ALG6 (ENSNSUG00000001690)	ITGB3BP (ENSNSUG00000001806)	PGM1 (ENSNSUG00000001809)
Blue-lipped sea krait	MODERN SPECIES	2738																NFIA (ENSLLTG00000001927) ##22
Laterata	ANCESTRAL SPECIES	3	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00390000008678	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	31	TACSTD2 (ENSSMRG00000018024) ##36	MYSM1 (ENSSMRG00000018025)	ENSSMRG00000018027	JUN (ENSSMRG00000018029)	FGGY (ENSSMRG00000018032)	ENSSMRG00000018035	HOOK1 (ENSSMRG00000018038)	ENSSMRG00000018039	ENSSMRG00000018040	ENSSMRG00000018041	ENSSMRG00000018042	ENSSMRG00000018045	ENSSMRG00000018047	C1orf87 (ENSSMRG00000018049)	ENSSMRG00000018050	ENSSMRG00000018056 ##22	ENSSMRG00000018057 ##22	ENSSMRG00000018058	TM2D1 (ENSSMRG00000018059)	PATJ (ENSSMRG00000018061)	ENSSMRG00000018263	KANK4 (ENSSMRG00000018264)	USP1 (ENSSMRG00000018265)	DOCK7 (ENSSMRG00000018266)	ANGPTL3 (ENSSMRG00000018270)	ATG4C (ENSSMRG00000018271)	FOXD3 (ENSSMRG00000018273)	ALG6 (ENSSMRG00000018274)	ITGB3BP (ENSSMRG00000018275)	EFCAB7 (ENSSMRG00000018276)	PGM1 (ENSSMRG00000018277)
Argentine black and white tegu	MODERN SPECIES	31	MYSM1 (ENSSMRG00000018025)	ENSSMRG00000018027	JUN (ENSSMRG00000018029)	FGGY (ENSSMRG00000018032)	ENSSMRG00000018035	HOOK1 (ENSSMRG00000018038)	ENSSMRG00000018039	ENSSMRG00000018040	ENSSMRG00000018041	ENSSMRG00000018042	ENSSMRG00000018045	ENSSMRG00000018047	C1orf87 (ENSSMRG00000018049)	ENSSMRG00000018050	ENSSMRG00000018056 ##22	ENSSMRG00000018057 ##22	ENSSMRG00000018058	TM2D1 (ENSSMRG00000018059)	PATJ (ENSSMRG00000018061)	ENSSMRG00000018263	KANK4 (ENSSMRG00000018264)	USP1 (ENSSMRG00000018265)	DOCK7 (ENSSMRG00000018266)	ANGPTL3 (ENSSMRG00000018270)	ATG4C (ENSSMRG00000018271)	FOXD3 (ENSSMRG00000018273)	ALG6 (ENSSMRG00000018274)	ITGB3BP (ENSSMRG00000018275)	EFCAB7 (ENSSMRG00000018276)	PGM1 (ENSSMRG00000018277)	ROR1 (ENSSMRG00000018278)
Common wall lizard	MODERN SPECIES	14	TACSTD2 (ENSPMRG00000003988) ##36	ENSPMRG00000003952	MYSM1 (ENSPMRG00000003902)	FGGY (ENSPMRG00000003883)	ENSPMRG00000003879	HOOK1 (ENSPMRG00000003797)	ENSPMRG00000003769	ENSPMRG00000003759	ENSPMRG00000003749	ENSPMRG00000003732	ENSPMRG00000015689	ENSPMRG00000015680	ENSPMRG00000015664	ENSPMRG00000015652	ENSPMRG00000015533	NFIA (ENSPMRG00000015474) ##22	TM2D1 (ENSPMRG00000015459)	PATJ (ENSPMRG00000015351)	KANK4 (ENSPMRG00000015316)	USP1 (ENSPMRG00000015310)	ANGPTL3 (ENSPMRG00000015301)	DOCK7 (ENSPMRG00000011757)	ATG4C (ENSPMRG00000011290)	FOXD3 (ENSPMRG00000011286)	ENSPMRG00000011282	ALG6 (ENSPMRG00000011277)	ITGB3BP (ENSPMRG00000011267)	EFCAB7 (ENSPMRG00000011260)	PGM1 (ENSPMRG00000011249)	ENSPMRG00000011246	ROR1 (ENSPMRG00000011243)
tuatara	MODERN SPECIES	1725	PRKAA2 (ENSSPUG00000015209)	C8A (ENSSPUG00000015270)	C8B (ENSSPUG00000015456)	DAB1 (ENSSPUG00000015507)	ENSSPUG00000015556	ENSSPUG00000015591	TACSTD2 (ENSSPUG00000015625) ##36	MYSM1 (ENSSPUG00000015634)	JUN (ENSSPUG00000015656)	ENSSPUG00000015662	ENSSPUG00000015688	ENSSPUG00000015735	HOOK1 (ENSSPUG00000015753)	CYP2J2 (ENSSPUG00000015786)	ENSSPUG00000015817	NFIA (ENSSPUG00000015850) ##22	TM2D1 (ENSSPUG00000015914)	PATJ (ENSSPUG00000015943)	ENSSPUG00000015981	USP1 (ENSSPUG00000015992)	DOCK7 (ENSSPUG00000016024)	ANGPTL3 (ENSSPUG00000016117)	ATG4C (ENSSPUG00000016128)	ALG6 (ENSSPUG00000016166)	ITGB3BP (ENSSPUG00000016183)	EFCAB7 (ENSSPUG00000016231)	PGM1 (ENSSPUG00000016368)	ROR1 (ENSSPUG00000016382)	UBE2U (ENSSPUG00000016397)	CACHD1 (ENSSPUG00000016415)	RAVER2 (ENSSPUG00000016441)
Archelosauria	ANCESTRAL SPECIES	9	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Cryptodira	ANCESTRAL SPECIES	8	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668.g	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Emydidae	ANCESTRAL SPECIES	22	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668.g	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	97														ENSTMTG00000022302	ENSTMTG00000022294	ENSTMTG00000022290 ##22	ENSTMTG00000022285	ENSTMTG00000022270	ENSTMTG00000022254	ENSTMTG00000022250	ENSTMTG00000022246	ENSTMTG00000021690	ENSTMTG00000021554	ENSTMTG00000021552	ENSTMTG00000021547	ENSTMTG00000021539	ENSTMTG00000021518	ENSTMTG00000021506	ENSTMTG00000021497	ENSTMTG00000021492	ENSTMTG00000021422
Three-toed box turtle	MODERN SPECIES	98														ENSTMTG00000021677	ENSTMTG00000021657	ENSTMTG00000021509 ##22	ENSTMTG00000021463	ENSTMTG00000021443	ENSTMTG00000021437	ENSTMTG00000021425	ENSTMTG00000021413	ENSTMTG00000021400	ENSTMTG00000017136	ENSTMTG00000016577	ENSTMTG00000016568	ENSTMTG00000016554	ENSTMTG00000016541	ENSTMTG00000016529	ENSTMTG00000016515	ENSTMTG00000016476	ENSTMTG00000016442
painted turtle	MODERN SPECIES	698										ENSCPBG00000013944	ENSCPBG00000013946	ENSCPBG00000013947	ENSCPBG00000013948	C1orf87 (ENSCPBG00000013949)	ENSCPBG00000013952	NFIA (ENSCPBG00000013953) ##22	TM2D1 (ENSCPBG00000013955)	PATJ (ENSCPBG00000013956)	KANK4 (ENSCPBG00000013958)	USP1 (ENSCPBG00000013960)	DOCK7 (ENSCPBG00000014002)	ANGPTL3 (ENSCPBG00000014200)	ATG4C (ENSCPBG00000014206)	ALG6 (ENSCPBG00000014218)	ITGB3BP (ENSCPBG00000014219)	EFCAB7 (ENSCPBG00000014221)	PGM1 (ENSCPBG00000014225)	PLPP3 (ENSCPBG00000014230)	PRKAA2 (ENSCPBG00000014232)	ENSCPBG00000014235	C8A (ENSCPBG00000014237)
Testudinidae	ANCESTRAL SPECIES	33	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT00940000175231	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00390000008678	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668.g	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Goode s thornscrub tortoise	MODERN SPECIES	22	ENSGEVG00005020865	OMA1 (ENSGEVG00005020860)	MYSM1 (ENSGEVG00005020849)	ENSGEVG00005020835	JUN (ENSGEVG00005020828)	FGGY (ENSGEVG00005020824)	HOOK1 (ENSGEVG00005020811)	ENSGEVG00005020795	ENSGEVG00005020776	ENSGEVG00005020762	ENSGEVG00005020753	ENSGEVG00005020736	ENSGEVG00005020724	C1orf87 (ENSGEVG00005020715)	ENSGEVG00005020704	NFIA (ENSGEVG00005020696) ##22	TM2D1 (ENSGEVG00005020691)	PATJ (ENSGEVG00005020682)	ENSGEVG00005020678	USP1 (ENSGEVG00005020673)	ANGPTL3 (ENSGEVG00005020668)	DOCK7 (ENSGEVG00005016039)	ATG4C (ENSGEVG00005013428)	FOXD3 (ENSGEVG00005013403)	ALG6 (ENSGEVG00005013369)	ITGB3BP (ENSGEVG00005013329)	EFCAB7 (ENSGEVG00005013265)	PGM1 (ENSGEVG00005013164)	ROR1 (ENSGEVG00005012980)	UBE2U (ENSGEVG00005012901)	CACHD1 (ENSGEVG00005011807)
Abingdon island giant tortoise	MODERN SPECIES	1894											ENSCABG00000023137	C1orf87 (ENSCABG00000023136)	ENSCABG00000023135	PREB (ENSCABG00000023133)	ENSCABG00000023132	NFIA (ENSCABG00000023129) ##22	TM2D1 (ENSCABG00000023128)	PATJ (ENSCABG00000023127)	KANK4 (ENSCABG00000023126)	USP1 (ENSCABG00000023125)	ENSCABG00000023124	ENSCABG00000023123	ANGPTL3 (ENSCABG00000023122)	ENSCABG00000023121	ATG4C (ENSCABG00000023120)	FOXD3 (ENSCABG00000023119)	ALG6 (ENSCABG00000023118)	ENSCABG00000023117	EFCAB7 (ENSCABG00000023116)	PGM1 (ENSCABG00000023115)	ROR1 (ENSCABG00000023113)
Chinese turtle	MODERN SPECIES	1793													ENSPSIG00000004885	C1orf87 (ENSPSIG00000005300)	ENSPSIG00000000901	NFIA (ENSPSIG00000005327) ##22	TM2D1 (ENSPSIG00000006049)	ENSPSIG00000006213	ENSPSIG00000006366	ENSPSIG00000006511
Archosauria	ANCESTRAL SPECIES	11	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Australian saltwater crocodile	MODERN SPECIES	28	PRKAA2 (ENSCPRG00005005735)	C8A (ENSCPRG00005005765)	C8B (ENSCPRG00005005779)	DAB1 (ENSCPRG00005005820)	OMA1 (ENSCPRG00005005880)	TACSTD2 (ENSCPRG00005005890) ##36	MYSM1 (ENSCPRG00005005893)	ENSCPRG00005005915	JUN (ENSCPRG00005005941)	FGGY (ENSCPRG00005005982)	ENSCPRG00005006008	ENSCPRG00005006012	ENSCPRG00005006015	HOOK1 (ENSCPRG00005006021)	ENSCPRG00005006037	NFIA (ENSCPRG00005006091) ##22	TM2D1 (ENSCPRG00005006123)	ENSCPRG00005006132	ENSCPRG00005006180	KANK4 (ENSCPRG00005006242)	USP1 (ENSCPRG00005006270)	DOCK7 (ENSCPRG00005006744)	ANGPTL3 (ENSCPRG00005010939)	ENSCPRG00005010941	ATG4C (ENSCPRG00005010945)	ALG6 (ENSCPRG00005010969)	ENSCPRG00005010995	EFCAB7 (ENSCPRG00005011001)	PGM1 (ENSCPRG00005011014)	ROR1 (ENSCPRG00005011020)	UBE2U (ENSCPRG00005011024)
Aves	ANCESTRAL SPECIES	7	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
African ostrich	MODERN SPECIES	220								MYSM1 (ENSSCUG00000003863)	ENSSCUG00000003874	JUN (ENSSCUG00000003887)	FGGY (ENSSCUG00000003894)	ENSSCUG00000003902	HOOK1 (ENSSCUG00000003921)	ENSSCUG00000003927	ENSSCUG00000003930	NFIA (ENSSCUG00000003935) ##22	TM2D1 (ENSSCUG00000003936)	PATJ (ENSSCUG00000003939)	KANK4 (ENSSCUG00000003944)	USP1 (ENSSCUG00000003948)	DOCK7 (ENSSCUG00000004056)	ANGPTL3 (ENSSCUG00000004167)	ATG4C (ENSSCUG00000004168)	ENSSCUG00000004171	ITGB3BP (ENSSCUG00000004172)	ALG6 (ENSSCUG00000004174)	EFCAB7 (ENSSCUG00000004175)	PGM1 (ENSSCUG00000004179)	ROR1 (ENSSCUG00000004189)	UBE2U (ENSSCUG00000004193)	CACHD1 (ENSSCUG00000004203)
Neognathae	ANCESTRAL SPECIES	8	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568	ENSGT00940000158648
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568	ENSGT00940000158648
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568	ENSGT00940000158648
Great tit	MODERN SPECIES	28	PRKAA2 (ENSPMJG00000003302)	ENSPMJG00000003308	C8A (ENSPMJG00000003324)	C8B (ENSPMJG00000003344)	DAB1 (ENSPMJG00000003356)	ENSPMJG00000003410	OMA1 (ENSPMJG00000003416)	TACSTD2 (ENSPMJG00000003433) ##36	MYSM1 (ENSPMJG00000003434)	ENSPMJG00000003443	JUN (ENSPMJG00000003457)	FGGY (ENSPMJG00000003463)	HOOK1 (ENSPMJG00000003572)	ENSPMJG00000003575	ENSPMJG00000003577	NFIA (ENSPMJG00000003614) ##22	TM2D1 (ENSPMJG00000003648)	PATJ (ENSPMJG00000003672)	KANK4 (ENSPMJG00000004587)	USP1 (ENSPMJG00000004620)	DOCK7 (ENSPMJG00000004670)	ANGPTL3 (ENSPMJG00000012329)	ATG4C (ENSPMJG00000012330)	FOXD3 (ENSPMJG00000012331)	ALG6 (ENSPMJG00000012332)	ITGB3BP (ENSPMJG00000012333)	EFCAB7 (ENSPMJG00000012335)	PGM1 (ENSPMJG00000012336)	ENSPMJG00000012337	ROR1 (ENSPMJG00000012338)	ENSPMJG00000012339
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i.f	ENSGT00950000182879.b.i.e.a	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT01040000244779	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568
Flycatcher	MODERN SPECIES	27	ENSFALG00000012284	C8A (ENSFALG00000012292)	C8B (ENSFALG00000012302)	DAB1 (ENSFALG00000012314)	OMA1 (ENSFALG00000012337)	TACSTD2 (ENSFALG00000015097) ##36	MYSM1 (ENSFALG00000012350)	ENSFALG00000028195	JUN (ENSFALG00000015113)	FGGY (ENSFALG00000012370)	HOOK1 (ENSFALG00000012380)	ENSFALG00000012418	ENSFALG00000026411	ENSFALG00000012427	ENSFALG00000022904	NFIA (ENSFALG00000012430) ##22	ENSFALG00000028412	TM2D1 (ENSFALG00000026390)	PATJ (ENSFALG00000012456)	ENSFALG00000012483	USP1 (ENSFALG00000012495)	DOCK7 (ENSFALG00000012509)	ANGPTL3 (ENSFALG00000027664)	ATG4C (ENSFALG00000012535)	ALG6 (ENSFALG00000012546)	ITGB3BP (ENSFALG00000012567)	EFCAB7 (ENSFALG00000012572)	PGM1 (ENSFALG00000025774)	ROR1 (ENSFALG00000012605)	CACHD1 (ENSFALG00000012622)	ENSFALG00000026307
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i.f	ENSGT00950000182879.b.i.e.a	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT01040000244779	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568
Medium ground finch	MODERN SPECIES	48	USP24 (ENSGFOG00000000602)	PLPP3 (ENSGFOG00000000646)	PRKAA2 (ENSGFOG00000000654)	C8A (ENSGFOG00000000660)	C8B (ENSGFOG00000000673)	DAB1 (ENSGFOG00000000701)	OMA1 (ENSGFOG00000000743)	TACSTD2 (ENSGFOG00000000755) ##36	MYSM1 (ENSGFOG00000000763)	ENSGFOG00000000789	JUN (ENSGFOG00000000830)	FGGY (ENSGFOG00000000837)	HOOK1 (ENSGFOG00000000932)	ENSGFOG00000001304	ENSGFOG00000001322	NFIA (ENSGFOG00000001410) ##22	TM2D1 (ENSGFOG00000001485)	ENSGFOG00000001494	ENSGFOG00000001548	KANK4 (ENSGFOG00000001572)	USP1 (ENSGFOG00000001581)	DOCK7 (ENSGFOG00000002582)	ANGPTL3 (ENSGFOG00000013418)	ATG4C (ENSGFOG00000013423)	ALG6 (ENSGFOG00000013434)	ITGB3BP (ENSGFOG00000013448)	EFCAB7 (ENSGFOG00000013457)	PGM1 (ENSGFOG00000013462)	ROR1 (ENSGFOG00000013466)	ENSGFOG00000013469	CACHD1 (ENSGFOG00000013471)
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i.e.a	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT01040000244779	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568
Common canary	MODERN SPECIES	9	ENSSCAG00000006484	C8A (ENSSCAG00000006511)	C8B (ENSSCAG00000006532)	DAB1 (ENSSCAG00000006545)	OMA1 (ENSSCAG00000006570)	TACSTD2 (ENSSCAG00000006574) ##36	MYSM1 (ENSSCAG00000006576)	ENSSCAG00000006582	ENSSCAG00000006585	ENSSCAG00000006589	JUN (ENSSCAG00000006591)	FGGY (ENSSCAG00000006601)	HOOK1 (ENSSCAG00000006621)	ENSSCAG00000006628	ENSSCAG00000006630	NFIA (ENSSCAG00000006651) ##22	TM2D1 (ENSSCAG00000006671)	PATJ (ENSSCAG00000006679)	ENSSCAG00000006704	USP1 (ENSSCAG00000006713)	DOCK7 (ENSSCAG00000006729)	ANGPTL3 (ENSSCAG00000006769)	ATG4C (ENSSCAG00000006779)	FOXD3 (ENSSCAG00000006785)	ALG6 (ENSSCAG00000006788)	ITGB3BP (ENSSCAG00000006795)	EFCAB7 (ENSSCAG00000006806)	PGM1 (ENSSCAG00000006814)	ENSSCAG00000006819	ENSSCAG00000006829	CACHD1 (ENSSCAG00000006858)
Zebra finch	MODERN SPECIES	30	ENSTGUG00000009595	C8A (ENSTGUG00000009598)	C8B (ENSTGUG00000009617)	DAB1 (ENSTGUG00000009639)	OMA1 (ENSTGUG00000009657)	TACSTD2 (ENSTGUG00000009662) ##36	MYSM1 (ENSTGUG00000009663)	ENSTGUG00000022171	JUN (ENSTGUG00000009693)	FGGY (ENSTGUG00000009695)	HOOK1 (ENSTGUG00000009700)	ENSTGUG00000009722	ENSTGUG00000016903	ENSTGUG00000013940	ENSTGUG00000027591	NFIA (ENSTGUG00000009745) ##22	TM2D1 (ENSTGUG00000009771)	PATJ (ENSTGUG00000009783)	ENSTGUG00000023986	ENSTGUG00000028251	USP1 (ENSTGUG00000009799)	ANGPTL3 (ENSTGUG00000009863)	DOCK7 (ENSTGUG00000009812)	ATG4C (ENSTGUG00000009870)	FOXD3 (ENSTGUG00000028147)	ALG6 (ENSTGUG00000009888)	ENSTGUG00000009904	ENSTGUG00000009906	PGM1 (ENSTGUG00000018846)	ENSTGUG00000009942	ENSTGUG00000028636
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568	ENSGT00940000158648
Golden eagle	MODERN SPECIES	3	PRKAA2 (ENSACCG00020016984)	ENSACCG00020016999	C8A (ENSACCG00020017014)	C8B (ENSACCG00020017015)	DAB1 (ENSACCG00020017016)	OMA1 (ENSACCG00020017017)	TACSTD2 (ENSACCG00020017018) ##36	MYSM1 (ENSACCG00020017019)	ENSACCG00020017020	JUN (ENSACCG00020017021)	FGGY (ENSACCG00020017022)	ENSACCG00020017023	HOOK1 (ENSACCG00020017024)	ENSACCG00020017025	ENSACCG00020017026	NFIA (ENSACCG00020017028) ##22	TM2D1 (ENSACCG00020017029)	PATJ (ENSACCG00020017030)	KANK4 (ENSACCG00020017031)	USP1 (ENSACCG00020017032)	DOCK7 (ENSACCG00020017033)	ANGPTL3 (ENSACCG00020017034)	ATG4C (ENSACCG00020017035)	ENSACCG00020017036	FOXD3 (ENSACCG00020017037)	ALG6 (ENSACCG00020017038)	ITGB3BP (ENSACCG00020017039)	EFCAB7 (ENSACCG00020017040)	PGM1 (ENSACCG00020017041)	ROR1 (ENSACCG00020017042)	CACHD1 (ENSACCG00020017043)
Kakapo	MODERN SPECIES	25	PLPP3 (ENSSHBG00005005570)	PRKAA2 (ENSSHBG00005005582)	C8A (ENSSHBG00005005696)	C8B (ENSSHBG00005006084)	DAB1 (ENSSHBG00005006182)	OMA1 (ENSSHBG00005006681)	MYSM1 (ENSSHBG00005006699)	ENSSHBG00005006745	JUN (ENSSHBG00005006800)	FGGY (ENSSHBG00005006852)	HOOK1 (ENSSHBG00005006978)	ENSSHBG00005007019	ENSSHBG00005007065	ENSSHBG00005007084	ENSSHBG00005007122	NFIA (ENSSHBG00005007257) ##22	TM2D1 (ENSSHBG00005007443)	PATJ (ENSSHBG00005007846)	KANK4 (ENSSHBG00005011530)	USP1 (ENSSHBG00005011553)	DOCK7 (ENSSHBG00005011629)	ANGPTL3 (ENSSHBG00005011851)	ENSSHBG00005011870	FOXD3 (ENSSHBG00005011888)	ALG6 (ENSSHBG00005011906)	ITGB3BP (ENSSHBG00005011923)	EFCAB7 (ENSSHBG00005011937)	PGM1 (ENSSHBG00005011955)	ROR1 (ENSSHBG00005011980)	CACHD1 (ENSSHBG00005012051)	RAVER2 (ENSSHBG00005012257)
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568	ENSGT00940000158648
Anatidae	ANCESTRAL SPECIES	5	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038.h	ENSGT00390000007027	ENSGT00940000157721	ENSGT00940000165489.c	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568	ENSGT00940000158648
Duck	MODERN SPECIES	26	C8A (ENSAPLG00000008086)	C8B (ENSAPLG00000008037)	ENSAPLG00000007606	ENSAPLG00000030685	OMA1 (ENSAPLG00000006406)	MYSM1 (ENSAPLG00000006062)	ENSAPLG00000025227	ENSAPLG00000024240	JUN (ENSAPLG00000028301)	FGGY (ENSAPLG00000005579)	ENSAPLG00000030318	ENSAPLG00000005578	HOOK1 (ENSAPLG00000004631)	ENSAPLG00000003769	ENSAPLG00000003768	NFIA (ENSAPLG00000003407) ##22	TM2D1 (ENSAPLG00000003403)	ENSAPLG00000002853	ENSAPLG00000016679	USP1 (ENSAPLG00000002578)	ENSAPLG00000021191	ENSAPLG00000015722	ANGPTL3 (ENSAPLG00000001634)	ATG4C (ENSAPLG00000015314)	ALG6 (ENSAPLG00000014868)	ITGB3BP (ENSAPLG00000014813)	EFCAB7 (ENSAPLG00000014663)	PGM1 (ENSAPLG00000014087)	ROR1 (ENSAPLG00000013960)	CACHD1 (ENSAPLG00000013355)	RAVER2 (ENSAPLG00000013160)
Pink-footed goose	MODERN SPECIES	1	PLPP3 (ENSABRG00000022533)	PRKAA2 (ENSABRG00000022530)	ENSABRG00000022522	C8A (ENSABRG00000022520)	C8B (ENSABRG00000022517)	DAB1 (ENSABRG00000022488)	OMA1 (ENSABRG00000022473)	MYSM1 (ENSABRG00000022470)	ENSABRG00000022468	JUN (ENSABRG00000022465)	FGGY (ENSABRG00000022463)	ENSABRG00000022462	HOOK1 (ENSABRG00000022460)	ENSABRG00000022457	ENSABRG00000022451	NFIA (ENSABRG00000022372) ##22	TM2D1 (ENSABRG00000022358)	PATJ (ENSABRG00000022286)	KANK4 (ENSABRG00000022228)	USP1 (ENSABRG00000022213)	ANGPTL3 (ENSABRG00000022210)	DOCK7 (ENSABRG00000019817)	ATG4C (ENSABRG00000019118)	ENSABRG00000019030	FOXD3 (ENSABRG00000019027)	ALG6 (ENSABRG00000018752)	ITGB3BP (ENSABRG00000018646)	EFCAB7 (ENSABRG00000018592)	PGM1 (ENSABRG00000018513)	ROR1 (ENSABRG00000018481)	CACHD1 (ENSABRG00000018462)
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j.g.a.b.a	ENSGT00950000182879.b.j.g.a.a	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568	ENSGT00940000158648
Phasianidae_b	DUPLICATION
Phasianidae_b	ANCESTRAL SPECIES	7	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.b.j.g.b	ENSGT00950000182879.b.j.g.a.b.a	ENSGT00950000182879.b.j.g.a.a	ENSGT00950000182879.b.i	ENSGT00950000182916.a.b.a.a.a.a.s ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000157568	ENSGT00940000158648	ENSGT00940000157092.e
Chicken	MODERN SPECIES	37	ENSGALG00010026628	C8A (ENSGALG00010026635)	C8B (ENSGALG00010026700)	DAB1 (ENSGALG00010026740)	OMA1 (ENSGALG00010026759)	MYSM1 (ENSGALG00010026780)	FGGY (ENSGALG00010026839)	ENSGALG00010026870	JUN (ENSGALG00010026886)	ENSGALG00010026889	HOOK1 (ENSGALG00010026899)	CYP2J23 (ENSGALG00010027106)	ENSGALG00010026909	ENSGALG00010027108	ENSGALG00010026928	NFIA (ENSGALG00010024816) ##22	TM2D1 (ENSGALG00010023732)	PATJ (ENSGALG00010023806)	KANK4 (ENSGALG00010023821)	USP1 (ENSGALG00010023829)	DOCK7 (ENSGALG00010023869)	ANGPTL3 (ENSGALG00010023885)	ATG4C (ENSGALG00010024179)	ALG6 (ENSGALG00010024192)	ITGB3BP (ENSGALG00010024277)	EFCAB7 (ENSGALG00010024332)	PGM1 (ENSGALG00010024350)	ROR1 (ENSGALG00010024399)	CACHD1 (ENSGALG00010024449)	RAVER2 (ENSGALG00010024473)	JAK1 (ENSGALG00010024493)
Turkey	MODERN SPECIES	1	ENSMGAG00000011783	ENSMGAG00000011767	EFCAB7 (ENSMGAG00000011762)	ENSMGAG00000011751	ENSMGAG00000017106	ATG4C (ENSMGAG00000011740)	ENSMGAG00000021523	ENSMGAG00000011732	ENSMGAG00000011689	ENSMGAG00000011724	ENSMGAG00000021436	ENSMGAG00000011680	ENSMGAG00000011649	ENSMGAG00000011647	ENSMGAG00000011639 ##22	ENSMGAG00000021571 ##22	ENSMGAG00000018319	ENSMGAG00000021749	ENSMGAG00000011590	ENSMGAG00000018263	ENSMGAG00000011548	ENSMGAG00000018463	FGGY (ENSMGAG00000011533)	ENSMGAG00000022327	ENSMGAG00000011514	ENSMGAG00000022840	JUN (ENSMGAG00000011531)	OMA1 (ENSMGAG00000011510)	ENSMGAG00000015370 ##36	ENSMGAG00000022458	DAB1 (ENSMGAG00000011507)
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a.t ##22
Turkey	MODERN SPECIES	1	CACHD1 (ENSMGAG00000011794)	ENSMGAG00000011783	ENSMGAG00000011767	EFCAB7 (ENSMGAG00000011762)	ENSMGAG00000011751	ENSMGAG00000017106	ATG4C (ENSMGAG00000011740)	ENSMGAG00000021523	ENSMGAG00000011732	ENSMGAG00000011689	ENSMGAG00000011724	ENSMGAG00000021436	ENSMGAG00000011680	ENSMGAG00000011649	ENSMGAG00000011647	ENSMGAG00000011639 ##22	ENSMGAG00000021571 ##22	ENSMGAG00000018319	ENSMGAG00000021749	ENSMGAG00000011590	ENSMGAG00000018263	ENSMGAG00000011548	ENSMGAG00000018463	FGGY (ENSMGAG00000011533)	ENSMGAG00000022327	ENSMGAG00000011514	ENSMGAG00000022840	JUN (ENSMGAG00000011531)	OMA1 (ENSMGAG00000011510)	ENSMGAG00000015370 ##36	ENSMGAG00000022458
Japanese quail	MODERN SPECIES	26	ENSCJPG00005012336	OMA1 (ENSCJPG00005012337)	TACSTD2 (ENSCJPG00005012338) ##36	MYSM1 (ENSCJPG00005012339)	ENSCJPG00005012417	JUN (ENSCJPG00005012418)	FGGY (ENSCJPG00005012420)	ENSCJPG00005012421	HOOK1 (ENSCJPG00005012422)	ENSCJPG00005012423	ENSCJPG00005012424	ENSCJPG00005012425	ENSCJPG00005012426	ENSCJPG00005012427	ENSCJPG00005012428	NFIA (ENSCJPG00005012429) ##22	TM2D1 (ENSCJPG00005012430)	ENSCJPG00005012431	ENSCJPG00005012612	KANK4 (ENSCJPG00005012614)	USP1 (ENSCJPG00005012615)	DOCK7 (ENSCJPG00005012616)	ANGPTL3 (ENSCJPG00005014484)	ATG4C (ENSCJPG00005014485)	FOXD3 (ENSCJPG00005014487)	ALG6 (ENSCJPG00005014488)	ENSCJPG00005014489	EFCAB7 (ENSCJPG00005014490)	PGM1 (ENSCJPG00005014491)	ROR1 (ENSCJPG00005014492)	CACHD1 (ENSCJPG00005014494)
Mammalia	ANCESTRAL SPECIES	5	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00950000182879.b	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Platypus	MODERN SPECIES	9	ACOT11 (ENSOANG00000004014)	PARS2 (ENSOANG00000049281)	TTC22 (ENSOANG00000050959)	DHCR24 (ENSOANG00000000760)	PCSK9 (ENSOANG00000050090)	USP24 (ENSOANG00000048374)	PLPP3 (ENSOANG00000037461)	ENSOANG00000036347	ENSOANG00000009676	C8B (ENSOANG00000041109)	DAB1 (ENSOANG00000046814)	ENSOANG00000043776	ENSOANG00000037593	HOOK1 (ENSOANG00000009802)	ENSOANG00000009801	NFIA (ENSOANG00000046375) ##22	TM2D1 (ENSOANG00000049423)	PATJ (ENSOANG00000044043)	ENSOANG00000011380	USP1 (ENSOANG00000046900)	ANGPTL3 (ENSOANG00000021792)	DOCK7 (ENSOANG00000009181)	ATG4C (ENSOANG00000008336)	ALG6 (ENSOANG00000008335)	EFCAB7 (ENSOANG00000008334)	PGM1 (ENSOANG00000045614)	ROR1 (ENSOANG00000008332)	ENSOANG00000021175	CACHD1 (ENSOANG00000008330)	RAVER2 (ENSOANG00000008327)	JAK1 (ENSOANG00000042832)
Theria	ANCESTRAL SPECIES	3	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00950000182879.b	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00950000182879.b	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Opossum	MODERN SPECIES	1	MYSM1 (ENSMODG00000003341)	JUN (ENSMODG00000003321)	ENSMODG00000043023	ENSMODG00000046294	ENSMODG00000037029	ENSMODG00000036482	HOOK1 (ENSMODG00000003308)	ENSMODG00000002806	ENSMODG00000025701	ENSMODG00000003027	ENSMODG00000051022	ENSMODG00000002507	ENSMODG00000025653	ENSMODG00000003225	ENSMODG00000002495	NFIA (ENSMODG00000002475) ##22	TM2D1 (ENSMODG00000002469)	ENSMODG00000002439	ENSMODG00000040860	ENSMODG00000001539	ENSMODG00000036985	USP1 (ENSMODG00000001514)	ANGPTL3 (ENSMODG00000001506)	ATG4C (ENSMODG00000001393)	ENSMODG00000040872	ENSMODG00000043704	EFCAB7 (ENSMODG00000001374)	ROR1 (ENSMODG00000001352)	ENSMODG00000047547	CACHD1 (ENSMODG00000001285)	ENSMODG00000001242
Marsupialia_b	ANCESTRAL SPECIES	27	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00950000182879.b	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B.b	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Diprotodontia	ANCESTRAL SPECIES	39	ENSGT00390000008549	ENSGT00490000043472	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00940000160126	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00950000182879.b.c	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B.b	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00940000160126	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00950000182879.b.c.a.a	ENSGT00950000182879.b.c.a.b	ENSGT00950000182879.b.d.b	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B.b	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Common wonbat	MODERN SPECIES	612	PRKAA2 (ENSVURG00010007682)	C8A (ENSVURG00010007704)	DAB1 (ENSVURG00010007713)	OMA1 (ENSVURG00010007746)	TACSTD2 (ENSVURG00010007751) ##36	MYSM1 (ENSVURG00010007771)	JUN (ENSVURG00010007825)	FGGY (ENSVURG00010007865)	HOOK1 (ENSVURG00010007915)	ENSVURG00010007958	ENSVURG00010008025	ENSVURG00010008037	C1orf87 (ENSVURG00010008051)	ENSVURG00010008072	ENSVURG00010008077	NFIA (ENSVURG00010008122) ##22	TM2D1 (ENSVURG00010008155)	PATJ (ENSVURG00010008173)	KANK4 (ENSVURG00010008241)	USP1 (ENSVURG00010008279)	DOCK7 (ENSVURG00010008347)	ANGPTL3 (ENSVURG00010009124)	ATG4C (ENSVURG00010009137)	FOXD3 (ENSVURG00010009156)	ALG6 (ENSVURG00010009169)	ENSVURG00010009182	EFCAB7 (ENSVURG00010009191)	PGM1 (ENSVURG00010009200)	ROR1 (ENSVURG00010009211)	ENSVURG00010009222	ENSVURG00010009231
koala	MODERN SPECIES	49		DAB1 (ENSPCIG00000035670)	OMA1 (ENSPCIG00000005353)	TACSTD2 (ENSPCIG00000005361) ##36	MYSM1 (ENSPCIG00000005368)	JUN (ENSPCIG00000005395)	FGGY (ENSPCIG00000027346)	HOOK1 (ENSPCIG00000027352)	ENSPCIG00000005704	ENSPCIG00000004929	ENSPCIG00000005678	ENSPCIG00000004950	ENSPCIG00000036750	ENSPCIG00000006257	ENSPCIG00000031609	NFIA (ENSPCIG00000005498) ##22	TM2D1 (ENSPCIG00000020042)	PATJ (ENSPCIG00000020040)	ENSPCIG00000031531	USP1 (ENSPCIG00000020037)	ANGPTL3 (ENSPCIG00000020036)	DOCK7 (ENSPCIG00000019504)	ATG4C (ENSPCIG00000019434)	ENSPCIG00000007193	ENSPCIG00000007247	EFCAB7 (ENSPCIG00000007250)	PGM1 (ENSPCIG00000007255)	ROR1 (ENSPCIG00000020351)	ENSPCIG00000020349	ENSPCIG00000036138	CACHD1 (ENSPCIG00000020340)
Wallaby	MODERN SPECIES	6641																NFIA (ENSMEUG00000015063) ##22
Tasmanian devil	MODERN SPECIES	3	PRKAA2 (ENSSHAG00000008759)	ENSSHAG00000027390	C8A (ENSSHAG00000006312)	DAB1 (ENSSHAG00000025235)	OMA1 (ENSSHAG00000013846)	TACSTD2 (ENSSHAG00000022593) ##36	MYSM1 (ENSSHAG00000013607)	ENSSHAG00000031806	JUN (ENSSHAG00000030786)	FGGY (ENSSHAG00000005180)	HOOK1 (ENSSHAG00000002611)	ENSSHAG00000012756	ENSSHAG00000000445	ENSSHAG00000012280	ENSSHAG00000011565	NFIA (ENSSHAG00000027297) ##22	PATJ (ENSSHAG00000018648)	KANK4 (ENSSHAG00000020475)	USP1 (ENSSHAG00000018473)	ANGPTL3 (ENSSHAG00000024292)	DOCK7 (ENSSHAG00000018327)	ATG4C (ENSSHAG00000018179)	ENSSHAG00000032110	ENSSHAG00000022262	ALG6 (ENSSHAG00000023626)	ENSSHAG00000017386	EFCAB7 (ENSSHAG00000017313)	PGM1 (ENSSHAG00000017168)	ROR1 (ENSSHAG00000028402)	ENSSHAG00000024628	ENSSHAG00000032234
Eutheria	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00990000211939	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818.t	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00990000211939	ENSGT00940000159251	ENSGT00940000155417.u.a	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Suina	ANCESTRAL SPECIES	27	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.u.b.a	ENSGT00940000155417.v.a.b	ENSGT00940000155417.v.a.a.b	ENSGT00940000155417.v.b	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Chacoan peccary	MODERN SPECIES	54	OMA1 (ENSCWAG00000014961)	TACSTD2 (ENSCWAG00000014948) ##36	MYSM1 (ENSCWAG00000014833)	JUN (ENSCWAG00000014818)	ENSCWAG00000014785	FGGY (ENSCWAG00000014503)	HOOK1 (ENSCWAG00000014277)	ENSCWAG00000014136	ENSCWAG00000013842	ENSCWAG00000013782	ENSCWAG00000013744	ENSCWAG00000013698	C1orf87 (ENSCWAG00000013603)	ENSCWAG00000013573	ENSCWAG00000013519	NFIA (ENSCWAG00000013155) ##22	TM2D1 (ENSCWAG00000013044)	PATJ (ENSCWAG00000012251)	ENSCWAG00000012174	KANK4 (ENSCWAG00000011865)	USP1 (ENSCWAG00000011770)	ANGPTL3 (ENSCWAG00000011690)	DOCK7 (ENSCWAG00000011480)	ENSCWAG00000011429	ATG4C (ENSCWAG00000011374)	FOXD3 (ENSCWAG00000011349)	ALG6 (ENSCWAG00000011295)	EFCAB7 (ENSCWAG00000011246)	PGM1 (ENSCWAG00000011042)	ROR1 (ENSCWAG00000010877)	ENSCWAG00000010798
Pig	MODERN SPECIES	14	MYSM1 (ENSSSCG00000003830)	JUN (ENSSSCG00000031912)	ENSSSCG00000049868	FGGY (ENSSSCG00000003828)	ENSSSCG00000061676	ENSSSCG00000058502	CYP2J34 (ENSSSCG00000056323)	ENSSSCG00000003825	ENSSSCG00000055127	ENSSSCG00000061116	C1orf87 (ENSSSCG00000003823)	ENSSSCG00000033042	ENSSSCG00000057014	ENSSSCG00000044064	ENSSSCG00000059647	NFIA (ENSSSCG00000023243) ##22	TM2D1 (ENSSSCG00000038861)	PATJ (ENSSSCG00000039793)	ENSSSCG00000031640	KANK4 (ENSSSCG00000003821)	USP1 (ENSSSCG00000003820)	ANGPTL3 (ENSSSCG00000003819)	DOCK7 (ENSSSCG00000003818)	ATG4C (ENSSSCG00000003816)	FOXD3 (ENSSSCG00000032215)	ALG6 (ENSSSCG00000003815)	ENSSSCG00000042211	EFCAB7 (ENSSSCG00000003812)	ROR1 (ENSSSCG00000003811)	CACHD1 (ENSSSCG00000004829)	RAVER2 (ENSSSCG00000025672)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00990000211939	ENSGT00940000159251	ENSGT00940000155417.u.a	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Camelidae	ANCESTRAL SPECIES	11	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.v.c.b	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Arabian camel	MODERN SPECIES	4	PLPP3 (ENSCDRG00005013344)	PRKAA2 (ENSCDRG00005013407)	FYB2 (ENSCDRG00005013453)	C8A (ENSCDRG00005013653)	C8B (ENSCDRG00005013692)	DAB1 (ENSCDRG00005013804)	OMA1 (ENSCDRG00005014146)	TACSTD2 (ENSCDRG00005014236) ##36	MYSM1 (ENSCDRG00005014258)	JUN (ENSCDRG00005014307)	FGGY (ENSCDRG00005014344)	HOOK1 (ENSCDRG00005014570)	ENSCDRG00005014670	ENSCDRG00005015188	C1orf87 (ENSCDRG00005015266)	NFIA (ENSCDRG00005015494) ##22	TM2D1 (ENSCDRG00005015765)	PATJ (ENSCDRG00005015902)	KANK4 (ENSCDRG00005016599)	USP1 (ENSCDRG00005016803)	DOCK7 (ENSCDRG00005016867)	ANGPTL3 (ENSCDRG00005017333)	ATG4C (ENSCDRG00005003431)	FOXD3 (ENSCDRG00005003471)	ALG6 (ENSCDRG00005003516)	ITGB3BP (ENSCDRG00005003577)	EFCAB7 (ENSCDRG00005003668)	PGM1 (ENSCDRG00005003722)	ROR1 (ENSCDRG00005003848)	UBE2U (ENSCDRG00005003953)	CACHD1 (ENSCDRG00005004143)
Alpaca	MODERN SPECIES	1469																NFIA (ENSVPAG00000004054) ##22	TM2D1 (ENSVPAG00000004056)	PATJ (ENSVPAG00000004057)	KANK4 (ENSVPAG00000004063)
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00990000211939	ENSGT00940000159251	ENSGT00940000155417.u.a	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Cetacea	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.v	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00940000158468	ENSGT00910000144243.c.a.a	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a.e	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00940000154277.a.b.b.m.b	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.v	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00940000158468	ENSGT00910000144243.c.a.a	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a.e	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00940000154277.a.b.b.m.b	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d.c ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.v	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00940000158468	ENSGT00910000144243.c.a.a	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a.e	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00940000154277.a.b.b.m.b	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Dolphin	MODERN SPECIES	1383																NFIA (ENSTTRG00000011222) ##22
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d.c ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.v	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00390000015470.m.a	ENSGT00940000164101.b	ENSGT00940000158468	ENSGT00910000144243.c.a.a	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a.e	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00940000154277.a.b.b.m.b	ENSGT00390000015466	ENSGT00940000155542.b
Vaquita	MODERN SPECIES		PLPP3 (ENSPSNG00000001521)	PRKAA2 (ENSPSNG00000001539)	ENSPSNG00000001562	C8A (ENSPSNG00000001587)	C8B (ENSPSNG00000001632)	DAB1 (ENSPSNG00000001693)	ENSPSNG00000001727	OMA1 (ENSPSNG00000001743)	TACSTD2 (ENSPSNG00000001769) ##36	MYSM1 (ENSPSNG00000001783)	JUN (ENSPSNG00000001806)	FGGY (ENSPSNG00000001878)	HOOK1 (ENSPSNG00000001959)	CYP2J2 (ENSPSNG00000002001)	ENSPSNG00000002024	NFIA (ENSPSNG00000002205) ##22	ENSPSNG00000002380	TM2D1 (ENSPSNG00000002408)	PATJ (ENSPSNG00000002448)	ENSPSNG00000002480	ENSPSNG00000002492	KANK4 (ENSPSNG00000002529)	USP1 (ENSPSNG00000002605)	DOCK7 (ENSPSNG00000002635)	ANGPTL3 (ENSPSNG00000002721)	ATG4C (ENSPSNG00000002761)	FOXD3 (ENSPSNG00000002801)	ALG6 (ENSPSNG00000002827)	ITGB3BP (ENSPSNG00000002857)	ENSPSNG00000002872	ENSPSNG00000002888
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d.c ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.v	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00390000015470.m.a	ENSGT00940000164101.b	ENSGT00940000158468	ENSGT00910000144243.c.a.a	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a.e	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00940000154277.a.b.b.m.b	ENSGT00390000015466	ENSGT00940000155542.b
Narwhal	MODERN SPECIES	304	PRKAA2 (ENSMMNG00015022111)	FYB2 (ENSMMNG00015022110)	C8A (ENSMMNG00015022109)	C8B (ENSMMNG00015022108)	ENSMMNG00015022107	DAB1 (ENSMMNG00015022106)	ENSMMNG00015022105	OMA1 (ENSMMNG00015022104)	ENSMMNG00015022103 ##36	MYSM1 (ENSMMNG00015022102)	JUN (ENSMMNG00015022101)	FGGY (ENSMMNG00015022099)	HOOK1 (ENSMMNG00015022098)	CYP2J2 (ENSMMNG00015022097)	ENSMMNG00015022096	NFIA (ENSMMNG00015022095) ##22	TM2D1 (ENSMMNG00015022092)	PATJ (ENSMMNG00015022091)	ENSMMNG00015022090	KANK4 (ENSMMNG00015022089)	ENSMMNG00015022087	ANGPTL3 (ENSMMNG00015022086)	DOCK7 (ENSMMNG00015022084)	ATG4C (ENSMMNG00015022082)	FOXD3 (ENSMMNG00015022081)	ALG6 (ENSMMNG00015022080)	ENSMMNG00015022076	ITGB3BP (ENSMMNG00015022074)	EFCAB7 (ENSMMNG00015022073)	PGM1 (ENSMMNG00015022072)	ROR1 (ENSMMNG00015022071)
Beluga whale	MODERN SPECIES	74	ENSDLEG00000019485	PLPP3 (ENSDLEG00000019493)	PRKAA2 (ENSDLEG00000019508)	ENSDLEG00000019521	C8A (ENSDLEG00000019534)	C8B (ENSDLEG00000019542)	DAB1 (ENSDLEG00000019550)	ENSDLEG00000019563	OMA1 (ENSDLEG00000019566)	TACSTD2 (ENSDLEG00000019574) ##36	MYSM1 (ENSDLEG00000019577)	JUN (ENSDLEG00000019588)	FGGY (ENSDLEG00000019599)	HOOK1 (ENSDLEG00000019616)	CYP2J2 (ENSDLEG00000019634)	NFIA (ENSDLEG00000019647) ##22	TM2D1 (ENSDLEG00000019664)	PATJ (ENSDLEG00000019785)	ENSDLEG00000020682	ENSDLEG00000020688	KANK4 (ENSDLEG00000020692)	USP1 (ENSDLEG00000020714)	DOCK7 (ENSDLEG00000010129)	ANGPTL3 (ENSDLEG00000021249)	ATG4C (ENSDLEG00000021255)	FOXD3 (ENSDLEG00000021257)	ALG6 (ENSDLEG00000021260)	ITGB3BP (ENSDLEG00000021262)	ENSDLEG00000021263	EFCAB7 (ENSDLEG00000021268)	PGM1 (ENSDLEG00000021272)
Sperm whale	MODERN SPECIES	15	PCSK9 (ENSPCTG00005022784)	PRKAA2 (ENSPCTG00005022783)	ENSPCTG00005022782	C8A (ENSPCTG00005022781)	C8B (ENSPCTG00005022780)	DAB1 (ENSPCTG00005022778)	ENSPCTG00005022777	OMA1 (ENSPCTG00005022776)	TACSTD2 (ENSPCTG00005022775) ##36	ENSPCTG00005022774	MYSM1 (ENSPCTG00005022773)	HOOK1 (ENSPCTG00005022771)	FGGY (ENSPCTG00005022765)	CYP2J2 (ENSPCTG00005022760)	ENSPCTG00005022759	NFIA (ENSPCTG00005022749) ##22	TM2D1 (ENSPCTG00005022746)	ENSPCTG00005022745	PATJ (ENSPCTG00005022726)	ENSPCTG00005022724	KANK4 (ENSPCTG00005022722)	USP1 (ENSPCTG00005022719)	ANGPTL3 (ENSPCTG00005022717)	DOCK7 (ENSPCTG00005022710)	ENSPCTG00005022703	FOXD3 (ENSPCTG00005022700)	ALG6 (ENSPCTG00005022695)	ENSPCTG00005022690	ENSPCTG00005022689	ITGB3BP (ENSPCTG00005022687)	EFCAB7 (ENSPCTG00005022682)
Blue whale	MODERN SPECIES		PLPP3 (ENSBMSG00010000608)	PRKAA2 (ENSBMSG00010000639)	ENSBMSG00010000658	C8A (ENSBMSG00010000677)	C8B (ENSBMSG00010000715)	DAB1 (ENSBMSG00010000791)	ENSBMSG00010001090	OMA1 (ENSBMSG00010001120)	TACSTD2 (ENSBMSG00010001148) ##36	MYSM1 (ENSBMSG00010001159)	JUN (ENSBMSG00010001187)	FGGY (ENSBMSG00010001218)	HOOK1 (ENSBMSG00010001303)	CYP2J2 (ENSBMSG00010001319)	ENSBMSG00010001338	NFIA (ENSBMSG00010001455) ##22	TM2D1 (ENSBMSG00010001753)	PATJ (ENSBMSG00010001826)	ENSBMSG00010002038	KANK4 (ENSBMSG00010002062)	ENSBMSG00010002165	ENSBMSG00010002182	DOCK7 (ENSBMSG00010002212)	ANGPTL3 (ENSBMSG00010002379)	ENSBMSG00010002413	ENSBMSG00010002428	FOXD3 (ENSBMSG00010002458)	ALG6 (ENSBMSG00010002470)	ITGB3BP (ENSBMSG00010002488)	ENSBMSG00010002519	EFCAB7 (ENSBMSG00010002542)
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00990000211939	ENSGT00940000159251	ENSGT00940000155417.u.a.b	ENSGT00940000155417.u.a.a.a	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336.c.a	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Yarkand deer	MODERN SPECIES	12	PRKAA2 (ENSCHYG00000017206)	FYB2 (ENSCHYG00000017082)	C8A (ENSCHYG00000017037)	C8B (ENSCHYG00000016927)	DAB1 (ENSCHYG00000016340)	ENSCHYG00000016291	OMA1 (ENSCHYG00000016058)	TACSTD2 (ENSCHYG00000015924) ##36	MYSM1 (ENSCHYG00000015752)	JUN (ENSCHYG00000015724)	FGGY (ENSCHYG00000014481)	HOOK1 (ENSCHYG00000014199)	ENSCHYG00000013601	C1orf87 (ENSCHYG00000013337)	ENSCHYG00000013294	NFIA (ENSCHYG00000013049) ##22	TM2D1 (ENSCHYG00000012921)	PATJ (ENSCHYG00000011502)	ENSCHYG00000011365	ENSCHYG00000011355	ENSCHYG00000011320	ENSCHYG00000011307	KANK4 (ENSCHYG00000011035)	USP1 (ENSCHYG00000010926)	ANGPTL3 (ENSCHYG00000010829)	DOCK7 (ENSCHYG00000010521)	ATG4C (ENSCHYG00000010279)	FOXD3 (ENSCHYG00000010241)	ALG6 (ENSCHYG00000010031)	ITGB3BP (ENSCHYG00000009805)	EFCAB7 (ENSCHYG00000009641)
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00990000211939	ENSGT00940000159251	ENSGT00940000155417.u.a.b.a.a.a	ENSGT00940000155417.u.a.b.a.a.b	ENSGT00940000155417.u.a.b.a.b	ENSGT00940000155417.u.a.a.a	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336.c.a	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00990000211939	ENSGT00940000159251	ENSGT00940000155417.u.a.b.a.a.a	ENSGT00940000155417.u.a.b.a.a.b	ENSGT00940000155417.u.a.a.b	ENSGT00940000155417.u.a.a.a	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336.c.a	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Bovinae	ANCESTRAL SPECIES	1	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.u.a.b.a.a.a.a	ENSGT00940000155417.u.a.b.a.a.b	ENSGT00940000155417.u.a.a.b	ENSGT00940000155417.u.a.a.a	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00740000117158	ENSGT00940000162456.p	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336.c.a	ENSGT00390000015466	ENSGT00940000155542.b
Bos	ANCESTRAL SPECIES		ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.u.a.b.a.a.a.b	ENSGT00940000155417.u.a.b.a.a.b	ENSGT00940000155417.u.a.a.b	ENSGT00940000155417.u.a.a.a	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00740000117158	ENSGT00940000162456.p	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336.c.a	ENSGT00390000015466	ENSGT00940000155542.b
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000156450	ENSGT00940000156945	ENSGT01010000222787	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.u.a.b.a.a.a.b	ENSGT00940000155417.u.a.a.a	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00740000117158	ENSGT00940000162456.p	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000153733.B	ENSGT00390000004336.c.a	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Wild yak	MODERN SPECIES	392													ENSBMUG00000000601	ENSBMUG00000000623	C1orf87 (ENSBMUG00000000659)	NFIA (ENSBMUG00000000809) ##22	ENSBMUG00000000847	ENSBMUG00000000848	TM2D1 (ENSBMUG00000000863)	PATJ (ENSBMUG00000001186)	ENSBMUG00000001377	ENSBMUG00000001387	ENSBMUG00000001402	KANK4 (ENSBMUG00000001446)
Domestic yak	MODERN SPECIES	22	ENSBGRG00000000568	C8A (ENSBGRG00000000553)	C8B (ENSBGRG00000000424)	DAB1 (ENSBGRG00000000294)	OMA1 (ENSBGRG00000000253)	ENSBGRG00000000232	TACSTD2 (ENSBGRG00000024919) ##36	MYSM1 (ENSBGRG00000024641)	JUN (ENSBGRG00000024565)	ENSBGRG00000024541	FGGY (ENSBGRG00000024465)	HOOK1 (ENSBGRG00000024297)	ENSBGRG00000024031	ENSBGRG00000023881	C1orf87 (ENSBGRG00000023807)	NFIA (ENSBGRG00000023142) ##22	ENSBGRG00000023087	TM2D1 (ENSBGRG00000022969)	ENSBGRG00000022922	ENSBGRG00000022909	PATJ (ENSBGRG00000022311)	ENSBGRG00000022263	ENSBGRG00000022229	ENSBGRG00000022209	ENSBGRG00000022077	USP1 (ENSBGRG00000021990)	ANGPTL3 (ENSBGRG00000021909)	DOCK7 (ENSBGRG00000018618)	ATG4C (ENSBGRG00000018342)	ALG6 (ENSBGRG00000018183)	ENSBGRG00000018100
Bos_b	ANCESTRAL SPECIES	1	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.u.a.b.a.a.a.a	ENSGT00940000155417.u.a.b.a.a.b	ENSGT00940000155417.u.a.a.b	ENSGT00940000155417.u.a.a.a	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00740000117158	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336.c.a	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Cow	MODERN SPECIES	22	FYB2 (ENSBTAG00000009314)	C8A (ENSBTAG00000003774)	C8B (ENSBTAG00000003775)	DAB1 (ENSBTAG00000013802)	OMA1 (ENSBTAG00000017326)	TACSTD2 (ENSBTAG00000004381) ##36	MYSM1 (ENSBTAG00000013961)	JUN (ENSBTAG00000004037)	FGGY (ENSBTAG00000030669)	HOOK1 (ENSBTAG00000030671)	CYP2J30 (ENSBTAG00000051030)	ENSBTAG00000053766	ENSBTAG00000051904	ENSBTAG00000051542	C3H1orf87 (ENSBTAG00000009481)	NFIA (ENSBTAG00000000074) ##22	ENSBTAG00000009769	TM2D1 (ENSBTAG00000017161)	ENSBTAG00000046720	PATJ (ENSBTAG00000021975)	ENSBTAG00000047830	KANK4 (ENSBTAG00000014382)	USP1 (ENSBTAG00000020451)	ANGPTL3 (ENSBTAG00000021386)	DOCK7 (ENSBTAG00000019877)	ATG4C (ENSBTAG00000010124)	FOXD3 (ENSBTAG00000008501)	ALG6 (ENSBTAG00000030706)	ITGB3BP (ENSBTAG00000030710)	EFCAB7 (ENSBTAG00000002600)	PGM1 (ENSBTAG00000019011)
Hybrid Bos Indicus	MODERN SPECIES	22	C8A (ENSBIXG00005018608)	C8B (ENSBIXG00005003029)	DAB1 (ENSBIXG00005018812)	OMA1 (ENSBIXG00005000059)	TACSTD2 (ENSBIXG00005018922) ##36	MYSM1 (ENSBIXG00005019087)	JUN (ENSBIXG00005019120)	ENSBIXG00005019148	ENSBIXG00005019169	FGGY (ENSBIXG00005019237)	HOOK1 (ENSBIXG00005003139)	ENSBIXG00005019340	ENSBIXG00005019472	C1orf87 (ENSBIXG00005019556)	ENSBIXG00005019575	NFIA (ENSBIXG00005020048) ##22	ENSBIXG00005020134	TM2D1 (ENSBIXG00005020166)	ENSBIXG00005020179	PATJ (ENSBIXG00005003424)	ENSBIXG00005020451	ENSBIXG00005020474	KANK4 (ENSBIXG00005020554)	USP1 (ENSBIXG00005020600)	ANGPTL3 (ENSBIXG00005020614)	DOCK7 (ENSBIXG00005020995)	ATG4C (ENSBIXG00005003580)	ENSBIXG00005021222	ALG6 (ENSBIXG00005021259)	ENSBIXG00005021312	EFCAB7 (ENSBIXG00005003600)
American bison	MODERN SPECIES	2943																NFIA (ENSBBBG00000020188) ##22	ENSBBBG00000005451	TM2D1 (ENSBBBG00000020219)	PATJ (ENSBBBG00000020417)	ENSBBBG00000000683	ENSBBBG00000000675	ENSBBBG00000000661	KANK4 (ENSBBBG00000000615)	USP1 (ENSBBBG00000000583)	ANGPTL3 (ENSBBBG00000000578)	DOCK7 (ENSBBBG00000020989)	ATG4C (ENSBBBG00000021066)	ALG6 (ENSBBBG00000021124)	ENSBBBG00000021141	EFCAB7 (ENSBBBG00000021157)	PGM1 (ENSBBBG00000021191)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00950000182802.B.a.b	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00990000211939	ENSGT00940000159251	ENSGT00940000155417.u.a.b.a.a.a	ENSGT00940000155417.u.a.b.a.a.b	ENSGT00940000155417.u.a.a.b	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000164101.b	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336.c.a	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Rambouillet Sheep	MODERN SPECIES		C8A (ENSOARG00020021418)	C8B (ENSOARG00020022425)	DAB1 (ENSOARG00020022515)	ENSOARG00020022675	OMA1 (ENSOARG00020022701)	TACSTD2 (ENSOARG00020022774) ##36	MYSM1 (ENSOARG00020022826)	JUN (ENSOARG00020023038)	ENSOARG00020023058	FGGY (ENSOARG00020023091)	ENSOARG00020023217	HOOK1 (ENSOARG00020023235)	CYP2J (ENSOARG00020023337)	ENSOARG00020023639	ENSOARG00020023663	NFIA (ENSOARG00020023719) ##22	TM2D1 (ENSOARG00020024049)	PATJ (ENSOARG00020024177)	ENSOARG00020025242	ENSOARG00020025248	ENSOARG00020025257	KANK4 (ENSOARG00020025276)	USP1 (ENSOARG00020025306)	DOCK7 (ENSOARG00020025422)	ANGPTL3 (ENSOARG00020025829)	ATG4C (ENSOARG00020025832)	FOXD3 (ENSOARG00020025839)	ALG6 (ENSOARG00020025843)	ITGB3BP (ENSOARG00020025849)	ROR1 (ENSOARG00020025892)	UBE2U (ENSOARG00020025900)
Goat	MODERN SPECIES	22	C8A (ENSCHIG00000025838)	C8B (ENSCHIG00000012131)	DAB1 (ENSCHIG00000024663)	ENSCHIG00000025606	OMA1 (ENSCHIG00000015440)	TACSTD2 (ENSCHIG00000012887) ##36	MYSM1 (ENSCHIG00000007198)	JUN (ENSCHIG00000004093)	FGGY (ENSCHIG00000022252)	ENSCHIG00000018971	HOOK1 (ENSCHIG00000025016)	CYP2J30 (ENSCHIG00000022554)	CYP2J29 (ENSCHIG00000009032)	CYP2J26 (ENSCHIG00000021521)	C1orf87 (ENSCHIG00000023812)	NFIA (ENSCHIG00000011380) ##22	ENSCHIG00000012418	TM2D1 (ENSCHIG00000026504)	PATJ (ENSCHIG00000023685)	ENSCHIG00000012571	KANK4 (ENSCHIG00000026610)	USP1 (ENSCHIG00000015997)	DOCK7 (ENSCHIG00000022741)	ANGPTL3 (ENSCHIG00000018304)	ENSCHIG00000013344	ENSCHIG00000022527	ATG4C (ENSCHIG00000024580)	ALG6 (ENSCHIG00000019050)	ITGB3BP (ENSCHIG00000015244)	EFCAB7 (ENSCHIG00000020023)	PGM1 (ENSCHIG00000018654)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	339																ENSMMSG00000010635 ##22	TM2D1 (ENSMMSG00000010559)	ENSMMSG00000010512	PATJ (ENSMMSG00000010039)	ENSMMSG00000009951	ENSMMSG00000009926	KANK4 (ENSMMSG00000009822)	ENSMMSG00000009774	ANGPTL3 (ENSMMSG00000009744)	DOCK7 (ENSMMSG00000009564)	ATG4C (ENSMMSG00000009422)	FOXD3 (ENSMMSG00000009398)	ALG6 (ENSMMSG00000009336)	ITGB3BP (ENSMMSG00000009277)	EFCAB7 (ENSMMSG00000009202)	PGM1 (ENSMMSG00000009049)
Siberian musk deer	MODERN SPECIES	340	FYB2 (ENSMMSG00000012180)	C8A (ENSMMSG00000012125)	C8B (ENSMMSG00000012027)	DAB1 (ENSMMSG00000011584)	OMA1 (ENSMMSG00000011517)	TACSTD2 (ENSMMSG00000011491) ##36	MYSM1 (ENSMMSG00000011354)	JUN (ENSMMSG00000011331)	FGGY (ENSMMSG00000010989)	HOOK1 (ENSMMSG00000010928)	ENSMMSG00000010884	ENSMMSG00000010832	ENSMMSG00000010820	ENSMMSG00000010783	ENSMMSG00000010729	ENSMMSG00000010678 ##22
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00990000211939	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818.t	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00990000211939	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818.t	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818.t.f	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818.t.f	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818.t.f	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B
leopard	MODERN SPECIES	16	USP24 (ENSPPRG00000004880)	PLPP3 (ENSPPRG00000005923)	PRKAA2 (ENSPPRG00000007154)	FYB2 (ENSPPRG00000008014)	C8A (ENSPPRG00000008811)	C8B (ENSPPRG00000010562)	DAB1 (ENSPPRG00000014808)	OMA1 (ENSPPRG00000016455)	TACSTD2 (ENSPPRG00000020682) ##36	MYSM1 (ENSPPRG00000019169)	JUN (ENSPPRG00000020728)	FGGY (ENSPPRG00000022697)	HOOK1 (ENSPPRG00000000392)	CYP2J2 (ENSPPRG00000000574)	C1orf87 (ENSPPRG00000001614)	NFIA (ENSPPRG00000004851) ##22	TM2D1 (ENSPPRG00000005809)	ENSPPRG00000009261	ENSPPRG00000011020	L1TD1 (ENSPPRG00000011113)	KANK4 (ENSPPRG00000013316)	USP1 (ENSPPRG00000013661)	ANGPTL3 (ENSPPRG00000013921)	DOCK7 (ENSPPRG00000007918)	ATG4C (ENSPPRG00000009565)	FOXD3 (ENSPPRG00000014919)	ALG6 (ENSPPRG00000011811)	ITGB3BP (ENSPPRG00000012409)	EFCAB7 (ENSPPRG00000012738)	PGM1 (ENSPPRG00000013727)	ENSPPRG00000013850
lion	MODERN SPECIES	8	ENSPLOG00000013517	PLPP3 (ENSPLOG00000013480)	PRKAA2 (ENSPLOG00000013440)	FYB2 (ENSPLOG00000013295)	C8A (ENSPLOG00000013160)	C8B (ENSPLOG00000012907)	DAB1 (ENSPLOG00000012445)	OMA1 (ENSPLOG00000012324)	TACSTD2 (ENSPLOG00000012302) ##36	MYSM1 (ENSPLOG00000012253)	JUN (ENSPLOG00000012226)	FGGY (ENSPLOG00000012145)	HOOK1 (ENSPLOG00000011920)	CYP2J2 (ENSPLOG00000011809)	C1orf87 (ENSPLOG00000011637)	NFIA (ENSPLOG00000011140) ##22	TM2D1 (ENSPLOG00000010892)	PATJ (ENSPLOG00000010662)	L1TD1 (ENSPLOG00000010511)	ENSPLOG00000010404	USP1 (ENSPLOG00000010281)	ANGPTL3 (ENSPLOG00000010232)	DOCK7 (ENSPLOG00000008689)	ATG4C (ENSPLOG00000008193)	FOXD3 (ENSPLOG00000008178)	ALG6 (ENSPLOG00000008139)	ITGB3BP (ENSPLOG00000008062)	EFCAB7 (ENSPLOG00000007985)	PGM1 (ENSPLOG00000007875)	ROR1 (ENSPLOG00000007754)	ENSPLOG00000007699
Tiger	MODERN SPECIES	311	TMEM61 (ENSPTIG00000020274)	BSND (ENSPTIG00000019342)	USP24 (ENSPTIG00000012990)	PLPP3 (ENSPTIG00000011255)	PRKAA2 (ENSPTIG00000009740)	FYB2 (ENSPTIG00000008235)	C8A (ENSPTIG00000007431)	C8B (ENSPTIG00000021329)	DAB1 (ENSPTIG00000015668)	OMA1 (ENSPTIG00000014427)	MYSM1 (ENSPTIG00000013445)	FGGY (ENSPTIG00000010783)	HOOK1 (ENSPTIG00000008464)	CYP2J2 (ENSPTIG00000007533)	C1orf87 (ENSPTIG00000004810)	NFIA (ENSPTIG00000022054) ##22	TM2D1 (ENSPTIG00000021958)	ENSPTIG00000019558	ENSPTIG00000016463	KANK4 (ENSPTIG00000007617)	USP1 (ENSPTIG00000006642)	ANGPTL3 (ENSPTIG00000004150)	DOCK7 (ENSPTIG00000011989)	ATG4C (ENSPTIG00000010987)	ALG6 (ENSPTIG00000002736)	ITGB3BP (ENSPTIG00000000768)	EFCAB7 (ENSPTIG00000020117)	PGM1 (ENSPTIG00000018253)	ROR1 (ENSPTIG00000016351)	UBE2U (ENSPTIG00000014692)	CACHD1 (ENSPTIG00000012920)
Cat	MODERN SPECIES	239	USP24 (ENSFCAG00000008817)	PLPP3 (ENSFCAG00000014266)	PRKAA2 (ENSFCAG00000003080)	FYB2 (ENSFCAG00000008242)	C8A (ENSFCAG00000003897)	C8B (ENSFCAG00000003899)	DAB1 (ENSFCAG00000003901)	OMA1 (ENSFCAG00000001377)	TACSTD2 (ENSFCAG00000002921) ##36	MYSM1 (ENSFCAG00000026572)	JUN (ENSFCAG00000024972)	FGGY (ENSFCAG00000030121)	HOOK1 (ENSFCAG00000018198)	CYP2J2 (ENSFCAG00000011145)	C1orf87 (ENSFCAG00000011149)	NFIA (ENSFCAG00000005997) ##22	TM2D1 (ENSFCAG00000000772)	PATJ (ENSFCAG00000005299)	L1TD1 (ENSFCAG00000042658)	KANK4 (ENSFCAG00000000371)	USP1 (ENSFCAG00000023269)	DOCK7 (ENSFCAG00000022720)	ANGPTL3 (ENSFCAG00000011284)	ATG4C (ENSFCAG00000027083)	ENSFCAG00000052912	ENSFCAG00000043193	FOXD3 (ENSFCAG00000045701)	ENSFCAG00000025108	ALG6 (ENSFCAG00000027407)	ITGB3BP (ENSFCAG00000025609)	EFCAB7 (ENSFCAG00000024580)
Caniformia	ANCESTRAL SPECIES	2	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00990000211939	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818.t	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B
Canidae	ANCESTRAL SPECIES	11	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00990000211939	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01100000266959	ENSGT01050000244818.t.d	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Red fox	MODERN SPECIES	62	USP24 (ENSVVUG00000026664)	PLPP3 (ENSVVUG00000026636)	PRKAA2 (ENSVVUG00000026632)	FYB2 (ENSVVUG00000026625)	C8A (ENSVVUG00000026618)	C8B (ENSVVUG00000026607)	DAB1 (ENSVVUG00000026581)	OMA1 (ENSVVUG00000026558)	TACSTD2 (ENSVVUG00000026557) ##36	MYSM1 (ENSVVUG00000026545)	FGGY (ENSVVUG00000026516)	ENSVVUG00000026512	HOOK1 (ENSVVUG00000026494)	CYP2J2 (ENSVVUG00000026490)	C1orf87 (ENSVVUG00000026487)	NFIA (ENSVVUG00000026485) ##22	TM2D1 (ENSVVUG00000026483)	ENSVVUG00000026417	ENSVVUG00000026408	ENSVVUG00000026322	ENSVVUG00000026313	ENSVVUG00000026311	KANK4 (ENSVVUG00000026306)	USP1 (ENSVVUG00000026295)	ANGPTL3 (ENSVVUG00000026291)	DOCK7 (ENSVVUG00000016969)	ENSVVUG00000016411	PAM16 (ENSVVUG00000016407)	ATG4C (ENSVVUG00000016398)	ENSVVUG00000016380	ALG6 (ENSVVUG00000016343)
Canis_lupus	ANCESTRAL SPECIES	5	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00900000143747	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00990000211939	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000154679.dc	ENSGT00940000157820.a.b	ENSGT01050000244818.t.d	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00530000063666.b.y.a.b.b	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466
Dog	MODERN SPECIES	33	ENSCAFG00845013784	C8A (ENSCAFG00845013747)	C8B (ENSCAFG00845013718)	ENSCAFG00845013699	DAB1 (ENSCAFG00845013616)	OMA1 (ENSCAFG00845006858)	TACSTD2 (ENSCAFG00845006789) ##36	MYSM1 (ENSCAFG00845006608)	JUN (ENSCAFG00845006541)	ENSCAFG00845006512	ENSCAFG00845006485	FGGY (ENSCAFG00845006253)	HOOK1 (ENSCAFG00845006034)	CYP2J2 (ENSCAFG00845005961)	C5H1orf87 (ENSCAFG00845005904)	NFIA (ENSCAFG00845005661) ##22	TM2D1 (ENSCAFG00845005499)	PATJ (ENSCAFG00845005350)	ENSCAFG00845005273	ENSCAFG00845005266	L1TD1 (ENSCAFG00845005257)	KANK4 (ENSCAFG00845005174)	USP1 (ENSCAFG00845005152)	ANGPTL3 (ENSCAFG00845005144)	DOCK7 (ENSCAFG00845005064)	ATG4C (ENSCAFG00845005004)	ENSCAFG00845004990	ENSCAFG00845004987	FOXD3 (ENSCAFG00845004983)	ALG6 (ENSCAFG00845004972)	ITGB3BP (ENSCAFG00845004941)
Dingo	DUPLICATION
Dingo	MODERN SPECIES	373	ENSCAFG00020012462	C8A (ENSCAFG00020012468)	ENSCAFG00020012491	C8B (ENSCAFG00020012507)	DAB1 (ENSCAFG00020012537)	ENSCAFG00020012561	OMA1 (ENSCAFG00020012566)	TACSTD2 (ENSCAFG00020012569) ##36	MYSM1 (ENSCAFG00020012575)	JUN (ENSCAFG00020012687)	FGGY (ENSCAFG00020012729)	ENSCAFG00020012733	HOOK1 (ENSCAFG00020012744)	CYP2J2 (ENSCAFG00020012777)	ENSCAFG00020012779	ENSCAFG00020012789 ##22	ENSCAFG00020012805 ##22	TM2D1 (ENSCAFG00020012812)	ENSCAFG00020012823	ENSCAFG00020012901	ENSCAFG00020012948	ENSCAFG00020012949	L1TD1 (ENSCAFG00020012951)	ENSCAFG00020012955	ENSCAFG00020012959	USP1 (ENSCAFG00020012966)	DOCK7 (ENSCAFG00020013336)	ANGPTL3 (ENSCAFG00020017900)	ATG4C (ENSCAFG00020017922)	ENSCAFG00020017929	ENSCAFG00020017930
Dingo	MODERN SPECIES	373	C8A (ENSCAFG00020012468)	ENSCAFG00020012491	C8B (ENSCAFG00020012507)	DAB1 (ENSCAFG00020012537)	ENSCAFG00020012561	OMA1 (ENSCAFG00020012566)	TACSTD2 (ENSCAFG00020012569) ##36	MYSM1 (ENSCAFG00020012575)	JUN (ENSCAFG00020012687)	FGGY (ENSCAFG00020012729)	ENSCAFG00020012733	HOOK1 (ENSCAFG00020012744)	CYP2J2 (ENSCAFG00020012777)	ENSCAFG00020012779	ENSCAFG00020012789 ##22	ENSCAFG00020012805 ##22	TM2D1 (ENSCAFG00020012812)	ENSCAFG00020012823	ENSCAFG00020012901	ENSCAFG00020012948	ENSCAFG00020012949	L1TD1 (ENSCAFG00020012951)	ENSCAFG00020012955	ENSCAFG00020012959	USP1 (ENSCAFG00020012966)	DOCK7 (ENSCAFG00020013336)	ANGPTL3 (ENSCAFG00020017900)	ATG4C (ENSCAFG00020017922)	ENSCAFG00020017929	ENSCAFG00020017930	FOXD3 (ENSCAFG00020017935)
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818.t	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B
Mustelinae	ANCESTRAL SPECIES	39	ENSGT00390000008549	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818.t	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT01100000264156.a	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256
Ferret	MODERN SPECIES	192	ENSMPUG00000007165	PLPP3 (ENSMPUG00000007173)	PRKAA2 (ENSMPUG00000007247)	FYB2 (ENSMPUG00000007259)	C8A (ENSMPUG00000007275)	C8B (ENSMPUG00000007296)	DAB1 (ENSMPUG00000007313)	OMA1 (ENSMPUG00000007418)	TACSTD2 (ENSMPUG00000020181) ##36	MYSM1 (ENSMPUG00000007462)	JUN (ENSMPUG00000020182)	FGGY (ENSMPUG00000007478)	HOOK1 (ENSMPUG00000007486)	CYP2J2 (ENSMPUG00000007501)	ENSMPUG00000007512	NFIA (ENSMPUG00000007524) ##22	TM2D1 (ENSMPUG00000007538)	PATJ (ENSMPUG00000007545)	KANK4 (ENSMPUG00000007723)	USP1 (ENSMPUG00000007732)	DOCK7 (ENSMPUG00000007740)	ANGPTL3 (ENSMPUG00000007973)	ATG4C (ENSMPUG00000007984)	ENSMPUG00000008058	ALG6 (ENSMPUG00000008069)	ITGB3BP (ENSMPUG00000008084)	EFCAB7 (ENSMPUG00000008091)	PGM1 (ENSMPUG00000008105)
American mink	MODERN SPECIES	57																NFIA (ENSNVIG00000009117) ##22	TM2D1 (ENSNVIG00000009157)	PATJ (ENSNVIG00000009197)	L1TD1 (ENSNVIG00000009541)	KANK4 (ENSNVIG00000009550)	USP1 (ENSNVIG00000009582)	DOCK7 (ENSNVIG00000009659)	ANGPTL3 (ENSNVIG00000010008)	ATG4C (ENSNVIG00000010028)	ENSNVIG00000010049	ALG6 (ENSNVIG00000010061)	ITGB3BP (ENSNVIG00000010096)	EFCAB7 (ENSNVIG00000010114)	PGM1 (ENSNVIG00000010153)	ENSNVIG00000010195	ROR1 (ENSNVIG00000010206)
Ursidae	ANCESTRAL SPECIES		ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818.t.b	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B
Giant Panda	MODERN SPECIES	11	ENSAMEG00000030647	PLPP3 (ENSAMEG00000017242)	PRKAA2 (ENSAMEG00000017253)	ENSAMEG00000004053	C8A (ENSAMEG00000004055)	C8B (ENSAMEG00000007016)	DAB1 (ENSAMEG00000009524)	OMA1 (ENSAMEG00000000254)	TACSTD2 (ENSAMEG00000024392) ##36	MYSM1 (ENSAMEG00000000263)	JUN (ENSAMEG00000029207)	FGGY (ENSAMEG00000000277)	HOOK1 (ENSAMEG00000000285)	CYP2J2 (ENSAMEG00000000342)	ENSAMEG00000000383	NFIA (ENSAMEG00000011711) ##22	TM2D1 (ENSAMEG00000011705)	PATJ (ENSAMEG00000011620)	L1TD1 (ENSAMEG00000014821)	KANK4 (ENSAMEG00000014824)	USP1 (ENSAMEG00000014832)	DOCK7 (ENSAMEG00000014852)	ANGPTL3 (ENSAMEG00000014967)	ATG4C (ENSAMEG00000014990)	ENSAMEG00000015017	FOXD3 (ENSAMEG00000025968)	ALG6 (ENSAMEG00000015024)	ITGB3BP (ENSAMEG00000025500)	EFCAB7 (ENSAMEG00000015027)	PGM1 (ENSAMEG00000015053)	ROR1 (ENSAMEG00000026239)
Ursus	ANCESTRAL SPECIES	18												ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818.t.b	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000015224.c.b.b.a.b.b.a	ENSGT00940000153947.B
American black bear	DUPLICATION
American black bear	MODERN SPECIES	2142																NFIA (ENSUAMG00000016699) ##22
American black bear	MODERN SPECIES	3255																ENSUAMG00000004133 ##22
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	170								ENSUMAG00000015418	OR6C75 (ENSUMAG00000015414)	ENSUMAG00000015402	HOOK1 (ENSUMAG00000015366)	CYP2J2 (ENSUMAG00000015360)	ENSUMAG00000015350	ENSUMAG00000015348	ENSUMAG00000015336 ##22	ENSUMAG00000015327 ##22	TM2D1 (ENSUMAG00000015321)	ENSUMAG00000015022	ENSUMAG00000014936	L1TD1 (ENSUMAG00000014924)	KANK4 (ENSUMAG00000014917)	USP1 (ENSUMAG00000014896)	ANGPTL3 (ENSUMAG00000014860)	DOCK7 (ENSUMAG00000009379)	ATG4C (ENSUMAG00000008849)	ALG6 (ENSUMAG00000008819)	ITGB3BP (ENSUMAG00000008812)	EFCAB7 (ENSUMAG00000008804)	PGM1 (ENSUMAG00000008746)	ENSUMAG00000008731	ROR1 (ENSUMAG00000008696)
Polar bear	MODERN SPECIES	170									ENSUMAG00000015418	OR6C75 (ENSUMAG00000015414)	ENSUMAG00000015402	HOOK1 (ENSUMAG00000015366)	CYP2J2 (ENSUMAG00000015360)	ENSUMAG00000015350	ENSUMAG00000015348	ENSUMAG00000015336 ##22	ENSUMAG00000015327 ##22	TM2D1 (ENSUMAG00000015321)	ENSUMAG00000015022	ENSUMAG00000014936	L1TD1 (ENSUMAG00000014924)	KANK4 (ENSUMAG00000014917)	USP1 (ENSUMAG00000014896)	ANGPTL3 (ENSUMAG00000014860)	DOCK7 (ENSUMAG00000009379)	ATG4C (ENSUMAG00000008849)	ALG6 (ENSUMAG00000008819)	ITGB3BP (ENSUMAG00000008812)	EFCAB7 (ENSUMAG00000008804)	PGM1 (ENSUMAG00000008746)	ENSUMAG00000008731
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818.t	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256
Equus	ANCESTRAL SPECIES	3														ENSGT00390000008678	ENSGT00940000172662	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818.t.h	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256
Donkey	MODERN SPECIES	7														ENSEASG00005008953	ENSEASG00005027546	NFIA (ENSEASG00005008945) ##22	ENSEASG00005008936	PATJ (ENSEASG00005008849)	L1TD1 (ENSEASG00005008811)	KANK4 (ENSEASG00005008809)	USP1 (ENSEASG00005008805)	ENSEASG00005008801	ANGPTL3 (ENSEASG00005008790)	DOCK7 (ENSEASG00005008261)	ATG4C (ENSEASG00005008203)	ENSEASG00005027466	ENSEASG00005034981	ALG6 (ENSEASG00005008197)	ITGB3BP (ENSEASG00005008189)	EFCAB7 (ENSEASG00005008181)	PGM1 (ENSEASG00005008175)
Horse	MODERN SPECIES	26														C5H1orf87 (ENSECAG00000026838)	ENSECAG00000053077	NFIA (ENSECAG00000015574) ##22	TM2D1 (ENSECAG00000015035)	PATJ (ENSECAG00000013266)	L1TD1 (ENSECAG00000013248)	KANK4 (ENSECAG00000012602)	USP1 (ENSECAG00000011151)	ENSECAG00000006699	ANGPTL3 (ENSECAG00000008457)	DOCK7 (ENSECAG00000009061)	ATG4C (ENSECAG00000000823)	ENSECAG00000048116	ALG6 (ENSECAG00000024941)	ITGB3BP (ENSECAG00000024911)	EFCAB7 (ENSECAG00000028115)	PGM1 (ENSECAG00000024262)	ROR1 (ENSECAG00000024107)
Chiroptera	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1000																ENSMLUG00000024011 ##22	ENSMLUG00000008375 ##22	TM2D1 (ENSMLUG00000028750)	PATJ (ENSMLUG00000006861)	KANK4 (ENSMLUG00000006932)	USP1 (ENSMLUG00000012439)	DOCK7 (ENSMLUG00000012444)	ANGPTL3 (ENSMLUG00000015497)	ATG4C (ENSMLUG00000029040)	ENSMLUG00000028331	FOXD3 (ENSMLUG00000006018)	ALG6 (ENSMLUG00000004045)	ITGB3BP (ENSMLUG00000004057)	EFCAB7 (ENSMLUG00000011542)	ENSMLUG00000023512	PGM1 (ENSMLUG00000012744)
Microbat	MODERN SPECIES	1000															ENSMLUG00000024011 ##22	ENSMLUG00000008375 ##22	TM2D1 (ENSMLUG00000028750)	PATJ (ENSMLUG00000006861)	KANK4 (ENSMLUG00000006932)	USP1 (ENSMLUG00000012439)	DOCK7 (ENSMLUG00000012444)	ANGPTL3 (ENSMLUG00000015497)	ATG4C (ENSMLUG00000029040)	ENSMLUG00000028331	FOXD3 (ENSMLUG00000006018)	ALG6 (ENSMLUG00000004045)	ITGB3BP (ENSMLUG00000004057)	EFCAB7 (ENSMLUG00000011542)	ENSMLUG00000023512	PGM1 (ENSMLUG00000012744)	ROR1 (ENSMLUG00000010560)
Greater horseshoe bat	MODERN SPECIES	27	C8B (ENSRFEG00010000995)	DAB1 (ENSRFEG00010001052)	OMA1 (ENSRFEG00010001219)	TACSTD2 (ENSRFEG00010001241) ##36	MYSM1 (ENSRFEG00010001265)	JUN (ENSRFEG00010001347)	ENSRFEG00010001367	FGGY (ENSRFEG00010001410)	HOOK1 (ENSRFEG00010001515)	ENSRFEG00010001627	ENSRFEG00010001785	ENSRFEG00010001873	ENSRFEG00010002128	ENSRFEG00010002144	ENSRFEG00010002162	NFIA (ENSRFEG00010002359) ##22	ENSRFEG00010002611	TM2D1 (ENSRFEG00010002648)	PATJ (ENSRFEG00010002868)	KANK4 (ENSRFEG00010003055)	USP1 (ENSRFEG00010003131)	DOCK7 (ENSRFEG00010003268)	ANGPTL3 (ENSRFEG00010003412)	ATG4C (ENSRFEG00010003453)	FOXD3 (ENSRFEG00010003478)	ENSRFEG00010003488	ALG6 (ENSRFEG00010003519)	ITGB3BP (ENSRFEG00010003573)	EFCAB7 (ENSRFEG00010003607)	PGM1 (ENSRFEG00010003661)	ROR1 (ENSRFEG00010003713)
Megabat	MODERN SPECIES	1739																NFIA (ENSPVAG00000005805) ##22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a ##22
Common shrew	MODERN SPECIES	4229																NFIA (ENSSARG00000004476) ##22
Hedgehog	MODERN SPECIES	5438																NFIA (ENSEEUG00000015082) ##22
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Tree shrew	MODERN SPECIES	3004																NFIA (ENSTBEG00000013441) ##22
Glires	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Rodentia	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Hystricomorpha	ANCESTRAL SPECIES	44																ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256
Hystricomorpha_a	ANCESTRAL SPECIES	14																ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Hystricomorpha_b	ANCESTRAL SPECIES	6																ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Long-tailed chinchilla	MODERN SPECIES	130															ENSCLAG00000005718	NFIA (ENSCLAG00000005937) ##22	TM2D1 (ENSCLAG00000005321)	PATJ (ENSCLAG00000005694)	ENSCLAG00000005428	KANK4 (ENSCLAG00000004374)	USP1 (ENSCLAG00000009389)	ANGPTL3 (ENSCLAG00000011792)	DOCK7 (ENSCLAG00000006534)	ATG4C (ENSCLAG00000005419)	ENSCLAG00000005099	ITGB3BP (ENSCLAG00000004361)	EFCAB7 (ENSCLAG00000009320)	PGM1 (ENSCLAG00000008744)	ROR1 (ENSCLAG00000010126)	CACHD1 (ENSCLAG00000007901)	RAVER2 (ENSCLAG00000006590)
Degu	MODERN SPECIES	98														ENSODEG00000004158	ENSODEG00000004370	NFIA (ENSODEG00000005024) ##22	TM2D1 (ENSODEG00000004635)	PATJ (ENSODEG00000004922)	ENSODEG00000006862	ENSODEG00000007065	DOCK7 (ENSODEG00000004836)	ENSODEG00000005344	ANGPTL3 (ENSODEG00000005471)	ENSODEG00000019085	ATG4C (ENSODEG00000005462)	ENSODEG00000005048	ITGB3BP (ENSODEG00000005479)	ENSODEG00000019103	ENSODEG00000005465	PGM1 (ENSODEG00000005752)	ENSODEG00000005033
Guinea pig	MODERN SPECIES	2	BRINP1 (ENSCPOG00000006572)	CDK5RAP2 (ENSCPOG00000007408)	ENSCPOG00000007428	FBXW2 (ENSCPOG00000035293)	B3GALT9 (ENSCPOG00000021101)	PSMD5 (ENSCPOG00000025689)	ENSCPOG00000033823	PHF19 (ENSCPOG00000002245)	TRAF1 (ENSCPOG00000037365)	C5 (ENSCPOG00000002250)	CNTRL (ENSCPOG00000006668)	RAB14 (ENSCPOG00000036631)	GSN (ENSCPOG00000008387)	STOM (ENSCPOG00000034024)	ENSCPOG00000036581	NFIA (ENSCPOG00000010091) ##22	TM2D1 (ENSCPOG00000012287)	PATJ (ENSCPOG00000024891)	KANK4 (ENSCPOG00000039764)	USP1 (ENSCPOG00000010416)	ANGPTL3 (ENSCPOG00000006192)	ENSCPOG00000027140	DOCK7 (ENSCPOG00000006170)	ATG4C (ENSCPOG00000001607)	ALG6 (ENSCPOG00000005163)	ITGB3BP (ENSCPOG00000034564)	EFCAB7 (ENSCPOG00000015458)	PGM1 (ENSCPOG00000022261)	ROR1 (ENSCPOG00000034531)	ENSCPOG00000010304	CACHD1 (ENSCPOG00000011700)
Naked mole-rat female	MODERN SPECIES	10																NFIA (ENSHGLG00000017859) ##22	TM2D1 (ENSHGLG00000041262)	PATJ (ENSHGLG00000014013)	ENSHGLG00000035291	ENSHGLG00000013193	ANGPTL3 (ENSHGLG00000018269)	DOCK7 (ENSHGLG00000018341)	ATG4C (ENSHGLG00000046412)	ENSHGLG00000042394	FOXD3 (ENSHGLG00000043312)	ALG6 (ENSHGLG00000018273)	ENSHGLG00000017596	EFCAB7 (ENSHGLG00000017587)	PGM1 (ENSHGLG00000017576)	ENSHGLG00000042916	ROR1 (ENSHGLG00000017565)
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256
Marmotini	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00390000009895.i.b.b	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00390000009895.i.b.b	ENSGT00940000155136
Arctic ground squirrel	MODERN SPECIES	353															C1orf87 (ENSUPAG00010012098)	NFIA (ENSUPAG00010012032) ##22	ENSUPAG00010012027	TM2D1 (ENSUPAG00010012015)	ENSUPAG00010011992	PATJ (ENSUPAG00010011756)
Squirrel	MODERN SPECIES	122	PRKAA2 (ENSSTOG00000010330)	FYB2 (ENSSTOG00000008494)	C8A (ENSSTOG00000008536)	C8B (ENSSTOG00000008556)	DAB1 (ENSSTOG00000005967)	OMA1 (ENSSTOG00000002080)	TACSTD2 (ENSSTOG00000002090) ##36	ENSSTOG00000012575	MYSM1 (ENSSTOG00000024678)	JUN (ENSSTOG00000028549)	FGGY (ENSSTOG00000014941)	ENSSTOG00000027301	ENSSTOG00000033170	ENSSTOG00000015921	C1orf87 (ENSSTOG00000001016)	NFIA (ENSSTOG00000002734) ##22	TM2D1 (ENSSTOG00000008651)	PATJ (ENSSTOG00000015380)
Alpin marmot	MODERN SPECIES	15	PLPP3 (ENSMMMG00000015064)	PRKAA2 (ENSMMMG00000015055)	ENSMMMG00000015035	C8A (ENSMMMG00000015000)	C8B (ENSMMMG00000014972)	DAB1 (ENSMMMG00000014953)	OMA1 (ENSMMMG00000014939)	TACSTD2 (ENSMMMG00000014938) ##36	MYSM1 (ENSMMMG00000014904)	JUN (ENSMMMG00000014900)	FGGY (ENSMMMG00000014858)	HOOK1 (ENSMMMG00000014799)	CYP2J2 (ENSMMMG00000014784)	ENSMMMG00000014775	ENSMMMG00000014756	NFIA (ENSMMMG00000014681) ##22	TM2D1 (ENSMMMG00000014648)	ENSMMMG00000014629	ENSMMMG00000014624	PATJ (ENSMMMG00000014420)	USP1 (ENSMMMG00000014385)	ANGPTL3 (ENSMMMG00000014378)	DOCK7 (ENSMMMG00000013902)	ATG4C (ENSMMMG00000013865)	ALG6 (ENSMMMG00000013823)	ITGB3BP (ENSMMMG00000013816)	EFCAB7 (ENSMMMG00000013790)	PGM1 (ENSMMMG00000013759)	ROR1 (ENSMMMG00000013738)	UBE2U (ENSMMMG00000013711)	CACHD1 (ENSMMMG00000013619)
Eurasian red squirrel	MODERN SPECIES		C8A (ENSSVLG00005003067)	ENSSVLG00005003101	C8B (ENSSVLG00005003135)	DAB1 (ENSSVLG00005003231)	ENSSVLG00005003346	OMA1 (ENSSVLG00005003366)	TACSTD2 (ENSSVLG00005003391) ##36	ENSSVLG00005003403	ENSSVLG00005003426	ENSSVLG00005003468	JUN (ENSSVLG00005003485)	FGGY (ENSSVLG00005003528)	HOOK1 (ENSSVLG00005003597)	CYP2J2 (ENSSVLG00005003643)	C1orf87 (ENSSVLG00005003680)	NFIA (ENSSVLG00005003823) ##22	TM2D1 (ENSSVLG00005003968)	PATJ (ENSSVLG00005004098)	ENSSVLG00005004503	L1TD1 (ENSSVLG00005004562)	KANK4 (ENSSVLG00005004588)	USP1 (ENSSVLG00005004642)	DOCK7 (ENSSVLG00005005302)	ANGPTL3 (ENSSVLG00005007525)	ENSSVLG00005007602	ENSSVLG00005007631	ENSSVLG00005007657	ATG4C (ENSSVLG00005007673)	ENSSVLG00005007744	FOXD3 (ENSSVLG00005007758)	ENSSVLG00005007774
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00950000182879.b	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256
Kangaroo rat	MODERN SPECIES	380	Usp24 (ENSDORG00000014930)	Plpp3 (ENSDORG00000025905)	Prkaa2 (ENSDORG00000009718)	Fyb2 (ENSDORG00000009719)	C8a (ENSDORG00000014884)	C8b (ENSDORG00000004936)	Dab1 (ENSDORG00000008981)	Oma1 (ENSDORG00000001344)	Tacstd2 (ENSDORG00000001347) ##36	Mysm1 (ENSDORG00000029861)	Fggy (ENSDORG00000014277)	Hook1 (ENSDORG00000014283)	ENSDORG00000013315	ENSDORG00000014288	Gm12695 (ENSDORG00000006672)	Nfia (ENSDORG00000005150) ##22	ENSDORG00000005379	Patj (ENSDORG00000004176)	Ndc1 (ENSDORG00000008806)	Glis1 (ENSDORG00000007361)	ENSDORG00000007358	Lrp8 (ENSDORG00000015656)	Magoh (ENSDORG00000015654)	ENSDORG00000029795	Cpt2 (ENSDORG00000025081)	ENSDORG00000024608	Slc1a7 (ENSDORG00000009902)	Podn (ENSDORG00000009899)	Scp2 (ENSDORG00000007773)	Echdc2 (ENSDORG00000016652)	Zyg11a (ENSDORG00000016160)
Myomorpha	ANCESTRAL SPECIES	55								ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00950000182879.b	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00860000136250	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Muroidea	ANCESTRAL SPECIES	3							ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00950000182879.b.a.b.b	ENSGT00950000182879.b.a.a	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00860000136250	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000161278	ENSGT00940000158840	ENSGT00390000010786	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00900000143271	ENSGT00940000159251	ENSGT00940000155417.a.b	ENSGT00950000182879.b.a.b.b	ENSGT00940000155417.b	ENSGT00950000182879.b.a.b.a.a	ENSGT00940000155417.a.a	ENSGT00950000182879.b.a.a	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00860000136250	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00390000007109	ENSGT00940000161278	ENSGT00940000158840	ENSGT00390000010786	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00900000143271	ENSGT00940000159251	ENSGT00940000155417.a.b	ENSGT00950000182879.b.a.b.b	ENSGT00940000155417.b	ENSGT00950000182879.b.a.b.a.a	ENSGT00950000182879.b.a.b.a.b	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00860000136250	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00390000007109	ENSGT00940000161278	ENSGT00940000158840	ENSGT00390000010786	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00900000143271	ENSGT00940000159251	ENSGT00940000155417.a.b	ENSGT00950000182879.b.a.b.b	ENSGT00940000155417.b	ENSGT00950000182879.b.a.b.a.a	ENSGT00950000182879.b.a.b.a.b	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00860000136250	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Northern American deer mouse	MODERN SPECIES	11	Eqtn (ENSPEMG00000016567)	Mysm1 (ENSPEMG00000011781)	ENSPEMG00000012194	Jun (ENSPEMG00000014041)	Fggy (ENSPEMG00000007085)	ENSPEMG00000026283	Hook1 (ENSPEMG00000003851)	Cyp2j13 (ENSPEMG00000018564)	ENSPEMG00000012209	ENSPEMG00000013709	Cyp2j6 (ENSPEMG00000017727)	Cyp2j9 (ENSPEMG00000000230)	ENSPEMG00000026151	ENSPEMG00000009838	Gm12695 (ENSPEMG00000010497)	Nfia (ENSPEMG00000005756) ##22	Tm2d1 (ENSPEMG00000004612)	Patj (ENSPEMG00000014313)	L1td1 (ENSPEMG00000008068)	Kank4 (ENSPEMG00000012891)	Usp1 (ENSPEMG00000026352)	Dock7 (ENSPEMG00000018126)	Angptl3 (ENSPEMG00000000689)	Atg4c (ENSPEMG00000012725)	ENSPEMG00000026760	ENSPEMG00000016606	Alg6 (ENSPEMG00000018498)	Itgb3bp (ENSPEMG00000011292)	Efcab7 (ENSPEMG00000018535)	Pgm1 (ENSPEMG00000000464)	Ror1 (ENSPEMG00000009106)
Prairie vole	MODERN SPECIES	1	Tmem269 (ENSMOCG00000014096)	ENSMOCG00000021602	ENSMOCG00000009079	Ermap (ENSMOCG00000020543)	Zfp691 (ENSMOCG00000009065)	Slc2a1 (ENSMOCG00000021632)	Lao1 (ENSMOCG00000001605)	ENSMOCG00000015307	ENSMOCG00000022413	ENSMOCG00000012714	Or13p8 (ENSMOCG00000008289)	ENSMOCG00000005805	Cyp2j6 (ENSMOCG00000018597)	ENSMOCG00000010318	Gm12695 (ENSMOCG00000013607)	Nfia (ENSMOCG00000007715) ##22	ENSMOCG00000008446	Tm2d1 (ENSMOCG00000007667)	Patj (ENSMOCG00000020085)	L1td1 (ENSMOCG00000007037)	Kank4 (ENSMOCG00000020622)	Usp1 (ENSMOCG00000013703)	Dock7 (ENSMOCG00000012407)	Angptl3 (ENSMOCG00000010506)	Atg4c (ENSMOCG00000013316)	ENSMOCG00000021953	Foxd3 (ENSMOCG00000003755)	Alg6 (ENSMOCG00000007266)	Itgb3bp (ENSMOCG00000020964)	Efcab7 (ENSMOCG00000005332)	Pgm1 (ENSMOCG00000011278)
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00550000074944	ENSGT00390000007109	ENSGT00940000161278	ENSGT00940000158840	ENSGT00390000010786	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00900000143271	ENSGT00940000159251	ENSGT00950000182879.b.a.a	ENSGT00940000155417.b	ENSGT00950000182879.b.a.b.a.a	ENSGT00950000182879.b.a.b.a.b	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00860000136250	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Chinese hamster chok1gshd	MODERN SPECIES	111	Plaa (ENSCGRG00001024275)	Lrrc19 (ENSCGRG00001023151)	Ift74 (ENSCGRG00001020714)	Tek (ENSCGRG00001018441)	Eqtn (ENSCGRG00001001186)	Mysm1 (ENSCGRG00001015762)	Jun (ENSCGRG00001011810)	Fggy (ENSCGRG00001024005)	ENSCGRG00001008656	Hook1 (ENSCGRG00001001100)	ENSCGRG00001005478	ENSCGRG00001020085	Cyp2j6 (ENSCGRG00001017724)	ENSCGRG00001015523	Gm12695 (ENSCGRG00001014021)	Nfia (ENSCGRG00001000754) ##22	Tm2d1 (ENSCGRG00001017276)	ENSCGRG00001014726	Patj (ENSCGRG00001024524)	L1td1 (ENSCGRG00001024238)	Kank4 (ENSCGRG00001023583)	Usp1 (ENSCGRG00001018963)	Angptl3 (ENSCGRG00001024053)	Dock7 (ENSCGRG00001017762)	ENSCGRG00001002780	Atg4c (ENSCGRG00001000630)	ENSCGRG00001002098	Foxd3 (ENSCGRG00001009393)	Alg6 (ENSCGRG00001024513)	Itgb3bp (ENSCGRG00001023317)	Efcab7 (ENSCGRG00001013291)
Golden Hamster	MODERN SPECIES	662	Plaa (ENSMAUG00000013719)	Ift74 (ENSMAUG00000001215)	ENSMAUG00000006577	Tek (ENSMAUG00000018555)	Eqtn (ENSMAUG00000015891)	Mysm1 (ENSMAUG00000014841)	ENSMAUG00000014400	Jun (ENSMAUG00000007038)	Fggy (ENSMAUG00000019211)	Hook1 (ENSMAUG00000017707)	ENSMAUG00000008711	ENSMAUG00000021213	Cyp2j6 (ENSMAUG00000021242)	ENSMAUG00000003529	Gm12695 (ENSMAUG00000020018)	Nfia (ENSMAUG00000012950) ##22	Tm2d1 (ENSMAUG00000017246)	Patj (ENSMAUG00000021478)	L1td1 (ENSMAUG00000020769)	Kank4 (ENSMAUG00000020783)	Usp1 (ENSMAUG00000010459)	Dock7 (ENSMAUG00000005545)	Angptl3 (ENSMAUG00000006669)	Atg4c (ENSMAUG00000017548)	ENSMAUG00000011992	Foxd3 (ENSMAUG00000008235)	Alg6 (ENSMAUG00000018206)	Itgb3bp (ENSMAUG00000019227)	Efcab7 (ENSMAUG00000012770)	Pgm1 (ENSMAUG00000000807)
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000161278	ENSGT00940000158840	ENSGT00390000010786	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00900000143271	ENSGT00940000159251	ENSGT00940000155417.a.b	ENSGT00950000182879.b.a.b.b.c	ENSGT00950000182879.b.a.b.b.d.a	ENSGT00940000155417.a.a	ENSGT00950000182879.b.a.a	ENSGT00390000008678	ENSGT00860000136320	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00860000136250	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Mus	ANCESTRAL SPECIES	3	ENSGT00940000161278	ENSGT00940000158840	ENSGT00390000010786	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.a.b	ENSGT00950000182879.b.a.b.b.c	ENSGT00950000182879.b.a.b.b.d.a	ENSGT00940000155417.a.a	ENSGT00950000182879.b.a.a	ENSGT00390000008678	ENSGT00860000135704	ENSGT00860000136320	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00860000136189	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00860000136250	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000161278	ENSGT00940000158840	ENSGT00390000010786	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.a.b	ENSGT00950000182879.b.a.b.b.c	ENSGT00950000182879.b.a.b.b.d.a	ENSGT00940000155417.a.a	ENSGT00950000182879.b.a.a	ENSGT00390000008678	ENSGT00860000135704	ENSGT00860000136320	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00860000136189	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00860000136250	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.a.b	ENSGT00950000182879.b.a.b.b.c	ENSGT00950000182879.b.a.b.b.d.a	ENSGT00950000182879.b.a.b.b.d.b.a	ENSGT00950000182879.b.a.b.b.d.b.b	ENSGT00950000182879.b.a.b.a.a	ENSGT00940000155417.a.a	ENSGT00950000182879.b.a.a	ENSGT00390000008678	ENSGT00860000135704	ENSGT00860000136320	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00860000136189	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00860000136250	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417.a.b	ENSGT00950000182879.b.a.b.b.c	ENSGT00950000182879.b.a.b.b.d.a	ENSGT00950000182879.b.a.b.b.d.b.a	ENSGT00950000182879.b.a.b.b.d.b.b	ENSGT00950000182879.b.a.b.a.a	ENSGT00940000155417.a.a	ENSGT00950000182879.b.a.a	ENSGT00390000008678	ENSGT00860000135704	ENSGT00860000136320	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00860000136189	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00860000136250	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b
Steppe mouse	MODERN SPECIES	2911															ENSMSIG00000018081	Nfia (ENSMSIG00000018111) ##22	Tm2d1 (ENSMSIG00000018301)	Patj (ENSMSIG00000018343)	ENSMSIG00000019136	L1td1 (ENSMSIG00000019160)	Kank4 (ENSMSIG00000019176)	I0C0044D17Rik (ENSMSIG00000019204)
spretus	MODERN SPECIES	13	Mysm1 (MGP_SPRETEiJ_G0027135)	Jun (MGP_SPRETEiJ_G0027136)	Fggy (MGP_SPRETEiJ_G0027137)	Hook1 (MGP_SPRETEiJ_G0027138)	Cyp2j13 (MGP_SPRETEiJ_G0027139)	Cyp2j12 (MGP_SPRETEiJ_G0027140)	Cyp2j7 (MGP_SPRETEiJ_G0027141)	Cyp2j11 (MGP_SPRETEiJ_G0027142)	Cyp2j8 (MGP_SPRETEiJ_G0027143)	Cyp2j6 (MGP_SPRETEiJ_G0027144)	Cyp2j9 (MGP_SPRETEiJ_G0027145)	Cyp2j5 (MGP_SPRETEiJ_G0027146)	Gm12695 (MGP_SPRETEiJ_G0027147)	MGP_SPRETEiJ_G0027148	MGP_SPRETEiJ_G0027149	Nfia (MGP_SPRETEiJ_G0027150) ##22	Tm2d1 (MGP_SPRETEiJ_G0027151)	Patj (MGP_SPRETEiJ_G0027152)	L1td1 (MGP_SPRETEiJ_G0027153)	Kank4 (MGP_SPRETEiJ_G0027154)	I0C0044D17Rik (MGP_SPRETEiJ_G0027155)	MGP_SPRETEiJ_G0027156	Dock7 (MGP_SPRETEiJ_G0027157)	Angptl3 (MGP_SPRETEiJ_G0027158)	Atg4c (MGP_SPRETEiJ_G0027159)	MGP_SPRETEiJ_G0027160	Foxd3 (MGP_SPRETEiJ_G0027162)	Alg6 (MGP_SPRETEiJ_G0027163)	Itgb3bp (MGP_SPRETEiJ_G0027164)	Efcab7 (MGP_SPRETEiJ_G0027165)	Pgm1 (MGP_SPRETEiJ_G0027166)
Mouse	MODERN SPECIES	13	Eqtn (ENSMUSG00000028575)	Mysm1 (ENSMUSG00000062627)	Jun (ENSMUSG00000052684)	Fggy (ENSMUSG00000028573)	Hook1 (ENSMUSG00000028572)	Cyp2j13 (ENSMUSG00000028571)	Cyp2j12 (ENSMUSG00000081225)	Cyp2j7 (ENSMUSG00000081362)	Cyp2j11 (ENSMUSG00000066097)	Cyp2j8 (ENSMUSG00000082932)	Cyp2j6 (ENSMUSG00000052914)	Cyp2j9 (ENSMUSG00000015224)	Cyp2j5 (ENSMUSG00000052520)	Gm12695 (ENSMUSG00000078639)	E130114P18Rik (ENSMUSG00000048747)	Nfia (ENSMUSG00000028565) ##22	Tm2d1 (ENSMUSG00000028563)	Patj (ENSMUSG00000061859)	L1td1 (ENSMUSG00000087166)	Kank4 (ENSMUSG00000035407)	I0C0044D17Rik (ENSMUSG00000073794)	Usp1 (ENSMUSG00000028560)	Dock7 (ENSMUSG00000028556)	Angptl3 (ENSMUSG00000028553)	Atg4c (ENSMUSG00000028550)	Foxd3 (ENSMUSG00000067261)	Alg6 (ENSMUSG00000073792)	Itgb3bp (ENSMUSG00000028549)	Efcab7 (ENSMUSG00000073791)	Pgm1 (ENSMUSG00000025791)	Ror1 (ENSMUSG00000035305)
Ryukyu mouse	MODERN SPECIES	13	Tek (MGP_CAROLIEiJ_G0026167)	Eqtn (MGP_CAROLIEiJ_G0026168)	Mysm1 (MGP_CAROLIEiJ_G0026169)	Jun (MGP_CAROLIEiJ_G0026170)	Fggy (MGP_CAROLIEiJ_G0026171)	Hook1 (MGP_CAROLIEiJ_G0026172)	Cyp2j13 (MGP_CAROLIEiJ_G0026173)	Cyp2j12 (MGP_CAROLIEiJ_G0026174)	Cyp2j7 (MGP_CAROLIEiJ_G0026175)	MGP_CAROLIEiJ_G0026176	Cyp2j9 (MGP_CAROLIEiJ_G0026177)	Cyp2j5 (MGP_CAROLIEiJ_G0026178)	Gm12695 (MGP_CAROLIEiJ_G0026179)	MGP_CAROLIEiJ_G0026180	MGP_CAROLIEiJ_G0026181	Nfia (MGP_CAROLIEiJ_G0026182) ##22	Tm2d1 (MGP_CAROLIEiJ_G0026183)	Patj (MGP_CAROLIEiJ_G0026184)	L1td1 (MGP_CAROLIEiJ_G0026185)	Kank4 (MGP_CAROLIEiJ_G0026186)	MGP_CAROLIEiJ_G0026187	MGP_CAROLIEiJ_G0026188	Dock7 (MGP_CAROLIEiJ_G0026189)	Angptl3 (MGP_CAROLIEiJ_G0026190)	Atg4c (MGP_CAROLIEiJ_G0026191)	MGP_CAROLIEiJ_G0026192	Foxd3 (MGP_CAROLIEiJ_G0026193)	Alg6 (MGP_CAROLIEiJ_G0026194)	Itgb3bp (MGP_CAROLIEiJ_G0026195)	MGP_CAROLIEiJ_G0026196	Pgm1 (MGP_CAROLIEiJ_G0026197)
Shrew mouse	MODERN SPECIES	19	Tek (MGP_PahariEiJ_G0028504)	MGP_PahariEiJ_G0028505	Mysm1 (MGP_PahariEiJ_G0028506)	Jun (MGP_PahariEiJ_G0028507)	Fggy (MGP_PahariEiJ_G0028508)	Hook1 (MGP_PahariEiJ_G0028509)	Cyp2j13 (MGP_PahariEiJ_G0028510)	Cyp2j12 (MGP_PahariEiJ_G0028511)	Cyp2j7 (MGP_PahariEiJ_G0028512)	Cyp2j6 (MGP_PahariEiJ_G0028513)	Cyp2j9 (MGP_PahariEiJ_G0028514)	Cyp2j5 (MGP_PahariEiJ_G0028515)	Gm12695 (MGP_PahariEiJ_G0028516)	MGP_PahariEiJ_G0028517	MGP_PahariEiJ_G0028518	Nfia (MGP_PahariEiJ_G0028519) ##22	Tm2d1 (MGP_PahariEiJ_G0028520)	Patj (MGP_PahariEiJ_G0028521)	L1td1 (MGP_PahariEiJ_G0028522)	Kank4 (MGP_PahariEiJ_G0028523)	MGP_PahariEiJ_G0028524	Usp1 (MGP_PahariEiJ_G0028525)	Dock7 (MGP_PahariEiJ_G0028526)	Angptl3 (MGP_PahariEiJ_G0028527)	Atg4c (MGP_PahariEiJ_G0028528)	MGP_PahariEiJ_G0028529	Foxd3 (MGP_PahariEiJ_G0028530)	Alg6 (MGP_PahariEiJ_G0028531)	Itgb3bp (MGP_PahariEiJ_G0028532)	MGP_PahariEiJ_G0028533	Pgm1 (MGP_PahariEiJ_G0028534)
Rat	MODERN SPECIES	15	Ift74 (ENSRNOG00000008075)	Lrrc19 (ENSRNOG00000022225)	Tek (ENSRNOG00000008587)	Eqtn (ENSRNOG00000026323)	Mysm1 (ENSRNOG00000026299)	Jun (ENSRNOG00000026293)	Fggy (ENSRNOG00000008907)	AABR07049299.1 (ENSRNOG00000026234)	Hook1 (ENSRNOG00000026226)	ENSRNOG00000070878	Cyp2j10 (ENSRNOG00000042224)	Cyp2j16 (ENSRNOG00000030466)	Cyp2j3 (ENSRNOG00000031004)	C5h1orf87 (ENSRNOG00000026169)	ENSRNOG00000065127	Nfia (ENSRNOG00000006966) ##22	AABR07049329.1 (ENSRNOG00000030107)	Tm2d1 (ENSRNOG00000007527)	Patj (ENSRNOG00000007551)	L1td1 (ENSRNOG00000050670)	Kank4 (ENSRNOG00000007779)	Usp1 (ENSRNOG00000007890)	Dock7 (ENSRNOG00000008298)	Angptl3 (ENSRNOG00000008638)	Atg4c (ENSRNOG00000008767)	ENSRNOG00000064901	Foxd3 (ENSRNOG00000066522)	Alg6 (ENSRNOG00000009045)	Itgb3bp (ENSRNOG00000009116)	Efcab7 (ENSRNOG00000009782)	Pgm1 (ENSRNOG00000009889)
Upper Galilee mountains blind mole rat	MODERN SPECIES	469															ENSNGAG00000016606	Nfia (ENSNGAG00000021722) ##22	ENSNGAG00000023134	Tm2d1 (ENSNGAG00000020795)	ENSNGAG00000024280
Lesser Egyptian jerboa	MODERN SPECIES	98	ENSJJAG00000016243	ENSJJAG00000016153	Serbp1 (ENSJJAG00000023871)	Il12rb2 (ENSJJAG00000019502)	Tacstd2 (ENSJJAG00000014125) ##36	Mysm1 (ENSJJAG00000016612)	ENSJJAG00000016007	Jun (ENSJJAG00000001078)	ENSJJAG00000022820	Fggy (ENSJJAG00000021024)	Hook1 (ENSJJAG00000017805)	ENSJJAG00000016631	ENSJJAG00000016230	ENSJJAG00000016141	ENSJJAG00000013782	Nfia (ENSJJAG00000012495) ##22	ENSJJAG00000010329	Tm2d1 (ENSJJAG00000008343)	Patj (ENSJJAG00000022235)	ENSJJAG00000019020	Usp1 (ENSJJAG00000017329)	Angptl3 (ENSJJAG00000016186)	Dock7 (ENSJJAG00000011659)	Atg4c (ENSJJAG00000016837)	ENSJJAG00000016061	Foxd3 (ENSJJAG00000015766)	Alg6 (ENSJJAG00000012437)	Efcab7 (ENSJJAG00000011831)	Pgm1 (ENSJJAG00000011313)	Ror1 (ENSJJAG00000010121)	ENSJJAG00000009546
Lagomorpha	ANCESTRAL SPECIES	8	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT01010000222787	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568	ENSGT00940000158648	ENSGT00940000157092
Pika	MODERN SPECIES	2682																NFIA (ENSOPRG00000015293) ##22
Rabbit	MODERN SPECIES	4	FYB2 (ENSOCUG00000016036)	C8A (ENSOCUG00000017178)	C8B (ENSOCUG00000017190)	ENSOCUG00000031888	DAB1 (ENSOCUG00000017204)	GEMIN8 (ENSOCUG00000022328)	ENSOCUG00000026072	OMA1 (ENSOCUG00000013456)	TACSTD2 (ENSOCUG00000013892) ##36	MYSM1 (ENSOCUG00000029356)	JUN (ENSOCUG00000001212)	ENSOCUG00000000936	HOOK1 (ENSOCUG00000004180)	CYP2J1 (ENSOCUG00000004199)	ENSOCUG00000016077	NFIA (ENSOCUG00000005893) ##22	ENSOCUG00000035109	TM2D1 (ENSOCUG00000010235)	PATJ (ENSOCUG00000015766)	KANK4 (ENSOCUG00000007701)	USP1 (ENSOCUG00000012942)	ENSOCUG00000035373	ANGPTL3 (ENSOCUG00000000906)	DOCK7 (ENSOCUG00000012948)	ATG4C (ENSOCUG00000007695)	ENSOCUG00000036422	ALG6 (ENSOCUG00000000281)	ITGB3BP (ENSOCUG00000035590)	EFCAB7 (ENSOCUG00000000286)	PGM1 (ENSOCUG00000038711)	ENSOCUG00000031933
Primates	ANCESTRAL SPECIES	4	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256
Mouse lemur	MODERN SPECIES	11	PCSK9 (ENSMICG00000014849)	USP24 (ENSMICG00000014857)	PLPP3 (ENSMICG00000012602)	PRKAA2 (ENSMICG00000012632)	FYB2 (ENSMICG00000000716)	C8A (ENSMICG00000000722)	C8B (ENSMICG00000000727)	DAB1 (ENSMICG00000000730)	OMA1 (ENSMICG00000005121)	MYSM1 (ENSMICG00000030414)	FGGY (ENSMICG00000013422)	HOOK1 (ENSMICG00000027305)	CYP2J90P (ENSMICG00000008762)	ENSMICG00000013472	C1orf87 (ENSMICG00000013485)	NFIA (ENSMICG00000005075) ##22	ENSMICG00000012681	ENSMICG00000014211	PATJ (ENSMICG00000014246)	L1TD1 (ENSMICG00000045847)	KANK4 (ENSMICG00000001495)	USP1 (ENSMICG00000001502)	ANGPTL3 (ENSMICG00000001535)	DOCK7 (ENSMICG00000001507)	ATG4C (ENSMICG00000001538)	FOXD3 (ENSMICG00000044158)	ALG6 (ENSMICG00000000388)	ENSMICG00000046047	ENSMICG00000042686	EFCAB7 (ENSMICG00000013626)	ENSMICG00000037361
Lemuriformes_a	ANCESTRAL SPECIES	20	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Coquerels sifaka	MODERN SPECIES	162	ENSPCOG00000011923	ENSPCOG00000027588	PLPP3 (ENSPCOG00000023551)	ENSPCOG00000013731	PRKAA2 (ENSPCOG00000026136)	FYB2 (ENSPCOG00000012343)	C8A (ENSPCOG00000027741)	C8B (ENSPCOG00000018134)	DAB1 (ENSPCOG00000026936)	OMA1 (ENSPCOG00000024910)	MYSM1 (ENSPCOG00000016519)	FGGY (ENSPCOG00000028613)	CYP2J2 (ENSPCOG00000026699)	CYP2J89 (ENSPCOG00000020225)	C1orf87 (ENSPCOG00000021292)	NFIA (ENSPCOG00000024842) ##22	ENSPCOG00000013689	ENSPCOG00000026994	TM2D1 (ENSPCOG00000009377)	PATJ (ENSPCOG00000016693)	L1TD1 (ENSPCOG00000005879)	KANK4 (ENSPCOG00000016012)	USP1 (ENSPCOG00000027490)	ANGPTL3 (ENSPCOG00000017735)	ENSPCOG00000018206	DOCK7 (ENSPCOG00000015316)	ATG4C (ENSPCOG00000012978)	ENSPCOG00000001381	FOXD3 (ENSPCOG00000004911)	ALG6 (ENSPCOG00000013331)	ITGB3BP (ENSPCOG00000016479)
Greater bamboo lemur	MODERN SPECIES	524												FGGY (ENSPSMG00000005587)	HOOK1 (ENSPSMG00000005576)	CYP2J2 (ENSPSMG00000005547)	C1orf87 (ENSPSMG00000005521)	NFIA (ENSPSMG00000005450) ##22	TM2D1 (ENSPSMG00000005394)	PATJ (ENSPSMG00000005232)	L1TD1 (ENSPSMG00000005035)
Bushbaby	MODERN SPECIES	181	FYB2 (ENSOGAG00000002716)	C8A (ENSOGAG00000016030)	C8B (ENSOGAG00000016034)	DAB1 (ENSOGAG00000016042)	OMA1 (ENSOGAG00000005686)	TACSTD2 (ENSOGAG00000011588) ##36	MYSM1 (ENSOGAG00000004571)	JUN (ENSOGAG00000005602)	FGGY (ENSOGAG00000014721)	HOOK1 (ENSOGAG00000014723)	CYP2J2 (ENSOGAG00000024697)	CYP2J80 (ENSOGAG00000025873)	CYP2J81 (ENSOGAG00000030361)	C1orf87 (ENSOGAG00000011715)	ENSOGAG00000026267	NFIA (ENSOGAG00000033949) ##22	TM2D1 (ENSOGAG00000002838)	PATJ (ENSOGAG00000002988)	KANK4 (ENSOGAG00000031366)	USP1 (ENSOGAG00000009357)	DOCK7 (ENSOGAG00000009360)	ANGPTL3 (ENSOGAG00000009379)	ATG4C (ENSOGAG00000004020)	EFCAB7 (ENSOGAG00000005254)	PGM1 (ENSOGAG00000005257)	ROR1 (ENSOGAG00000005259)
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Tarsier	MODERN SPECIES	5580																NFIA (ENSTSYG00000014719) ##22	TM2D1 (ENSTSYG00000000632)	PATJ (ENSTSYG00000011484)	KANK4 (ENSTSYG00000003894)	USP1 (ENSTSYG00000031006)	ENSTSYG00000036091
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000154674.i.b	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000154674.i.b	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00940000153112.D.n.a.a.a.b	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668.e	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000154674.i.b	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00940000153385.b.a.b.mc	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668.e	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243.e	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B
Marmoset	MODERN SPECIES	19	DAB1 (ENSCJAG00000015941)	ENSCJAG00000022997	ENSCJAG00000070548	ENSCJAG00000084546	OMA1 (ENSCJAG00000016000)	ENSCJAG00000074487	TACSTD2 (ENSCJAG00000016017) ##36	MYSM1 (ENSCJAG00000016020)	FGGY (ENSCJAG00000016043)	ENSCJAG00000022957	HOOK1 (ENSCJAG00000016077)	CYP2J2 (ENSCJAG00000016130)	C1orf87 (ENSCJAG00000016137)	ENSCJAG00000053189	ENSCJAG00000022998	NFIA (ENSCJAG00000016165) ##22	ENSCJAG00000078946	TM2D1 (ENSCJAG00000042963)	PATJ (ENSCJAG00000016186)	KANK4 (ENSCJAG00000016275)	USP1 (ENSCJAG00000016287)	DOCK7 (ENSCJAG00000016311)	ANGPTL3 (ENSCJAG00000016461)	ATG4C (ENSCJAG00000016480)	ENSCJAG00000081048	ENSCJAG00000082160	ALG6 (ENSCJAG00000016521)	ITGB3BP (ENSCJAG00000016555)	ENSCJAG00000078165	ENSCJAG00000016590	ROR1 (ENSCJAG00000016620)
Cebidae_a	ANCESTRAL SPECIES		ENSGT00940000154674.i.b	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00940000153385.b.a.b.mc	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668.e	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243.e.a	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B
Bolivian squirrel monkey	MODERN SPECIES	45	PRKAA2 (ENSSBOG00000036202)	FYB2 (ENSSBOG00000024468)	C8A (ENSSBOG00000023783)	C8B (ENSSBOG00000034357)	DAB1 (ENSSBOG00000030885)	ENSSBOG00000024749	OMA1 (ENSSBOG00000023199)	TACSTD2 (ENSSBOG00000024148) ##36	MYSM1 (ENSSBOG00000031552)	ENSSBOG00000029734	FGGY (ENSSBOG00000031213)	HOOK1 (ENSSBOG00000032069)	CYP2J2 (ENSSBOG00000033096)	C1orf87 (ENSSBOG00000033425)	ENSSBOG00000024205	NFIA (ENSSBOG00000030190) ##22	ENSSBOG00000028260	ENSSBOG00000028010	PATJ (ENSSBOG00000022857)	KANK4 (ENSSBOG00000020644)	USP1 (ENSSBOG00000020735)	ANGPTL3 (ENSSBOG00000035830)	DOCK7 (ENSSBOG00000027948)	ATG4C (ENSSBOG00000032872)	ENSSBOG00000012669	ENSSBOG00000033019	ENSSBOG00000022938	ALG6 (ENSSBOG00000020498)	ENSSBOG00000033167	EFCAB7 (ENSSBOG00000024450)	PGM1 (ENSSBOG00000025450)
Capuchin	MODERN SPECIES	135															ENSCCAG00000002026	NFIA (ENSCCAG00000034568) ##22	ENSCCAG00000037571	ENSCCAG00000031088	PATJ (ENSCCAG00000020603)	KANK4 (ENSCCAG00000020881)	ENSCCAG00000032139	ANGPTL3 (ENSCCAG00000037800)	DOCK7 (ENSCCAG00000036383)	ATG4C (ENSCCAG00000014124)	FOXD3 (ENSCCAG00000020242)	ENSCCAG00000037577	ALG6 (ENSCCAG00000026213)	ENSCCAG00000019669	ENSCCAG00000023464	ITGB3BP (ENSCCAG00000023808)	EFCAB7 (ENSCCAG00000030206)
Mas night monkey	MODERN SPECIES	1222	PLPP3 (ENSANAG00000025360)	PRKAA2 (ENSANAG00000038337)	FYB2 (ENSANAG00000027030)	C8A (ENSANAG00000030871)	C8B (ENSANAG00000027216)	DAB1 (ENSANAG00000027133)	ENSANAG00000034189	ENSANAG00000003836	OMA1 (ENSANAG00000031629)	TACSTD2 (ENSANAG00000005680) ##36	MYSM1 (ENSANAG00000023099)	FGGY (ENSANAG00000036832)	HOOK1 (ENSANAG00000033388)	CYP2J2 (ENSANAG00000033520)	C1orf87 (ENSANAG00000023663)	NFIA (ENSANAG00000036346) ##22	ENSANAG00000030015	ENSANAG00000003030	ENSANAG00000037649	ENSANAG00000034084	PATJ (ENSANAG00000000542)	ENSANAG00000036983	KANK4 (ENSANAG00000036007)	USP1 (ENSANAG00000034698)	DOCK7 (ENSANAG00000016461)	ANGPTL3 (ENSANAG00000015249)	ATG4C (ENSANAG00000022513)	FOXD3 (ENSANAG00000002392)	ENSANAG00000029682	ALG6 (ENSANAG00000022443)	ITGB3BP (ENSANAG00000028085)
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00940000164161.b.a.b	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00940000164161.b.a.b	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000012628.a.a.d
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000154674.i.b	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000012628.a.a.d
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000154674.i.b	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000012628.a.a.d
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES		PLPP3 (ENSGGOG00000000309)	PRKAA2 (ENSGGOG00000009076)	FYB2 (ENSGGOG00000009087)	C8A (ENSGGOG00000013973)	C8B (ENSGGOG00000008556)	DAB1 (ENSGGOG00000024836)	OMA1 (ENSGGOG00000001213)	ENSGGOG00000025125	TACSTD2 (ENSGGOG00000012166) ##36	ENSGGOG00000041028	MYSM1 (ENSGGOG00000005238)	FGGY (ENSGGOG00000036583)	HOOK1 (ENSGGOG00000015355)	CYP2J2 (ENSGGOG00000001607)	C1orf87 (ENSGGOG00000011908)	ENSGGOG00000027445 ##22	ENSGGOG00000043710	ENSGGOG00000036939 ##22	ENSGGOG00000043907	TM2D1 (ENSGGOG00000008515)	PATJ (ENSGGOG00000010129)	ENSGGOG00000023722	L1TD1 (ENSGGOG00000026365)	KANK4 (ENSGGOG00000041061)	USP1 (ENSGGOG00000024567)	DOCK7 (ENSGGOG00000025768)	ANGPTL3 (ENSGGOG00000003946)	ATG4C (ENSGGOG00000007252)	ENSGGOG00000027326	ALG6 (ENSGGOG00000015986)	ITGB3BP (ENSGGOG00000004727)
Gorilla	MODERN SPECIES		PGM1 (ENSGGOG00000016004)	EFCAB7 (ENSGGOG00000012467)	ITGB3BP (ENSGGOG00000004727)	ALG6 (ENSGGOG00000015986)	ENSGGOG00000027326	ATG4C (ENSGGOG00000007252)	ANGPTL3 (ENSGGOG00000003946)	DOCK7 (ENSGGOG00000025768)	USP1 (ENSGGOG00000024567)	KANK4 (ENSGGOG00000041061)	L1TD1 (ENSGGOG00000026365)	ENSGGOG00000023722	PATJ (ENSGGOG00000010129)	TM2D1 (ENSGGOG00000008515)	ENSGGOG00000043907	ENSGGOG00000036939 ##22	ENSGGOG00000043710	ENSGGOG00000027445 ##22	C1orf87 (ENSGGOG00000011908)	CYP2J2 (ENSGGOG00000001607)	HOOK1 (ENSGGOG00000015355)	FGGY (ENSGGOG00000036583)	MYSM1 (ENSGGOG00000005238)	ENSGGOG00000041028	TACSTD2 (ENSGGOG00000012166) ##36	ENSGGOG00000025125	OMA1 (ENSGGOG00000001213)	DAB1 (ENSGGOG00000024836)	C8B (ENSGGOG00000008556)	C8A (ENSGGOG00000013973)	FYB2 (ENSGGOG00000009087)
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000012628.a.a.d
Human	MODERN SPECIES		USP24 (ENSG00000162402)	PLPP3 (ENSG00000162407)	PRKAA2 (ENSG00000162409)	FYB2 (ENSG00000187889)	C8A (ENSG00000157131)	C8B (ENSG00000021852)	DAB1 (ENSG00000173406)	OMA1 (ENSG00000162600)	TACSTD2 (ENSG00000184292) ##36	MYSM1 (ENSG00000162601)	JUN (ENSG00000177606)	FGGY (ENSG00000172456)	HOOK1 (ENSG00000134709)	CYP2J2 (ENSG00000134716)	C1orf87 (ENSG00000162598)	NFIA (ENSG00000162599) ##22	TM2D1 (ENSG00000162604)	PATJ (ENSG00000132849)	L1TD1 (ENSG00000240563)	KANK4 (ENSG00000132854)	USP1 (ENSG00000162607)	DOCK7 (ENSG00000116641)	ANGPTL3 (ENSG00000132855)	ATG4C (ENSG00000125703)	FOXD3 (ENSG00000187140)	ALG6 (ENSG00000088035)	ITGB3BP (ENSG00000142856)	EFCAB7 (ENSG00000203965)	PGM1 (ENSG00000079739)	ROR1 (ENSG00000185483)	UBE2U (ENSG00000177414)
Pan	ANCESTRAL SPECIES		ENSGT00490000043472	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00910000147158	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000012628.a.a.d
Chimpanzee	MODERN SPECIES		PCSK9 (ENSPTRG00000000783)	USP24 (ENSPTRG00000000784)	PLPP3 (ENSPTRG00000000787)	PRKAA2 (ENSPTRG00000000788)	FYB2 (ENSPTRG00000000790)	C8A (ENSPTRG00000000791)	C8B (ENSPTRG00000000792)	DAB1 (ENSPTRG00000000793)	OMA1 (ENSPTRG00000049936)	TACSTD2 (ENSPTRG00000000795) ##36	MYSM1 (ENSPTRG00000000796)	FGGY (ENSPTRG00000000798)	HOOK1 (ENSPTRG00000000799)	CYP2J2 (ENSPTRG00000000800)	C1H1orf87 (ENSPTRG00000000801)	NFIA (ENSPTRG00000000802) ##22	ENSPTRG00000045390	TM2D1 (ENSPTRG00000000803)	PATJ (ENSPTRG00000000806)	ENSPTRG00000052807	ENSPTRG00000044616	L1TD1 (ENSPTRG00000034387)	KANK4 (ENSPTRG00000000809)	USP1 (ENSPTRG00000000810)	DOCK7 (ENSPTRG00000000811)	ANGPTL3 (ENSPTRG00000000812)	ATG4C (ENSPTRG00000000813)	FOXD3 (ENSPTRG00000030580)	ALG6 (ENSPTRG00000000815)	ITGB3BP (ENSPTRG00000000816)	EFCAB7 (ENSPTRG00000030579)
Bonobo	MODERN SPECIES		PCSK9 (ENSPPAG00000032319)	USP24 (ENSPPAG00000019593)	PLPP3 (ENSPPAG00000043561)	PRKAA2 (ENSPPAG00000043682)	FYB2 (ENSPPAG00000017696)	C8A (ENSPPAG00000031088)	C8B (ENSPPAG00000039369)	DAB1 (ENSPPAG00000031768)	OMA1 (ENSPPAG00000012992)	TACSTD2 (ENSPPAG00000011467) ##36	MYSM1 (ENSPPAG00000036220)	FGGY (ENSPPAG00000030850)	HOOK1 (ENSPPAG00000038359)	CYP2J2 (ENSPPAG00000041228)	C1orf87 (ENSPPAG00000033458)	NFIA (ENSPPAG00000001224) ##22	TM2D1 (ENSPPAG00000029011)	PATJ (ENSPPAG00000039589)	ENSPPAG00000039699	L1TD1 (ENSPPAG00000043606)	KANK4 (ENSPPAG00000009408)	USP1 (ENSPPAG00000028383)	DOCK7 (ENSPPAG00000016435)	ANGPTL3 (ENSPPAG00000030674)	ATG4C (ENSPPAG00000043147)	ALG6 (ENSPPAG00000035533)	ITGB3BP (ENSPPAG00000032358)	EFCAB7 (ENSPPAG00000043777)	PGM1 (ENSPPAG00000037068)	ROR1 (ENSPPAG00000010111)	ENSPPAG00000023862
Orangutan	MODERN SPECIES		USP24 (ENSPPYG00000001305)	PLPP3 (ENSPPYG00000001304)	PRKAA2 (ENSPPYG00000001303)	FYB2 (ENSPPYG00000001302)	C8A (ENSPPYG00000001301)	C8B (ENSPPYG00000001300)	DAB1 (ENSPPYG00000001299)	OMA1 (ENSPPYG00000001298)	TACSTD2 (ENSPPYG00000001297) ##36	MYSM1 (ENSPPYG00000001296)	JUN (ENSPPYG00000001295)	FGGY (ENSPPYG00000001294)	HOOK1 (ENSPPYG00000001293)	CYP2J2 (ENSPPYG00000001292)	C1orf87 (ENSPPYG00000001291)	NFIA (ENSPPYG00000001290) ##22	ENSPPYG00000001288	PATJ (ENSPPYG00000001287)	L1TD1 (ENSPPYG00000001286)	KANK4 (ENSPPYG00000001285)	USP1 (ENSPPYG00000001284)	ANGPTL3 (ENSPPYG00000001283)	DOCK7 (ENSPPYG00000001280)	ATG4C (ENSPPYG00000001279)	FOXD3 (ENSPPYG00000001278)	ALG6 (ENSPPYG00000001277)	ITGB3BP (ENSPPYG00000001276)	EFCAB7 (ENSPPYG00000001275)	PGM1 (ENSPPYG00000029788)	ENSPPYG00000040176	ROR1 (ENSPPYG00000001274)
Gibbon	MODERN SPECIES	20	PLPP3 (ENSNLEG00000031721)	PRKAA2 (ENSNLEG00000014678)	FYB2 (ENSNLEG00000014691)	C8A (ENSNLEG00000014710)	C8B (ENSNLEG00000014723)	DAB1 (ENSNLEG00000014741)	ENSNLEG00000029989	OMA1 (ENSNLEG00000014763)	TACSTD2 (ENSNLEG00000018323) ##36	MYSM1 (ENSNLEG00000014766)	ENSNLEG00000014776	FGGY (ENSNLEG00000014781)	HOOK1 (ENSNLEG00000014800)	CYP2J2 (ENSNLEG00000014820)	C1orf87 (ENSNLEG00000014828)	NFIA (ENSNLEG00000014835) ##22	TM2D1 (ENSNLEG00000014839)	PATJ (ENSNLEG00000014847)	L1TD1 (ENSNLEG00000014904)	KANK4 (ENSNLEG00000014906)	USP1 (ENSNLEG00000014915)	DOCK7 (ENSNLEG00000014928)	ANGPTL3 (ENSNLEG00000015025)	ATG4C (ENSNLEG00000015041)	ALG6 (ENSNLEG00000015063)	ENSNLEG00000015070	EFCAB7 (ENSNLEG00000015076)	PGM1 (ENSNLEG00000015083)	ROR1 (ENSNLEG00000015103)	ENSNLEG00000031572	ENSNLEG00000032734
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00940000164161.b.a.b	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B
Rhinopithecus	ANCESTRAL SPECIES	337			ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136
Golden snub-nosed monkey	MODERN SPECIES	1530														CYP2J2 (ENSRROG00000034996)	C1orf87 (ENSRROG00000040441)	NFIA (ENSRROG00000026343) ##22	TM2D1 (ENSRROG00000035570)	PATJ (ENSRROG00000010773)	ENSRROG00000023749	L1TD1 (ENSRROG00000042567)	KANK4 (ENSRROG00000007321)	USP1 (ENSRROG00000028426)	DOCK7 (ENSRROG00000040277)	ANGPTL3 (ENSRROG00000017394)	ATG4C (ENSRROG00000013654)	ENSRROG00000006458	ALG6 (ENSRROG00000035629)	ITGB3BP (ENSRROG00000042197)	EFCAB7 (ENSRROG00000040009)	PGM1 (ENSRROG00000039585)	ENSRROG00000029309
Black snub-nosed monkey	MODERN SPECIES	569	ENSRBIG00000033721	PLPP3 (ENSRBIG00000037082)	PRKAA2 (ENSRBIG00000042722)	FYB2 (ENSRBIG00000003571)	C8A (ENSRBIG00000044854)	C8B (ENSRBIG00000044858)	DAB1 (ENSRBIG00000043814)	OMA1 (ENSRBIG00000030665)	TACSTD2 (ENSRBIG00000030173) ##36	MYSM1 (ENSRBIG00000036261)	FGGY (ENSRBIG00000028365)	HOOK1 (ENSRBIG00000004303)	CYP2J2 (ENSRBIG00000034286)	C1orf87 (ENSRBIG00000026690)	ENSRBIG00000019391	NFIA (ENSRBIG00000032076) ##22	TM2D1 (ENSRBIG00000032068)	ENSRBIG00000034372	PATJ (ENSRBIG00000043813)	L1TD1 (ENSRBIG00000005782)	ENSRBIG00000035631	USP1 (ENSRBIG00000041920)	ANGPTL3 (ENSRBIG00000033798)	DOCK7 (ENSRBIG00000036983)	ATG4C (ENSRBIG00000027148)	ENSRBIG00000026704	ENSRBIG00000026600	ALG6 (ENSRBIG00000035347)	ITGB3BP (ENSRBIG00000037404)	EFCAB7 (ENSRBIG00000029286)	PGM1 (ENSRBIG00000035757)
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00940000164161.b.a.b	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000153947.B
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000154674.i.b.a	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000012628.a.a.d.d	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000154674.i.b.a	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256
Olive baboon	MODERN SPECIES		FYB2 (ENSPANG00000023473)	C8A (ENSPANG00000021853)	C8B (ENSPANG00000024233)	DAB1 (ENSPANG00000025438)	OMA1 (ENSPANG00000000888)	TACSTD2 (ENSPANG00000020602) ##36	MYSM1 (ENSPANG00000021852)	ENSPANG00000047497	JUN (ENSPANG00000012317)	FGGY (ENSPANG00000019183)	HOOK1 (ENSPANG00000014459)	CYP2J2 (ENSPANG00000004798)	ENSPANG00000043309	C1orf87 (ENSPANG00000016246)	ENSPANG00000039602	NFIA (ENSPANG00000024741) ##22	TM2D1 (ENSPANG00000031405)	ENSPANG00000049463	ENSPANG00000039335	PATJ (ENSPANG00000016676)	ENSPANG00000034918	ENSPANG00000034202	ENSPANG00000044519	ENSPANG00000037323	L1TD1 (ENSPANG00000021627)	ENSPANG00000038690	ENSPANG00000012982	ENSPANG00000034374	ENSPANG00000011286	USP1 (ENSPANG00000024232)	DOCK7 (ENSPANG00000005717)
Cercopithecinae_d	ANCESTRAL SPECIES	19	ENSGT00940000159474	ENSGT00940000154674.i.b.a	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00390000012628.b	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B
Sooty mangabey	MODERN SPECIES	238	PLPP3 (ENSCATG00000004547)	PRKAA2 (ENSCATG00000040892)	FYB2 (ENSCATG00000030733)	C8A (ENSCATG00000030932)	C8B (ENSCATG00000032382)	DAB1 (ENSCATG00000030344)	OMA1 (ENSCATG00000039318)	TACSTD2 (ENSCATG00000018352) ##36	MYSM1 (ENSCATG00000021340)	ENSCATG00000041119	FGGY (ENSCATG00000044444)	HOOK1 (ENSCATG00000041461)	CYP2J2 (ENSCATG00000040512)	C1orf87 (ENSCATG00000044396)	ENSCATG00000040049	NFIA (ENSCATG00000012748) ##22	TM2D1 (ENSCATG00000041406)	ENSCATG00000037296	PATJ (ENSCATG00000039233)	L1TD1 (ENSCATG00000038295)	KANK4 (ENSCATG00000036371)	ENSCATG00000019757	USP1 (ENSCATG00000015135)	ANGPTL3 (ENSCATG00000012804)	DOCK7 (ENSCATG00000040198)	ATG4C (ENSCATG00000042641)	FOXD3 (ENSCATG00000018412)	ALG6 (ENSCATG00000042255)	ITGB3BP (ENSCATG00000041208)	EFCAB7 (ENSCATG00000034513)	PGM1 (ENSCATG00000043055)
Drill	MODERN SPECIES	419	PLPP3 (ENSMLEG00000028691)	PRKAA2 (ENSMLEG00000015881)	FYB2 (ENSMLEG00000035834)	C8A (ENSMLEG00000034403)	C8B (ENSMLEG00000032382)	DAB1 (ENSMLEG00000033725)	OMA1 (ENSMLEG00000039844)	TACSTD2 (ENSMLEG00000021805) ##36	MYSM1 (ENSMLEG00000042013)	FGGY (ENSMLEG00000028599)	ENSMLEG00000036765	HOOK1 (ENSMLEG00000039445)	ENSMLEG00000007265	CYP2J2 (ENSMLEG00000028848)	C1orf87 (ENSMLEG00000040198)	NFIA (ENSMLEG00000042873) ##22
Macaca	ANCESTRAL SPECIES		ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00390000012628.a.a.d.d	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b
Macaca_a	ANCESTRAL SPECIES		ENSGT00490000043472	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00940000164709.a.b.b.a.a.b.a.a.a.a.b.a.a.a.b	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b
Rhesus	MODERN SPECIES		C8A (ENSMMUG00000022992)	C8B (ENSMMUG00000022993)	ENSMMUG00000059749	ENSMMUG00000050121	DAB1 (ENSMMUG00000022995)	ENSMMUG00000060500	ENSMMUG00000049840	OMA1 (ENSMMUG00000022762)	MYSM1 (ENSMMUG00000011800)	JUN (ENSMMUG00000059326)	FGGY (ENSMMUG00000002387)	HOOK1 (ENSMMUG00000012850)	CYP2J2 (ENSMMUG00000015972)	C1H1orf87 (ENSMMUG00000006756)	ENSMMUG00000052202	NFIA (ENSMMUG00000013840) ##22	TM2D1 (ENSMMUG00000010931)	PATJ (ENSMMUG00000003113)	ENSMMUG00000064743	L1TD1 (ENSMMUG00000006485)	KANK4 (ENSMMUG00000010351)	USP1 (ENSMMUG00000002339)	ANGPTL3 (ENSMMUG00000046449)	DOCK7 (ENSMMUG00000002340)	ENSMMUG00000050619	ENSMMUG00000056324	ATG4C (ENSMMUG00000000386)	ENSMMUG00000058152	FOXD3 (ENSMMUG00000022350)	ALG6 (ENSMMUG00000020046)	ITGB3BP (ENSMMUG00000020047)
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000058387	PLPP3 (ENSMFAG00000026668)	PRKAA2 (ENSMFAG00000031683)	FYB2 (ENSMFAG00000003618)	C8A (ENSMFAG00000036139)	C8B (ENSMFAG00000037279)	ENSMFAG00000062071	DAB1 (ENSMFAG00000044031)	OMA1 (ENSMFAG00000033064)	MYSM1 (ENSMFAG00000002666)	JUN (ENSMFAG00000050244)	FGGY (ENSMFAG00000037904)	HOOK1 (ENSMFAG00000000847)	CYP2J2 (ENSMFAG00000003319)	C1orf87 (ENSMFAG00000044638)	NFIA (ENSMFAG00000045828) ##22	TM2D1 (ENSMFAG00000040223)	ENSMFAG00000034621	PATJ (ENSMFAG00000044826)	L1TD1 (ENSMFAG00000031887)	KANK4 (ENSMFAG00000032159)	USP1 (ENSMFAG00000043530)	ANGPTL3 (ENSMFAG00000007083)	DOCK7 (ENSMFAG00000032390)	ENSMFAG00000058446	ATG4C (ENSMFAG00000038279)	FOXD3 (ENSMFAG00000052856)	ALG6 (ENSMFAG00000041396)	ENSMFAG00000040062	EFCAB7 (ENSMFAG00000001765)	ENSMFAG00000022559
Pig-tailed macaque	MODERN SPECIES	217	PLPP3 (ENSMNEG00000039476)	PRKAA2 (ENSMNEG00000022231)	FYB2 (ENSMNEG00000037427)	C8A (ENSMNEG00000036182)	C8B (ENSMNEG00000040213)	DAB1 (ENSMNEG00000036473)	OMA1 (ENSMNEG00000043276)	TACSTD2 (ENSMNEG00000027286) ##36	MYSM1 (ENSMNEG00000033542)	FGGY (ENSMNEG00000028693)	ENSMNEG00000033506	HOOK1 (ENSMNEG00000005935)	CYP2J2 (ENSMNEG00000029436)	C1orf87 (ENSMNEG00000039821)	ENSMNEG00000029281	NFIA (ENSMNEG00000033257) ##22	TM2D1 (ENSMNEG00000034247)	PATJ (ENSMNEG00000022006)	ENSMNEG00000030822	L1TD1 (ENSMNEG00000030098)	KANK4 (ENSMNEG00000032440)	USP1 (ENSMNEG00000033298)	DOCK7 (ENSMNEG00000032463)	ANGPTL3 (ENSMNEG00000031218)	ATG4C (ENSMNEG00000038662)	FOXD3 (ENSMNEG00000021981)	ALG6 (ENSMNEG00000004099)	ITGB3BP (ENSMNEG00000029344)	EFCAB7 (ENSMNEG00000042983)	PGM1 (ENSMNEG00000039633)	ROR1 (ENSMNEG00000009711)
Vervet Monkey	DUPLICATION
Vervet Monkey	MODERN SPECIES	12	C8A (ENSCSAG00000001321)	C8B (ENSCSAG00000001322)	DAB1 (ENSCSAG00000001323)	ENSCSAG00000000148	OMA1 (ENSCSAG00000001324)	TACSTD2 (ENSCSAG00000001325) ##36	MYSM1 (ENSCSAG00000001326)	JUN (ENSCSAG00000000149)	ENSCSAG00000001327	FGGY (ENSCSAG00000001328)	ENSCSAG00000001329	HOOK1 (ENSCSAG00000001330)	CYP2J2 (ENSCSAG00000001331)	C1orf87 (ENSCSAG00000001332)	ENSCSAG00000001333 ##22	ENSCSAG00000001334 ##22	TM2D1 (ENSCSAG00000001335)	PATJ (ENSCSAG00000001336)	L1TD1 (ENSCSAG00000001337)	KANK4 (ENSCSAG00000001338)	USP1 (ENSCSAG00000001339)	ANGPTL3 (ENSCSAG00000001340)	DOCK7 (ENSCSAG00000001341)	ATG4C (ENSCSAG00000001342)	FOXD3 (ENSCSAG00000000150)	ALG6 (ENSCSAG00000001343)	ITGB3BP (ENSCSAG00000001344)	EFCAB7 (ENSCSAG00000001345)	PGM1 (ENSCSAG00000001346)	ROR1 (ENSCSAG00000001347)	UBE2U (ENSCSAG00000001348)
Vervet Monkey	MODERN SPECIES	12	FYB2 (ENSCSAG00000001320)	C8A (ENSCSAG00000001321)	C8B (ENSCSAG00000001322)	DAB1 (ENSCSAG00000001323)	ENSCSAG00000000148	OMA1 (ENSCSAG00000001324)	TACSTD2 (ENSCSAG00000001325) ##36	MYSM1 (ENSCSAG00000001326)	JUN (ENSCSAG00000000149)	ENSCSAG00000001327	FGGY (ENSCSAG00000001328)	ENSCSAG00000001329	HOOK1 (ENSCSAG00000001330)	CYP2J2 (ENSCSAG00000001331)	C1orf87 (ENSCSAG00000001332)	ENSCSAG00000001333 ##22	ENSCSAG00000001334 ##22	TM2D1 (ENSCSAG00000001335)	PATJ (ENSCSAG00000001336)	L1TD1 (ENSCSAG00000001337)	KANK4 (ENSCSAG00000001338)	USP1 (ENSCSAG00000001339)	ANGPTL3 (ENSCSAG00000001340)	DOCK7 (ENSCSAG00000001341)	ATG4C (ENSCSAG00000001342)	FOXD3 (ENSCSAG00000000150)	ALG6 (ENSCSAG00000001343)	ITGB3BP (ENSCSAG00000001344)	EFCAB7 (ENSCSAG00000001345)	PGM1 (ENSCSAG00000001346)	ROR1 (ENSCSAG00000001347)
Atlantogenata	ANCESTRAL SPECIES	11	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256
Xenarthra	ANCESTRAL SPECIES	1060																ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT01050000244818	ENSGT00940000158468
Sloth	MODERN SPECIES	4851																NFIA (ENSCHOG00000007973) ##22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	3607																ENSDNOG00000049679 ##22	TM2D1 (ENSDNOG00000040148)	PATJ (ENSDNOG00000016550)	ENSDNOG00000039645	KANK4 (ENSDNOG00000046189)
Armadillo	MODERN SPECIES	548															ENSDNOG00000035552	ENSDNOG00000002190 ##22	ENSDNOG00000046925	ENSDNOG00000048254	ZNF385D (ENSDNOG00000010237)	ENSDNOG00000045538
Afrotheria	ANCESTRAL SPECIES	21	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000004336	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568
Tenrec	MODERN SPECIES	5285																NFIA (ENSETEG00000017068) ##22
Afrotheria_a	ANCESTRAL SPECIES	20	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000018245.d ##36	ENSGT00940000157721	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00940000159251	ENSGT00940000155417	ENSGT00390000008678	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000156746	ENSGT00940000155661	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568	ENSGT00940000158648
Elephant	DUPLICATION
Elephant	MODERN SPECIES	145	PRKAA2 (ENSLAFG00000012783)	FYB2 (ENSLAFG00000006946)	C8A (ENSLAFG00000003294)	C8B (ENSLAFG00000003299)	DAB1 (ENSLAFG00000012261)	OMA1 (ENSLAFG00000009784)	ENSLAFG00000030000 ##36	MYSM1 (ENSLAFG00000003849)	JUN (ENSLAFG00000012900)	FGGY (ENSLAFG00000013080)	HOOK1 (ENSLAFG00000013082)	ENSLAFG00000013089	ENSLAFG00000011542	ENSLAFG00000022626	C1orf87 (ENSLAFG00000012275)	ENSLAFG00000025943 ##22	ENSLAFG00000031230 ##22	TM2D1 (ENSLAFG00000013979)	PATJ (ENSLAFG00000007961)	KANK4 (ENSLAFG00000007974)	USP1 (ENSLAFG00000023157)	ANGPTL3 (ENSLAFG00000002419)	DOCK7 (ENSLAFG00000002410)	ATG4C (ENSLAFG00000009126)	FOXD3 (ENSLAFG00000003874)	ALG6 (ENSLAFG00000002400)	EFCAB7 (ENSLAFG00000004814)	PGM1 (ENSLAFG00000004820)	ROR1 (ENSLAFG00000012631)	ENSLAFG00000012636	CACHD1 (ENSLAFG00000009161)
Elephant	MODERN SPECIES	145	FYB2 (ENSLAFG00000006946)	C8A (ENSLAFG00000003294)	C8B (ENSLAFG00000003299)	DAB1 (ENSLAFG00000012261)	OMA1 (ENSLAFG00000009784)	ENSLAFG00000030000 ##36	MYSM1 (ENSLAFG00000003849)	JUN (ENSLAFG00000012900)	FGGY (ENSLAFG00000013080)	HOOK1 (ENSLAFG00000013082)	ENSLAFG00000013089	ENSLAFG00000011542	ENSLAFG00000022626	C1orf87 (ENSLAFG00000012275)	ENSLAFG00000025943 ##22	ENSLAFG00000031230 ##22	TM2D1 (ENSLAFG00000013979)	PATJ (ENSLAFG00000007961)	KANK4 (ENSLAFG00000007974)	USP1 (ENSLAFG00000023157)	ANGPTL3 (ENSLAFG00000002419)	DOCK7 (ENSLAFG00000002410)	ATG4C (ENSLAFG00000009126)	FOXD3 (ENSLAFG00000003874)	ALG6 (ENSLAFG00000002400)	EFCAB7 (ENSLAFG00000004814)	PGM1 (ENSLAFG00000004820)	ROR1 (ENSLAFG00000012631)	ENSLAFG00000012636	CACHD1 (ENSLAFG00000009161)	RAVER2 (ENSLAFG00000012508)
Hyrax	MODERN SPECIES	4485																NFIA (ENSPCAG00000012769) ##22
Anura	ANCESTRAL SPECIES	17	ENSGT00940000156945	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00940000157721	ENSGT00390000007027	ENSGT00410000029447	ENSGT00940000165489	ENSGT00940000162061	ENSGT01000000214434.F	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00550000074827	ENSGT00940000171673	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a ##22	ENSGT00940000157668	ENSGT00940000155136	ENSGT00940000158468	ENSGT00910000144243	ENSGT00940000155661	ENSGT00940000156746	ENSGT00530000063000.a.a.a	ENSGT00940000161645.b	ENSGT00940000153733.B	ENSGT00390000015466	ENSGT00940000155542.b	ENSGT00940000153947.B	ENSGT00940000162256	ENSGT00940000157568	ENSGT00940000158648
Leishan spiny toad	MODERN SPECIES	11	OMA1 (ENSLLEG00000028542)	ENSLLEG00000028604	MYSM1 (ENSLLEG00000028645)	ENSLLEG00000028770	ENSLLEG00000028775	ENSLLEG00000028782	ENSLLEG00000028838	JUN (ENSLLEG00000029160)	FGGY (ENSLLEG00000029181)	ENSLLEG00000029290	ENSLLEG00000029299	HOOK1 (ENSLLEG00000029325)	ENSLLEG00000029406	PSMA4 (ENSLLEG00000029712)	ENSLLEG00000029771	NFIA (ENSLLEG00000029817) ##22	ENSLLEG00000030000	ENSLLEG00000030035	TM2D1 (ENSLLEG00000030041)	ENSLLEG00000030084	ENSLLEG00000030261	ENSLLEG00000030279	GLIS1 (ENSLLEG00000030291)	ENSLLEG00000030303	NDC1 (ENSLLEG00000030314)	YIPF1 (ENSLLEG00000030350)	LRRC42 (ENSLLEG00000030366)	ENSLLEG00000030389	ENSLLEG00000030399	LDLRAD1 (ENSLLEG00000030404)	TMEM59 (ENSLLEG00000030417)
Frog	MODERN SPECIES	4	prkaa2 (ENSXETG00000011138)	fyb2 (ENSXETG00000045125)	c8a (ENSXETG00000011135)	c8b (ENSXETG00000011133)	dab1 (ENSXETG00000011130)	mysm1 (ENSXETG00000011126)	oma1 (ENSXETG00000040389)	ENSXETG00000036156	jun (ENSXETG00000046489)	ENSXETG00000044506	fggy (ENSXETG00000008887)	XB5864909 [provisional:rnf170] (ENSXETG00000032865)	hook1 (ENSXETG00000008880)	psma4 (ENSXETG00000008877)	frem1l (ENSXETG00000008875)	nfia (ENSXETG00000008871) ##22	tm2d1 (ENSXETG00000036959)	patj (ENSXETG00000030379)	ENSXETG00000037245	angptl3 (ENSXETG00000010849)	dock7 (ENSXETG00000010841)	atg4c (ENSXETG00000010838)	ENSXETG00000042244	foxd3 (ENSXETG00000010836)	alg6 (ENSXETG00000010835)	efcab7 (ENSXETG00000010833)	ror1 (ENSXETG00000034676)	ube2u (ENSXETG00000035592)	ENSXETG00000041559	cachd1 (ENSXETG00000020410)	raver2 (ENSXETG00000020406)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.a ##22
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	1084																ENSEBUG00000013883 ##22	ENSEBUG00000000338	ENSEBUG00000012520	ENSEBUG00000013460	ENSEBUG00000009145	SMIM7 (ENSEBUG00000014286)	ENSEBUG00000009364	cmpk (ENSEBUG00000000986)	ENSEBUG00000007383
Hagfish	MODERN SPECIES	729	ENSEBUG00000010389	ENSEBUG00000013090	ndufb7 (ENSEBUG00000004190)	abcd3a (ENSEBUG00000002093)	ENSEBUG00000004311	cactin (ENSEBUG00000013931) ##32	ENSEBUG00000013006	ENSEBUG00000001298	ENSEBUG00000007162	ENSEBUG00000015894	dhps (ENSEBUG00000011320)	ENSEBUG00000003880	ENSEBUG00000001017	ENSEBUG00000002000	ENSEBUG00000003023	ENSEBUG00000003344 ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b ##22
Lamprey	MODERN SPECIES	4505																nfixb (ENSPMAG00000009308) ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b ##22
Euteleostomi	DUPLICATION
Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22
Clupeocephala	ANCESTRAL SPECIES	5	ENSGT00940000159311.d.a.a	ENSGT00940000154912.u.b	ENSGT00940000165172.a	ENSGT00530000064086	ENSGT00940000155632.o	ENSGT00550000075117.m.b	ENSGT00950000183099	ENSGT00940000155858.e	ENSGT00390000012267	ENSGT00940000160152	ENSGT00940000161195.a.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000161195.a.b	ENSGT00940000155828	ENSGT00940000154277.b.b.b	ENSGT00950000183144.B	ENSGT00940000157700.d	ENSGT00530000063000.a.a.b.i	ENSGT00940000156887.a	ENSGT00940000154819.a.b.c.a	ENSGT00390000005605	ENSGT00390000005584	ENSGT01050000244887.A.a.a.a.j	ENSGT01050000244887.A.a.a.a.i
Euteleosteomorpha	ANCESTRAL SPECIES	136	ENSGT00940000158178.b.b	ENSGT01030000234857	ENSGT00940000153116.C.b	ENSGT00940000165438.a.b	ENSGT00940000164623.A	ENSGT00940000164108.a.b	ENSGT00940000163957.e.b	ENSGT00990000204498	ENSGT00990000204330	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b
Acanthomorphata	ANCESTRAL SPECIES	40	ENSGT00940000156498.g.b	ENSGT00390000010581	ENSGT00940000153469.a.a.l	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00980000203447	ENSGT00440000033742.a.b.c	ENSGT00940000166223.b.a	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00390000010581	ENSGT00940000153469.a.a.l	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00980000203447	ENSGT00440000033742.a.b.c	ENSGT00940000154739.A	ENSGT00940000166223.b.a	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00390000010581	ENSGT00940000153469.a.a.l	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00980000203447	ENSGT00440000033742.a.b.c	ENSGT00940000154739.A	ENSGT00940000166223.b.a	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00980000203447	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Ovalentaria	ANCESTRAL SPECIES		ENSGT00980000203447	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000154739.A	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000154739.A	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Aplocheiloidei	ANCESTRAL SPECIES	32	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000154739.A	ENSGT00940000170963	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b
Mangrove rivulus	MODERN SPECIES	138						ENSKMAG00000018814	ENSKMAG00000018867	ENSKMAG00000018880	ENSKMAG00000018893	ENSKMAG00000018914	elof1 (ENSKMAG00000018948)	pld6 (ENSKMAG00000018960)	ENSKMAG00000018973	tspan34 (ENSKMAG00000018993)	dand5 (ENSKMAG00000019010)	NFIX (ENSKMAG00000019092) ##22	rnf11a (ENSKMAG00000019233)	ENSKMAG00000019249	ENSKMAG00000019262	ENSKMAG00000019283	ENSKMAG00000019305	ENSKMAG00000019315	ENSKMAG00000019325	fdx2 (ENSKMAG00000019336)	s1pr5b (ENSKMAG00000019347)	keap1b (ENSKMAG00000019360)	ENSKMAG00000019395	CDKN2D (ENSKMAG00000019404)	ap1m2 (ENSKMAG00000019421)	ENSKMAG00000019458	SMARCA4 (ENSKMAG00000019518)
Turquoise killifish	MODERN SPECIES	1617	suz12b (ENSNFUG00015013112)	utp6 (ENSNFUG00015012375)	rab11fip4b (ENSNFUG00015012330)	ENSNFUG00015012327	ENSNFUG00015012322	ENSNFUG00015012318	ENSNFUG00015012314	ENSNFUG00015012309	PLPPR2 (ENSNFUG00015012280)	elof1 (ENSNFUG00015012269)	pld6 (ENSNFUG00015012265)	RAB3D (ENSNFUG00015012261)	Nfu_g_1_013648 (ENSNFUG00015012252)	ENSNFUG00015012243	ENSNFUG00015012241	NFIX (ENSNFUG00015012171) ##22	nags (ENSNFUG00015012116)	ENSNFUG00015012113	RNF11A (ENSNFUG00015012110)	HMOX1 (ENSNFUG00015012103)	ENSNFUG00015012097	CABZ01066695.1 (ENSNFUG00015012090)	ENSNFUG00015012087	fdx2 (ENSNFUG00015012082)	SPHK1 (ENSNFUG00015011894)	ENSNFUG00015011886	CYGB (ENSNFUG00015011879)	keap1b (ENSNFUG00015011864)	ENSNFUG00015011853	aanat1 (ENSNFUG00015011841)	RHBDF2 (ENSNFUG00015011754)
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000154739.A	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00530000063690.a.a	ENSGT00940000165977	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000154739.A	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Poecilia	ANCESTRAL SPECIES	6	ENSGT00530000063690.a.a	ENSGT00940000165977	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000154739.A	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.d	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Guppy	MODERN SPECIES	439	slc34a2a (ENSPREG00000013034)	ENSPREG00000013070	ENSPREG00000013092	utp6 (ENSPREG00000013108)	rab11fip4b (ENSPREG00000013170)	ENSPREG00000013201	ENSPREG00000013211	ENSPREG00000013226	ENSPREG00000013236	PLPPR2 (ENSPREG00000013258)	elof1 (ENSPREG00000013288)	pld6 (ENSPREG00000013297)	RAB3D (ENSPREG00000013308)	tspan34 (ENSPREG00000013321)	dand5 (ENSPREG00000013337)	NFIX (ENSPREG00000013386) ##22	rnf11a (ENSPREG00000013482)	HMOX1 (ENSPREG00000013545)	ENSPREG00000013750	ENSPREG00000013765	ENSPREG00000013771	ENSPREG00000013775	ENSPREG00000013782	fdx2 (ENSPREG00000013790)	s1pr5b (ENSPREG00000013844)	keap1b (ENSPREG00000013858)	ENSPREG00000013872	CDKN2D (ENSPREG00000013882)	ap1m2 (ENSPREG00000013898)	ENSPREG00000014073	SMARCA4 (ENSPREG00000014823)
NAME_6	ANCESTRAL SPECIES	47	ENSGT00530000063690.a.a	ENSGT00940000165977	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000154739.A	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.d	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Sailfin molly	MODERN SPECIES	4	ENSPLAG00000017810	ENSPLAG00000017817	utp6 (ENSPLAG00000017825)	rab11fip4b (ENSPLAG00000017864)	ENSPLAG00000017884	ENSPLAG00000017891	ENSPLAG00000017898	ENSPLAG00000017904	ENSPLAG00000017957	PLPPR2 (ENSPLAG00000018007)	elof1 (ENSPLAG00000018024)	pld6 (ENSPLAG00000018026)	RAB3D (ENSPLAG00000018052)	tspan34 (ENSPLAG00000018292)	dand5 (ENSPLAG00000018314)	NFIX (ENSPLAG00000018337) ##22	rnf11a (ENSPLAG00000018356)	HMOX1 (ENSPLAG00000018364)	ENSPLAG00000018376	ENSPLAG00000018384	ENSPLAG00000018392	ENSPLAG00000018396	ENSPLAG00000018403	fdx2 (ENSPLAG00000018407)	s1pr5b (ENSPLAG00000018413)	keap1b (ENSPLAG00000018426)	ENSPLAG00000018432	CDKN2D (ENSPLAG00000018442)	ap1m2 (ENSPLAG00000018476)	ENSPLAG00000018526	SMARCA4 (ENSPLAG00000018616)
Amazon molly	MODERN SPECIES	295	slc34a2a (ENSPFOG00000014065)	ENSPFOG00000020144	ENSPFOG00000014019	utp6 (ENSPFOG00000013918)	rab11fip4b (ENSPFOG00000013798)	ENSPFOG00000022254	ENSPFOG00000023940	ENSPFOG00000020143	ENSPFOG00000013777	PLPPR2 (ENSPFOG00000013696)	elof1 (ENSPFOG00000023035)	pld6 (ENSPFOG00000013689)	RAB3D (ENSPFOG00000013657)	tspan34 (ENSPFOG00000013561)	dand5 (ENSPFOG00000013550)	NFIX (ENSPFOG00000013453) ##22	rnf11a (ENSPFOG00000013436)	HMOX1 (ENSPFOG00000013418)	ENSPFOG00000022531	ENSPFOG00000013403	ENSPFOG00000013394	ENSPFOG00000013392	ENSPFOG00000023655	fdx2 (ENSPFOG00000013381)	s1pr5b (ENSPFOG00000020141)	keap1b (ENSPFOG00000013318)	ENSPFOG00000013303	CDKN2D (ENSPFOG00000013301)	ap1m2 (ENSPFOG00000023907)	ENSPFOG00000013091	SMARCA4 (ENSPFOG00000012930)
Platyfish	MODERN SPECIES	19	slc34a2a (ENSXMAG00000017450)	ENSXMAG00000025583	ENSXMAG00000017443	utp6 (ENSXMAG00000017414)	rab11fip4b (ENSXMAG00000017397)	ENSXMAG00000029128	ENSXMAG00000029813	ENSXMAG00000024114	ENSXMAG00000021764	PLPPR2 (ENSXMAG00000017379)	elof1 (ENSXMAG00000023395)	pld6 (ENSXMAG00000017375)	ENSXMAG00000017368	tspan34 (ENSXMAG00000024059)	dand5 (ENSXMAG00000017343)	NFIX (ENSXMAG00000007238) ##22	rnf11a (ENSXMAG00000022184)	HMOX1 (ENSXMAG00000007220)	ENSXMAG00000025662	ENSXMAG00000025089	ENSXMAG00000027376	ENSXMAG00000026103	ENSXMAG00000019816	ENSXMAG00000020994	fdx2 (ENSXMAG00000005511)	s1pr5b (ENSXMAG00000019815)	keap1b (ENSXMAG00000021448)	ENSXMAG00000007179	CDKN2D (ENSXMAG00000022409)	ap1m2 (ENSXMAG00000007151)	ENSXMAG00000007105
NAME_4	ANCESTRAL SPECIES	73	ENSGT00930000151058	ENSGT00950000183177.a.b.b	ENSGT00530000063690.a.a	ENSGT00940000165977	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000158145.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a.d	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.d	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Sheepshead minnow	MODERN SPECIES	674											ENSCVAG00000003694	ENSCVAG00000003702	RAB3D (ENSCVAG00000003713)	tspan34 (ENSCVAG00000003720)	dand5 (ENSCVAG00000003728)	NFIX (ENSCVAG00000003802) ##22	rnf11a (ENSCVAG00000003814)	HMOX1 (ENSCVAG00000003821)	ENSCVAG00000003832	ENSCVAG00000003825	ENSCVAG00000003838	ENSCVAG00000003846	ENSCVAG00000003854	zglp1 (ENSCVAG00000003889)	fdx2 (ENSCVAG00000003897)
Mummichog	MODERN SPECIES	2390	ENSFHEG00000010412	ENSFHEG00000010385	utp6 (ENSFHEG00000010373)	rab11fip4b (ENSFHEG00000010361)	ENSFHEG00000010321	ENSFHEG00000010309	ENSFHEG00000010293	ENSFHEG00000010282	ENSFHEG00000010265	ENSFHEG00000000234	ENSFHEG00000010239	elof1 (ENSFHEG00000010192)	pld6 (ENSFHEG00000010180)	ENSFHEG00000010176	tspan34 (ENSFHEG00000010162)	NFIX (ENSFHEG00000010119) ##22	rnf11a (ENSFHEG00000009970)	HMOX1 (ENSFHEG00000009949)	ENSFHEG00000009898	ENSFHEG00000009871
Oryzias	ANCESTRAL SPECIES	15	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000154739.A	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b
Oryzias_b	ANCESTRAL SPECIES	29	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000154739.A	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000178623	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b	ENSGT00530000063000.a.a.b.j
Indian medaka	MODERN SPECIES	21	ENSOMEG00000017593	tefm (ENSOMEG00000017577)	suz12b (ENSOMEG00000017539)	utp6 (ENSOMEG00000017487)	rab11fip4b (ENSOMEG00000017420)	ENSOMEG00000017390	ENSOMEG00000000429	ENSOMEG00000000737	ENSOMEG00000017349	ENSOMEG00000017303	elof1 (ENSOMEG00000017257)	pld6 (ENSOMEG00000017243)	RAB3D (ENSOMEG00000017217)	tspan34 (ENSOMEG00000017196)	dand5 (ENSOMEG00000017180)	NFIX (ENSOMEG00000017131) ##22	rnf11a (ENSOMEG00000016928)	HMOX1 (ENSOMEG00000016914)	ENSOMEG00000016899	ENSOMEG00000016869	keap1b (ENSOMEG00000016855)	ENSOMEG00000016816	ENSOMEG00000016799	fdx2 (ENSOMEG00000000776)	ENSOMEG00000016757	CDKN2D (ENSOMEG00000016735)	ap1m2 (ENSOMEG00000016714)	ENSOMEG00000000419	SMARCA4 (ENSOMEG00000016626)	atg4da (ENSOMEG00000016515)	MAST1 (ENSOMEG00000000412)
Javanese ricefish	MODERN SPECIES		suz12b (ENSOJAG00000022167)	utp6 (ENSOJAG00000022106)	rab11fip4b (ENSOJAG00000022062)	ENSOJAG00000022052	ENSOJAG00000022047	ENSOJAG00000022034	ENSOJAG00000022025	ENSOJAG00000022022	ENSOJAG00000021989	ENSOJAG00000021984	elof1 (ENSOJAG00000021972)	pld6 (ENSOJAG00000021963)	RAB3D (ENSOJAG00000021948)	tspan34 (ENSOJAG00000021920)	dand5 (ENSOJAG00000021902)	NFIX (ENSOJAG00000021867) ##22	rnf11a (ENSOJAG00000021842)	HMOX1 (ENSOJAG00000021814)	ENSOJAG00000021807	ENSOJAG00000021805	ENSOJAG00000021797	ENSOJAG00000021795	fdx2 (ENSOJAG00000021790)	s1pr5b (ENSOJAG00000021789)	keap1b (ENSOJAG00000021777)	ENSOJAG00000021769	CDKN2D (ENSOJAG00000021763)	ap1m2 (ENSOJAG00000021653)	ENSOJAG00000020541	atg4da (ENSOJAG00000020110)	MAST1 (ENSOJAG00000018779)
Oryzias_a	ANCESTRAL SPECIES	23	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b
Japanese Medaka HdrR	MODERN SPECIES		atad5b (ENSORLG00000024852)	suz12b (ENSORLG00000003511)	rab11fip4b (ENSORLG00000003560)	ENSORLG00000021969	ENSORLG00000003566	ENSORLG00000023623	ENSORLG00000023594	ENSORLG00000023503	ENSORLG00000028826	ENSORLG00000003578	ENSORLG00000003588	pld6 (ENSORLG00000023663)	ENSORLG00000003625	tspan34 (ENSORLG00000003680)	dand5 (ENSORLG00000003690)	NFIX (ENSORLG00000003734) ##22	rnf11a (ENSORLG00000022986)	ENSORLG00000003753	ENSORLG00000028289	ENSORLG00000003769	ENSORLG00000003776	ENSORLG00000003779	ENSORLG00000024901	fdx2 (ENSORLG00000029397)	s1pr5b (ENSORLG00000003793)	keap1b (ENSORLG00000003823)	ENSORLG00000027541	ENSORLG00000003831	CDKN2D (ENSORLG00000003842)	ap1m2 (ENSORLG00000003846)	ENSORLG00000003886
Chinese medaka	MODERN SPECIES	272	rhbdl3 (ENSOSIG00000007547)	rhot1b (ENSOSIG00000000538)	ENSOSIG00000000466	tefm (ENSOSIG00000000463)	suz12b (ENSOSIG00000000426)	utp6 (ENSOSIG00000000379)	rab11fip4b (ENSOSIG00000000285)	ENSOSIG00000000270	ENSOSIG00000000264	ENSOSIG00000000260	elof1 (ENSOSIG00000000250)	pld6 (ENSOSIG00000000247)	ENSOSIG00000000243	tspan34 (ENSOSIG00000000238)	dand5 (ENSOSIG00000000234)	NFIX (ENSOSIG00000000182) ##22	rnf11a (ENSOSIG00000000109)	HMOX1 (ENSOSIG00000000100)	ENSOSIG00000000088	ENSOSIG00000022870	ENSOSIG00000022869	ENSOSIG00000022867	ENSOSIG00000022863	ENSOSIG00000022860	fdx2 (ENSOSIG00000022858)	s1pr5b (ENSOSIG00000022856)	keap1b (ENSOSIG00000022855)	ENSOSIG00000022853	ENSOSIG00000022851	CDKN2D (ENSOSIG00000022850)	AP1M2 (ENSOSIG00000022846)
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00980000203447	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.d	ENSGT00940000181262	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00980000203447	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.c.a	ENSGT00940000154819.a.b.c.b.c.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d.f.a	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.c.a.a	ENSGT00940000154819.a.b.c.b.c.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d.f.a	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.c.a.a	ENSGT00940000154819.a.b.c.b.c.b
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d.f.b	ENSGT00950000182944.A.b.d.f.a	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.c.a.a
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d.f.b	ENSGT00950000182944.A.b.d.f.a	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.c.a.a
P. nyererei	MODERN SPECIES	529	tefm (ENSPNYG00000002395)	ENSPNYG00000002364	suz12b (ENSPNYG00000002302)	utp6 (ENSPNYG00000002290)	rab11fip4b (ENSPNYG00000002204)	ENSPNYG00000002184	ENSPNYG00000002177	ENSPNYG00000002166	ENSPNYG00000002142	ENSPNYG00000002111	ENSPNYG00000002048	ENSPNYG00000002017	RAB3D (ENSPNYG00000002000)	tspan34 (ENSPNYG00000001967)	dand5 (ENSPNYG00000001954)	NFIX (ENSPNYG00000001891) ##22	rnf11a (ENSPNYG00000001848)	HMOX1 (ENSPNYG00000001827)	ENSPNYG00000001812	ENSPNYG00000001791
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b.a ##22	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d.f.b	ENSGT00950000182944.A.b.d.e	ENSGT00950000182944.A.b.d.f.a	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089
Eastern happy	MODERN SPECIES	18	suz12b (ENSACLG00000006709)	utp6 (ENSACLG00000006728)	rab11fip4b (ENSACLG00000007171)	ENSACLG00000007188	ENSACLG00000007202	ENSACLG00000007210	ENSACLG00000007213	ENSACLG00000007220	ENSACLG00000007225	PLPPR2 (ENSACLG00000007519)	elof1 (ENSACLG00000007539)	pld6 (ENSACLG00000007544)	RAB3D (ENSACLG00000007553)	tspan34 (ENSACLG00000007580)	dand5 (ENSACLG00000007596)	NFIX (ENSACLG00000007600) ##22	rnf11a (ENSACLG00000007714)	HMOX1 (ENSACLG00000007729)	ENSACLG00000007737	ENSACLG00000007748	NEU3 (ENSACLG00000007753)	NEU3 (ENSACLG00000007762)	ENSACLG00000007765	ENSACLG00000007772	ENSACLG00000007782	fdx2 (ENSACLG00000007805)	s1pr5b (ENSACLG00000007818)	keap1b (ENSACLG00000007822)	ENSACLG00000007845	CDKN2D (ENSACLG00000007877)	ap1m2 (ENSACLG00000007855)
Burton s mouthbrooder	MODERN SPECIES	473	utp6 (ENSHBUG00000018668)	rab11fip4b (ENSHBUG00000018745)	ENSHBUG00000018772	ENSHBUG00000018785	ENSHBUG00000018816	ENSHBUG00000000864	ENSHBUG00000018838	ENSHBUG00000018848	ENSHBUG00000018866	ENSHBUG00000018878	elof1 (ENSHBUG00000018901)	pld6 (ENSHBUG00000018910)	RAB3D (ENSHBUG00000018925)	tspan34 (ENSHBUG00000018943)	dand5 (ENSHBUG00000018956)	NFIX (ENSHBUG00000019159) ##22	rnf11a (ENSHBUG00000019218)	HMOX1 (ENSHBUG00000019221)	ENSHBUG00000019227	ENSHBUG00000019237
Lyretail cichlid	MODERN SPECIES	301	utp6 (ENSNBRG00000019714)	rab11fip4b (ENSNBRG00000019615)	ENSNBRG00000019590	ENSNBRG00000019577	ENSNBRG00000019566	ENSNBRG00000019558	ENSNBRG00000019549	ENSNBRG00000019539	ENSNBRG00000019525	ENSNBRG00000019508	elof1 (ENSNBRG00000019489)	pld6 (ENSNBRG00000019473)	RAB3D (ENSNBRG00000019454)	tspan34 (ENSNBRG00000019428)	dand5 (ENSNBRG00000019412)	NFIX (ENSNBRG00000019307) ##22	rnf11a (ENSNBRG00000019250)	HMOX1 (ENSNBRG00000019244)	ENSNBRG00000019223	ENSNBRG00000019216	NEU3 (ENSNBRG00000019205)	ENSNBRG00000019197	zglp1 (ENSNBRG00000019171)	fdx2 (ENSNBRG00000019149)	s1pr5b (ENSNBRG00000019138)	keap1b (ENSNBRG00000019129)	ENSNBRG00000019117	CDKN2D (ENSNBRG00000019096)	ap1m2 (ENSNBRG00000019060)	ENSNBRG00000018963	ENSNBRG00000018933
Nile tilapia	MODERN SPECIES	18	suz12b (ENSONIG00000018096)	utp6 (ENSONIG00000018090)	rab11fip4b (ENSONIG00000018085)	ENSONIG00000040707	ENSONIG00000034302	ENSONIG00000021229	ENSONIG00000021228	ENSONIG00000031268	ENSONIG00000032487	PLPPR2 (ENSONIG00000018084)	elof1 (ENSONIG00000028218)	pld6 (ENSONIG00000018083)	RAB3D (ENSONIG00000037772)	tspan34 (ENSONIG00000018079)	dand5 (ENSONIG00000018078)	NFIX (ENSONIG00000018077) ##22	rnf11a (ENSONIG00000037073)	HMOX1 (ENSONIG00000018076)	ENSONIG00000018073	ENSONIG00000018071	ENSONIG00000028184	NEU3 (ENSONIG00000018069)	neu3e (ENSONIG00000018070)	ENSONIG00000018068	ENSONIG00000033442	fdx2 (ENSONIG00000018067)	s1pr5b (ENSONIG00000021227)	keap1b (ENSONIG00000018066)	ENSONIG00000018063	CDKN2D (ENSONIG00000032001)	ap1m2 (ENSONIG00000018060)
Midas cichlid	MODERN SPECIES	1199	utp6 (ENSACIG00000004124)	ENSACIG00000004113	rab11fip4b (ENSACIG00000004079)	ENSACIG00000004064	ENSACIG00000004057	ENSACIG00000004043	ENSACIG00000004027	ENSACIG00000004010	ENSACIG00000003991	ENSACIG00000003925	elof1 (ENSACIG00000003834)	pld6 (ENSACIG00000003802)	RAB3D (ENSACIG00000003781)	tspan34 (ENSACIG00000003708)	dand5 (ENSACIG00000003692)	NFIX (ENSACIG00000003674) ##22	rnf11a (ENSACIG00000003661)	HMOX1 (ENSACIG00000003536)	ENSACIG00000003529	ENSACIG00000003519	NEU3 (ENSACIG00000003494)	NEU3 (ENSACIG00000003415)	ENSACIG00000003395	NEU3 (ENSACIG00000003385)	ENSACIG00000003377	zglp1 (ENSACIG00000003353)	fdx2 (ENSACIG00000003335)	s1pr5b (ENSACIG00000003324)	keap1b (ENSACIG00000003284)	ENSACIG00000003274	CDKN2D (ENSACIG00000003266)
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00940000153469.a.a.l	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000181262	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000173081	ENSGT00940000166223.b.b.b	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000181262	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Spiny chromis	MODERN SPECIES	88														ENSAPOG00000005041	dand5 (ENSAPOG00000004996)	NFIX (ENSAPOG00000004937) ##22	rnf11a (ENSAPOG00000004817)	HMOX1 (ENSAPOG00000004803)	ENSAPOG00000004786	ENSAPOG00000004766	ENSAPOG00000004745	ENSAPOG00000004728	zglp1 (ENSAPOG00000004713)	fdx2 (ENSAPOG00000004692)	s1pr5b (ENSAPOG00000004684)	keap1b (ENSAPOG00000004671)	ENSAPOG00000000116	CDKN2D (ENSAPOG00000004642)	ap1m2 (ENSAPOG00000004630)	ENSAPOG00000004583	SMARCA4 (ENSAPOG00000004542)
Amphiprion	ANCESTRAL SPECIES		ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.b	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b.a ##22	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000181262	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Orange clownfish	MODERN SPECIES	17	atad5b (ENSAPEG00000023656)	suz12b (ENSAPEG00000023614)	utp6 (ENSAPEG00000023565)	rab11fip4b (ENSAPEG00000023546)	ENSAPEG00000023536	ENSAPEG00000023522	ENSAPEG00000023513	ENSAPEG00000023510	ENSAPEG00000023499	PLPPR2 (ENSAPEG00000023488)	elof1 (ENSAPEG00000023438)	pld6 (ENSAPEG00000023430)	RAB3D (ENSAPEG00000023416)	tspan34 (ENSAPEG00000023403)	dand5 (ENSAPEG00000023394)	NFIX (ENSAPEG00000023351) ##22	rnf11a (ENSAPEG00000023334)	HMOX1 (ENSAPEG00000023325)	ENSAPEG00000023313	ENSAPEG00000023300	ENSAPEG00000023267	NEU3 (ENSAPEG00000023257)	ENSAPEG00000023251	ENSAPEG00000023241	fdx2 (ENSAPEG00000023232)	s1pr5b (ENSAPEG00000023229)	keap1b (ENSAPEG00000023223)	ENSAPEG00000023218	CDKN2D (ENSAPEG00000023215)	ap1m2 (ENSAPEG00000023204)	ENSAPEG00000023188
Bicolor damselfish	MODERN SPECIES	239	suz12b (ENSSPAG00000010969)	utp6 (ENSSPAG00000011871)	rab11fip4b (ENSSPAG00000011975)	ENSSPAG00000011997	ENSSPAG00000012007	ENSSPAG00000012010	ENSSPAG00000012018	ENSSPAG00000012021	ENSSPAG00000012037	PLPPR2 (ENSSPAG00000012085)	elof1 (ENSSPAG00000012103)	pld6 (ENSSPAG00000012116)	ENSSPAG00000012133	tspan34 (ENSSPAG00000012150)	dand5 (ENSSPAG00000012165)	NFIX (ENSSPAG00000012179) ##22	rnf11a (ENSSPAG00000012240)	HMOX1 (ENSSPAG00000012255)	ENSSPAG00000012292	ENSSPAG00000012330	NEU3 (ENSSPAG00000012338)	ENSSPAG00000012346	ENSSPAG00000012355	ENSSPAG00000012365	zglp1 (ENSSPAG00000012373)	fdx2 (ENSSPAG00000012392)	s1pr5b (ENSSPAG00000012405)	keap1b (ENSSPAG00000012410)	ENSSPAG00000012424	CDKN2D (ENSSPAG00000012438)	ap1m2 (ENSSPAG00000012447)
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00390000009016	ENSGT00940000178623	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000177737
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000173081	ENSGT00940000166223.b.b.b	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b
Tetraodontidae	ANCESTRAL SPECIES	44							ENSGT00940000166223.b.b.a.a	ENSGT00940000178623	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00940000175590	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b	ENSGT00530000063000.a.a.b.j
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	10	pi4k2b (ENSTNIG00000012041)	zgc:195282 (ENSTNIG00000001480)	ENSTNIG00000012040	ENSTNIG00000012039	chrna6 (ENSTNIG00000012038)	chrnb3a (ENSTNIG00000012037)	ENSTNIG00000012036	ENSTNIG00000000266	PLPPR2 (ENSTNIG00000002644)	elof1 (ENSTNIG00000006072)	pld6 (ENSTNIG00000006073)	ENSTNIG00000006074	tspan34 (ENSTNIG00000000549)	dand5 (ENSTNIG00000006075)	NFIX (ENSTNIG00000003955) ##22	ENSTNIG00000004024 ##22	rnf11a (ENSTNIG00000006136)	HMOX1 (ENSTNIG00000006135)	ENSTNIG00000006134	ENSTNIG00000006133	ENSTNIG00000006132	s1pr5b (ENSTNIG00000004542)	keap1b (ENSTNIG00000004541)	ENSTNIG00000004540	CDKN2D (ENSTNIG00000004539)	ap1m2 (ENSTNIG00000004538)	ENSTNIG00000004537	SMARCA4 (ENSTNIG00000004536)	atg4da (ENSTNIG00000004535)	MAST1 (ENSTNIG00000004534)	rnaseh2a (ENSTNIG00000004533)
Tetraodon	MODERN SPECIES	10	GPR78 (ENSTNIG00000012042)	pi4k2b (ENSTNIG00000012041)	zgc:195282 (ENSTNIG00000001480)	ENSTNIG00000012040	ENSTNIG00000012039	chrna6 (ENSTNIG00000012038)	chrnb3a (ENSTNIG00000012037)	ENSTNIG00000012036	ENSTNIG00000000266	PLPPR2 (ENSTNIG00000002644)	elof1 (ENSTNIG00000006072)	pld6 (ENSTNIG00000006073)	ENSTNIG00000006074	tspan34 (ENSTNIG00000000549)	dand5 (ENSTNIG00000006075)	NFIX (ENSTNIG00000003955) ##22	ENSTNIG00000004024 ##22	rnf11a (ENSTNIG00000006136)	HMOX1 (ENSTNIG00000006135)	ENSTNIG00000006134	ENSTNIG00000006133	ENSTNIG00000006132	s1pr5b (ENSTNIG00000004542)	keap1b (ENSTNIG00000004541)	ENSTNIG00000004540	CDKN2D (ENSTNIG00000004539)	ap1m2 (ENSTNIG00000004538)	ENSTNIG00000004537	SMARCA4 (ENSTNIG00000004536)	atg4da (ENSTNIG00000004535)	MAST1 (ENSTNIG00000004534)
Fugu	MODERN SPECIES	8	chrna6 (ENSTRUG00000006774)	chrnb3a (ENSTRUG00000006363)	ENSTRUG00000005961	ENSTRUG00000028490	ENSTRUG00000022133	ENSTRUG00000023417	ENSTRUG00000033282	ENSTRUG00000026092	ENSTRUG00000024735	PLPPR2 (ENSTRUG00000005826)	elof1 (ENSTRUG00000021085)	pld6 (ENSTRUG00000005778)	ENSTRUG00000005632	tspan34 (ENSTRUG00000025232)	charon (ENSTRUG00000005611)	NFIX (ENSTRUG00000005030) ##22	rnf11a (ENSTRUG00000027847)	HMOX1 (ENSTRUG00000021266)	ENSTRUG00000004540	ENSTRUG00000021117	ENSTRUG00000019645	ENSTRUG00000019733	fdx2 (ENSTRUG00000004468)	s1pr5b (ENSTRUG00000004396)	keap1b (ENSTRUG00000003855)	ENSTRUG00000003757	cdkn2D (ENSTRUG00000003739)	ap1m2 (ENSTRUG00000003149)	ENSTRUG00000033211	ENSTRUG00000002369	atg4da (ENSTRUG00000001314)
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000173081	ENSGT00940000166223.b.b.b	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.c	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089
Ballan wrasse	MODERN SPECIES	257	suz12b (ENSLBEG00000002022)	utp6 (ENSLBEG00000002115)	rab11fip4b (ENSLBEG00000002180)	ENSLBEG00000002238	ENSLBEG00000002260	ENSLBEG00000002273	ENSLBEG00000002288	ENSLBEG00000002307	PLPPR2 (ENSLBEG00000002323)	elof1 (ENSLBEG00000002341)	pld6 (ENSLBEG00000002365)	RAB3D (ENSLBEG00000002378)	tspan34 (ENSLBEG00000002395)	ENSLBEG00000002411	dand5 (ENSLBEG00000002423)	NFIX (ENSLBEG00000002432) ##22
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000173081	ENSGT00940000166223.b.b.b	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.c	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089
Perciformes	ANCESTRAL SPECIES	2	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.b	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.c	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Perciformes_a	ANCESTRAL SPECIES		ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000173081	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.b	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.c	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Pike perch	MODERN SPECIES	69	atad5b (ENSSLUG00000025011)	suz12b (ENSSLUG00000024974)	utp6 (ENSSLUG00000024856)	rab11fip4b (ENSSLUG00000024811)	ENSSLUG00000024807	ENSSLUG00000024805	ENSSLUG00000024802	ENSSLUG00000024800	ENSSLUG00000024798	PLPPR2 (ENSSLUG00000024794)	elof1 (ENSSLUG00000024791)	pld6 (ENSSLUG00000024790)	RAB3D (ENSSLUG00000024787)	tspan34 (ENSSLUG00000024786)	dand5 (ENSSLUG00000024784)	NFIX (ENSSLUG00000024749) ##22	rnf11a (ENSSLUG00000024737)	HMOX1 (ENSSLUG00000024735)	ENSSLUG00000024733	ENSSLUG00000024731	NEU3 (ENSSLUG00000024708)	ENSSLUG00000024698	ENSSLUG00000024697	fdx2 (ENSSLUG00000024696)	s1pr5b (ENSSLUG00000024694)	keap1b (ENSSLUG00000024692)	ENSSLUG00000024687	CDKN2D (ENSSLUG00000024686)	ap1m2 (ENSSLUG00000024580)	ENSSLUG00000023970	SMARCA4 (ENSSLUG00000016006)
Channel bull blenny	MODERN SPECIES		suz12b (ENSCGOG00000022125)	utp6 (ENSCGOG00000021773)	rab11fip4b (ENSCGOG00000021749)	ENSCGOG00000021744	ENSCGOG00000021743	ENSCGOG00000021741	ENSCGOG00000021740	ENSCGOG00000021738	ENSCGOG00000021737	ENSCGOG00000021735	elof1 (ENSCGOG00000021727)	pld6 (ENSCGOG00000021726)	ENSCGOG00000021724	tspan34 (ENSCGOG00000021722)	dand5 (ENSCGOG00000021720)	NFIX (ENSCGOG00000021693) ##22	rnf11a (ENSCGOG00000021688)	HMOX1 (ENSCGOG00000021690)	ENSCGOG00000021685	ENSCGOG00000021681	ENSCGOG00000021679	NEU3 (ENSCGOG00000021678)	ENSCGOG00000021677	ENSCGOG00000021676	fdx2 (ENSCGOG00000021674)	s1pr5b (ENSCGOG00000021673)	keap1b (ENSCGOG00000021671)	ENSCGOG00000021669	CDKN2D (ENSCGOG00000021666)	ap1m2 (ENSCGOG00000021610)	ENSCGOG00000021526
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000153469.a.a.l	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b
Lumpfish	MODERN SPECIES		suz12b (ENSCLMG00005003443)	utp6 (ENSCLMG00005003079)	rab11fip4b (ENSCLMG00005002835)	ENSCLMG00005002803	ENSCLMG00005002794	ENSCLMG00005009882	ENSCLMG00005009881	ENSCLMG00005009880	ENSCLMG00005009879	ENSCLMG00005009870	ENSCLMG00005009868	pld6 (ENSCLMG00005009867)	RAB3D (ENSCLMG00005009866)	tspan34 (ENSCLMG00005009728)	dand5 (ENSCLMG00005009726)	NFIX (ENSCLMG00005009722) ##22	rnf11a (ENSCLMG00005009721)	ENSCLMG00005009720	ENSCLMG00005009719	ENSCLMG00005009718	ENSCLMG00005009717	ENSCLMG00005009716	zglp1 (ENSCLMG00005009715)	fdx2 (ENSCLMG00005009714)	s1pr5b (ENSCLMG00005009713)	keap1b (ENSCLMG00005009711)	ENSCLMG00005009710	CDKN2D (ENSCLMG00005009709)	ap1m2 (ENSCLMG00005009306)	ENSCLMG00005003849	SMARCA4 (ENSCLMG00005002722)
Stickleback	MODERN SPECIES	4	rhot1b (ENSGACG00000019410)	ENSGACG00000019412	tefm (ENSGACG00000019419)	ENSGACG00000019420	suz12b (ENSGACG00000019421)	utp6 (ENSGACG00000019424)	ENSGACG00000019439	rab11fip4b (ENSGACG00000019442)	ENSGACG00000019444	ENSGACG00000019446	ENSGACG00000019448	pld6 (ENSGACG00000019449)	RAB3D (ENSGACG00000019452)	tspan34 (ENSGACG00000019454)	dand5 (ENSGACG00000019460)	NFIX (ENSGACG00000019462) ##22	ENSGACG00000019465	rnf11a (ENSGACG00000019466)	HMOX1 (ENSGACG00000019469)	ENSGACG00000019473	ENSGACG00000019475	ENSGACG00000019476	fdx2 (ENSGACG00000019477)	s1pr5b (ENSGACG00000019478)	keap1b (ENSGACG00000019479)	ENSGACG00000019486	ENSGACG00000019487	ENSGACG00000019488	CDKN2D (ENSGACG00000019491)	ap1m2 (ENSGACG00000019492)	ENSGACG00000019500
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000173081	ENSGT00940000166223.b.b.b	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.c.d	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089
Gilthead seabream	MODERN SPECIES		suz12b (ENSSAUG00010005716)	utp6 (ENSSAUG00010003949)	rab11fip4b (ENSSAUG00010003901)	ENSSAUG00010003893	ENSSAUG00010003889	ENSSAUG00010003888	ENSSAUG00010003885	ENSSAUG00010003882	palm3 (ENSSAUG00010003874)	ENSSAUG00010003869	elof1 (ENSSAUG00010003841)	pld6 (ENSSAUG00010003834)	ENSSAUG00010003832	tspan34 (ENSSAUG00010003831)	dand5 (ENSSAUG00010003827)	NFIX (ENSSAUG00010003122) ##22	rnf11a (ENSSAUG00010003075)	HMOX1 (ENSSAUG00010003067)	ENSSAUG00010003063	ENSSAUG00010003057	NEU3 (ENSSAUG00010003053)	ENSSAUG00010003043	fdx2 (ENSSAUG00010003033)	s1pr5b (ENSSAUG00010003030)	keap1b (ENSSAUG00010003018)	ENSSAUG00010003007	CDKN2D (ENSSAUG00010002999)	ap1m2 (ENSSAUG00010025874)	ENSSAUG00010025464	SMARCA4 (ENSSAUG00010025426)	atg4da (ENSSAUG00010025418)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000154739.A	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.c.d	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089
European seabass	MODERN SPECIES	20	suz12b (ENSDLAG00005004294)	utp6 (ENSDLAG00005006156)	rab11fip4b (ENSDLAG00005007920)	ENSDLAG00005034931	ENSDLAG00005035100	ENSDLAG00005034675	ENSDLAG00005007949	ENSDLAG00005007954	ENSDLAG00005033110	ENSDLAG00005029455	ENSDLAG00005007991	ENSDLAG00005008025	ENSDLAG00005021936	ENSDLAG00005008056	ENSDLAG00005030170	ENSDLAG00005008075 ##22	ENSDLAG00005031386	ENSDLAG00005008204	ENSDLAG00005032780	ENSDLAG00005008225	ENSDLAG00005008231	ENSDLAG00005008241	ENSDLAG00005029476	s1pr5b (ENSDLAG00005035010)	keap1b (ENSDLAG00005008271)	ENSDLAG00005008311	ap1m2 (ENSDLAG00005008335)	ENSDLAG00005008870	ENSDLAG00005009156	ENSDLAG00005009447	ENSDLAG00005009485
Large yellow croaker	MODERN SPECIES	481	utp6 (ENSLCRG00005016941)	rab11fip4b (ENSLCRG00005016981)	ENSLCRG00005016983	ENSLCRG00005016984	ENSLCRG00005016985	ENSLCRG00005016986	ENSLCRG00005016988	ENSLCRG00005002380	ENSLCRG00005002391	elof1 (ENSLCRG00005002398)	ENSLCRG00005002427	ENSLCRG00005002433	ENSLCRG00005002436	tspan34 (ENSLCRG00005002441)	dand5 (ENSLCRG00005002448)	NFIX (ENSLCRG00005002487) ##22	rnf11a (ENSLCRG00005002528)	HMOX1 (ENSLCRG00005002532)	ENSLCRG00005002538	ENSLCRG00005002542	ENSLCRG00005002548	NEU3 (ENSLCRG00005002553)	ENSLCRG00005002559	NEU3 (ENSLCRG00005002612)	ENSLCRG00005002614	ENSLCRG00005002617	fdx2 (ENSLCRG00005002620)	s1pr5b (ENSLCRG00005002624)	keap1 (ENSLCRG00005002628)	ENSLCRG00005002636	CDKN2D (ENSLCRG00005002639)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b.b	ENSGT00390000009016	ENSGT00940000178623	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.d	ENSGT00940000181262	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089
Carangaria	ANCESTRAL SPECIES		ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b.a	ENSGT00390000009016	ENSGT00940000166223.b.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b.f
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT00390000010581	ENSGT00940000153469.a.a.l	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.b.a	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b.f	ENSGT00530000063000.a.a.b.j
Turbot	MODERN SPECIES	20	ENSSMAG00000014855	suz12b (ENSSMAG00000014804)	utp6 (ENSSMAG00000014772)	rab11fip4b (ENSSMAG00000014743)	ENSSMAG00000014736	ENSSMAG00000014733	ENSSMAG00000014725	ENSSMAG00000023360	ENSSMAG00000014707	ENSSMAG00000014699	ENSSMAG00000027463	ENSSMAG00000014684	ENSSMAG00000014671	ENSSMAG00000014639	dand5 (ENSSMAG00000014617)	ENSSMAG00000014430 ##22	rnf11a (ENSSMAG00000014402)	HO-1 (ENSSMAG00000030685)	ENSSMAG00000014359	ENSSMAG00000014349	ENSSMAG00000014340	ENSSMAG00000034429	fdx2 (ENSSMAG00000014312)	s1pr5b (ENSSMAG00000014302)	ENSSMAG00000014293	ENSSMAG00000030085	ap1m2 (ENSSMAG00000014240)	ENSSMAG00000014211	ENSSMAG00000014050	ENSSMAG00000014004	ENSSMAG00000013970
Tongue sole	MODERN SPECIES	19	ENSCSEG00000013319	ENSCSEG00000013327	ENSCSEG00000013343	tefm (ENSCSEG00000013391)	suz12b (ENSCSEG00000013395)	utp6 (ENSCSEG00000013422)	rab11fip4b (ENSCSEG00000013558)	ENSCSEG00000013580	lrrc42 (ENSCSEG00000013583)	ENSCSEG00000013590	PLPPR2 (ENSCSEG00000013598)	elof1 (ENSCSEG00000013606)	pld6 (ENSCSEG00000013610)	ENSCSEG00000013616	dand5 (ENSCSEG00000013627)	NFIX (ENSCSEG00000013646) ##22	rnf11a (ENSCSEG00000013753)	ENSCSEG00000013762	ENSCSEG00000013767	ENSCSEG00000013771	fdx2 (ENSCSEG00000013776)	s1pr5b (ENSCSEG00000013780)	keap1b (ENSCSEG00000013786)	ENSCSEG00000013791	CDKN2D (ENSCSEG00000013798)	ap1m2 (ENSCSEG00000013803)	DOK7 (ENSCSEG00000013814)	lrpap1 (ENSCSEG00000013834)	adra2c (ENSCSEG00000013863)	hmx1 (ENSCSEG00000013871)	hmx4 (ENSCSEG00000013877)
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b.a	ENSGT00940000166223.b.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b.f
Seriola	ANCESTRAL SPECIES	29	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.b.a	ENSGT00940000166223.b.b.b.b	ENSGT00390000009016	ENSGT00940000178623	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d.j	ENSGT00950000182944.A.b.d.i	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000154819.a.b.c.b.d
Greater amberjack	MODERN SPECIES	214	atad5b (ENSSDUG00000000425)	suz12b (ENSSDUG00000000347)	utp6 (ENSSDUG00000000329)	rab11fip4b (ENSSDUG00000000230)	ENSSDUG00000000220	ENSSDUG00000000216	ENSSDUG00000000196	ENSSDUG00000000165	ENSSDUG00000023343	PLPPR2 (ENSSDUG00000023337)	elof1 (ENSSDUG00000023329)	pld6 (ENSSDUG00000023326)	RAB3D (ENSSDUG00000023322)	tspan34 (ENSSDUG00000023318)	dand5 (ENSSDUG00000023316)	NFIX (ENSSDUG00000023300) ##22	rnf11a (ENSSDUG00000023294)	HMOX1 (ENSSDUG00000023292)	ENSSDUG00000023284	ENSSDUG00000023281	NEU3 (ENSSDUG00000023279)	NEU3 (ENSSDUG00000023278)	ENSSDUG00000023275	ENSSDUG00000023273	fdx2 (ENSSDUG00000023270)	s1pr5b (ENSSDUG00000023268)	keap1b (ENSSDUG00000023265)	ENSSDUG00000023263	CDKN2D (ENSSDUG00000023261)	ap1m2 (ENSSDUG00000023256)
Yellowtail amberjack	MODERN SPECIES	2982																NFIX (ENSSLDG00000023509) ##22	rnf11a (ENSSLDG00000023520)	HMOX1 (ENSSLDG00000023531)	ENSSLDG00000023542	ENSSLDG00000023552	NEU3 (ENSSLDG00000023560)	NEU3 (ENSSLDG00000023565)	ENSSLDG00000023572	ENSSLDG00000023581	fdx2 (ENSSLDG00000023600)	s1pr5b (ENSSLDG00000023617)	keap1b (ENSSLDG00000023620)	ENSSLDG00000023625	CDKN2D (ENSSLDG00000023627)	ap1m2 (ENSSLDG00000023631)	ENSSLDG00000023644
Barramundi perch	MODERN SPECIES	113	ENSLCAG00010025165	ENSLCAG00010025170	ENSLCAG00010025173	ENSLCAG00010025175	ENSLCAG00010025178	ENSLCAG00010025183	ENSLCAG00010025186	ENSLCAG00010025188	ENSLCAG00010025191	PLPPR2 (ENSLCAG00010025196)	elof1 (ENSLCAG00010025204)	pld6 (ENSLCAG00010025218)	RAB3D (ENSLCAG00010025222)	tspan34 (ENSLCAG00010025227)	dand5 (ENSLCAG00010025230)	NFIX (ENSLCAG00010025252) ##22	rnf11a (ENSLCAG00010025300)	HMOX1 (ENSLCAG00010025306)	ENSLCAG00010025315	ENSLCAG00010025320	ENSLCAG00010025324	ENSLCAG00010025325	ENSLCAG00010025327	ENSLCAG00010025331	ENSLCAG00010025333	ENSLCAG00010025336	ENSLCAG00010025338	fdx2 (ENSLCAG00010025344)	s1pr5b (ENSLCAG00010025347)	keap1b (ENSLCAG00010025348)	ENSLCAG00010025351
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000173081	ENSGT00940000166223.b.b.b.b	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000181262	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b.d
Anabantoidei	ANCESTRAL SPECIES		ENSGT00390000010581	ENSGT00940000153469.a.a.l	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b.d	ENSGT00940000156887.b
Climbing perch	MODERN SPECIES		tefm (ENSATEG00000003433)	suz12b (ENSATEG00000003420)	utp6 (ENSATEG00000003401)	rab11fip4b (ENSATEG00000003361)	ENSATEG00000025427	ENSATEG00000027070	ENSATEG00000025517	ENSATEG00000029656	ENSATEG00000003237	ENSATEG00000003223	ENSATEG00000029063	ENSATEG00000026771	ENSATEG00000003181	ENSATEG00000003157	ENSATEG00000003118	NFIX (ENSATEG00000003018) ##22	ENSATEG00000002973	ENSATEG00000002962	ENSATEG00000029628	ENSATEG00000002944	ENSATEG00000025191	ENSATEG00000026180	fdx2 (ENSATEG00000002919)	s1pr5b (ENSATEG00000002909)	keap1b (ENSATEG00000002872)	ENSATEG00000002865	ap1m2 (ENSATEG00000002811)	ENSATEG00000002793	ENSATEG00000002785	ENSATEG00000001094	ENSATEG00000001031
Siamese fighting fish	MODERN SPECIES		rhot1b (ENSBSLG00000014548)	ADAP2 (ENSBSLG00000016113)	tefm (ENSBSLG00000016121)	ENSBSLG00000016124	suz12b (ENSBSLG00000016146)	utp6 (ENSBSLG00000016328)	rab11fip4b (ENSBSLG00000016379)	ENSBSLG00000016383	ENSBSLG00000016386	PLPPR2 (ENSBSLG00000016392)	elof1 (ENSBSLG00000016406)	pld6 (ENSBSLG00000016408)	ENSBSLG00000016412	tspan34 (ENSBSLG00000016418)	dand5 (ENSBSLG00000016422)	NFIX (ENSBSLG00000016432) ##22	rnf11a (ENSBSLG00000004959)	HMOX1 (ENSBSLG00000004992)	ENSBSLG00000005031	ENSBSLG00000005091	ENSBSLG00000005116	ENSBSLG00000005130	fdx2 (ENSBSLG00000005155)	s1pr5b (ENSBSLG00000005182)	keap1b (ENSBSLG00000005218)	ENSBSLG00000005374	CDKN2D (ENSBSLG00000005390)	ap1m2 (ENSBSLG00000005447)	ENSBSLG00000005904	SMARCA4 (ENSBSLG00000007283)	atg4da (ENSBSLG00000007401)
Zig-zag eel	MODERN SPECIES		atad5b (ENSMAMG00000002077)	suz12b (ENSMAMG00000002116)	utp6 (ENSMAMG00000002228)	rab11fip4b (ENSMAMG00000002250)	ENSMAMG00000002283	ENSMAMG00000002293	ENSMAMG00000002299	ENSMAMG00000025769	ENSMAMG00000002317	ENSMAMG00000002329	ENSMAMG00000002383	ENSMAMG00000002390	ENSMAMG00000002400	ENSMAMG00000002427	dand5 (ENSMAMG00000002436)	ENSMAMG00000002467 ##22	rnf11a (ENSMAMG00000027180)	ENSMAMG00000002595	ENSMAMG00000027973	ENSMAMG00000027487	ENSMAMG00000002631	ENSMAMG00000002648	ENSMAMG00000025847	fdx2 (ENSMAMG00000002665)	s1pr5b (ENSMAMG00000002676)	keap1b (ENSMAMG00000002679)	ENSMAMG00000002687	ENSMAMG00000025026	ap1m2 (ENSMAMG00000002700)	ENSMAMG00000002789	ENSMAMG00000002841
Tiger tail seahorse	MODERN SPECIES	518	ENSHCOG00000017350	suz12b (ENSHCOG00000017321)	utp6 (ENSHCOG00000017277)	rab11fip4b (ENSHCOG00000017263)	ENSHCOG00000017222	ENSHCOG00000017219	ENSHCOG00000017207	ENSHCOG00000017194	ENSHCOG00000017190	ENSHCOG00000017174	elof1 (ENSHCOG00000017140)	pld6 (ENSHCOG00000017130)	RAB3D (ENSHCOG00000017123)	tspan34 (ENSHCOG00000017111)	dand5 (ENSHCOG00000017105)	NFIX (ENSHCOG00000017088) ##22	rnf11a (ENSHCOG00000017008)	HMOX1 (ENSHCOG00000016995)	ENSHCOG00000016983	ENSHCOG00000016961	ENSHCOG00000016954	ENSHCOG00000016944	fdx2 (ENSHCOG00000016915)	s1pr5b (ENSHCOG00000016900)	keap1b (ENSHCOG00000016897)	ENSHCOG00000016889	CDKN2D (ENSHCOG00000016885)	ap1m2 (ENSHCOG00000016877)	ENSHCOG00000016845	ENSHCOG00000016836	ENSHCOG00000016821
Pinecone sodierfish	MODERN SPECIES		suz12b (ENSMMDG00005024787)	utp6 (ENSMMDG00005024838)	rab11fip4b (ENSMMDG00005024840)	ENSMMDG00005024841	ENSMMDG00005024842	ENSMMDG00005024843	ENSMMDG00005024844	ENSMMDG00005024845	ENSMMDG00005024846	PLPPR2 (ENSMMDG00005024847)	elof1 (ENSMMDG00005024849)	pld6 (ENSMMDG00005024850)	RAB3D (ENSMMDG00005024851)	ENSMMDG00005024852	dand5 (ENSMMDG00005024853)	NFIX (ENSMMDG00005024854) ##22	rnf11a (ENSMMDG00005024855)	HMOX1 (ENSMMDG00005024856)	ENSMMDG00005024857	ENSMMDG00005024858	ENSMMDG00005024859	zglp1 (ENSMMDG00005024860)	fdx2 (ENSMMDG00005024861)	s1pr5b (ENSMMDG00005024862)	keap1b (ENSMMDG00005024863)	ENSMMDG00005024864	CDKN2D (ENSMMDG00005024865)	ap1m2 (ENSMMDG00005024866)	ENSMMDG00005024867	SMARCA4 (ENSMMDG00005024868)	atg4da (ENSMMDG00005024869)
Cod	MODERN SPECIES	16	ENSGMOG00000011915	rhot1b (ENSGMOG00000011919)	ENSGMOG00000011930	tefm (ENSGMOG00000025857)	suz12b (ENSGMOG00000011953)	utp6 (ENSGMOG00000011958)	rab11fip4b (ENSGMOG00000011967)	ENSGMOG00000027491	ENSGMOG00000031906	ENSGMOG00000028620	ENSGMOG00000031089	ENSGMOG00000034361	ENSGMOG00000034761	ENSGMOG00000011994	dand5 (ENSGMOG00000024210)	ENSGMOG00000012009 ##22	rnf11a (ENSGMOG00000027236)	ENSGMOG00000012030	ENSGMOG00000030122	ENSGMOG00000032896	ENSGMOG00000020570	ENSGMOG00000029319	fdx2 (ENSGMOG00000012048)	ENSGMOG00000034659	s1pr5b (ENSGMOG00000017756)	ENSGMOG00000017706	ENSGMOG00000017671	acox1 (ENSGMOG00000017643)	ten1 (ENSGMOG00000017638)	evpla (ENSGMOG00000017592)	srp68 (ENSGMOG00000017562)
Protacanthopterygii	ANCESTRAL SPECIES	59	ENSGT00940000158178.b.b	ENSGT00940000153116.C.b	ENSGT00940000165438.a.b	ENSGT00940000164623.A	ENSGT00940000164108.a.b	ENSGT00940000163957.e.b	ENSGT00990000204498	ENSGT00990000204330	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00940000164506.a.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00390000012436.h	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b	ENSGT00530000063000.a.a.b.j	ENSGT00940000157700.c
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	14	ENSGT00940000165438.a.b	ENSGT00940000164623.A.c.b	ENSGT00940000164108.a.b	ENSGT00940000163957.e.b	ENSGT00990000204498	ENSGT00990000204330	ENSGT00940000158145.a.e	ENSGT00940000158145.a.f.b	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a.f	ENSGT00940000164506.a.a	ENSGT00940000164506.b.a.e.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k.c.a	ENSGT00390000017673.b.k.c.b	ENSGT00390000012436.h.d	ENSGT00940000165343.c.a	ENSGT00940000166140.a.b	ENSGT00390000017673.b.k.d	ENSGT00390000012436.h.c	ENSGT00940000165343.d	ENSGT00940000166140.a.a	ENSGT00940000157140.b.b.b.d	ENSGT00470000042444	ENSGT00940000161143.i.b	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543
Salmoninae_a	ANCESTRAL SPECIES	33	ENSGT00940000164108.a.b	ENSGT00940000163957.e.b	ENSGT00990000204498	ENSGT00990000204330	ENSGT00940000158145.a.e	ENSGT00390000000053.b.t	ENSGT00940000158145.a.f.b	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a.b	ENSGT00940000164506.b.a.f	ENSGT00940000164506.a.a	ENSGT00940000157552.s.a.a	ENSGT00940000164506.b.a.e.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k.d	ENSGT00390000012436.h.c	ENSGT00940000165343.c.a	ENSGT00940000166140.a.b	ENSGT00940000157140.b.b.b.d	ENSGT00470000042444	ENSGT00940000161143.i.b	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948.k	ENSGT00940000159801.B.c.a	ENSGT00940000159089.e	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	79	ENSGT00940000165438.a.b.f	ENSGT00940000164623.A.c.b	ENSGT00940000164108.a.b.f	ENSGT00940000163957.e.b.c	ENSGT00990000204498.a	ENSGT00990000204330.h	ENSGT00940000158145.a.f.a	ENSGT00390000009016.a	ENSGT00940000158145.a.f.b	ENSGT00390000000053.a	ENSGT00390000004368.j	ENSGT00940000157552.s.a.a	ENSGT00940000164506.b.a.e.a.a	ENSGT00940000164506.a.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.a.a ##22	ENSGT00940000163721.t.a	ENSGT00390000012436.h.d	ENSGT00940000165343.c.a.f	ENSGT00940000166140.a.a	ENSGT00940000157140.b.b.b.d.a	ENSGT00470000042444.a.a	ENSGT00940000161143.i.b	ENSGT01050000244887.A.a.a.a.i.j	ENSGT00940000159543.a	ENSGT00940000165948.l	ENSGT00940000159801.B.c.a	ENSGT00940000159089.e	ENSGT00940000154819.a.b.c.b.e	ENSGT00940000156887.b.i	ENSGT00530000063000.a.a.b.j.g
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000047269	odad3 (ENSSSAG00000000241)	ENSSSAG00000008877	nfil3-5 (ENSSSAG00000099524)	ENSSSAG00000121623	klf1 (ENSSSAG00000105668)	ENSSSAG00000000347	ENSSSAG00000083002	ENSSSAG00000000530	ENSSSAG00000095053	ENSSSAG00000070438	ENSSSAG00000115616	ENSSSAG00000000395	ENSSSAG00000000404	ENSSSAG00000119130	ENSSSAG00000090884 ##22	ENSSSAG00000094474	ENSSSAG00000039415	ENSSSAG00000039368	ENSSSAG00000039388	ENSSSAG00000100662	ENSSSAG00000112778	s1pr5b (ENSSSAG00000103422)	keap1b (ENSSSAG00000059599)	ENSSSAG00000101878	ENSSSAG00000119700	cdn2d (ENSSSAG00000000830)	ENSSSAG00000000837	ENSSSAG00000000924	ENSSSAG00000001534	ENSSSAG00000120604
River trout	MODERN SPECIES	31	ENSSTUG00000047313	SLC44A2 (ENSSTUG00000045432)	odad3 (ENSSTUG00000045301)	ENSSTUG00000045274	nfil3-5 (ENSSTUG00000045273)	ENSSTUG00000045270	klf1 (ENSSTUG00000045267)	ENSSTUG00000045265	ENSSTUG00000045260	PLPPR2 (ENSSTUG00000045247)	elof1 (ENSSTUG00000045232)	pld6 (ENSSTUG00000045225)	tspan34 (ENSSTUG00000045196)	ENSSTUG00000045190	dand5 (ENSSTUG00000045174)	NFIX (ENSSTUG00000045022) ##22	rnf11a (ENSSTUG00000045005)	ENSSTUG00000045001	ENSSTUG00000044969	ENSSTUG00000044957	ENSSTUG00000044941	ENSSTUG00000044938	ENSSTUG00000044924	ENSSTUG00000044914	fdx2 (ENSSTUG00000044907)	s1pr5b (ENSSTUG00000044895)	keap1b (ENSSTUG00000044774)	ENSSTUG00000044764	CDKN2D (ENSSTUG00000044759)	AP1M2 (ENSSTUG00000044456)	ENSSTUG00000044422
Salmo	ANCESTRAL SPECIES	75	ENSGT00940000158178.b.b.h	ENSGT01000000216566	ENSGT00940000153116.C.b.f	ENSGT00940000165438.a.b.e	ENSGT00940000164623.A.c.a	ENSGT00940000164623.A.d	ENSGT00940000164108.a.b.e	ENSGT00940000163957.e.b.d	ENSGT00990000204498.b	ENSGT00990000204330.g	ENSGT00940000158145.a.e	ENSGT00390000000053.b.t	ENSGT00390000004368.i	ENSGT00940000157552.s.a.b	ENSGT00940000164506.b.a.e.a.b	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.a.b ##22	ENSGT00940000163721.t.b	ENSGT00390000017673.b.k.d	ENSGT00390000012436.h.c	ENSGT00940000165343.c.a.e	ENSGT00940000166140.a.b	ENSGT00940000166140.b	ENSGT00940000157140.b.b.b.d.b	ENSGT00470000042444.b	ENSGT00940000161143.i.a	ENSGT01050000244887.A.a.a.a.i.i	ENSGT00940000159543.b	ENSGT00940000165948.k	ENSGT00940000159801.B.d	ENSGT00940000159089.f	ENSGT00940000154819.a.b.c.b.f
Atlantic salmon	MODERN SPECIES	3	odad3 (ENSSSAG00000008204)	ENSSSAG00000008248	nfil3-5 (ENSSSAG00000100910)	ENSSSAG00000086485	ENSSSAG00000089431	ENSSSAG00000116916	ENSSSAG00000000319	ENSSSAG00000118512	ENSSSAG00000108850	ENSSSAG00000116686	ENSSSAG00000000569	ENSSSAG00000000594	dand5 (ENSSSAG00000097215)	ENSSSAG00000119542	ENSSSAG00000109061	ENSSSAG00000000674 ##22	rnf11a (ENSSSAG00000000704)	ENSSSAG00000000719	ENSSSAG00000105344	ENSSSAG00000000734	ENSSSAG00000111482	ENSSSAG00000000738	ENSSSAG00000063503	ENSSSAG00000000748	s1pr5b (ENSSSAG00000109157)	keap1b (ENSSSAG00000000789)	ENSSSAG00000059543	ENSSSAG00000059525	ENSSSAG00000059187	ENSSSAG00000039549	ENSSSAG00000007791
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.b ##22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2932											elof1 (ENSHHUG00000042528)	pld6 (ENSHHUG00000042526)	rab3da (ENSHHUG00000042517)	tspan34 (ENSHHUG00000042514)	dand5 (ENSHHUG00000042505)	NFIX (ENSHHUG00000042496) ##22
Huchen	MODERN SPECIES	3486																NFIX (ENSHHUG00000015097) ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.b ##22
Salmo	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.b ##22
River trout	MODERN SPECIES	430																NFIX (ENSSTUG00000036994) ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.a.d ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.a.d ##22
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00940000165438.a.b	ENSGT00940000164623.A.c.b	ENSGT00940000164108.a.b	ENSGT00940000163957.e.b	ENSGT00990000204498	ENSGT00990000204330	ENSGT00940000158145.a.e	ENSGT00940000158145.a.f.b	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a.b	ENSGT00940000164506.b.a.f.a.b	ENSGT00940000164506.a.a	ENSGT00940000164506.b.a.f.b	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a.d ##22	ENSGT00940000163721	ENSGT00390000017673.b.k.d	ENSGT00390000012436.h.c	ENSGT00940000165343.c.a	ENSGT00940000166140.a.b	ENSGT00940000157140.b.b.b.d.c	ENSGT00470000042444.c.a	ENSGT00940000161143.i.b	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948.k.a.a	ENSGT00940000159801.B.c.a	ENSGT00940000159089.e	ENSGT00940000154819.a.b.c.b	ENSGT00940000156887.b
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	4	odad3 (ENSOMYG00000011834)	ENSOMYG00000068927	nfil3-5 (ENSOMYG00000011785)	ENSOMYG00000062433	klf1 (ENSOMYG00000069651)	ENSOMYG00000011763	ENSOMYG00000011743	ENSOMYG00000077480	ENSOMYG00000011655	ENSOMYG00000052930	ENSOMYG00000011525	ENSOMYG00000011585	ENSOMYG00000039118	ENSOMYG00000011600	ENSOMYG00000075789	ENSOMYG00000067255 ##22	ENSOMYG00000011475	ENSOMYG00000034574	ENSOMYG00000060084	ENSOMYG00000034627	ENSOMYG00000034636	ENSOMYG00000007049	ENSOMYG00000065341	fdx2 (ENSOMYG00000007009)	s1pr5b (ENSOMYG00000066942)	keap1b (ENSOMYG00000011445)	ENSOMYG00000011424	ENSOMYG00000011413	ENSOMYG00000011167	ENSOMYG00000010728	ENSOMYG00000009750
Rainbow trout	MODERN SPECIES	8	odad3 (ENSOMYG00000013377)	ENSOMYG00000069499	nfil3-5 (ENSOMYG00000057462)	ENSOMYG00000070441	klf1 (ENSOMYG00000063546)	ENSOMYG00000053374	ENSOMYG00000047879	ENSOMYG00000076623	ENSOMYG00000066464	ENSOMYG00000011614	ENSOMYG00000068738	ENSOMYG00000057483	ENSOMYG00000071095	ENSOMYG00000065896	dand5 (ENSOMYG00000070027)	ENSOMYG00000050973 ##22	rnf11a (ENSOMYG00000043465)	ENSOMYG00000060443	ENSOMYG00000071975	ENSOMYG00000076070	ENSOMYG00000071344	ENSOMYG00000070142	ENSOMYG00000007070	ENSOMYG00000006941	fdx2 (ENSOMYG00000048092)	s1pr5b (ENSOMYG00000006845)	keap1b (ENSOMYG00000058246)	ENSOMYG00000074612	ENSOMYG00000056829	ENSOMYG00000066058	ENSOMYG00000056046
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.a.d ##22
Coho salmon	MODERN SPECIES		SLC44A2 (ENSOKIG00005009049)	ENSOKIG00005009656	odad3 (ENSOKIG00005009672)	ENSOKIG00005009733	nfil3-5 (ENSOKIG00005009750)	ENSOKIG00005009756	ENSOKIG00005009761	ENSOKIG00005009767	ENSOKIG00005009774	PLPPR2 (ENSOKIG00005009779)	ENSOKIG00005009796	PLD6 (ENSOKIG00005009810)	rab3da (ENSOKIG00005009822)	ENSOKIG00005009859	dand5 (ENSOKIG00005020059)	NFIX (ENSOKIG00005020079) ##22	ENSOKIG00005020202	ENSOKIG00005020207	rnf11a (ENSOKIG00005020210)	ENSOKIG00005020215	ENSOKIG00005020227	ENSOKIG00005020238	ENSOKIG00005020244	ENSOKIG00005020266	fdx2 (ENSOKIG00005020273)	s1pr5b (ENSOKIG00005020277)	keap1b (ENSOKIG00005020303)	ENSOKIG00005020370	CDKN2D (ENSOKIG00005021389)	AP1M2 (ENSOKIG00005020441)	ENSOKIG00005021547
Northern pike	MODERN SPECIES	8	odad3 (ENSELUG00000024076)	ENSELUG00000024001	nfil3-5 (ENSELUG00000023904)	ENSELUG00000023901	klf1 (ENSELUG00000023894)	ENSELUG00000023878	ENSELUG00000023825	PLPPR2 (ENSELUG00000023801)	elof1 (ENSELUG00000001403)	pld6 (ENSELUG00000023764)	RAB3D (ENSELUG00000023722)	tspan34 (ENSELUG00000023690)	ENSELUG00000029302	dand5 (ENSELUG00000023679)	ENSELUG00000023674	NFIX (ENSELUG00000023645) ##22	rnf11a (ENSELUG00000032594)	hmox (ENSELUG00000023580)	ENSELUG00000023550	ENSELUG00000023533	ENSELUG00000023503	ENSELUG00000023498	ENSELUG00000023468	fdx2 (ENSELUG00000023442)	s1pr5b (ENSELUG00000023398)	keap1b (ENSELUG00000023382)	ENSELUG00000023317	CDKN2D (ENSELUG00000023292)	ap1m2 (ENSELUG00000023282)	ENSELUG00000029870	ENSELUG00000023242
Otomorpha	ANCESTRAL SPECIES	419												ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000154277.b.b.a	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j
Otophysi	ANCESTRAL SPECIES	253	ENSGT00530000063000.a.a.b.j	ENSGT00940000154556.c.a	ENSGT00940000156841.a.b	ENSGT00940000156327.l	ENSGT00390000009597.d	ENSGT00940000156530.c.`b.b.e.a	ENSGT00390000004284.f	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00390000010768	ENSGT00940000154277.b.b.a	ENSGT00940000161195.b	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00390000012078.a.b	ENSGT00940000163721	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000164506.b.a.a.b	ENSGT00940000164506.b.a.a.a	ENSGT00940000157552.s.a	ENSGT00390000004368
Characiphysae	ANCESTRAL SPECIES	32	ENSGT00940000156841.a.b	ENSGT00940000156327.l	ENSGT00390000009597.d	ENSGT00940000156530.c.`b.b.e.a	ENSGT00390000004284.f	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00390000010768	ENSGT00940000153430.b	ENSGT00940000154277.b.b.a	ENSGT00940000161195.b	ENSGT00530000063926.b	ENSGT00940000163149.b.c.b.b.a.a.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00390000012078.a.b	ENSGT00940000163721	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000164506.b.a.a.b	ENSGT00940000164506.b.a.a.a	ENSGT00940000157552.s.a	ENSGT00390000004368	ENSGT00940000156552.c.b	ENSGT00390000009001	ENSGT00550000075118	ENSGT00940000159160	ENSGT00730000111163	ENSGT00940000157563	ENSGT00940000156083
Characiphysae_b	ANCESTRAL SPECIES	49	ENSGT00940000156841.a.b	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000009597.d	ENSGT00940000156530.c.`b.b.e.a	ENSGT00390000004284.f	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00390000010768	ENSGT00940000154277.b.b.a	ENSGT00940000161195.b	ENSGT00530000063926.b	ENSGT00940000163149.b.c.b.b.a.a.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00390000012078.a.b	ENSGT00940000163721	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000164506.b.a.a.a	ENSGT00940000157552.s.a	ENSGT00390000004368	ENSGT00940000156552.c.b	ENSGT00390000009001	ENSGT00550000075118	ENSGT00940000159160	ENSGT00730000111163	ENSGT00940000157563	ENSGT00940000156083	ENSGT00940000158179.a
Characoidei	ANCESTRAL SPECIES	259					ENSGT00390000003817	ENSGT00940000161361	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00390000010768	ENSGT00940000154277.b.b.a	ENSGT00940000161195.b	ENSGT00530000063926.b	ENSGT00940000163149.b.c.b.b.a.a.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00390000012078.a.b	ENSGT00940000163721	ENSGT00940000173852	ENSGT01100000263475.f.b.h
Red-bellied piranha	MODERN SPECIES	391	ENSPNAG00000020707	ENSPNAG00000020815	get3 (ENSPNAG00000020848)	ENSPNAG00000020873	BEST2 (ENSPNAG00000020903)	ENSPNAG00000020913	fbxo48 (ENSPNAG00000020921)	ENSPNAG00000020934	prokr1a (ENSPNAG00000020941)	snrpb2 (ENSPNAG00000020984)	rnaseh2a (ENSPNAG00000021017)	prdx2 (ENSPNAG00000021025)	junba (ENSPNAG00000021060)	dand5 (ENSPNAG00000021090)	ENSPNAG00000021109	NFIX (ENSPNAG00000021168) ##22	rad23aa (ENSPNAG00000021223)	rnf11a (ENSPNAG00000021240)	ENSPNAG00000021258	ENSPNAG00000021268
Mexicana tetra	MODERN SPECIES	3	ENSAMXG00000000507	RIMS1 (ENSAMXG00000000491)	cenpk (ENSAMXG00000042770)	lbx1b (ENSAMXG00000000484)	ENSAMXG00000000481	ENSAMXG00000035498	get3 (ENSAMXG00000000478)	BEST2 (ENSAMXG00000029576)	fbxo48 (ENSAMXG00000031002)	prokr1a (ENSAMXG00000000449)	snrpb2 (ENSAMXG00000037263)	rnaseh2a (ENSAMXG00000000436)	ENSAMXG00000018995	junba (ENSAMXG00000025030)	dand5 (ENSAMXG00000030931)	ENSAMXG00000003579 ##22	rad23aa (ENSAMXG00000003562)	rnf11a (ENSAMXG00000018505)	ENSAMXG00000003529	ENSAMXG00000031403	ENSAMXG00000036035	ENSAMXG00000003539	ENSAMXG00000003509	ENSAMXG00000003518	ENSAMXG00000003502	ENSAMXG00000033547	ENSAMXG00000037034	ENSAMXG00000034099	cnrip1a (ENSAMXG00000039764)	ppp3r1b (ENSAMXG00000040369)	etaa1a (ENSAMXG00000040178)
Electric eel	MODERN SPECIES	416																NFIX (ENSEEEG00000008222) ##22	ENSEEEG00000008245	rad23aa (ENSEEEG00000008247)	rnf11a (ENSEEEG00000008249)	get3 (ENSEEEG00000008253)	BEST2 (ENSEEEG00000008270)	ENSEEEG00000008271	rab3da (ENSEEEG00000008272)	pld6 (ENSEEEG00000008274)	cnn1a (ENSEEEG00000008276)	raph1b (ENSEEEG00000008291)	spp2 (ENSEEEG00000008294)	alg11 (ENSEEEG00000008296)	cpb2 (ENSEEEG00000008298)	zc3h13 (ENSEEEG00000008300)	tm9sf2 (ENSEEEG00000008314)
Channel catfish	MODERN SPECIES	18	Ppp3r1 (ENSIPUG00000024309)	Cnrip1 (ENSIPUG00000024308)	fbxo48 (ENSIPUG00000024307)	aplf (ENSIPUG00000024306)	prokr1a (ENSIPUG00000024305)	snrpb2 (ENSIPUG00000024300)	rnaseh2a (ENSIPUG00000024299)	ENSIPUG00000024298	ctsh (ENSIPUG00000024294)	ENSIPUG00000024296	ENSIPUG00000024292	PRDX1 (ENSIPUG00000024290)	junb (ENSIPUG00000024288)	dand5 (ENSIPUG00000024287)	ENSIPUG00000024286	NFIX (ENSIPUG00000024283) ##22	rnf11a (ENSIPUG00000024270)	asna1 (ENSIPUG00000024268)	BEST2 (ENSIPUG00000024266)	ENSIPUG00000024265	ENSIPUG00000024263	ENSIPUG00000024259	zgc:172122 (ENSIPUG00000024257)	tpt1 (ENSIPUG00000024253)	gtf2f2a (ENSIPUG00000024249)	gpalpp1 (ENSIPUG00000024248)	pibf1 (ENSIPUG00000024246)	KLF5 (ENSIPUG00000024245)	KLF12 (ENSIPUG00000024244)	ENSIPUG00000024243	ENSIPUG00000024242
Cyprinoidei	ANCESTRAL SPECIES	30	ENSGT00530000063000.a.a.b.j	ENSGT00940000154556.c.a	ENSGT00940000156841.a.b	ENSGT00940000156327.l	ENSGT00390000009597.d	ENSGT00940000156530.c.`b.b.e.a	ENSGT00390000004284.f	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00390000010768	ENSGT00940000154277.b.b.a	ENSGT00940000161195.b	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00390000012078.a.b	ENSGT00940000163721	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000164506.b.a.a.b	ENSGT00940000157552.s.a	ENSGT00940000165237.b.b	ENSGT01060000250057	ENSGT01000000214715	ENSGT00390000017281	ENSGT00950000182942.a.a	ENSGT00390000002596.b.a	ENSGT00390000001189.b.j	ENSGT00940000153745.b.e.a.f	ENSGT00940000154658.b.i.b
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	546						ENSGT00940000156530.c.`b.b.e.a.b	ENSGT00390000004284.f.c	ENSGT00390000012248.p	ENSGT00390000010591.i	ENSGT00940000170452.b	ENSGT00390000007046.a.g	ENSGT00390000010768.a	ENSGT00940000154277.b.b.a.e	ENSGT00940000161195.b.b	ENSGT00530000063926.b.a	ENSGT00950000182916.a.b.a.a.a.b.a.a.e.a.a ##22	ENSGT00390000012078.a.b.b	ENSGT00940000163721.d.a	ENSGT00390000003817.n	ENSGT00940000161361.d	ENSGT00940000164506.b.a.a.b	ENSGT00940000157552.s.a.h	ENSGT00390000004368	ENSGT00940000159680.r	ENSGT00940000165237.b.b.a
Cyprininae_a	ANCESTRAL SPECIES	64	ENSGT00530000063000.a.a.b.j.b	ENSGT00940000154556.c.a.a.a	ENSGT00940000156841.a.b.h.b	ENSGT00940000156327.l.j.b.b	ENSGT00390000009597.d.a	ENSGT00940000156530.c.`b.b.e.a.a.b	ENSGT00390000004284.f.c	ENSGT00390000012248.p	ENSGT00390000010591.i	ENSGT00940000170452.b	ENSGT00390000007046.a.g	ENSGT00390000010768.a	ENSGT00940000154277.b.b.a.e	ENSGT00940000161195.b.b	ENSGT00530000063926.b.a	ENSGT00950000182916.a.b.a.a.a.b.a.a.e.a.a ##22	ENSGT00950000182916.a.b.a.a.a.b.a.a.e.b ##22	ENSGT00390000012078.a.b.b	ENSGT00940000163721.d.b	ENSGT00390000003817.n	ENSGT00940000161361.d	ENSGT00940000164506.b.a.a.b	ENSGT00940000157552.s.a.h	ENSGT00390000004368	ENSGT00940000159680.r	ENSGT00940000165237.b.b.a	ENSGT01060000250057.b	ENSGT01000000214715.b.a	ENSGT01000000214715.a.a.a	ENSGT00390000017281.e	ENSGT00390000002596.b.a.b
Common carp reference	MODERN SPECIES	27	ENSCCRG00000033365	atg4da (ENSCCRG00000070945)	actr2a (ENSCCRG00000000090)	meis1a (ENSCCRG00000000669)	ENSCCRG00000052788	etaa1a (ENSCCRG00000000686)	ppp3r1b (ENSCCRG00000018396)	cnrip1a (ENSCCRG00000000742)	fbxo48 (ENSCCRG00000061231)	APLF (ENSCCRG00000000068)	prokr1a (ENSCCRG00000000061)	rnaseh2a (ENSCCRG00000000063)	prdx2 (ENSCCRG00000064594)	junba (ENSCCRG00000000065)	dand5 (ENSCCRG00000000059)	ENSCCRG00000066847 ##22	rad23aa (ENSCCRG00000058608)	rnf11a (ENSCCRG00000070076)	get3 (ENSCCRG00000077731)	ENSCCRG00000024647	ENSCCRG00000079815	pld6 (ENSCCRG00000013139)	cnn1a (ENSCCRG00000013135)	ENSCCRG00000076987	ENSCCRG00000059022	ENSCCRG00000078248	ENSCCRG00000066169	ENSCCRG00000050779	ENSCCRG00000050778	ccdc86 (ENSCCRG00000050764)	cldnd1b (ENSCCRG00000050762)
Goldfish	MODERN SPECIES	18	atg4da (ENSCARG00000024045)	actr2a (ENSCARG00000023942)	SPRED2 (ENSCARG00000023931)	meis1a (ENSCARG00000023885)	etaa1a (ENSCARG00000023863)	ppp3r1b (ENSCARG00000023762)	cnrip1a (ENSCARG00000023747)	fbxo48 (ENSCARG00000023742)	APLF (ENSCARG00000023715)	prokr1a (ENSCARG00000023707)	snrpb2 (ENSCARG00000023693)	rnaseh2a (ENSCARG00000023660)	prdx2 (ENSCARG00000023646)	junba (ENSCARG00000023638)	dand5 (ENSCARG00000023632)	NFIX (ENSCARG00000023545) ##22	rad23aa (ENSCARG00000023507)	rnf11a (ENSCARG00000023499)	get3 (ENSCARG00000023496)	BEST2 (ENSCARG00000023490)	ENSCARG00000023481	ENSCARG00000023466	ENSCARG00000023433	pld6 (ENSCARG00000023417)	cnn1a (ENSCARG00000023410)	ENSCARG00000023403
Cyprininae	ANCESTRAL SPECIES	38	ENSGT00530000063000.a.a.b.j.a	ENSGT00940000154556.c.a.b	ENSGT00940000156841.a.b.h.a.a	ENSGT00940000156327.l.j.b	ENSGT00390000009597.d	ENSGT00940000156530.c.`b.b.e.a.a.a.b.a	ENSGT00390000004284.f.d	ENSGT00390000012248.o	ENSGT00390000010591.j	ENSGT00940000170452.a	ENSGT00390000007046.a.h	ENSGT00390000010768.b	ENSGT00940000154277.b.b.a.f	ENSGT00940000161195.b.a	ENSGT00530000063926.b.b	ENSGT00950000182916.a.b.a.a.a.b.a.a.e.a.b ##22	ENSGT00390000012078.a.b.a	ENSGT00940000163721.d.b	ENSGT00390000003817.m	ENSGT00940000161361.c	ENSGT00940000157552.s.a.g	ENSGT00940000165237.b.b.b
Goldfish	MODERN SPECIES	18	atg4da (ENSCARG00000004028)	actr2a (ENSCARG00000003899)	SPRED2 (ENSCARG00000003861)	meis1a (ENSCARG00000017082)	etaa1a (ENSCARG00000017051)	ppp3r1b (ENSCARG00000016973)	cnrip1a (ENSCARG00000016943)	fbxo48 (ENSCARG00000016937)	ENSCARG00000016923	prokr1a (ENSCARG00000016916)	snrpb2 (ENSCARG00000016906)	rnaseh2a (ENSCARG00000016861)	prdx2 (ENSCARG00000016839)	junba (ENSCARG00000016833)	dand5 (ENSCARG00000016828)	NFIX (ENSCARG00000016755) ##22	rad23aa (ENSCARG00000016715)	rnf11a (ENSCARG00000016712)	get3 (ENSCARG00000016701)	BEST2 (ENSCARG00000016691)	ENSCARG00000016684	ENSCARG00000016674	rab3da (ENSCARG00000016667)	pld6 (ENSCARG00000016655)	cnn1a (ENSCARG00000016643)	ENSCARG00000016639	ENSCARG00000016629	ENSCARG00000016622	ENSCARG00000016611	ENSCARG00000016607	ccdc86 (ENSCARG00000016589)
Cyprininae_a	ANCESTRAL SPECIES	66	ENSGT00940000156841.a.b.h.a.a	ENSGT00940000156327.l.j.a.a	ENSGT00940000154556.c.a.a.b	ENSGT00940000156841.a.b.g	ENSGT00940000156327.l.j.b.a	ENSGT00390000009597.d.b	ENSGT00940000156530.c.`b.b.e.a.a.a.b.a	ENSGT00390000004284.f.d	ENSGT00390000012248.o	ENSGT00390000010591.j	ENSGT00940000170452.a	ENSGT00390000007046.a.h	ENSGT00390000010768.b	ENSGT00940000154277.b.b.a.f	ENSGT00940000161195.b.a	ENSGT00950000182916.a.b.a.a.a.b.a.a.e.a.b ##22	ENSGT00390000012078.a.b.a	ENSGT00940000163721.d.a	ENSGT00390000003817.m	ENSGT00940000161361.c	ENSGT00940000157552.s.a.g	ENSGT00940000165237.b.b.b	ENSGT01060000250057.a
Common carp reference	MODERN SPECIES	22	esf1 (ENSCCRG00000020205)	ndufaf5 (ENSCCRG00000053140)	ENSCCRG00000064320	ENSCCRG00000061116	atg4da (ENSCCRG00000053920)	actr2a (ENSCCRG00000082302)	ENSCCRG00000073155	meis1a (ENSCCRG00000000380)	etaa1a (ENSCCRG00000073575)	ppp3r1b (ENSCCRG00000061499)	ENSCCRG00000000428	prokr1a (ENSCCRG00000007264)	snrpb2 (ENSCCRG00000007265)	prdx2 (ENSCCRG00000081562)	junba (ENSCCRG00000070741)	ENSCCRG00000049624 ##22	rad23aa (ENSCCRG00000027343)	rnf11a (ENSCCRG00000046170)	get3 (ENSCCRG00000027319)	ENSCCRG00000059098	rab3da (ENSCCRG00000024640)	ENSCCRG00000000754	ENSCCRG00000069520	ENSCCRG00000018630	glb1 (ENSCCRG00000018962)	ccdc86 (ENSCCRG00000071868)	cldnd1b (ENSCCRG00000066473)	ENSCCRG00000050755	tacr3l (ENSCCRG00000018652)	abca1a (ENSCCRG00000021525)	ENSCCRG00000058235
Cyprininae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.a.e.b ##22
Cyprininae_a	ANCESTRAL SPECIES	64	ENSGT00940000154556.c.a.a.a	ENSGT00940000156841.a.b.h.b	ENSGT00940000156327.l.j.b.b	ENSGT00390000009597.d.a	ENSGT00940000156530.c.`b.b.e.a.a.b	ENSGT00390000004284.f.c	ENSGT00390000012248.p	ENSGT00390000010591.i	ENSGT00940000170452.b	ENSGT00390000007046.a.g	ENSGT00390000010768.a	ENSGT00940000154277.b.b.a.e	ENSGT00940000161195.b.b	ENSGT00530000063926.b.a	ENSGT00950000182916.a.b.a.a.a.b.a.a.e.a.a ##22	ENSGT00950000182916.a.b.a.a.a.b.a.a.e.b ##22	ENSGT00390000012078.a.b.b	ENSGT00940000163721.d.b	ENSGT00390000003817.n	ENSGT00940000161361.d	ENSGT00940000164506.b.a.a.b	ENSGT00940000157552.s.a.h	ENSGT00390000004368	ENSGT00940000159680.r	ENSGT00940000165237.b.b.a	ENSGT01060000250057.b	ENSGT01000000214715.b.a	ENSGT01000000214715.a.a.a	ENSGT00390000017281.e	ENSGT00390000002596.b.a.b	ENSGT00390000001189.b.j.i.a
Golden-line barbel	MODERN SPECIES	1350																NFIX (ENSSGRG00000009654) ##22	rad23aa (ENSSGRG00000009655)	rnf11a (ENSSGRG00000009656)	get3 (ENSSGRG00000009657)	ENSSGRG00000009659	rab3da (ENSSGRG00000009663)	pld6 (ENSSGRG00000009665)	cnn1a (ENSSGRG00000009669)	ENSSGRG00000009700
Cyprininae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.a.f ##22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.a.f ##22
Golden-line barbel	MODERN SPECIES	50	KIF16B (ENSSGRG00000015518)	MAST1 (ENSSGRG00000015521)	atg4da (ENSSGRG00000015527)	actr2a (ENSSGRG00000015543)	SPRED2 (ENSSGRG00000015617)	meis1a (ENSSGRG00000015623)	etaa1a (ENSSGRG00000015624)	ppp3r1b (ENSSGRG00000015625)	cnrip1a (ENSSGRG00000015643)	fbxo48 (ENSSGRG00000015644)	prokr1a (ENSSGRG00000015648)	snrpb2 (ENSSGRG00000015650)	rnaseh2a (ENSSGRG00000015662)	prdx2 (ENSSGRG00000015663)	junba (ENSSGRG00000015754)	NFIX (ENSSGRG00000015756) ##22	rad23aa (ENSSGRG00000015758)	rnf11a (ENSSGRG00000015759)	get3 (ENSSGRG00000015760)	ENSSGRG00000015767	ENSSGRG00000015769	rab3da (ENSSGRG00000015770)	ENSSGRG00000015771
Goldfish	MODERN SPECIES	914													junba (ENSCARG00000046304)	dand5 (ENSCARG00000046326)	ENSCARG00000053047	NFIX (ENSCARG00000053081) ##22	rad23aa (ENSCARG00000053451)	rnf11a (ENSCARG00000053462)	get3 (ENSCARG00000053488)	rab3da (ENSCARG00000053532)	ENSCARG00000053563
Zebrafish	MODERN SPECIES		atg4da (ENSDARG00000043548)	actr2a (ENSDARG00000052438)	SPRED2 (ENSDARG00000052435)	meis1a (ENSDARG00000002937)	etaa1a (ENSDARG00000074915)	ppp3r1b (ENSDARG00000069360)	cnrip1a (ENSDARG00000091683)	fbxo48 (ENSDARG00000086184)	ENSDARG00000096566	prokr1a (ENSDARG00000074182)	snrpb2 (ENSDARG00000039424)	rnaseh2a (ENSDARG00000018891)	prdx2 (ENSDARG00000025350)	junba (ENSDARG00000074378)	dand5 (ENSDARG00000036471)	NFIX (ENSDARG00000043226) ##22	rad23aa (ENSDARG00000020001)	ENSDARG00000113791	rnf11a (ENSDARG00000010442)	get3 (ENSDARG00000018190)	BEST2 (ENSDARG00000079163)	rab3da (ENSDARG00000018107)	pld6 (ENSDARG00000059951)	cnn1a (ENSDARG00000017193)	ENSDARG00000059948	ENSDARG00000095434	ENSDARG00000093494	zgc:194101 (ENSDARG00000076828)	ENSDARG00000088234	ENSDARG00000093748	si:ch211-217k17.10 (ENSDARG00000079345)
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22
Cryptodira	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22
Emydidae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22
Three-toed box turtle	MODERN SPECIES	2293																ENSTMTG00000016165 ##22
Actinopterygii	ANCESTRAL SPECIES	163	ENSGT00940000156719	ENSGT00940000163421.b.a	ENSGT00940000154739.A	ENSGT00990000204330	ENSGT00940000158145	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00390000004368	ENSGT00940000157552	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22
Reedfish	MODERN SPECIES	8	ENSECRG00000022064	nfil3-6 (ENSECRG00000022073)	nfil3-5 (ENSECRG00000022077)	ENSECRG00000022081	ENSECRG00000022091	plppr2a (ENSECRG00000022103)	tlcd4b (ENSECRG00000022121)	CNN1 (ENSECRG00000022133)	elof1 (ENSECRG00000022142)	tmem205 (ENSECRG00000022157)	pld6 (ENSECRG00000022167)	rab3db (ENSECRG00000022173)	epor (ENSECRG00000022187)	ENSECRG00000022202	tspan35 (ENSECRG00000022210)	nfixb (ENSECRG00000022267) ##22	LDLR (ENSECRG00000022353)	smarca4a (ENSECRG00000022404)	ap1m2 (ENSECRG00000022504)	CDKN2D (ENSECRG00000022521)	kri1 (ENSECRG00000022529)	ENSECRG00000022550	atg4da (ENSECRG00000022566)	MAST1 (ENSECRG00000022588)	rtbdn (ENSECRG00000016742)	rnaseh2a (ENSECRG00000016753)	PRDX2 (ENSECRG00000016770)	junba (ENSECRG00000016788)	hook2 (ENSECRG00000016806)	BEST2 (ENSECRG00000016838)	get3 (ENSECRG00000016877)
Neopterygii	ANCESTRAL SPECIES	86	ENSGT00990000204330	ENSGT00990000204498	ENSGT00900000143551	ENSGT00940000158178	ENSGT00940000158116	ENSGT00940000168682	ENSGT00940000166067	ENSGT00390000006387	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00940000163721	ENSGT00390000012267	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000160152	ENSGT00940000161195.a.a	ENSGT00940000161195.a.b	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00530000063000.a.a.b	ENSGT00940000156887	ENSGT00940000161046
Spotted gar	MODERN SPECIES	672	plppr2a (ENSLOCG00000008196)	tlcd4b (ENSLOCG00000008184)	cnn1a (ENSLOCG00000008170)	elof1 (ENSLOCG00000008159)	tmem205 (ENSLOCG00000008148)	pld6 (ENSLOCG00000008138)	rab3db (ENSLOCG00000008126)	epor (ENSLOCG00000008110)	ENSLOCG00000008092	ZNF653 (ENSLOCG00000008078)	tspan35 (ENSLOCG00000008073)	ENSLOCG00000008063	zgc:158403 (ENSLOCG00000008037)	ENSLOCG00000008024	ENSLOCG00000008013	nfixb (ENSLOCG00000007997) ##22	rad23aa (ENSLOCG00000007980)	trir (ENSLOCG00000007974)	get3 (ENSLOCG00000007957)	BEST2 (ENSLOCG00000007943)	hook2 (ENSLOCG00000007916)	junbb (ENSLOCG00000018297)	prdx2 (ENSLOCG00000007904)	rnaseh2a (ENSLOCG00000007890)	rtbdn (ENSLOCG00000007879)	MAST1 (ENSLOCG00000007853)	atg4da (ENSLOCG00000007842)	smarca4a (ENSLOCG00000007820)	LDLR (ENSLOCG00000007795)	ap1m2 (ENSLOCG00000007782)	CDKN2D (ENSLOCG00000007768)
Osteoglossocephalai	ANCESTRAL SPECIES	128	ENSGT00940000158145.a	ENSGT00940000165438.b	ENSGT00940000164623.B	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000177692	ENSGT00390000012078.a.b	ENSGT00940000163721	ENSGT00390000012267	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000160152	ENSGT00940000161195.b	ENSGT00940000159089	ENSGT00940000159801.B	ENSGT00390000005605	ENSGT00390000005584	ENSGT01050000244887.A.a.a.a	ENSGT00940000157140.b.b.a
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	41	ENSGT00970000193546	ENSGT00940000165438.b	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c.i	ENSGT00390000000053.a	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315.a	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b.g	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b.a ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b.b ##22	ENSGT00390000012078.a.b	ENSGT00940000163721	ENSGT00390000012267	ENSGT00390000003817.c	ENSGT00940000161361	ENSGT00940000160152.m	ENSGT00940000161195.a.a.a	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B.db.a	ENSGT00940000157700.a	ENSGT00530000063000.a.a.b	ENSGT00940000156887.b
Asian bonytongue	MODERN SPECIES	12	ENSSFOG00015009031	klf1 (ENSSFOG00015009039)	ENSSFOG00015009054	PLPPR2 (ENSSFOG00015009086)	ENSSFOG00015032061	cnn1a (ENSSFOG00015027093)	ELOF1 (ENSSFOG00015026539)	pld6 (ENSSFOG00015031882)	rab3da (ENSSFOG00015031001)	epor (ENSSFOG00015030546)	ENSSFOG00015009247	ENSSFOG00015009276	ENSSFOG00015009288	ENSSFOG00015009317	dand5 (ENSSFOG00015009362)	nfixb (ENSSFOG00015009407) ##22	ENSSFOG00015028565	rad23aa (ENSSFOG00015009506)	rnf11a (ENSSFOG00015009524)	TRIR (ENSSFOG00015025754)	get3 (ENSSFOG00015009554)	BEST2 (ENSSFOG00015009584)	HOOK2 (ENSSFOG00015009620)	JUNB (ENSSFOG00015031678)	ENSSFOG00015009666	rnaseh2a (ENSSFOG00015009692)	rtbdn (ENSSFOG00015009745)	MAST1 (ENSSFOG00015009789)	atg4da (ENSSFOG00015009908)	SMARCA4 (ENSSFOG00015009921)	ENSSFOG00015010040
P. kingsleyae	MODERN SPECIES	99	GAA (ENSPKIG00000008286)	cbx4 (ENSPKIG00000008319)	cbx8a (ENSPKIG00000008343)	si:dkey-31g6.6 (ENSPKIG00000008369)	ENSPKIG00000008414	scpep1 (ENSPKIG00000008480)	ENSPKIG00000008553	rab11fip4a (ENSPKIG00000008587)	rab3db (ENSPKIG00000008643)	epor (ENSPKIG00000008670)	ENSPKIG00000008687	ZNF653 (ENSPKIG00000008708)	tspan35 (ENSPKIG00000008740)	zgc:158403 (ENSPKIG00000008795)	ENSPKIG00000008896	nfixb (ENSPKIG00000008985) ##22
Osteoglossiformes	ANCESTRAL SPECIES	41	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c.i	ENSGT00390000000053.a	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315.a	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b.g	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b.a ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b.b ##22	ENSGT00390000012078.a.b	ENSGT00940000163721	ENSGT00390000012267	ENSGT00390000003817.c	ENSGT00940000161361	ENSGT00940000160152.m	ENSGT00940000161195.a.a.a	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B.db.a	ENSGT00940000157700.a	ENSGT00530000063000.a.a.b	ENSGT00940000156887.b	ENSGT00940000154819.a.b.d	ENSGT00940000159089
P. kingsleyae	MODERN SPECIES	45	nfil3-5 (ENSPKIG00000008813)	nfil3-6 (ENSPKIG00000008824)	klf1 (ENSPKIG00000008842)	ENSPKIG00000008851	ENSPKIG00000008887	ENSPKIG00000008909	PLPPR2 (ENSPKIG00000008928)	ENSPKIG00000008942	cnn1a (ENSPKIG00000008965)	elof1 (ENSPKIG00000008991)	pld6 (ENSPKIG00000009005)	rab3da (ENSPKIG00000009021)	epor (ENSPKIG00000009064)	ENSPKIG00000009117	dand5 (ENSPKIG00000009143)	nfixb (ENSPKIG00000009239) ##22	rad23aa (ENSPKIG00000009389)	rnf11a (ENSPKIG00000009428)	TRIR (ENSPKIG00000009548)	get3 (ENSPKIG00000009567)	BEST2 (ENSPKIG00000009609)	HOOK2 (ENSPKIG00000009652)	JUNB (ENSPKIG00000009704)	PRDX2 (ENSPKIG00000009726)	rnaseh2a (ENSPKIG00000009756)	rtbdn (ENSPKIG00000009782)	MAST1 (ENSPKIG00000009888)	atg4da (ENSPKIG00000010015)	SMARCA4 (ENSPKIG00000010087)	ENSPKIG00000010225	ap1m2 (ENSPKIG00000010279)
Asian bonytongue	MODERN SPECIES	18	nfil3-6 (ENSSFOG00015014698)	plppr2a (ENSSFOG00015014676)	tlcd4b (ENSSFOG00015014661)	CNN1 (ENSSFOG00015014639)	elof1 (ENSSFOG00015031713)	tmem205 (ENSSFOG00015028018)	rab3db (ENSSFOG00015026404)	epor (ENSSFOG00015030139)	ENSSFOG00015014555	ZNF653 (ENSSFOG00015014543)	tspan35 (ENSSFOG00015014521)	ENSSFOG00015014503	dhps (ENSSFOG00015028198)	zgc:158403 (ENSSFOG00015014474)	GADD45GIP1 (ENSSFOG00015024648)	nfixb (ENSSFOG00015014321) ##22	trir (ENSSFOG00015028164)	get3 (ENSSFOG00015027208)	HOOK2 (ENSSFOG00015014239)	junbb (ENSSFOG00015009655)	ENSSFOG00015014054	rtbdn (ENSSFOG00015014018)	MAST1 (ENSSFOG00015013958)	ENSSFOG00015013947	smarca4a (ENSSFOG00015013823)	ldlra (ENSSFOG00015013750)	CDKN2D (ENSSFOG00015032731)	kri1 (ENSSFOG00015013646)	spc24 (ENSSFOG00015013634)	S1PR5 (ENSSFOG00015024243)	ENSSFOG00015013623
Clupeocephala	ANCESTRAL SPECIES	5	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00940000164506.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b
Euteleosteomorpha	ANCESTRAL SPECIES	476															ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b
Acanthomorphata	ANCESTRAL SPECIES	25	ENSGT00940000164108.a.a	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00940000155774.b	ENSGT01010000222553	ENSGT00940000162350.b.a	ENSGT00940000162350.b.b	ENSGT00710000107036.a.a	ENSGT00390000003753	ENSGT00390000013260.A.b.a	ENSGT00950000182961.a.b.b	ENSGT00940000157534.a.b	ENSGT00940000155083.a	ENSGT01000000214705	ENSGT00940000175473	ENSGT00950000182696.A.a.a.b	ENSGT01050000244814.a.a.a.b
Cod	MODERN SPECIES	11	ENSGMOG00000025094	ENSGMOG00000028355	ENSGMOG00000023392	ENSGMOG00000022765	ENSGMOG00000035332	ENSGMOG00000031065	tmem205 (ENSGMOG00000002139)	rab3db (ENSGMOG00000023041)	epor (ENSGMOG00000035420)	ENSGMOG00000023806	ENSGMOG00000025526	tspan35 (ENSGMOG00000002253)	zgc:158403 (ENSGMOG00000012969)	ENSGMOG00000012967	ENSGMOG00000033872	ENSGMOG00000022808 ##22	ENSGMOG00000011599	ENSGMOG00000011605	ndel1b (ENSGMOG00000011616)	ENSGMOG00000032913	ENSGMOG00000011627	hs3st3b1a (ENSGMOG00000028371)	ttyh2l (ENSGMOG00000016618)	CHMP6 (ENSGMOG00000016641)	baiap2a (ENSGMOG00000016653)	AATK (ENSGMOG00000036353)	ENSGMOG00000028108	ENSGMOG00000035698	ENSGMOG00000007025	ENSGMOG00000016728	ENSGMOG00000022351
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000177692	ENSGT00390000012078.a.b	ENSGT00940000155774.b	ENSGT00940000162350.b.a	ENSGT00940000162350.b.b	ENSGT00710000107036.a.a	ENSGT00390000003753	ENSGT00390000013260.A.b.a	ENSGT00950000182961.a.b.b	ENSGT00940000157534.a.b	ENSGT00940000155083.a	ENSGT01000000214705	ENSGT00950000182696.A.a.a.b	ENSGT01050000244814.a.a.a.b	ENSGT00940000157896
Pinecone sodierfish	MODERN SPECIES	22	ENSMMDG00005022691	nfil3-6 (ENSMMDG00005022695)	ENSMMDG00005022697	plppr2a (ENSMMDG00005022700)	tlcd4b (ENSMMDG00005022713)	CNN1 (ENSMMDG00005022730)	ELOF1 (ENSMMDG00005022741)	tmem205 (ENSMMDG00005022745)	rab3db (ENSMMDG00005022751)	epor (ENSMMDG00005022758)	swsap1 (ENSMMDG00005022807)	ZNF653 (ENSMMDG00005022814)	tspan35 (ENSMMDG00005022818)	zgc:158403 (ENSMMDG00005022858)	GADD45GIP1 (ENSMMDG00005023074)	nfixb (ENSMMDG00005023079) ##22	rad23aa (ENSMMDG00005023099)	ENSMMDG00005023118	ddx47 (ENSMMDG00005004136)	ENSMMDG00005004193	ENSMMDG00005004201	ENSMMDG00005004208	ENSMMDG00005004217	GPRC5D (ENSMMDG00005004221)	ENSMMDG00005004233	ENSMMDG00005004248	ENSMMDG00005004264	EMP1 (ENSMMDG00005004284)	ENSMMDG00005004294	GRIN2B (ENSMMDG00005004305)	FMC1 (ENSMMDG00005004323)
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b	ENSGT00950000182803.A.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981
Tiger tail seahorse	MODERN SPECIES	432	ENSHCOG00000019664	nfil3-6 (ENSHCOG00000019669)	ENSHCOG00000019681	plppr2a (ENSHCOG00000019689)	tlcd4b (ENSHCOG00000019707)	CNN1 (ENSHCOG00000019728)	ELOF1 (ENSHCOG00000019738)	tmem205 (ENSHCOG00000019740)	rab3db (ENSHCOG00000019755)	epor (ENSHCOG00000019762)	swsap1 (ENSHCOG00000019772)	ENSHCOG00000019775	tspan35 (ENSHCOG00000019789)	zgc:158403 (ENSHCOG00000019842)	ENSHCOG00000019852	nfixb (ENSHCOG00000019931) ##22	rad23aa (ENSHCOG00000019955)	gng13b (ENSHCOG00000019960)	traf7 (ENSHCOG00000019965)	CASKIN1 (ENSHCOG00000019986)	prpsap2 (ENSHCOG00000020022)	ENSHCOG00000020033	carhsp1 (ENSHCOG00000020043)	nat15 (ENSHCOG00000020066)	dnase1 (ENSHCOG00000020075)	eci1 (ENSHCOG00000020098)	ENSHCOG00000020107	ENSHCOG00000020132	aldh16a1 (ENSHCOG00000000610)	fthl31 (ENSHCOG00000020167)	syt5a (ENSHCOG00000000077)
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a.p
Atherinomorphae	ANCESTRAL SPECIES	25	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000177748	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000177692	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135
Oryzias	ANCESTRAL SPECIES		ENSGT00940000164108.a.a	ENSGT00940000177748	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00940000178401	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a.p.c
Oryzias_b	ANCESTRAL SPECIES	42	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00940000178401	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000166981	ENSGT00950000182841.a.o.b	ENSGT01030000235305.a	ENSGT00950000182841.a.p.d	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b
Indian medaka	MODERN SPECIES	9	pglyrp6 (ENSOMEG00000010062)	ENSOMEG00000010110	ENSOMEG00000010125	plppr2a (ENSOMEG00000010172)	tlcd4b (ENSOMEG00000010228)	CNN1 (ENSOMEG00000010268)	tmem205 (ENSOMEG00000010284)	rab3db (ENSOMEG00000000244)	ELOF1 (ENSOMEG00000010340)	epor (ENSOMEG00000010366)	swsap1 (ENSOMEG00000010382)	ZNF653 (ENSOMEG00000010400)	tspan35 (ENSOMEG00000010413)	ENSOMEG00000010427	zgc:158403 (ENSOMEG00000010538)	nfixb (ENSOMEG00000010862) ##22	rad23aa (ENSOMEG00000010957)	gng13b (ENSOMEG00000010977)	ENSOMEG00000010985	ENSOMEG00000011000	ENSOMEG00000011077	ENSOMEG00000011186	si:dkey-16p21.8 (ENSOMEG00000011207)	prl (ENSOMEG00000011227)	dusp3b (ENSOMEG00000011244)	thraa (ENSOMEG00000011291)	ENSOMEG00000011319	TANC2 (ENSOMEG00000011411)	cyb561 (ENSOMEG00000011454)	HDAC5 (ENSOMEG00000011665)	pex12 (ENSOMEG00000011719)
Javanese ricefish	MODERN SPECIES	22	CNN1 (ENSOJAG00000000221)	ELOF1 (ENSOJAG00000000179)	tmem205 (ENSOJAG00000000148)	rab3db (ENSOJAG00000000136)	epor (ENSOJAG00000000106)	swsap1 (ENSOJAG00000023281)	ZNF653 (ENSOJAG00000023273)	tspan35 (ENSOJAG00000023268)	ENSOJAG00000023267	ENSOJAG00000023265	ENSOJAG00000023263	zgc:158403 (ENSOJAG00000023241)	ENSOJAG00000023236	ENSOJAG00000023232	ENSOJAG00000023223	nfixb (ENSOJAG00000023186) ##22	rad23aa (ENSOJAG00000023162)	gng13b (ENSOJAG00000023158)	ENSOJAG00000023146	ENSOJAG00000023144	ENSOJAG00000023132	ENSOJAG00000023125	ENSOJAG00000023121	ENSOJAG00000023118	ENSOJAG00000023114	ENSOJAG00000023110	ENSOJAG00000023105	syt5a (ENSOJAG00000023082)	ENSOJAG00000023066	ENSOJAG00000023049	traf7 (ENSOJAG00000023027)
Oryzias_a	ANCESTRAL SPECIES	20	ENSGT00940000164108.a.a	ENSGT00940000177748	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000177903	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00940000178401	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a.p.c
Japanese Medaka HdrR	MODERN SPECIES	22	plppr2a (ENSORLG00000016517)	tlcd4b (ENSORLG00000024397)	CNN1 (ENSORLG00000016543)	ELOF1 (ENSORLG00000016547)	ENSORLG00000022907	tmem205 (ENSORLG00000019136)	rab3db (ENSORLG00000016555)	epor (ENSORLG00000016556)	ENSORLG00000027943	ZNF653 (ENSORLG00000016563)	ENSORLG00000021965	tspan35 (ENSORLG00000016577)	ENSORLG00000027017	zgc:158403 (ENSORLG00000016590)	ENSORLG00000016597	nfixb (ENSORLG00000016602) ##22	ENSORLG00000025802	ENSORLG00000022996	rad23aa (ENSORLG00000016606)	gng13b (ENSORLG00000016610)	traf7 (ENSORLG00000016625)	CASKIN1 (ENSORLG00000016641)	prpsap2 (ENSORLG00000016661)	ENSORLG00000016675	carhsp1 (ENSORLG00000027715)	nat15 (ENSORLG00000016682)	dnase1 (ENSORLG00000016693)	eci1 (ENSORLG00000016704)	ENSORLG00000016708	ENSORLG00000025723	ENSORLG00000016728
Chinese medaka	MODERN SPECIES	164																nfixb (ENSOSIG00000000126) ##22	rad23aa (ENSOSIG00000017706)	gng13b (ENSOSIG00000017704)
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00940000164108.a.a	ENSGT00940000177748	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000177692	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135
Cyprinodontoidei	ANCESTRAL SPECIES	22	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000177748	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000177692	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135
NAME_4	ANCESTRAL SPECIES	223														ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a.p
Mummichog	MODERN SPECIES	256														zgc:158403 (ENSFHEG00000021195)	GADD45GIP1 (ENSFHEG00000021155)	nfixb (ENSFHEG00000021127) ##22	ENSFHEG00000021073	gng13b (ENSFHEG00000021066)	traf7 (ENSFHEG00000021038)	CASKIN1 (ENSFHEG00000020926)	prpsap2 (ENSFHEG00000020914)	PPP1R9B (ENSFHEG00000020846)	carhsp1 (ENSFHEG00000020770)	nat15 (ENSFHEG00000020740)	dnase1 (ENSFHEG00000020706)	eci1 (ENSFHEG00000020682)	ENSFHEG00000020659	ENSFHEG00000020608	KAT7 (ENSFHEG00000020580)	aldh16a1 (ENSFHEG00000020489)
Sheepshead minnow	MODERN SPECIES	861													zgc:158403 (ENSCVAG00000019028)	GADD45GIP1 (ENSCVAG00000019035)	ENSCVAG00000019050	nfixb (ENSCVAG00000019107) ##22	rad23aa (ENSCVAG00000019119)
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000164108.a.a	ENSGT00940000177748	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000177692	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135
Poecilia	ANCESTRAL SPECIES	18	ENSGT00940000164108.a.a	ENSGT00940000177748	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000177692	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135
NAME_6	ANCESTRAL SPECIES	242														ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000177692	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135
Amazon molly	MODERN SPECIES	569														zgc:158403 (ENSPFOG00000000576)	GADD45GIP1 (ENSPFOG00000000856)	nfixb (ENSPFOG00000000936) ##22	ENSPFOG00000023393	rad23aa (ENSPFOG00000001145)	ENSPFOG00000001338	traf7 (ENSPFOG00000001530)	CASKIN1 (ENSPFOG00000001843)	prpsap2 (ENSPFOG00000002054)	PPP1R9B (ENSPFOG00000002243)	carhsp1 (ENSPFOG00000002443)	nat15 (ENSPFOG00000002500)	dnase1 (ENSPFOG00000002508)	eci1 (ENSPFOG00000002634)	ENSPFOG00000002706	ENSPFOG00000002720	ENSPFOG00000002748	ENSPFOG00000024146
Sailfin molly	MODERN SPECIES	287														zgc:158403 (ENSPLAG00000005332)	GADD45GIP1 (ENSPLAG00000005277)	nfixb (ENSPLAG00000005263) ##22	ENSPLAG00000005237	rad23aa (ENSPLAG00000005229)	gng13b (ENSPLAG00000005220)
Guppy	MODERN SPECIES	460	ELOF1 (ENSPREG00000013329)	tmem205 (ENSPREG00000013320)	rab3db (ENSPREG00000013304)	epor (ENSPREG00000013276)	swsap1 (ENSPREG00000013259)	ZNF653 (ENSPREG00000013250)	tspan35 (ENSPREG00000013235)	ENSPREG00000013223	ENSPREG00000013205	ENSPREG00000013194	ENSPREG00000013173	ENSPREG00000013150	zgc:158403 (ENSPREG00000013117)	GADD45GIP1 (ENSPREG00000013105)	ENSPREG00000013091	nfixb (ENSPREG00000012965) ##22	ENSPREG00000012891	gng13b (ENSPREG00000012874)	traf7 (ENSPREG00000012822)	CASKIN1 (ENSPREG00000012782)	prpsap2 (ENSPREG00000012731)	PPP1R9B (ENSPREG00000012698)	carhsp1 (ENSPREG00000012687)	nat15 (ENSPREG00000012671)	dnase1 (ENSPREG00000012662)	eci1 (ENSPREG00000012624)	ENSPREG00000012609	ENSPREG00000012600	ENSPREG00000012532	aldh16a1 (ENSPREG00000012471)	ENSPREG00000012446
Platyfish	MODERN SPECIES	7	rab3db (ENSXMAG00000025391)	epor (ENSXMAG00000021208)	swsap1 (ENSXMAG00000008790)	ZNF653 (ENSXMAG00000008783)	tspan35 (ENSXMAG00000008768)	cbln10 (ENSXMAG00000028947)	ENSXMAG00000029707	cbln10 (ENSXMAG00000028086)	ENSXMAG00000028339	cbln10 (ENSXMAG00000029806)	ENSXMAG00000028957	ENSXMAG00000027545	zgc:158403 (ENSXMAG00000014110)	ENSXMAG00000023690	GADD45GIP1 (ENSXMAG00000023533)	nfixb (ENSXMAG00000008754) ##22	ENSXMAG00000027577	rad23aa (ENSXMAG00000008741)	ENSXMAG00000024062	ENSXMAG00000022081	gng13b (ENSXMAG00000025352)	traf7 (ENSXMAG00000008722)	CASKIN1 (ENSXMAG00000008707)	prpsap2 (ENSXMAG00000021519)	PPP1R9B (ENSXMAG00000008680)	carhsp1 (ENSXMAG00000008676)	nat15 (ENSXMAG00000028330)	dnase1 (ENSXMAG00000008652)	eci1 (ENSXMAG00000021260)	ENSXMAG00000008636	tlcd5b (ENSXMAG00000025250)
Aplocheiloidei	ANCESTRAL SPECIES	148		ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h
Mangrove rivulus	MODERN SPECIES	278														zgc:158403 (ENSKMAG00000009335)	GADD45GIP1 (ENSKMAG00000009310)	nfixb (ENSKMAG00000009143) ##22	rad23aa (ENSKMAG00000009100)	gng13b (ENSKMAG00000009082)	traf7 (ENSKMAG00000009022)	CASKIN1 (ENSKMAG00000008915)
Turquoise killifish	MODERN SPECIES	46																ENSNFUG00015015461 ##22	RAD23AA (ENSNFUG00015015443)	GNG13 (ENSNFUG00015015431)	ENSNFUG00015015416	traf7 (ENSNFUG00015014319)	ENSNFUG00015014199
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a.p
Pomacentridae	ANCESTRAL SPECIES	31	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b.b ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b
Bicolor damselfish	MODERN SPECIES	1593															ENSSPAG00000007003	nfixb (ENSSPAG00000006947) ##22	rad23aa (ENSSPAG00000006891)	gng13b (ENSSPAG00000006873)
Pomacentridae_A	ANCESTRAL SPECIES	21	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b.b ##22	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000158833.a.a	ENSGT00950000182803.A.a.a	ENSGT00940000158025.a.a.b.h	ENSGT00940000157022	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a.p
Spiny chromis	MODERN SPECIES	420																nfixb (ENSAPOG00000013677) ##22	rad23aa (ENSAPOG00000013592)	gng13b (ENSAPOG00000013582)	PPP1R9B (ENSAPOG00000013561)	prpsap2 (ENSAPOG00000013530)
Amphiprion	ANCESTRAL SPECIES	25	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b.b ##22	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000158833.a.a	ENSGT00950000182803.A.a.a	ENSGT00940000158025.a.a.b.h	ENSGT00940000157022	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a.p
Orange clownfish	MODERN SPECIES	5	ENSAPEG00000017857	plppr2a (ENSAPEG00000017875)	ENSAPEG00000017900	ENSAPEG00000017910	tlcd4b (ENSAPEG00000017916)	CNN1 (ENSAPEG00000017940)	ELOF1 (ENSAPEG00000017975)	tmem205 (ENSAPEG00000017992)	rab3db (ENSAPEG00000018042)	epor (ENSAPEG00000018090)	swsap1 (ENSAPEG00000018119)	ZNF653 (ENSAPEG00000018138)	tspan35 (ENSAPEG00000018149)	zgc:158403 (ENSAPEG00000018165)	GADD45GIP1 (ENSAPEG00000018230)	nfixb (ENSAPEG00000018261) ##22	rad23aa (ENSAPEG00000018355)	gng13b (ENSAPEG00000018386)	PPP1R9B (ENSAPEG00000018401)	prpsap2 (ENSAPEG00000018413)	ENSAPEG00000018455	traf7 (ENSAPEG00000018481)	carhsp1 (ENSAPEG00000018550)	nat15 (ENSAPEG00000018564)	dnase1 (ENSAPEG00000018601)	eci1 (ENSAPEG00000018723)	ENSAPEG00000018755	ENSAPEG00000018965	ENSAPEG00000018975	aldh16a1 (ENSAPEG00000019025)	fthl31 (ENSAPEG00000019099)
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	2551																ENSAOCG00000017107 ##22	rnf11a (ENSAOCG00000001185)	HMOX1 (ENSAOCG00000017130)	ENSAOCG00000017146	ENSAOCG00000017161	NEU3 (ENSAOCG00000017168)
Clown anemonefish	MODERN SPECIES	843																nfixb (ENSAOCG00000024567) ##22	rad23aa (ENSAOCG00000024571)	gng13b (ENSAOCG00000024574)	PPP1R9B (ENSAOCG00000024577)	prpsap2 (ENSAOCG00000024582)	bcl2l10 (ENSAOCG00000024585)	trpm7 (ENSAOCG00000024599)	SPPL2A (ENSAOCG00000024613)	gnrhr2 (ENSAOCG00000024619)	ENSAOCG00000024620
Cichlidae	ANCESTRAL SPECIES	19	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a.o.a
Midas cichlid	MODERN SPECIES	638				plppr2a (ENSACIG00000010919)	tlcd4b (ENSACIG00000010943)	CNN1 (ENSACIG00000010970)	ELOF1 (ENSACIG00000011082)	tmem205 (ENSACIG00000011087)	rab3db (ENSACIG00000011157)	epor (ENSACIG00000011430)	ENSACIG00000011455	ZNF653 (ENSACIG00000011467)	tspan35 (ENSACIG00000011510)	zgc:158403 (ENSACIG00000011529)	ENSACIG00000011573	nfixb (ENSACIG00000011590) ##22	rad23aa (ENSACIG00000011618)	gng13b (ENSACIG00000011651)	traf7 (ENSACIG00000011681)	ENSACIG00000011737	prpsap2 (ENSACIG00000011755)	PPP1R9B (ENSACIG00000011792)	carhsp1 (ENSACIG00000012156)	nat15 (ENSACIG00000012165)	ENSACIG00000012178
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a.o.a.c.a
Nile tilapia	MODERN SPECIES	16	tlcd4b (ENSONIG00000035632)	CNN1 (ENSONIG00000008050)	ELOF1 (ENSONIG00000040997)	tmem205 (ENSONIG00000008046)	rab3db (ENSONIG00000008043)	epor (ENSONIG00000008041)	ENSONIG00000036100	ZNF653 (ENSONIG00000008038)	tspan35 (ENSONIG00000039133)	ENSONIG00000033699	ENSONIG00000033998	ENSONIG00000031627	zgc:158403 (ENSONIG00000006591)	GADD45GIP1 (ENSONIG00000006589)	ENSONIG00000033474	nfixb (ENSONIG00000006575) ##22	rad23a (ENSONIG00000006571)	gng13b (ENSONIG00000003306)	ENSONIG00000040240	ENSONIG00000040691	ENSONIG00000032927	ENSONIG00000027242	ENSONIG00000028373	ENSONIG00000029965	ENSONIG00000040140	ENSONIG00000035013	ENSONIG00000041191	traf7 (ENSONIG00000006566)	CASKIN1 (ENSONIG00000006560)	prpsap2 (ENSONIG00000006558)	PPP1R9B (ENSONIG00000006548)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	38	ENSGT00390000008812.b.b.b	ENSGT00530000064085.d	ENSGT00940000162682.B.b	ENSGT00950000182818.A.t	ENSGT00950000182818.A.s	ENSGT00980000198607	ENSGT00940000164511.C	ENSGT01060000248595.b.a.b.b.a.a.b	ENSGT00510000048192	ENSGT00940000160609.f	ENSGT00940000166981	ENSGT01060000248575.D.c.b.b.a.l	ENSGT00950000182841.a.o.a.c.a	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a.o.a.d
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	424	rpain (ENSNBRG00000015144)	cdk5r1a (ENSNBRG00000015130)	nsfa (ENSNBRG00000014850)	thraa (ENSNBRG00000013365)	dusp3b (ENSNBRG00000013098)	prl (ENSNBRG00000012705)	prl (ENSNBRG00000012633)	si:dkey-16p21.8 (ENSNBRG00000012621)	ENSNBRG00000012571	ENSNBRG00000012560	ENSNBRG00000012528	tnnt1 (ENSNBRG00000012511)	syt5a (ENSNBRG00000012503)	ENSNBRG00000012493	zgc:158403 (ENSNBRG00000012460)	nfixb (ENSNBRG00000012439) ##22	ENSNBRG00000012399 ##22	rad23aa (ENSNBRG00000012360)	gng13b (ENSNBRG00000012350)	ENSNBRG00000012344	ENSNBRG00000012310	prpsap2 (ENSNBRG00000012288)	PPP1R9B (ENSNBRG00000012225)	carhsp1 (ENSNBRG00000012209)	nat15 (ENSNBRG00000012182)	dnase1 (ENSNBRG00000012151)	eci1 (ENSNBRG00000012129)
Lyretail cichlid	MODERN SPECIES	424	cdk5r1a (ENSNBRG00000015130)	nsfa (ENSNBRG00000014850)	thraa (ENSNBRG00000013365)	dusp3b (ENSNBRG00000013098)	prl (ENSNBRG00000012705)	prl (ENSNBRG00000012633)	si:dkey-16p21.8 (ENSNBRG00000012621)	ENSNBRG00000012571	ENSNBRG00000012560	ENSNBRG00000012528	tnnt1 (ENSNBRG00000012511)	syt5a (ENSNBRG00000012503)	ENSNBRG00000012493	zgc:158403 (ENSNBRG00000012460)	nfixb (ENSNBRG00000012439) ##22	ENSNBRG00000012399 ##22	rad23aa (ENSNBRG00000012360)	gng13b (ENSNBRG00000012350)	ENSNBRG00000012344	ENSNBRG00000012310	prpsap2 (ENSNBRG00000012288)	PPP1R9B (ENSNBRG00000012225)	carhsp1 (ENSNBRG00000012209)	nat15 (ENSNBRG00000012182)	dnase1 (ENSNBRG00000012151)	eci1 (ENSNBRG00000012129)
Haplochromini	ANCESTRAL SPECIES	57	ENSGT00390000008812.b.b.b	ENSGT00530000064085.d	ENSGT00940000162682.B.b	ENSGT00950000182818.A.t	ENSGT00950000182818.A.s	ENSGT00980000198607	ENSGT00940000164511.C	ENSGT01060000248595.b.a.b.b.a.a.b	ENSGT00510000048192	ENSGT00940000160609.f	ENSGT00940000166981	ENSGT01060000248575.D.c.b.b.a.l	ENSGT00950000182841.a.o.a.c.a.a	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b.i	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT01100000263556.a.a.q.d.u.b
Burton s mouthbrooder	MODERN SPECIES	591											pih1d1 (ENSHBUG00000016900)	tnnt1 (ENSHBUG00000016829)	syt5a (ENSHBUG00000016726)	zgc:158403 (ENSHBUG00000016674)	ENSHBUG00000000805	nfixb (ENSHBUG00000016552) ##22	rad23aa (ENSHBUG00000016388)	gng13b (ENSHBUG00000016306)	traf7 (ENSHBUG00000016296)	CASKIN1 (ENSHBUG00000016233)	ENSHBUG00000016215	prpsap2 (ENSHBUG00000016195)	PPP1R9B (ENSHBUG00000016148)	carhsp1 (ENSHBUG00000016107)	nat15 (ENSHBUG00000016061)	ENSHBUG00000016012
Haplochromini_A	ANCESTRAL SPECIES	43	ENSGT00390000006416	ENSGT00390000008812.b.b.b	ENSGT00530000064085.d	ENSGT00940000162682.B.b	ENSGT00950000182818.A.t	ENSGT00950000182818.A.s	ENSGT00980000198607	ENSGT00940000164511.C	ENSGT01060000248595.b.a.b.b.a.a.b	ENSGT00510000048192	ENSGT00940000160609.f	ENSGT00940000166981	ENSGT01060000248575.D.c.b.b.a.l	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b.i	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT01100000263556.a.a.q.d.u.b	ENSGT00950000182846.b	ENSGT00390000005678.m
P. nyererei	MODERN SPECIES	554								ENSPNYG00000014604	pih1d1 (ENSPNYG00000014629)	tnnt1 (ENSPNYG00000014717)	syt5a (ENSPNYG00000014734)	ENSPNYG00000014855	ENSPNYG00000015051	zgc:158403 (ENSPNYG00000015077)	ENSPNYG00000015111	nfixb (ENSPNYG00000015176) ##22	rad23aa (ENSPNYG00000015249)	gng13b (ENSPNYG00000015277)	traf7 (ENSPNYG00000015302)	CASKIN1 (ENSPNYG00000015357)	prpsap2 (ENSPNYG00000015400)	PPP1R9B (ENSPNYG00000015441)	carhsp1 (ENSPNYG00000015464)	nat15 (ENSPNYG00000015487)
Haplochromini_B	ANCESTRAL SPECIES	31	ENSGT00530000064085.d	ENSGT00940000162682.B.b	ENSGT00950000182818.A.t	ENSGT00950000182818.A.s	ENSGT00980000198607	ENSGT00940000164511.C	ENSGT01060000248595.b.a.b.b.a.a.b	ENSGT00510000048192	ENSGT00940000160609.f	ENSGT00940000166981	ENSGT01060000248575.D.c.b.b.a.l	ENSGT00950000182841.a.o.a.c.a.a.a.a	ENSGT00950000182841.a.o.a.c.a.a.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b.i	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00940000158025.a.a.b.g.a	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a.f	ENSGT00940000158833.a.a.e	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT01100000263556.a.a.q.d.u.b
Eastern happy	DUPLICATION
Eastern happy	MODERN SPECIES	16	si:dkey-16p21.8 (ENSACLG00000007348)	ENSACLG00000007357	ENSACLG00000007398	ENSACLG00000007402	ENSACLG00000008067	ENSACLG00000008092	ENSACLG00000008095	ENSACLG00000008105	pih1d1 (ENSACLG00000008577)	tnnt1 (ENSACLG00000008610)	syt5a (ENSACLG00000008620)	ENSACLG00000008628	ENSACLG00000008635	zgc:158403 (ENSACLG00000008652)	GADD45GIP1 (ENSACLG00000008696)	nfixb (ENSACLG00000008709) ##22	rad23aa (ENSACLG00000008864)	gng13b (ENSACLG00000008871)	traf7 (ENSACLG00000008880)	CASKIN1 (ENSACLG00000008934)	ENSACLG00000009011	ENSACLG00000009015	prpsap2 (ENSACLG00000009020)	PPP1R9B (ENSACLG00000009052)	PPP1R9B (ENSACLG00000009091)	carhsp1 (ENSACLG00000009149)	nat15 (ENSACLG00000009190)	ENSACLG00000009216	dnase1 (ENSACLG00000009226)	eci1 (ENSACLG00000009445)	dnase1 (ENSACLG00000009478)
Eastern happy	DUPLICATION
Eastern happy	MODERN SPECIES	116																ENSACLG00000000036 ##22	rad23aa (ENSACLG00000019406)
Eastern happy	MODERN SPECIES	186																ENSACLG00000006585 ##22
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1107	hoxb13a (ENSMZEG00005023039)	eve1 (ENSMZEG00005023036)	ENSMZEG00005023035	ENSMZEG00005023034	ENSMZEG00005023033	ENSMZEG00005023032	ENSMZEG00005023030	ENSMZEG00005023029	pih1d1 (ENSMZEG00005023024)	tnnt1 (ENSMZEG00005023012)	syt5a (ENSMZEG00005023007)	ENSMZEG00005023004	ENSMZEG00005023003	zgc:158403 (ENSMZEG00005023001)	GADD45GIP1 (ENSMZEG00005023000)	nfixb (ENSMZEG00005022977) ##22	rad23aa (ENSMZEG00005022970)	gng13b (ENSMZEG00005022966)	traf7 (ENSMZEG00005022963)	CASKIN1 (ENSMZEG00005022954)	ENSMZEG00005022951	prpsap2 (ENSMZEG00005022950)	PPP1R9B (ENSMZEG00005022946)	carhsp1 (ENSMZEG00005022941)	nat15 (ENSMZEG00005022929)	ENSMZEG00005022926	ENSMZEG00005022917	ENSMZEG00005022908	ENSMZEG00005022882	prrg2 (ENSMZEG00005022870)	rras (ENSMZEG00005022866)
Zebra mbuna	MODERN SPECIES	347																ENSMZEG00005026079 ##22	rnf11a (ENSMZEG00005026077)	HMOX1 (ENSMZEG00005026075)	ENSMZEG00005026072	ENSMZEG00005026071
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.g.b	ENSGT00940000158025.a.a.b.g.a	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000177903	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00940000158025.a.a.b.g.b	ENSGT00940000158025.a.a.b.g.a	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c
Turbot	MODERN SPECIES	10	ENSSMAG00000002077	nfil3-6 (ENSSMAG00000002075)	ENSSMAG00000002069	plppr2a (ENSSMAG00000002052)	tlcd4b (ENSSMAG00000002042)	ENSSMAG00000002000	ENSSMAG00000002029	tmem205 (ENSSMAG00000001995)	rab3db (ENSSMAG00000029819)	epor (ENSSMAG00000026470)	ENSSMAG00000001975	ENSSMAG00000001931	tspan35 (ENSSMAG00000001906)	zgc:158403 (ENSSMAG00000001873)	ENSSMAG00000001852	nfixb (ENSSMAG00000001640) ##22	ENSSMAG00000001612	gng13b (ENSSMAG00000001610)	ENSSMAG00000001496	ENSSMAG00000001302	ENSSMAG00000021833	ENSSMAG00000001260	ENSSMAG00000001153	carhsp1 (ENSSMAG00000001136)	nat15 (ENSSMAG00000001113)	eci1 (ENSSMAG00000001081)	ENSSMAG00000000865	ENSSMAG00000000851	ENSSMAG00000024171	ENSSMAG00000018027	ENSSMAG00000018008
Tongue sole	MODERN SPECIES	8	clpp (ENSCSEG00000013747)	si:ch211-286b5.5 (ENSCSEG00000013758)	carm1 (ENSCSEG00000013769)	yipf2 (ENSCSEG00000013806)	timm29 (ENSCSEG00000013835)	ENSCSEG00000013845	CA10 (ENSCSEG00000013864)	rpl23 (ENSCSEG00000013885)	scpep1 (ENSCSEG00000013907)	ENSCSEG00000013938	coil (ENSCSEG00000013943)	rab11fip4a (ENSCSEG00000013945)	ENSCSEG00000013959	igf2bp1 (ENSCSEG00000013968)	prr15la (ENSCSEG00000013984)	nfixb (ENSCSEG00000014004) ##22	ENSCSEG00000014072	gng13b (ENSCSEG00000014087)	traf7 (ENSCSEG00000014096)	CASKIN1 (ENSCSEG00000014114)	ENSCSEG00000014150	ddx5 (ENSCSEG00000014167)	smurf2 (ENSCSEG00000014278)	ENSCSEG00000014318	kpna2 (ENSCSEG00000014324)	BPTF (ENSCSEG00000014334)	grb2b (ENSCSEG00000014367)	ENSCSEG00000014381	hmgxb4a (ENSCSEG00000014399)	ankrd54 (ENSCSEG00000014415)	foxred2 (ENSCSEG00000014468)
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.g.b	ENSGT00940000158025.a.a.b.g.a	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135
Seriola	ANCESTRAL SPECIES	23	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000177748	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.g.b	ENSGT00940000158025.a.a.b.g.a	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135
Yellowtail amberjack	MODERN SPECIES	2955	ENSSLDG00000016810	ENSSLDG00000016798	nfil3-6 (ENSSLDG00000016791)	plppr2a (ENSSLDG00000016778)	tlcd4b (ENSSLDG00000016741)	CNN1 (ENSSLDG00000016715)	ELOF1 (ENSSLDG00000016688)	tmem205 (ENSSLDG00000016680)	rab3db (ENSSLDG00000016670)	epor (ENSSLDG00000016651)	swsap1 (ENSSLDG00000016636)	ZNF653 (ENSSLDG00000016609)	tspan35 (ENSSLDG00000016571)	zgc:158403 (ENSSLDG00000016516)	ENSSLDG00000016491	nfixb (ENSSLDG00000016469) ##22	rad23aa (ENSSLDG00000016445)	gng13b (ENSSLDG00000016435)	traf7 (ENSSLDG00000016373)	CASKIN1 (ENSSLDG00000016331)	ENSSLDG00000016312	prpsap2 (ENSSLDG00000016275)	PPP1R9B (ENSSLDG00000016234)	carhsp1 (ENSSLDG00000016209)	nat15 (ENSSLDG00000016193)	dnase1 (ENSSLDG00000016089)	eci1 (ENSSLDG00000016059)	ENSSLDG00000015999	ENSSLDG00000015890	ENSSLDG00000015877	ENSSLDG00000015812
Greater amberjack	MODERN SPECIES	50	ENSSDUG00000008485	nfil3-6 (ENSSDUG00000008478)	ENSSDUG00000008471	plppr2a (ENSSDUG00000008460)	tlcd4b (ENSSDUG00000008426)	CNN1 (ENSSDUG00000008396)	ELOF1 (ENSSDUG00000008380)	tmem205 (ENSSDUG00000008370)	rab3db (ENSSDUG00000008347)	epor (ENSSDUG00000008260)	swsap1 (ENSSDUG00000008251)	ZNF653 (ENSSDUG00000008237)	tspan35 (ENSSDUG00000008214)	GADD45GIP1 (ENSSDUG00000008208)	zgc:158403 (ENSSDUG00000008162)	nfixb (ENSSDUG00000008002) ##22	rad23aa (ENSSDUG00000007946)	gng13b (ENSSDUG00000007936)	traf7 (ENSSDUG00000007870)	CASKIN1 (ENSSDUG00000007858)	ENSSDUG00000007838	prpsap2 (ENSSDUG00000007808)	PPP1R9B (ENSSDUG00000007733)	carhsp1 (ENSSDUG00000007709)	nat15 (ENSSDUG00000007683)	dnase1 (ENSSDUG00000007677)	eci1 (ENSSDUG00000007662)	ENSSDUG00000007480	ENSSDUG00000007430	ENSSDUG00000007417	ENSSDUG00000007362
Barramundi perch	MODERN SPECIES	138	ENSLCAG00010016366	nfil3-6 (ENSLCAG00010016364)	ENSLCAG00010016362	plppr2a (ENSLCAG00010016352)	tlcd4b (ENSLCAG00010016346)	CNN1 (ENSLCAG00010016341)	ELOF1 (ENSLCAG00010016336)	tmem205 (ENSLCAG00010016331)	rab3db (ENSLCAG00010016326)	epor (ENSLCAG00010016321)	ENSLCAG00010016319	ENSLCAG00010016314	tspan35 (ENSLCAG00010016310)	zgc:158403 (ENSLCAG00010016282)	GADD45GIP1 (ENSLCAG00010016269)	nfixb (ENSLCAG00010016251) ##22	rad23aa (ENSLCAG00010016240)	gng13b (ENSLCAG00010016239)	ENSLCAG00010016237	traf7 (ENSLCAG00010015651)	CASKIN1 (ENSLCAG00010015564)	prpsap2 (ENSLCAG00010015514)	PPP1R9B (ENSLCAG00010015503)
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00940000181841	ENSGT00950000182969.B.c.a.a.b.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a	ENSGT01090000260030.a.b.b.b	ENSGT00400000024346	ENSGT00940000164067.A	ENSGT01030000234627.a.a.d.b	ENSGT00940000164729.b	ENSGT00940000164729.a.a.c	ENSGT00390000015278	ENSGT00730000111140	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a
Zig-zag eel	MODERN SPECIES	22	ENSMAMG00000025353	ENSMAMG00000009604	ENSMAMG00000009624	ENSMAMG00000009638	ENSMAMG00000025259	ENSMAMG00000027231	ENSMAMG00000009774	ENSMAMG00000024873	ENSMAMG00000027470	ENSMAMG00000025471	ENSMAMG00000027329	ENSMAMG00000015419	ENSMAMG00000024804	zgc:158403 (ENSMAMG00000015554)	ENSMAMG00000024694	nfixb (ENSMAMG00000015640) ##22	ENSMAMG00000015738	gng13b (ENSMAMG00000015748)	ENSMAMG00000015785	ENSMAMG00000015908	ENSMAMG00000015972	ENSMAMG00000016006	ENSMAMG00000028591	carhsp1 (ENSMAMG00000025583)	ENSMAMG00000027969	nat15 (ENSMAMG00000016098)	dnase1 (ENSMAMG00000016116)	eci1 (ENSMAMG00000016125)	ENSMAMG00000016147	ENSMAMG00000027373	ENSMAMG00000016988
Anabantoidei	ANCESTRAL SPECIES	25	ENSGT00940000153840.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a	ENSGT01090000260030.a.b.b.b	ENSGT00400000024346	ENSGT00940000164067.A	ENSGT01030000234627.a.a.d.b	ENSGT00940000164729.b	ENSGT00940000164729.a.a.c	ENSGT00390000015278	ENSGT00730000111140	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a.u
Climbing perch	MODERN SPECIES	21	cyt1 (ENSATEG00000017081)	krtt1c19e (ENSATEG00000017048)	si:dkeyp-113d7.1 (ENSATEG00000017027)	ENSATEG00000017017	prf1.3 (ENSATEG00000016901)	stx1b (ENSATEG00000016855)	ENSATEG00000016825	ENSATEG00000016814	ENSATEG00000016804	ENSATEG00000016788	ENSATEG00000026631	ENSATEG00000025211	ENSATEG00000025625	zgc:158403 (ENSATEG00000016676)	ENSATEG00000029549	nfixb (ENSATEG00000016529) ##22	ENSATEG00000016456	gng13b (ENSATEG00000016450)	ENSATEG00000016314	ENSATEG00000029764	ENSATEG00000016237	ENSATEG00000016183	carhsp1 (ENSATEG00000016159)	nat15 (ENSATEG00000027214)	dnase1 (ENSATEG00000015946)	dnase1 (ENSATEG00000025948)	eci1 (ENSATEG00000015868)	ENSATEG00000015630	ENSATEG00000015589	ENSATEG00000015531	ENSATEG00000015469
Siamese fighting fish	MODERN SPECIES	19	prl (ENSBSLG00000007481)	ENSBSLG00000007085	ENSBSLG00000006772	pih1d1 (ENSBSLG00000006541)	tnnt1 (ENSBSLG00000006475)	ENSBSLG00000006454	syt5a (ENSBSLG00000006364)	ENSBSLG00000006081	ENSBSLG00000006074	ENSBSLG00000006050	aldh16a1 (ENSBSLG00000006038)	ENSBSLG00000005092	ENSBSLG00000004587	zgc:158403 (ENSBSLG00000004542)	GADD45GIP1 (ENSBSLG00000004524)	nfixb (ENSBSLG00000004452) ##22	rad23aa (ENSBSLG00000004426)	gng13b (ENSBSLG00000004424)	traf7 (ENSBSLG00000004009)	CASKIN1 (ENSBSLG00000003714)	prpsap2 (ENSBSLG00000002906)	PPP1R9B (ENSBSLG00000002892)	carhsp1 (ENSBSLG00000002888)	nat15 (ENSBSLG00000002882)	dnase1 (ENSBSLG00000002865)	eci1 (ENSBSLG00000002855)	ENSBSLG00000002701	eif1 (ENSBSLG00000002673)	mfsd11 (ENSBSLG00000002450)	ENSBSLG00000002272	ubald2 (ENSBSLG00000002204)
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a
Tetraodontidae	ANCESTRAL SPECIES	161														ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a
Fugu	MODERN SPECIES	17	DLX3 (ENSTRUG00000024182)	PSMD11 (ENSTRUG00000007262)	rpain (ENSTRUG00000007150)	cdk5r1a (ENSTRUG00000007028)	nsfa (ENSTRUG00000006590)	thraa (ENSTRUG00000005981)	ENSTRUG00000005865	prl (ENSTRUG00000005607)	ENSTRUG00000032437	ENSTRUG00000027169	ENSTRUG00000030079	ENSTRUG00000028002	col1a1a (ENSTRUG00000013913)	zgc:158403 (ENSTRUG00000013806)	GADD45GIP1 (ENSTRUG00000013786)	nfixb (ENSTRUG00000022784) ##22	rad23aa (ENSTRUG00000013485)	gng13b (ENSTRUG00000020004)	traf7 (ENSTRUG00000013372)	CASKIN1 (ENSTRUG00000013272)	prpsap2 (ENSTRUG00000013190)	PPP1R9B (ENSTRUG00000013089)	ENSTRUG00000031766	CA10 (ENSTRUG00000012987)	ENSTRUG00000020552	rpl23 (ENSTRUG00000032153)	ENSTRUG00000025624	smarce1 (ENSTRUG00000012899)	timm29 (ENSTRUG00000012889)	yipf2 (ENSTRUG00000012788)	carm1 (ENSTRUG00000012690)
Tetraodon	MODERN SPECIES	26	pyya (ENSTNIG00000011155)	ENSTNIG00000011156	RARA (ENSTNIG00000011157)	nsfa (ENSTNIG00000011158)	prl (ENSTNIG00000011159)	DUSP3 (ENSTNIG00000011160)	CDK5R1 (ENSTNIG00000011161)	THRA (ENSTNIG00000011162)	rpain (ENSTNIG00000011163)	PSMD11 (ENSTNIG00000011164)	DLX3 (ENSTNIG00000011165)	dlx4a (ENSTNIG00000011166)	nags (ENSTNIG00000011167)	col1a1a (ENSTNIG00000011168)	zgc:158403 (ENSTNIG00000011169)	nfixb (ENSTNIG00000011170) ##22	traf7 (ENSTNIG00000014016)	CASKIN1 (ENSTNIG00000014015)	prpsap2 (ENSTNIG00000014014)	PPP1R9B (ENSTNIG00000014013)	CA10 (ENSTNIG00000014012)	rpl23 (ENSTNIG00000014011)	ENSTNIG00000014010	smarce1 (ENSTNIG00000014009)	carm1 (ENSTNIG00000014008)	clpp (ENSTNIG00000014007)	ENSTNIG00000014006	ENSTNIG00000014005	ENSTNIG00000014004	pex12 (ENSTNIG00000014003)	HDAC5 (ENSTNIG00000014002)
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	362	ELOF1 (ENSLBEG00000007448)	CNN1 (ENSLBEG00000007408)	tlcd4b (ENSLBEG00000007375)	plppr2a (ENSLBEG00000007305)	ENSLBEG00000007288	nfil3-6 (ENSLBEG00000007261)	ENSLBEG00000007245	ENSLBEG00000007224	ENSLBEG00000007161	SLC44A2 (ENSLBEG00000007041)	gcdhb (ENSLBEG00000006907)	ENSLBEG00000006869	farsa (ENSLBEG00000006757)	zgc:158403 (ENSLBEG00000006612)	GADD45GIP1 (ENSLBEG00000006709)	nfixb (ENSLBEG00000006366) ##22
Ballan wrasse	MODERN SPECIES	287																NFIX (ENSLBEG00000021105) ##22	rnf11a (ENSLBEG00000021032)	HMOX1 (ENSLBEG00000021015)	ENSLBEG00000020993	ENSLBEG00000020977	NEU3 (ENSLBEG00000020961)	NEU3 (ENSLBEG00000020949)	NEU3 (ENSLBEG00000020937)	NEU3 (ENSLBEG00000020919)	ENSLBEG00000020905	ENSLBEG00000020889	fdx2 (ENSLBEG00000020878)	s1pr5b (ENSLBEG00000020859)	keap1b (ENSLBEG00000020837)	ENSLBEG00000020827	CDKN2D (ENSLBEG00000020818)
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00940000177748	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000177903	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	26	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000177903	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a
Large yellow croaker	MODERN SPECIES	483	nfil3-6 (ENSLCRG00005012439)	ENSLCRG00005012438	plppr2a (ENSLCRG00005012435)	tlcd4b (ENSLCRG00005012428)	CNN1 (ENSLCRG00005012426)	ELOF1 (ENSLCRG00005012425)	ENSLCRG00005012424	tmem205 (ENSLCRG00005012421)	rab3db (ENSLCRG00005012418)	epor (ENSLCRG00005012417)	ENSLCRG00005012416	ZNF653 (ENSLCRG00005012413)	tspan35 (ENSLCRG00005012412)	zgc:158403 (ENSLCRG00005011772)	GADD45GIP1 (ENSLCRG00005011758)	nfixb (ENSLCRG00005011655) ##22	rad23aa (ENSLCRG00005011642)	gng13b (ENSLCRG00005011639)	traf7 (ENSLCRG00005011514)	CASKIN1 (ENSLCRG00005011499)	prpsap2 (ENSLCRG00005011362)	PPP1R9B (ENSLCRG00005011351)	prl (ENSLCRG00005011347)	ENSLCRG00005011284	ENSLCRG00005009815	pih1d1 (ENSLCRG00005009809)	tnnt1 (ENSLCRG00005009749)	ENSLCRG00005009742	TRAPPC14 (ENSLCRG00005009734)	zgc:152891 (ENSLCRG00005009733)	rap1gap2b (ENSLCRG00005009730)
European seabass	MODERN SPECIES	21	ENSDLAG00005012280	ENSDLAG00005033028	ENSDLAG00005029066	rogdi (ENSDLAG00005012482)	glyr1 (ENSDLAG00005012650)	ppl (ENSDLAG00005012813)	ENSDLAG00005014496	ENSDLAG00005014569	ENSDLAG00005005966	ENSDLAG00005015190	ENSDLAG00005015218	ENSDLAG00005028178	ENSDLAG00005016018	zgc:158403 (ENSDLAG00005016067)	ENSDLAG00005016834	nfixb (ENSDLAG00005016844) ##22	ENSDLAG00005017143	ENSDLAG00005030711	ENSDLAG00005027870	gng13b (ENSDLAG00005012217)	ENSDLAG00005017210	ENSDLAG00005018448	ENSDLAG00005018556	ENSDLAG00005018836	carhsp1 (ENSDLAG00005018917)	nat15 (ENSDLAG00005018922)	dnase1 (ENSDLAG00005027246)	eci1 (ENSDLAG00005018955)	ENSDLAG00005018972	ENSDLAG00005019012	ENSDLAG00005019052
Gilthead seabream	MODERN SPECIES	15	ENSSAUG00010023059	nfil3-6 (ENSSAUG00010023058)	ENSSAUG00010023053	plppr2a (ENSSAUG00010023047)	tlcd4b (ENSSAUG00010023044)	CNN1 (ENSSAUG00010023043)	elof1 (ENSSAUG00010023042)	tmem205 (ENSSAUG00010023041)	rab3db (ENSSAUG00010023040)	epor (ENSSAUG00010023038)	ENSSAUG00010023035	ZNF653 (ENSSAUG00010023034)	tspan35 (ENSSAUG00010023033)	zgc:158403 (ENSSAUG00010022174)	GADD45GIP1 (ENSSAUG00010022162)	nfixb (ENSSAUG00010022112) ##22	rad23aa (ENSSAUG00010022110)	gng13b (ENSSAUG00010022109)	traf7 (ENSSAUG00010021854)	ENSSAUG00010021850	CASKIN1 (ENSSAUG00010021840)	prpsap2 (ENSSAUG00010021561)	PPP1R9B (ENSSAUG00010021547)	ENSSAUG00010021543	carhsp1 (ENSSAUG00010021542)	nat15 (ENSSAUG00010021540)	dnase1 (ENSSAUG00010021537)	eci1 (ENSSAUG00010021536)	ENSSAUG00010021370	ENSSAUG00010021365	ENSSAUG00010021362
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000177748	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00950000183197.a	ENSGT00940000160534	ENSGT00390000016209	ENSGT00940000155311.A.a	ENSGT00940000156584.e.b	ENSGT00940000177154	ENSGT00940000173491	ENSGT00390000006679.b	ENSGT00390000005602	ENSGT00940000165079.b	ENSGT00940000158951.f	ENSGT00530000063301.a.a.c.b	ENSGT00390000006416	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a
Lumpfish	MODERN SPECIES	23	cyb561 (ENSCLMG00005006257)	HDAC5 (ENSCLMG00005006315)	pex12 (ENSCLMG00005011570)	ENSCLMG00005011571	col1a1a (ENSCLMG00005011583)	ENSCLMG00005013038	coa3b (ENSCLMG00005013039)	ENSCLMG00005013041	nags (ENSCLMG00005013045)	ENSCLMG00005013047	DLX3 (ENSCLMG00005013048)	PSMD11 (ENSCLMG00005013049)	rpain (ENSCLMG00005013053)	zgc:158403 (ENSCLMG00005013061)	ENSCLMG00005013906	nfixb (ENSCLMG00005013907) ##22	rad23aa (ENSCLMG00005013909)	gng13b (ENSCLMG00005013910)	traf7 (ENSCLMG00005013926)	ENSCLMG00005016504	prpsap2 (ENSCLMG00005016507)	PPP1R9B (ENSCLMG00005017355)	carhsp1 (ENSCLMG00005017357)	nat15 (ENSCLMG00005017358)	dnase1 (ENSCLMG00005017359)	eci1 (ENSCLMG00005017360)	ENSCLMG00005017363	ENSCLMG00005017424	ENSCLMG00005017431	aldh16a1 (ENSCLMG00005018338)	fthl27 (ENSCLMG00005018352)
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00940000164108.a.a	ENSGT00940000177748	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135	ENSGT00950000182841.a
Channel bull blenny	MODERN SPECIES	22	nfil3-6 (ENSCGOG00000006111)	ENSCGOG00000006113	ENSCGOG00000006114	plppr2a (ENSCGOG00000006116)	tlcd4b (ENSCGOG00000006135)	CNN1 (ENSCGOG00000006139)	elof1 (ENSCGOG00000006142)	tmem205 (ENSCGOG00000006151)	rab3db (ENSCGOG00000006158)	epor (ENSCGOG00000006177)	ENSCGOG00000006199	ZNF653 (ENSCGOG00000006201)	tspan35 (ENSCGOG00000006203)	zgc:158403 (ENSCGOG00000006219)	GADD45GIP1 (ENSCGOG00000006873)	nfixb (ENSCGOG00000006878) ##22	ENSCGOG00000006894	rad23aa (ENSCGOG00000006895)	gng13b (ENSCGOG00000006896)	traf7 (ENSCGOG00000006923)	CASKIN1 (ENSCGOG00000008385)	prpsap2 (ENSCGOG00000008395)	PPP1R9B (ENSCGOG00000008703)	carhsp1 (ENSCGOG00000008938)	nat15 (ENSCGOG00000008943)	dnase1 (ENSCGOG00000008952)	eci1 (ENSCGOG00000008964)	ENSCGOG00000008978	ENSCGOG00000009114	ENSCGOG00000009150	aldh16a1 (ENSCGOG00000010469)
Pike perch	MODERN SPECIES	35	srsf2b (ENSSLUG00000006296)	mfsd11 (ENSSLUG00000006270)	fus (ENSSLUG00000006229)	ENSSLUG00000006213	ENSSLUG00000006204	ENSSLUG00000006196	ENSSLUG00000006159	ubald2 (ENSSLUG00000006149)	ENSSLUG00000006147	amdhd2 (ENSSLUG00000006127)	ENSSLUG00000006114	ENSSLUG00000006105	zgc:158403 (ENSSLUG00000004664)	GADD45GIP1 (ENSSLUG00000004605)	ENSSLUG00000004599	nfixb (ENSSLUG00000004549) ##22	rad23aa (ENSSLUG00000004523)	gng13b (ENSSLUG00000004520)	traf7 (ENSSLUG00000002610)	CASKIN1 (ENSSLUG00000002493)	ENSSLUG00000002487	prpsap2 (ENSSLUG00000002295)	PPP1R9B (ENSSLUG00000002269)	carhsp1 (ENSSLUG00000002258)	nat15 (ENSSLUG00000002249)	dnase1 (ENSSLUG00000002244)	eci1 (ENSSLUG00000002233)	pacrg (ENSSLUG00000002229)	ENSSLUG00000002136	ENSSLUG00000002121	ENSSLUG00000002119
Protacanthopterygii	ANCESTRAL SPECIES	5	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000177903	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00940000164506.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000177692	ENSGT00390000012078.a.b	ENSGT00990000206076	ENSGT00390000000483.a.b	ENSGT00940000164982.b	ENSGT00940000159130	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000155858.f	ENSGT00940000155159.C	ENSGT00940000155774.b	ENSGT00940000162350.b.a	ENSGT00940000162350.b.b	ENSGT00950000182961.a.b.b	ENSGT00940000157534.a.b
Northern pike	MODERN SPECIES	10	ENSELUG00000009901	nfil3-6 (ENSELUG00000001207)	ENSELUG00000009879	plppr2a (ENSELUG00000009874)	tlcd4b (ENSELUG00000009838)	CNN1 (ENSELUG00000009816)	tmem205 (ENSELUG00000025829)	rab3db (ENSELUG00000025692)	epor (ENSELUG00000009773)	swsap1 (ENSELUG00000001292)	ZNF653 (ENSELUG00000009759)	tspan35 (ENSELUG00000009737)	ENSELUG00000000355	zgc:158403 (ENSELUG00000009679)	gadd45gip1 (ENSELUG00000000354)	nfixb (ENSELUG00000009601) ##22	ENSELUG00000034258	rad23aa (ENSELUG00000009588)	ENSELUG00000009561	ENSELUG00000027960	ddx47 (ENSELUG00000009495)	ENSELUG00000009465	wbp11 (ENSELUG00000009477)	ENSELUG00000009458	mgp (ENSELUG00000025140)	ENSELUG00000009429	ENSELUG00000009415	ENSELUG00000009404	ENSELUG00000027548	emp1 (ENSELUG00000034196)	GSG1 (ENSELUG00000009349)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES		ENSGT00940000159680.e	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b.b	ENSGT00940000160315.c.b.a	ENSGT00940000177903	ENSGT00940000160257.e.b	ENSGT00940000164506.b.b.b	ENSGT00940000164506.a.b.a	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.b ##22	ENSGT00390000012078.a.b.d.a.b	ENSGT00940000177692	ENSGT00390000012078.a.b.d.b	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.a ##22	ENSGT00390000012078.a.b.d.a.a	ENSGT00940000155159.C.cd	ENSGT00940000155774.b.b	ENSGT01010000222553	ENSGT00710000107036.a.a.b.a.a	ENSGT00390000003753.h.a	ENSGT00390000013260.A.b.b.p.a.a	ENSGT00950000182961.a.b.b.d	ENSGT00940000157534.a.b.b.b.a	ENSGT00940000155083.a.a	ENSGT00950000182696.A.a.a.b.a	ENSGT01000000216011.c	ENSGT00940000157896.m.a	ENSGT01050000244814.a.a.a.b.b.a	ENSGT00940000157896.m.b
Huchen	MODERN SPECIES	3184													ENSHHUG00000009874	zgc:158403 (ENSHHUG00000009892)	ENSHHUG00000009936	nfixb (ENSHHUG00000009953) ##22
Salmoninae_a	ANCESTRAL SPECIES	576																ENSGT00950000182916.a.b.a.a.a.b.a.b.m.a ##22	ENSGT00390000012078.a.b.d.a.a
Salmo	ANCESTRAL SPECIES	53	ENSGT00940000164108.a.a.b	ENSGT01060000251158	ENSGT00940000169385.a	ENSGT00940000158145.b.h.b	ENSGT01010000222313.A.b.a.c.e	ENSGT00940000159680.e.b	ENSGT00390000000053.b.s.b	ENSGT00390000016298.a.h	ENSGT00940000157552.s.b.b.b	ENSGT00940000160315.c.a	ENSGT00940000160315.c.b.b	ENSGT00940000160257.e.b.a	ENSGT00940000164506.b.b.b	ENSGT00950000182917.a.b.b.d	ENSGT00390000013719.n	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.a ##22	ENSGT00390000012078.a.b.d.a.a	ENSGT00940000155159.C.cd.a	ENSGT00940000155774.b.a	ENSGT00940000162350.b.b.a	ENSGT00710000107036.a.a.b.a.b	ENSGT00390000003753.h.b	ENSGT00390000013260.A.b.b.p.a.b	ENSGT00390000013260.A.b.b.o	ENSGT00950000182961.a.b.b.c	ENSGT00940000157534.a.b.a.b	ENSGT00940000155083.a.b	ENSGT01000000214705.d	ENSGT00950000182696.A.a.a.b.b	ENSGT01050000244814.a.a.a.b.a	ENSGT00940000155964.g.c.b.a
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000093937	NFIL3 (ENSSSAG00000058949)	ENSSSAG00000018031	ENSSSAG00000058959	plppr2a (ENSSSAG00000058994)	tlcd4b (ENSSSAG00000041752)	ENSSSAG00000122078	tmem205 (ENSSSAG00000062351)	rab3db (ENSSSAG00000072778)	epor (ENSSSAG00000070444)	ENSSSAG00000091143	tspan35 (ENSSSAG00000070456)	ENSSSAG00000059095	zgc:158403 (ENSSSAG00000059150)	ENSSSAG00000098405	nfixb (ENSSSAG00000070504) ##22	ENSSSAG00000070460	ENSSSAG00000082828	ENSSSAG00000070848	ENSSSAG00000112012	ENSSSAG00000094167	ENSSSAG00000059970	ENSSSAG00000099487	ENSSSAG00000060545	bglap (ENSSSAG00000060615)	ENSSSAG00000115660	ENSSSAG00000059883	ENSSSAG00000059823	ENSSSAG00000082017	CD9 (ENSSSAG00000059637)	ENSSSAG00000120174
River trout	MODERN SPECIES		nfil3-6 (ENSSTUG00000040080)	ENSSTUG00000040065	ENSSTUG00000040040	plppr2a (ENSSTUG00000039976)	tlcd4b (ENSSTUG00000039953)	CNN1 (ENSSTUG00000039927)	ENSSTUG00000039886	tmem205 (ENSSTUG00000039867)	rab3db (ENSSTUG00000039811)	epor (ENSSTUG00000039775)	ZNF653 (ENSSTUG00000039768)	tspan35 (ENSSTUG00000039748)	ENSSTUG00000039719	zgc:158403 (ENSSTUG00000039543)	ENSSTUG00000039518	nfixb (ENSSTUG00000039411) ##22	rad23aa (ENSSTUG00000039339)	MYH10 (ENSSTUG00000034084)	ddx47 (ENSSTUG00000033785)	ENSSTUG00000033755	ENSSTUG00000033739	ENSSTUG00000033717	ENSSTUG00000033706	ENSSTUG00000033669	ENSSTUG00000033651	ENSSTUG00000033571	ENSSTUG00000033515	ENSSTUG00000033487	EMP1 (ENSSTUG00000033456)	GSG1 (ENSSTUG00000033454)	GRIN2B (ENSSTUG00000033340)
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.a ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.a ##22
Chinook salmon	MODERN SPECIES	6	ENSOTSG00005011911	ENSOTSG00005011912	nfil3-6 (ENSOTSG00005011914)	ENSOTSG00005011915	ENSOTSG00005011916	plppr2a (ENSOTSG00005011917)	CNN1 (ENSOTSG00005011919)	ELOF1 (ENSOTSG00005011920)	rab3db (ENSOTSG00005011922)	epor (ENSOTSG00005011923)	ENSOTSG00005011925	ZNF653 (ENSOTSG00005011927)	tspan35 (ENSOTSG00005011930)	zgc:158403 (ENSOTSG00005001819)	ENSOTSG00005001904	ENSOTSG00005001910 ##22	USP15 (ENSOTSG00005001921)	KDM5A (ENSOTSG00005002261)	ENSOTSG00005005949	ENSOTSG00005005951	ENSOTSG00005005952	ENSOTSG00005005953	cdkn1ba (ENSOTSG00005005954)	btbd11a (ENSOTSG00005005957)	ENSOTSG00005006274	cwc27 (ENSOTSG00005006280)	ENSOTSG00005006645	ENSOTSG00005006646	trim23 (ENSOTSG00005006648)	lhx5 (ENSOTSG00005006908)	ENSOTSG00005006910
Salmoninae	ANCESTRAL SPECIES		ENSGT00940000158145.b.h.b	ENSGT00940000159680.f	ENSGT00940000158145.b.h.a	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680.e	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b.b	ENSGT00940000160315.c.b.a	ENSGT00940000177903	ENSGT00940000160257.e.b	ENSGT00940000164506.b.b.b	ENSGT00940000164506.a.b.a	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.b ##22	ENSGT00390000012078.a.b.d.a.b	ENSGT00940000177692	ENSGT00390000012078.a.b.d.b	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.a ##22	ENSGT00390000012078.a.b.d.a.a	ENSGT00940000155159.C.cd	ENSGT00940000155774.b.b	ENSGT01010000222553	ENSGT00710000107036.a.a.b.a.a	ENSGT00390000003753.h.a	ENSGT00390000013260.A.b.b.p.a.a	ENSGT00950000182961.a.b.b.d	ENSGT00940000157534.a.b.b.b.a	ENSGT00940000155083.a.a	ENSGT00950000182696.A.a.a.b.a
Salmoninae_a	ANCESTRAL SPECIES	37	ENSGT00940000160315.c.b.a	ENSGT00940000177903	ENSGT00940000160257.e.b.b	ENSGT00940000164506.b.b.a	ENSGT00940000159680.e.a	ENSGT00390000000053.b.s.b	ENSGT00390000016298.a.h	ENSGT00940000157552.s.b.b	ENSGT00940000160315.d	ENSGT00940000167287	ENSGT00940000160257.e.b.a	ENSGT00940000164506.b.b.b	ENSGT00940000164506.a.b.b	ENSGT00950000182917.a.b.b.d	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.b ##22	ENSGT00390000012078.a.b.d.a.b	ENSGT00940000177692	ENSGT00390000012078.a.b.d.b	ENSGT00940000155159.C.cd	ENSGT00940000155774.b.b	ENSGT00940000162350.b.b.a	ENSGT00710000107036.a.a.a	ENSGT00390000003753.g	ENSGT00390000013260.A.b.b.o	ENSGT00950000182961.a.b.b.c	ENSGT00940000157534.a.b.b.b.b	ENSGT00950000182696.A.a.a.b.a	ENSGT01000000216011.c	ENSGT00940000157896.m.a	ENSGT00940000155964.g.c.a
Salmo	ANCESTRAL SPECIES	69	ENSGT00940000169385.b	ENSGT00940000158145.b.h.a	ENSGT01010000222313.A.b.a.c.f	ENSGT00940000159680.e.a	ENSGT00390000000053.b.s.a	ENSGT00390000016298.a.g	ENSGT00940000157552.s.b.b.a	ENSGT00940000160315.c.b.a	ENSGT00940000177903	ENSGT00940000160257.e.b.b	ENSGT00940000164506.b.b.a	ENSGT00390000015119.e.b	ENSGT00940000164506.a.b.a	ENSGT00950000182917.a.b.b.c	ENSGT00390000013719.m	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.b ##22	ENSGT00390000012078.a.b.d.a.b	ENSGT00940000158091.e	ENSGT00940000155159.C.cd.b	ENSGT00940000155774.b.b	ENSGT00940000162350.b.a	ENSGT00940000162350.b.b.b	ENSGT00710000107036.a.a.b.a.a	ENSGT00390000003753.h.a	ENSGT00390000013260.A.b.b.p.a.a	ENSGT00950000182961.a.b.b.d	ENSGT00940000157534.a.b.a.a	ENSGT00940000155083.a.a	ENSGT01000000214705.c	ENSGT00950000182696.A.a.a.b.a	ENSGT00940000157896.m.a
River trout	MODERN SPECIES	25	ENSSTUG00000005794	plppr2a (ENSSTUG00000005781)	tlcd4b (ENSSTUG00000005750)	CNN1 (ENSSTUG00000005737)	ELOF1 (ENSSTUG00000005715)	tmem205 (ENSSTUG00000005710)	rab3db (ENSSTUG00000005697)	epor (ENSSTUG00000005674)	ENSSTUG00000005658	ZNF653 (ENSSTUG00000005650)	tspan35 (ENSSTUG00000005634)	wdr74 (ENSSTUG00000005618)	ENSSTUG00000005604	zgc:158403 (ENSSTUG00000005362)	ENSSTUG00000005300	nfixb (ENSSTUG00000005160) ##22	rad23aa (ENSSTUG00000005132)	ENSSTUG00000005113	ENSSTUG00000004708	ddx47 (ENSSTUG00000004536)	ENSSTUG00000004525	ENSSTUG00000004504	ENSSTUG00000004492	ENSSTUG00000004480	ENSSTUG00000004473	ENSSTUG00000004448	ENSSTUG00000004414	ENSSTUG00000004391	ENSSTUG00000004361	EMP1 (ENSSTUG00000004331)	ENSSTUG00000004320
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000081969	nfil3-6 (ENSSSAG00000103437)	ENSSSAG00000041841	ENSSSAG00000041827	plppr2a (ENSSSAG00000041767)	ENSSSAG00000041742	rab3db (ENSSSAG00000108704)	ENSSSAG00000041645	ENSSSAG00000101498	ENSSSAG00000041620	ENSSSAG00000041390	ENSSSAG00000041376	zgc:158403 (ENSSSAG00000041132)	ENSSSAG00000106231	ENSSSAG00000082723	nfixb (ENSSSAG00000093777) ##22	ENSSSAG00000070417	ENSSSAG00000070405	ENSSSAG00000088748	ENSSSAG00000098058	ENSSSAG00000079875	ENSSSAG00000079880	ENSSSAG00000079885	ENSSSAG00000079889	ENSSSAG00000079904	ENSSSAG00000079917	ENSSSAG00000092394	ENSSSAG00000079926	cd9 (ENSSSAG00000079939)	ENSSSAG00000079944	ENSSSAG00000104080
Oncorhynchus	DUPLICATION
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	48					ENSGT00940000159680.f	ENSGT00390000000053.b.s.a	ENSGT00390000016298.a.g	ENSGT00940000157552.s.b.a	ENSGT00940000160315.d.a	ENSGT00940000160257.e.a.a	ENSGT00940000160257.f	ENSGT00940000164506.b.b.a	ENSGT00940000164506.a.b.a	ENSGT00950000182917.a.b.b.c	ENSGT00390000013719.p	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.b.a.a ##22	ENSGT00390000012078.a.b.d.b.b	ENSGT00940000155159.C.cd.c	ENSGT00940000155774.b.b	ENSGT00940000162350.b.b.a	ENSGT00710000107036.a.a.a	ENSGT00390000003753.g.b	ENSGT00390000013260.A.b.b.o.b	ENSGT00950000182961.a.b.b.c.b	ENSGT00940000157534.a.b.b.b.a	ENSGT00940000155083.a.a.c	ENSGT00950000182696.A.a.a.b.a	ENSGT01000000216011.c	ENSGT01050000244814.a.a.a.b.b.a	ENSGT00940000157896.m.b	ENSGT00940000155964.g.c.b.b
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000027555	ENSOMYG00000063430	plppr2a (ENSOMYG00000027579)	tlcd4b (ENSOMYG00000027593)	ENSOMYG00000027628	ENSOMYG00000027643	tmem205 (ENSOMYG00000027665)	rab3db (ENSOMYG00000027615)	epor (ENSOMYG00000027675)	ENSOMYG00000027682	tspan35 (ENSOMYG00000027690)	ENSOMYG00000027747	zgc:158403 (ENSOMYG00000027896)	ENSOMYG00000028178	ENSOMYG00000048914	nfixb (ENSOMYG00000028207) ##22	ENSOMYG00000028257	ENSOMYG00000031595	ENSOMYG00000045066	ENSOMYG00000045142	ENSOMYG00000045148	ENSOMYG00000045152	ENSOMYG00000054605	ENSOMYG00000045160	ENSOMYG00000045167	ENSOMYG00000045180	ENSOMYG00000045187	ENSOMYG00000045189	ENSOMYG00000014237	ENSOMYG00000045211	ENSOMYG00000035663
Oncorhynchus_a	ANCESTRAL SPECIES	55	ENSGT00940000164623.B.g	ENSGT00940000164108.a.a.a	ENSGT00940000157019.h.a.b	ENSGT00940000169385.b	ENSGT00940000158145.b.h.a	ENSGT00940000159680.f	ENSGT00390000000053.b.s.a	ENSGT00390000016298.a.g	ENSGT00940000157552.s.b.a	ENSGT00940000160315.d.a	ENSGT00940000160257.e.a.a	ENSGT00940000164506.b.b.a	ENSGT00940000164506.a.b.a	ENSGT00950000182917.a.b.b.c	ENSGT00390000013719.p	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.b.a.a ##22	ENSGT00940000155159.C.cd.c	ENSGT00940000155774.b.b	ENSGT00940000162350.b.b.a	ENSGT00710000107036.a.a.a	ENSGT00390000003753.g.b	ENSGT00390000013260.A.b.b.o.a	ENSGT00950000182961.a.b.b.c.b	ENSGT00940000157534.a.b.b.b.b	ENSGT00940000155083.a.b	ENSGT00950000182696.A.a.a.b.b	ENSGT01050000244814.a.a.a.b.b.b
Coho salmon	MODERN SPECIES	26	nfil3-6 (ENSOKIG00005007777)	ENSOKIG00005007770	ENSOKIG00005007752	ENSOKIG00005007744	plppr2a (ENSOKIG00005007713)	CNN1 (ENSOKIG00005007692)	ELOF1 (ENSOKIG00005007658)	tmem205 (ENSOKIG00005007648)	rab3db (ENSOKIG00005007629)	epor (ENSOKIG00005007608)	ZNF653 (ENSOKIG00005007595)	tspan35 (ENSOKIG00005007591)	ENSOKIG00005007482	zgc:158403 (ENSOKIG00005007389)	ENSOKIG00005007363	nfixb (ENSOKIG00005007299) ##22	ENSOKIG00005002548	ddx47 (ENSOKIG00005001750)	ENSOKIG00005001729	ENSOKIG00005001709	ENSOKIG00005001703	mgp (ENSOKIG00005012376)	ENSOKIG00005012373	ENSOKIG00005012355	ENSOKIG00005012347	ENSOKIG00005012332	ENSOKIG00005012313	ENSOKIG00005012277	emp1 (ENSOKIG00005012247)	ENSOKIG00005012224	ENSOKIG00005012168
Oncorhynchus	ANCESTRAL SPECIES	37	ENSGT00940000158145.b.h.a	ENSGT00940000158145.b.h.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680.e.b	ENSGT00940000159680.e.a	ENSGT00390000000053.b.s.b	ENSGT00390000016298.a.h	ENSGT00940000157552.s.b.b	ENSGT00940000160315.d.b	ENSGT00940000167287	ENSGT00940000160257.e.b.a	ENSGT00940000164506.b.b.b	ENSGT00940000164506.a.b.b	ENSGT00950000182917.a.b.b.d	ENSGT00390000013719.o	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.b.a.b ##22	ENSGT00390000012078.a.b.d.b.a	ENSGT00950000182916.a.b.a.a.a.b.a.b.n ##22	ENSGT00390000012078.a.b.c	ENSGT00940000155159.C.cd.d	ENSGT00940000155774.b.a	ENSGT00940000162350.b.a	ENSGT00940000162350.b.b.b	ENSGT01010000222553	ENSGT00710000107036.a.a.b.b	ENSGT00390000003753.g.a	ENSGT00390000013260.A.b.b.o.a	ENSGT00950000182961.a.b.b.c.a	ENSGT00940000157534.a.b.b.b.b	ENSGT00940000155083.a.b	ENSGT00950000182696.A.a.a.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	44	ENSGT00940000169385.a	ENSGT00940000158145.b.h.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680.e.b	ENSGT00940000159680.e.a	ENSGT00390000000053.b.s.b	ENSGT00390000016298.a.h	ENSGT00940000157552.s.b.b	ENSGT00940000160315.d.b	ENSGT00940000167287	ENSGT00940000160257.e.b.a	ENSGT00940000164506.b.b.b	ENSGT00940000164506.a.b.b	ENSGT00950000182917.a.b.b.d	ENSGT00390000013719.o	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.b.a.b ##22	ENSGT00390000012078.a.b.d.b.a	ENSGT00940000155159.C.cd.d	ENSGT00940000155774.b.a	ENSGT00940000162350.b.a	ENSGT01010000222553	ENSGT00710000107036.a.a.b.b	ENSGT00390000003753.g.a	ENSGT00390000013260.A.b.b.o.b	ENSGT00950000182961.a.b.b.c.a	ENSGT00940000157534.a.b.b.b.a	ENSGT00940000155083.a.a.c	ENSGT00940000161324.h.a.a	ENSGT00950000182696.A.a.a.b.a	ENSGT01000000216011.c	ENSGT00940000157896.m.b
Coho salmon	MODERN SPECIES	1	ENSOKIG00005008361	plppr2a (ENSOKIG00005008323)	tlcd4b (ENSOKIG00005008305)	CNN1 (ENSOKIG00005008292)	ELOF1 (ENSOKIG00005008277)	tmem205 (ENSOKIG00005008253)	rab3db (ENSOKIG00005008215)	epor (ENSOKIG00005008192)	swsap1 (ENSOKIG00005008180)	ZNF653 (ENSOKIG00005008171)	tspan35 (ENSOKIG00005008149)	ENSOKIG00005008124	zgc:158403 (ENSOKIG00005007898)	ENSOKIG00005007849	RAD23A (ENSOKIG00005007830)	nfixb (ENSOKIG00005007740) ##22	ENSOKIG00005007712	MYH10 (ENSOKIG00005004915)	ddx47 (ENSOKIG00005004393)	ENSOKIG00005004283	ENSOKIG00005004251	ENSOKIG00005004234	mgp (ENSOKIG00005004223)	ENSOKIG00005004200	ENSOKIG00005004180	ENSOKIG00005004160	ENSOKIG00005004140	EMP1 (ENSOKIG00005004123)	GSG1 (ENSOKIG00005004117)	ENSOKIG00005004110	ENSOKIG00005004103
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000018695	ENSOMYG00000067545	plppr2a (ENSOMYG00000018666)	tlcd4b (ENSOMYG00000064399)	ENSOMYG00000066782	ENSOMYG00000018613	ENSOMYG00000018586	tmem205 (ENSOMYG00000018555)	rab3db (ENSOMYG00000018538)	epor (ENSOMYG00000018495)	swsap1 (ENSOMYG00000018471)	ENSOMYG00000018464	tspan35 (ENSOMYG00000018446)	zgc:158403 (ENSOMYG00000017535)	ENSOMYG00000017394	nfixb (ENSOMYG00000017374) ##22	ENSOMYG00000017369	ENSOMYG00000014070	ENSOMYG00000013616	ENSOMYG00000013585	ENSOMYG00000013573	ENSOMYG00000013558	ENSOMYG00000013549	ENSOMYG00000061797	ENSOMYG00000013519	ENSOMYG00000013504	ENSOMYG00000013447	ENSOMYG00000013495	EMP1 (ENSOMYG00000013423)	ENSOMYG00000065569	ENSOMYG00000013415
Oncorhynchus	ANCESTRAL SPECIES	670																ENSGT00950000182916.a.b.a.a.a.b.a.b.m.b.b ##22	ENSGT00940000177692
Oncorhynchus_a	ANCESTRAL SPECIES	804																ENSGT00950000182916.a.b.a.a.a.b.a.b.m.b.b ##22	ENSGT00940000177692
Chinook salmon	MODERN SPECIES	33	syce2 (ENSOTSG00005011243)	gcdhb (ENSOTSG00005011244)	SLC44A2 (ENSOTSG00005011464)	plppr2a (ENSOTSG00005011594)	tlcd4b (ENSOTSG00005025544)	CNN1 (ENSOTSG00005025545)	ELOF1 (ENSOTSG00005025546)	tmem205 (ENSOTSG00005025560)	rab3db (ENSOTSG00005025561)	epor (ENSOTSG00005025563)	ZNF653 (ENSOTSG00005025566)	tspan35 (ENSOTSG00005025567)	ENSOTSG00005025569	zgc:158403 (ENSOTSG00005025571)	ENSOTSG00005025662	nfixb (ENSOTSG00005025666) ##22	ENSOTSG00005025668	rad23aa (ENSOTSG00005025669)	ENSOTSG00005025670	ENSOTSG00005025746	ddx47 (ENSOTSG00005035272)	ENSOTSG00005035282	ENSOTSG00005035284	ENSOTSG00005035286	ENSOTSG00005035287	ENSOTSG00005035288	GPRC5A (ENSOTSG00005035290)	ENSOTSG00005035291	ENSOTSG00005035292	ENSOTSG00005035293	SYNGR1 (ENSOTSG00005035295)
Salmoninae	ANCESTRAL SPECIES	1646																ENSGT00950000182916.a.b.a.a.a.b.a.b.n ##22	ENSGT00390000012078.a.b.c
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1843																NFIX (ENSHHUG00000001187) ##22	rad23aa (ENSHHUG00000001233)	MYH10 (ENSHHUG00000001248)	ddx47 (ENSHHUG00000002565)	ENSHHUG00000002576	ENSHHUG00000002581	mgp (ENSHHUG00000002588)	ENSHHUG00000002628	ENSHHUG00000002666	ENSHHUG00000002673	ENSHHUG00000002681
Huchen	MODERN SPECIES	1271																NFIX (ENSHHUG00000037979) ##22	ENSHHUG00000037974	ENSHHUG00000037969	ENSHHUG00000036742	ddx47 (ENSHHUG00000036681)	ENSHHUG00000036662	ENSHHUG00000036655	mgp (ENSHHUG00000036642)	ENSHHUG00000036632	ENSHHUG00000036629	ENSHHUG00000036618	ENSHHUG00000036605	emp1 (ENSHHUG00000036597)	GSG1 (ENSHHUG00000036593)	ENSHHUG00000036589	GRIN2B (ENSHHUG00000036557)
Salmoninae_a	ANCESTRAL SPECIES	633																ENSGT00950000182916.a.b.a.a.a.b.a.b.n ##22	ENSGT00390000012078.a.b.c
Salmo	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.a.b.n ##22
River trout	MODERN SPECIES	5	ENSSTUG00000037762	odad3 (ENSSTUG00000037794)	ENSSTUG00000037983	nfil3-5 (ENSSTUG00000038032)	ENSSTUG00000038034	ENSSTUG00000038038	klf1 (ENSSTUG00000038051)	ENSSTUG00000038056	palm3 (ENSSTUG00000038061)	PLPPR2 (ENSSTUG00000038067)	elof1 (ENSSTUG00000038104)	pld6 (ENSSTUG00000038116)	RAB3D (ENSSTUG00000038123)	tspan34 (ENSSTUG00000038169)	ENSSTUG00000038188	NFIX (ENSSTUG00000038221) ##22	rnf11a (ENSSTUG00000038274)	ENSSTUG00000038287	ENSSTUG00000038318	ENSSTUG00000038329	ENSSTUG00000038333	ENSSTUG00000038340	ENSSTUG00000038363	fdx2 (ENSSTUG00000038372)	s1pr5b (ENSSTUG00000038384)	keap1b (ENSSTUG00000038417)	ENSSTUG00000039030	CDKN2D (ENSSTUG00000039035)	AP1M2 (ENSSTUG00000039048)	ENSSTUG00000039191	SMARCA4 (ENSSTUG00000043678)
Oncorhynchus	ANCESTRAL SPECIES	37	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680.e.b	ENSGT00940000159680.e.a	ENSGT00390000000053.b.s.b	ENSGT00390000016298.a.h	ENSGT00940000157552.s.b.b	ENSGT00940000160315.d.b	ENSGT00940000167287	ENSGT00940000160257.e.b.a	ENSGT00940000164506.b.b.b	ENSGT00940000164506.a.b.b	ENSGT00950000182917.a.b.b.d	ENSGT00390000013719.o	ENSGT00950000182916.a.b.a.a.a.b.a.b.m.b.a.b ##22	ENSGT00390000012078.a.b.d.b.a	ENSGT00950000182916.a.b.a.a.a.b.a.b.n ##22	ENSGT00390000012078.a.b.c	ENSGT00940000155159.C.cd.d	ENSGT00940000155774.b.a	ENSGT00940000162350.b.a	ENSGT00940000162350.b.b.b	ENSGT01010000222553	ENSGT00710000107036.a.a.b.b	ENSGT00390000003753.g.a	ENSGT00390000013260.A.b.b.o.a	ENSGT00950000182961.a.b.b.c.a	ENSGT00940000157534.a.b.b.b.b	ENSGT00940000155083.a.b	ENSGT00950000182696.A.a.a.b.b	ENSGT01000000216011.d	ENSGT00940000155964.g.d
Oncorhynchus_a	ANCESTRAL SPECIES	125								ENSGT00940000158145.a.f.b	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a.b	ENSGT00940000164506.b.a.f.a.b	ENSGT00940000164506.a.a	ENSGT00940000164506.b.a.f.b	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.a.b.n ##22	ENSGT00390000012078.a.b.c	ENSGT00940000163721	ENSGT00390000017673.b.k.d.a	ENSGT00390000012436.h.d	ENSGT00940000165343.c.a	ENSGT00940000166140.a.b	ENSGT00940000157140.b.b.b.d.d	ENSGT00470000042444.d	ENSGT00940000161143.i.b	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948.k.a.b	ENSGT00940000165948.k.a.a	ENSGT00940000159801.B.c.a	ENSGT00940000159089.f
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	3052												elof1 (ENSOTSG00005041403)	pld6 (ENSOTSG00005041402)	tspan34 (ENSOTSG00005041400)	dand5 (ENSOTSG00005041399)	ENSOTSG00005041398 ##22	rnf11a (ENSOTSG00005041395)	ENSOTSG00005041391	ENSOTSG00005041390	ENSOTSG00005041388	ENSOTSG00005041384	ENSOTSG00005041381	ENSOTSG00005041379	fdx2 (ENSOTSG00005041377)
Chinook salmon	MODERN SPECIES	33	hbba2 (ENSOTSG00005038080)	ENSOTSG00005038087	ENSOTSG00005038090	nprl3 (ENSOTSG00005038093)	mpg (ENSOTSG00005038505)	rhbdf1a (ENSOTSG00005038508)	aanat2 (ENSOTSG00005038567)	ENSOTSG00005038568	mgrn1b (ENSOTSG00005038580)	ubald1b (ENSOTSG00005038583)	cdip1 (ENSOTSG00005038584)	polr3k (ENSOTSG00005038585)	snrnp25 (ENSOTSG00005038586)	ENSOTSG00005038590	MRTFB (ENSOTSG00005038592)	ENSOTSG00005038593 ##22	rad23aa (ENSOTSG00005038594)	MYH10 (ENSOTSG00005038983)	ddx47 (ENSOTSG00005047822)	ENSOTSG00005047823	ENSOTSG00005047824	ENSOTSG00005047825	mgp (ENSOTSG00005047826)	ENSOTSG00005047827	ENSOTSG00005047828	ENSOTSG00005047829	EMP1 (ENSOTSG00005047831)	ENSOTSG00005047832	ENSOTSG00005047834	ENSOTSG00005047835	GRIN2B (ENSOTSG00005047836)
Otomorpha	ANCESTRAL SPECIES	19	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000165237.b.b	ENSGT00940000159680	ENSGT00390000000053.a	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00940000164506.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000155159.C	ENSGT00940000155774.b	ENSGT01010000222553	ENSGT00710000107036.a.a	ENSGT00390000003753	ENSGT00390000013260.A.b.a	ENSGT00950000182961.a.b.b	ENSGT00940000157534.a.b	ENSGT00940000155083.a	ENSGT00950000182696.A.a.a.b	ENSGT01050000244814.a.a.a.b	ENSGT00940000157896	ENSGT00940000155964.g	ENSGT00390000012258	ENSGT00940000160320
Clupeiformes	ANCESTRAL SPECIES	17							ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00940000164506.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000155159.C	ENSGT00940000155774.b	ENSGT00940000162350.b.b	ENSGT01010000222553	ENSGT00710000107036.a.a	ENSGT00390000003753	ENSGT00390000013260.A.b.a	ENSGT00950000182961.a.b.b	ENSGT00940000157534.a.b	ENSGT00940000155083.a	ENSGT00950000182696.A.a.a.b	ENSGT01050000244814.a.a.a.b	ENSGT00940000157896	ENSGT00940000155964.g	ENSGT00390000012258
Denticle herring	MODERN SPECIES	17	tmem220 (ENSDCDG00000010330)	CYGB (ENSDCDG00000010344)	cygb1 (ENSDCDG00000010349)	ENSDCDG00000010353	ENSDCDG00000010375	SPHK1 (ENSDCDG00000010410)	AANAT (ENSDCDG00000010417)	tmem205 (ENSDCDG00000010431)	rab3db (ENSDCDG00000010438)	epor (ENSDCDG00000010447)	swsap1 (ENSDCDG00000010462)	ENSDCDG00000010471	tspan35 (ENSDCDG00000010483)	zgc:158403 (ENSDCDG00000010593)	ENSDCDG00000012373	nfixb (ENSDCDG00000012441) ##22	MYH10 (ENSDCDG00000013375)	ddx47 (ENSDCDG00000026054)	ENSDCDG00000026064	ENSDCDG00000026069	ENSDCDG00000026070	ENSDCDG00000026071	ENSDCDG00000026075	ENSDCDG00000026078	ENSDCDG00000026085	ENSDCDG00000026087	ENSDCDG00000026102	EMP1 (ENSDCDG00000026114)	GSG1 (ENSDCDG00000026117)	ENSDCDG00000026120	GRIN2B (ENSDCDG00000026129)
Atlantic herring	MODERN SPECIES		TMEM100 (ENSCHAG00000000216)	mmd (ENSCHAG00000000244)	hlfa (ENSCHAG00000000311)	FOXK2 (ENSCHAG00000000358)	ENSCHAG00000000461	ENSCHAG00000000485	SHISA6 (ENSCHAG00000000520)	elac2 (ENSCHAG00000001145)	AANAT (ENSCHAG00000003003)	ENSCHAG00000003043	ZNF653 (ENSCHAG00000003109)	tspan35 (ENSCHAG00000003148)	ENSCHAG00000003189	zgc:158403 (ENSCHAG00000003320)	ENSCHAG00000006312	nfixb (ENSCHAG00000006338) ##22	ENSCHAG00000006740	ddx47 (ENSCHAG00000008466)	wbp11 (ENSCHAG00000009026)	ENSCHAG00000009052	mgp (ENSCHAG00000009057)	ENSCHAG00000009068	GPRC5D (ENSCHAG00000009111)	ENSCHAG00000009138	ENSCHAG00000009164	EMP1 (ENSCHAG00000009207)	ENSCHAG00000009220	ENSCHAG00000009224	GRIN2B (ENSCHAG00000009255)	ENSCHAG00000009700	FMC1 (ENSCHAG00000009714)
Otophysi	ANCESTRAL SPECIES	206	ENSGT00940000164108.a.a.f.a	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.a	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00940000164506.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000160286	ENSGT00390000002810	ENSGT00390000014771.b.a	ENSGT00940000178574	ENSGT00940000160874	ENSGT00390000013260.C
Characiphysae	ANCESTRAL SPECIES	33	ENSGT00940000164623.B	ENSGT00940000164108.a.a.f.a	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.a	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00940000164506.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000160286	ENSGT00390000002810	ENSGT00390000014771.b.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520	ENSGT00940000163587.a.b.a.c.a	ENSGT00940000157800	ENSGT00390000018570.b.b	ENSGT00390000006233.c.b.y	ENSGT00390000018868.B.a
Channel catfish	MODERN SPECIES	11	nfil3 (ENSIPUG00000007151)	nfil3-6 (ENSIPUG00000007141)	ENSIPUG00000007126	plppr2a (ENSIPUG00000007079)	tlcd4b (ENSIPUG00000007021)	Cnn1 (ENSIPUG00000006977)	elof1 (ENSIPUG00000006966)	tmem205 (ENSIPUG00000006956)	rab3db (ENSIPUG00000006926)	EPOR (ENSIPUG00000006904)	swsap1 (ENSIPUG00000006880)	znf653 (ENSIPUG00000006870)	Tspan1 (ENSIPUG00000006854)	zgc:158403 (ENSIPUG00000006835)	gadd45gip1 (ENSIPUG00000006827)	nfix (ENSIPUG00000006654) ##22	NME4 (ENSIPUG00000006600)	xpo6 (ENSIPUG00000006516)	antkmt (ENSIPUG00000006474)	fbxw9 (ENSIPUG00000006454)	ENSIPUG00000006442	kri1 (ENSIPUG00000006407)	LDLR (ENSIPUG00000006346)	smarca4a (ENSIPUG00000006107)	ENSIPUG00000006087	rln3a (ENSIPUG00000006077)	rfx1a (ENSIPUG00000006017)	grin2c (ENSIPUG00000005977)	tmem104 (ENSIPUG00000005918)	tnpo2 (ENSIPUG00000005768)	gaa (ENSIPUG00000005743)
Characiphysae_b	ANCESTRAL SPECIES	24	ENSGT00940000164623.B	ENSGT00940000164108.a.a.f.a	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.a	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00940000164506.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000160286	ENSGT00390000002810	ENSGT00390000014771.b.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520	ENSGT00940000163587.a.b.a.c.a	ENSGT00940000157800	ENSGT00390000018570.b.b	ENSGT00390000006233.c.b.y	ENSGT00390000018868.B.a
Characoidei	ANCESTRAL SPECIES	61	ENSGT00990000204498	ENSGT00970000194664	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.a	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00940000164506.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000160286	ENSGT00390000002810	ENSGT00390000014771.b.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000158883.a	ENSGT00940000158326	ENSGT00530000066520	ENSGT00940000163587.a.b.a.c.a	ENSGT00940000157800	ENSGT00390000018570.b.b	ENSGT00390000006233.c.b.y	ENSGT00390000018868.B.a
Mexicana tetra	MODERN SPECIES	45	dnaja3a (ENSAMXG00000018821)	ENSAMXG00000035160	coro7 (ENSAMXG00000018818)	pam16 (ENSAMXG00000018809)	glis2b (ENSAMXG00000029380)	TFAP4 (ENSAMXG00000018800)	srl (ENSAMXG00000018789)	ENSAMXG00000033233	xylt2 (ENSAMXG00000018776)	ENSAMXG00000034972	ENSAMXG00000009276	ENSAMXG00000038065	RECQL5 (ENSAMXG00000009293)	zgc:158403 (ENSAMXG00000040362)	GADD45GIP1 (ENSAMXG00000031871)	nfixb (ENSAMXG00000015498) ##22	nme4 (ENSAMXG00000042580)	xpo6 (ENSAMXG00000032539)	antkmt (ENSAMXG00000039663)	ENSAMXG00000041807	ENSAMXG00000041615	dhps (ENSAMXG00000035576)	NHERF2 (ENSAMXG00000032200)	tspan35 (ENSAMXG00000036932)	ZNF653 (ENSAMXG00000035506)	swsap1 (ENSAMXG00000029310)	epor (ENSAMXG00000043512)	rab3db (ENSAMXG00000005465)	tmem205 (ENSAMXG00000029977)	elof1 (ENSAMXG00000038913)	CNN1 (ENSAMXG00000031897)
Red-bellied piranha	MODERN SPECIES	381			plppr2a (ENSPNAG00000008473)	tlcd4b (ENSPNAG00000008446)	CNN1 (ENSPNAG00000001008)	elof1 (ENSPNAG00000000989)	tmem205 (ENSPNAG00000000983)	rab3db (ENSPNAG00000000973)	epor (ENSPNAG00000000954)	swsap1 (ENSPNAG00000008369)	ZNF653 (ENSPNAG00000000938)	tspan35 (ENSPNAG00000000924)	ENSPNAG00000000910	zgc:158403 (ENSPNAG00000000898)	ENSPNAG00000005008	nfixb (ENSPNAG00000000886) ##22	ENSPNAG00000000878	nme4 (ENSPNAG00000000873)	xpo6 (ENSPNAG00000008284)	antkmt (ENSPNAG00000008238)	ENSPNAG00000000800	ENSPNAG00000008227	dhps (ENSPNAG00000008224)
Electric eel	MODERN SPECIES	99	ENSEEEG00000018523	nfil3-6 (ENSEEEG00000018522)	plppr2a (ENSEEEG00000018519)	tlcd4b (ENSEEEG00000018516)	CNN1 (ENSEEEG00000018513)	elof1 (ENSEEEG00000018512)	tmem205 (ENSEEEG00000018511)	rab3db (ENSEEEG00000018507)	epor (ENSEEEG00000018506)	swsap1 (ENSEEEG00000018503)	ZNF653 (ENSEEEG00000018501)	tspan35 (ENSEEEG00000018500)	ENSEEEG00000018499	zgc:158403 (ENSEEEG00000018496)	GADD45GIP1 (ENSEEEG00000018495)	nfixb (ENSEEEG00000018476) ##22	nme4 (ENSEEEG00000018346)	xpo6 (ENSEEEG00000017932)	antkmt (ENSEEEG00000017915)	ENSEEEG00000017914	ENSEEEG00000017898	dhps (ENSEEEG00000017892)	NHERF2 (ENSEEEG00000017889)	ENSEEEG00000017888	xylt2 (ENSEEEG00000017887)	ENSEEEG00000017885	ENSEEEG00000017883	RECQL5 (ENSEEEG00000017881)	ENSEEEG00000017880	ENSEEEG00000017879	sun1b (ENSEEEG00000017872)
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT00940000164623.B	ENSGT00940000164108.a.a.f.a	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.a	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315.i	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00940000160286	ENSGT00390000002810	ENSGT00390000014771.b.a	ENSGT00410000026495.C.b	ENSGT00940000160874	ENSGT00390000013260.C.g	ENSGT00390000014062	ENSGT00950000183143.c.b	ENSGT00940000160492	ENSGT00940000159252.b.b	ENSGT00940000160506.b	ENSGT00940000164396	ENSGT00940000154813.e.a.b	ENSGT00950000183191.a.a.f	ENSGT00940000157795.g.b
Zebrafish	MODERN SPECIES	18	nfil3-6 (ENSDARG00000087188)	ENSDARG00000097615	ENSDARG00000097099	plppr2a (ENSDARG00000101478)	tlcd4b (ENSDARG00000098224)	CNN1 (ENSDARG00000102398)	elof1 (ENSDARG00000099453)	tmem205 (ENSDARG00000100677)	rab3db (ENSDARG00000101534)	epor (ENSDARG00000090834)	swsap1 (ENSDARG00000093423)	ZNF653 (ENSDARG00000093469)	tspan35 (ENSDARG00000025757)	zgc:158403 (ENSDARG00000062757)	GADD45GIP1 (ENSDARG00000039338)	nfixb (ENSDARG00000061836) ##22	nme4 (ENSDARG00000088390)	xpo6 (ENSDARG00000041217)	antkmt (ENSDARG00000041223)	si:dkey-282h22.5 (ENSDARG00000092458)	TSPAN10 (ENSDARG00000044767)	hirip3 (ENSDARG00000027749)	kctd13 (ENSDARG00000044769)	ENSDARG00000076052	ENSDARG00000075813	cabp5b (ENSDARG00000028485)	pitpnbl (ENSDARG00000015310)	sh2b1 (ENSDARG00000057679)	atxn2l (ENSDARG00000011597)	lat (ENSDARG00000100334)	si:dkey-56d12.4 (ENSDARG00000070845)
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	216	ENSGT00940000164108.a.a.f.a.b	ENSGT00940000158145.b.b	ENSGT01010000222313.A.b.a.c.b	ENSGT00940000159680.q.b	ENSGT00390000000053.a.j	ENSGT00390000016298.a.f	ENSGT00940000157552.s.b.f	ENSGT00940000160315.i.b	ENSGT00940000160257.g	ENSGT00940000164506.b.b.g.b	ENSGT00950000182917.a.b.b.a	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b.p ##22	ENSGT00940000160286.cb	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b.o.a ##22	ENSGT00940000160286.bb.a	ENSGT00390000002810.p	ENSGT00390000014771.b.a	ENSGT00410000026495.C.b.f	ENSGT00940000160874.b	ENSGT00390000013260.C.g.a
Goldfish	MODERN SPECIES	22	ENSCARG00000021570	SLC44A2 (ENSCARG00000021355)	ENSCARG00000021310	ENSCARG00000021307	nfil3-6 (ENSCARG00000021301)	plppr2a (ENSCARG00000021287)	tlcd4b (ENSCARG00000021270)	CNN1 (ENSCARG00000021234)	elof1 (ENSCARG00000021212)	rab3db (ENSCARG00000021174)	epor (ENSCARG00000021163)	tspan35 (ENSCARG00000021151)	zgc:158403 (ENSCARG00000020887)	GADD45GIP1 (ENSCARG00000020855)	ENSCARG00000020847	nfixb (ENSCARG00000020797) ##22	nme4 (ENSCARG00000020759)	xpo6 (ENSCARG00000020583)	antkmt (ENSCARG00000020570)	si:dkey-282h22.5 (ENSCARG00000020563)	ENSCARG00000020557	ENSCARG00000020550	ENSCARG00000020543	ENSCARG00000020541	drg2 (ENSCARG00000020517)	gfer (ENSCARG00000020504)	syngr3a (ENSCARG00000020487)	znf598 (ENSCARG00000020456)	flii (ENSCARG00000020403)	smcr8a (ENSCARG00000020372)	lfng (ENSCARG00000020238)
Cyprininae_a	ANCESTRAL SPECIES	385	ENSGT00940000165438.a.a.a.b	ENSGT00940000164623.B.a	ENSGT00940000164108.a.a.f.a.b	ENSGT00940000158145.b.b	ENSGT01010000222313.A.b.a.c.b	ENSGT00940000159680.q.b	ENSGT00390000000053.a.j	ENSGT00390000016298.a.f	ENSGT00940000157552.s.b.f	ENSGT00940000160315.i.b	ENSGT00940000177903	ENSGT00940000160257.g	ENSGT00940000164506.b.b.g.b	ENSGT00950000182917.a.b.b.a	ENSGT00390000013719.a	ENSGT00950000182916.a.b.a.a.a.b.a.b.o.a ##22	ENSGT00940000160286.bb.a	ENSGT00390000002810.p	ENSGT00390000014771.b.a	ENSGT00410000026495.C.b.f	ENSGT00940000160874.b	ENSGT00390000013260.C.g.a
Common carp reference	MODERN SPECIES	3	ENSCCRG00000023388	ENSCCRG00000078532	nfil3-6 (ENSCCRG00000007321)	ENSCCRG00000066993	ENSCCRG00000075619	plppr2a (ENSCCRG00000080604)	ENSCCRG00000078322	elof1 (ENSCCRG00000071575)	tmem205 (ENSCCRG00000049538)	rab3db (ENSCCRG00000049533)	epor (ENSCCRG00000059517)	ENSCCRG00000081018	tspan35 (ENSCCRG00000034357)	zgc:158403 (ENSCCRG00000034385)	ENSCCRG00000001269	nfixb (ENSCCRG00000039542) ##22	nme4 (ENSCCRG00000077502)	xpo6 (ENSCCRG00000009034)	antkmt (ENSCCRG00000019240)	ENSCCRG00000019077	ENSCCRG00000065347	ENSCCRG00000070305	ENSCCRG00000065360	ENSCCRG00000015888	ENSCCRG00000024883	trap1 (ENSCCRG00000031432)	ENSCCRG00000080383	ENSCCRG00000049657	ENSCCRG00000049636	CREBBP (ENSCCRG00000018810)	ADCY9 (ENSCCRG00000025641)
Cyprininae	ANCESTRAL SPECIES	423	ENSGT00940000158178.b.a.b	ENSGT00940000165438.a.a.a.a	ENSGT00940000164623.B.b	ENSGT00940000164108.a.a.f.a.a	ENSGT00940000158145.b.a	ENSGT01010000222313.A.b.a.c.a	ENSGT00940000159680.q.a	ENSGT00390000000053.a.i	ENSGT00390000016298.a.e	ENSGT00940000157552.s.b.e	ENSGT00940000160315.i.a	ENSGT00940000177903	ENSGT00940000160257.h	ENSGT00940000164506.b.b.g.a	ENSGT00950000182917.a.b.b.b	ENSGT00950000182916.a.b.a.a.a.b.a.b.o.b ##22	ENSGT00940000160286.bb.b	ENSGT00390000002810.o	ENSGT00410000026495.C.b.e	ENSGT00940000160874.a	ENSGT00390000013260.C.h
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	50	ENSCARG00000065066	ENSCARG00000065063	nfil3-6 (ENSCARG00000065061)	plppr2a (ENSCARG00000065043)	tlcd4b (ENSCARG00000065035)	CNN1 (ENSCARG00000064997)	elof1 (ENSCARG00000064958)	tmem205 (ENSCARG00000064945)	rab3db (ENSCARG00000064927)	epor (ENSCARG00000064901)	ENSCARG00000064884	ENSCARG00000064876	tspan35 (ENSCARG00000064868)	zgc:158403 (ENSCARG00000064806)	ENSCARG00000064794	nfixb (ENSCARG00000064703) ##22	nme4 (ENSCARG00000064661)	xpo6 (ENSCARG00000063494)	si:dkey-282h22.5 (ENSCARG00000063397)	TSPAN10 (ENSCARG00000063355)	PDE6H (ENSCARG00000063328)	ENSCARG00000063300	ENSCARG00000063272	ENSCARG00000063257	cdc42ep4a (ENSCARG00000063252)	pmp22a (ENSCARG00000063232)	hs3st3b1a (ENSCARG00000063208)	ARHGAP44 (ENSCARG00000063056)	ENSCARG00000063021	ndel1b (ENSCARG00000062985)	ENSCARG00000062970
Goldfish	MODERN SPECIES	50	ENSCARG00000061638	ENSCARG00000061631	ENSCARG00000061618	ENSCARG00000061602	dhps (ENSCARG00000061595)	NHERF2 (ENSCARG00000061585)	sun1b (ENSCARG00000061156)	ENSCARG00000061099	ENSCARG00000061050	tufm (ENSCARG00000060537)	amdhd2 (ENSCARG00000060463)	ENSCARG00000060449	zgc:77748 (ENSCARG00000060442)	ENSCARG00000060418	NFIX (ENSCARG00000060414) ##22	ENSCARG00000060400 ##22	nme4 (ENSCARG00000060369)	xpo6 (ENSCARG00000060210)	si:dkey-282h22.5 (ENSCARG00000060181)	TSPAN10 (ENSCARG00000059828)	pde6ga (ENSCARG00000059780)	ENSCARG00000059747	ENSCARG00000059735	ENSCARG00000059719	ENSCARG00000059680	ENSCARG00000059667	TFAP4 (ENSCARG00000059601)	srl (ENSCARG00000059545)	ADCY9 (ENSCARG00000059520)	CREBBP (ENSCARG00000058160)	trap1 (ENSCARG00000056757)
Cyprininae_a	ANCESTRAL SPECIES	363	ENSGT00940000164623.B.b	ENSGT00940000164108.a.a.f.a.a	ENSGT00940000158145.b.a	ENSGT01010000222313.A.b.a.c.a	ENSGT00940000159680.q.a	ENSGT00390000000053.a.i	ENSGT00390000016298.a.e	ENSGT00940000157552.s.b.e	ENSGT00940000160315.i.a	ENSGT00940000167287	ENSGT00940000160257.h	ENSGT00940000164506.b.b.g.a	ENSGT00950000182917.a.b.b.b	ENSGT00950000182916.a.b.a.a.a.b.a.b.p ##22	ENSGT00940000160286.cb	ENSGT00950000182916.a.b.a.a.a.b.a.b.o.b ##22	ENSGT00940000160286.bb.b	ENSGT00390000002810.o	ENSGT00410000026495.C.b.e	ENSGT00940000160874.a
Common carp reference	MODERN SPECIES	1	nfil3-6 (ENSCCRG00000068083)	ENSCCRG00000082702	plppr2a (ENSCCRG00000061074)	tlcd4b (ENSCCRG00000078750)	ENSCCRG00000071230	elof1 (ENSCCRG00000049602)	tmem205 (ENSCCRG00000078387)	rab3db (ENSCCRG00000049596)	epor (ENSCCRG00000049587)	swsap1 (ENSCCRG00000025776)	ENSCCRG00000049580	tspan35 (ENSCCRG00000046410)	zgc:158403 (ENSCCRG00000031234)	ENSCCRG00000073033	ENSCCRG00000060354	nfixb (ENSCCRG00000062323) ##22	nme4 (ENSCCRG00000054353)	xpo6 (ENSCCRG00000009068)	si:dkey-282h22.5 (ENSCCRG00000024407)	ENSCCRG00000038914	ENSCCRG00000026034	ENSCCRG00000024764	ENSCCRG00000022094	CREBBP (ENSCCRG00000059651)	srl (ENSCCRG00000025584)	ENSCCRG00000053060	glis2b (ENSCCRG00000027811)	CORO7 (ENSCCRG00000045084)	vasnb (ENSCCRG00000045081)	dnaja3a (ENSCCRG00000048140)	ENSCCRG00000039009
Cyprininae	ANCESTRAL SPECIES	216	ENSGT00940000158178.b.a.a	ENSGT00940000165438.a.a.a.b	ENSGT00940000164623.B.a	ENSGT00940000164108.a.a.f.a.b	ENSGT00940000158145.b.b	ENSGT01010000222313.A.b.a.c.b	ENSGT00940000159680.q.b	ENSGT00390000000053.a.j	ENSGT00390000016298.a.f	ENSGT00940000157552.s.b.f	ENSGT00940000160315.i.b	ENSGT00940000160257.g	ENSGT00940000164506.b.b.g.b	ENSGT00950000182917.a.b.b.a	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b.p ##22	ENSGT00940000160286.cb	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b.o.a ##22	ENSGT00940000160286.bb.a	ENSGT00390000002810.p	ENSGT00390000014771.b.a	ENSGT00410000026495.C.b.f	ENSGT00940000160874.b	ENSGT00390000013260.C.g.a
Cyprininae_a	ANCESTRAL SPECIES	363	ENSGT00940000158178.b.a.b	ENSGT00940000165438.a.a.a.a	ENSGT00940000164623.B.b	ENSGT00940000164108.a.a.f.a.a	ENSGT00940000158145.b.a	ENSGT01010000222313.A.b.a.c.a	ENSGT00940000159680.q.a	ENSGT00390000000053.a.i	ENSGT00390000016298.a.e	ENSGT00940000157552.s.b.e	ENSGT00940000160315.i.a	ENSGT00940000167287	ENSGT00940000160257.h	ENSGT00940000164506.b.b.g.a	ENSGT00950000182917.a.b.b.b	ENSGT00950000182916.a.b.a.a.a.b.a.b.p ##22	ENSGT00940000160286.cb	ENSGT00950000182916.a.b.a.a.a.b.a.b.o.b ##22	ENSGT00940000160286.bb.b	ENSGT00390000002810.o	ENSGT00410000026495.C.b.e	ENSGT00940000160874.a
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	392	SLC44A2 (ENSSGRG00000039048)	ENSSGRG00000039040	ENSSGRG00000039039	nfil3-6 (ENSSGRG00000039038)	ENSSGRG00000039037	plppr2a (ENSSGRG00000039036)	tlcd4b (ENSSGRG00000039035)	CNN1 (ENSSGRG00000038958)	elof1 (ENSSGRG00000038933)	tmem205 (ENSSGRG00000038931)	rab3db (ENSSGRG00000038926)	ENSSGRG00000038925	ZNF653 (ENSSGRG00000038922)	tspan35 (ENSSGRG00000038894)	zgc:158403 (ENSSGRG00000038314)	nfixb (ENSSGRG00000038273) ##22	xpo6 (ENSSGRG00000037930)	ENSSGRG00000037928	si:dkey-282h22.5 (ENSSGRG00000037927)	TSPAN10 (ENSSGRG00000037892)	ENSSGRG00000037891	ENSSGRG00000037890
Golden-line barbel	MODERN SPECIES	475		plppr2a (ENSSGRG00000048343)	tlcd4b (ENSSGRG00000048341)	CNN1 (ENSSGRG00000048340)	elof1 (ENSSGRG00000048334)	ENSSGRG00000048333	rab3db (ENSSGRG00000048332)	epor (ENSSGRG00000048327)	epor (ENSSGRG00000048325)	ENSSGRG00000048324	ENSSGRG00000048323	ENSSGRG00000048322	tspan35 (ENSSGRG00000048321)	GADD45GIP1 (ENSSGRG00000048320)	zgc:158403 (ENSSGRG00000048233)	nfixb (ENSSGRG00000048209) ##22	nme4 (ENSSGRG00000048208)	xpo6 (ENSSGRG00000048086)	antkmt (ENSSGRG00000048074)	si:dkey-282h22.5 (ENSSGRG00000048072)	TSPAN10 (ENSSGRG00000048024)	pde6ga (ENSSGRG00000048022)	ENSSGRG00000048021	ENSSGRG00000048018	trap1 (ENSSGRG00000048016)	CREBBP (ENSSGRG00000047094)	ADCY9 (ENSSGRG00000047084)	srl (ENSSGRG00000047082)	TFAP4 (ENSSGRG00000047080)	glis2b (ENSSGRG00000047079)	vasnb (ENSSGRG00000047078)
Goldfish	MODERN SPECIES	50	dhps (ENSCARG00000061648)	ENSCARG00000061638	ENSCARG00000061631	ENSCARG00000061618	ENSCARG00000061602	dhps (ENSCARG00000061595)	NHERF2 (ENSCARG00000061585)	sun1b (ENSCARG00000061156)	ENSCARG00000061099	ENSCARG00000061050	tufm (ENSCARG00000060537)	amdhd2 (ENSCARG00000060463)	ENSCARG00000060449	zgc:77748 (ENSCARG00000060442)	ENSCARG00000060418	NFIX (ENSCARG00000060414) ##22	ENSCARG00000060400 ##22	nme4 (ENSCARG00000060369)	xpo6 (ENSCARG00000060210)	si:dkey-282h22.5 (ENSCARG00000060181)	TSPAN10 (ENSCARG00000059828)	pde6ga (ENSCARG00000059780)	ENSCARG00000059747	ENSCARG00000059735	ENSCARG00000059719	ENSCARG00000059680	ENSCARG00000059667	TFAP4 (ENSCARG00000059601)	srl (ENSCARG00000059545)	ADCY9 (ENSCARG00000059520)	CREBBP (ENSCARG00000058160)
Euteleostomi	ANCESTRAL SPECIES	1101															ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Actinopterygii	ANCESTRAL SPECIES	910															ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Neopterygii	ANCESTRAL SPECIES	706															ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES	449												ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Clupeocephala	ANCESTRAL SPECIES	5	ENSGT00940000164108.a.a	ENSGT01060000251158	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00940000164506.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Huchen	MODERN SPECIES	1503			plppr2a (ENSHHUG00000038793)	tlcd4b (ENSHHUG00000038803)	CNN1 (ENSHHUG00000038811)	ELOF1 (ENSHHUG00000038820)	tmem205 (ENSHHUG00000038853)	rab3db (ENSHHUG00000038865)	epor (ENSHHUG00000038874)	ENSHHUG00000038880	ZNF653 (ENSHHUG00000038892)	tspan35 (ENSHHUG00000038897)	ENSHHUG00000038909	zgc:158403 (ENSHHUG00000038945)	ENSHHUG00000038958	NFIX (ENSHHUG00000038961) ##22
Acanthomorphata	ANCESTRAL SPECIES	25	ENSGT00940000165438.a.a	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00940000155774.b	ENSGT01010000222553	ENSGT00940000162350.b.a	ENSGT00940000162350.b.b	ENSGT00710000107036.a.a	ENSGT00390000003753	ENSGT00390000013260.A.b.a	ENSGT00950000182961.a.b.b	ENSGT00940000157534.a.b	ENSGT00940000155083.a	ENSGT01000000214705	ENSGT00940000175473
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b	ENSGT00950000182803.A.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000157022	ENSGT00940000158025.a.a.b.h	ENSGT00950000182803.A.a.a	ENSGT00940000158833.a.a	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c
Ovalentaria_B	DUPLICATION
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b.a ##22
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b.a ##22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b.a ##22
Amphiprion	ANCESTRAL SPECIES		ENSGT00940000153469.a.a.l	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.b	ENSGT00390000009016	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b.a ##22	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000181262	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B	ENSGT00940000159089
Clown anemonefish	MODERN SPECIES	1395	tefm (ENSAOCG00000016983)	atad5b (ENSAOCG00000016967)	suz12b (ENSAOCG00000016893)	utp6 (ENSAOCG00000016812)	rab11fip4b (ENSAOCG00000016771)	ENSAOCG00000016679	ENSAOCG00000016658	ENSAOCG00000016646	ENSAOCG00000016628	ENSAOCG00000016599	elof1 (ENSAOCG00000016573)	pld6 (ENSAOCG00000016563)	RAB3D (ENSAOCG00000001150)	tspan34 (ENSAOCG00000001145)	dand5 (ENSAOCG00000001140)	NFIX (ENSAOCG00000016512) ##22
Cichlidae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b.a ##22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b.a ##22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b.a ##22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b.a ##22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b.a ##22
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000170963	ENSGT00940000166223.b.a	ENSGT00940000166223.b.b.a.a	ENSGT00940000166223.b.b.a.b.b	ENSGT00940000166223.b.b.a.b.a	ENSGT00940000166223.b.b.b	ENSGT00940000173081	ENSGT00940000158145.a	ENSGT00390000000053.a	ENSGT00390000004368	ENSGT00940000157552.s.a	ENSGT00940000164506.b.a	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b.a ##22	ENSGT00950000182916.a.b.a.a.a.b.a.a ##22	ENSGT00940000163721	ENSGT00390000017673.b.k	ENSGT00940000165343.c.a	ENSGT00940000166140	ENSGT00950000182944.A.b.d.f.b	ENSGT00950000182944.A.b.d.e	ENSGT00950000182944.A.b.d.f.a	ENSGT00940000157140.b.b.a	ENSGT00470000042444	ENSGT00940000161143	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000159543	ENSGT00940000165948	ENSGT00940000159801.B
Zebra mbuna	MODERN SPECIES	1109	suz12b (ENSMZEG00005023896)	utp6 (ENSMZEG00005023895)	rab11fip4b (ENSMZEG00005023892)	ENSMZEG00005023891	ENSMZEG00005023890	ENSMZEG00005023889	ENSMZEG00005023888	ENSMZEG00005023887	ENSMZEG00005023886	PLPPR2 (ENSMZEG00005023885)	elof1 (ENSMZEG00005023883)	pld6 (ENSMZEG00005023882)	RAB3D (ENSMZEG00005023881)	tspan34 (ENSMZEG00005023880)	dand5 (ENSMZEG00005023879)	NFIX (ENSMZEG00005023878) ##22	ENSMZEG00005023877	NEU3 (ENSMZEG00005023876)	NEU3 (ENSMZEG00005023875)	ENSMZEG00005023874	ENSMZEG00005023873	ENSMZEG00005023872	fdx2 (ENSMZEG00005023871)	s1pr5b (ENSMZEG00005023870)	keap1b (ENSMZEG00005023869)	ENSMZEG00005023868	CDKN2D (ENSMZEG00005023867)	ap1m2 (ENSMZEG00005023866)	ENSMZEG00005023865	ENSMZEG00005023864	ENSMZEG00005023863
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b.b ##22
Pomacentridae	ANCESTRAL SPECIES	31	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b.b ##22	ENSGT00940000177692	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b
Pomacentridae_A	ANCESTRAL SPECIES	21	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b.b ##22	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000158833.a.a	ENSGT00950000182803.A.a.a	ENSGT00940000158025.a.a.b.h	ENSGT00940000157022	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135
Amphiprion	ANCESTRAL SPECIES	25	ENSGT00940000164623.B	ENSGT00940000164108.a.a	ENSGT00940000169385	ENSGT00940000158145.b	ENSGT01010000222313.A.b.a.c	ENSGT00940000159680	ENSGT00390000000053.b	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b.b ##22	ENSGT00950000182916.a.b.a.a.a.b.a.b ##22	ENSGT00390000012078.a.b	ENSGT00530000064157.b	ENSGT00940000158833.a.a	ENSGT00950000182803.A.a.a	ENSGT00940000158025.a.a.b.h	ENSGT00940000157022	ENSGT00390000000022.a	ENSGT00390000008314	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c	ENSGT00940000161135
Clown anemonefish	MODERN SPECIES	2722														zgc:158403 (ENSAOCG00000011446)	GADD45GIP1 (ENSAOCG00000011465)	ENSAOCG00000011477 ##22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Oryzias	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Chinese medaka	MODERN SPECIES	400	ENSOSIG00000016847	nfil3-6 (ENSOSIG00000016849)	plppr2a (ENSOSIG00000016851)	tmem205 (ENSOSIG00000016852)	tlcd4b (ENSOSIG00000016853)	CNN1 (ENSOSIG00000016854)	ELOF1 (ENSOSIG00000016858)	rab3db (ENSOSIG00000016862)	epor (ENSOSIG00000016865)	ENSOSIG00000016867	ZNF653 (ENSOSIG00000016869)	tspan35 (ENSOSIG00000016870)	ENSOSIG00000016872	zgc:158403 (ENSOSIG00000016907)	ENSOSIG00000017078	NFIX (ENSOSIG00000017081) ##22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Turquoise killifish	MODERN SPECIES	165																NFIX (ENSNFUG00015013435) ##22
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Poecilia	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
NAME_6	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Amazon molly	MODERN SPECIES	1094																ENSPFOG00000008414 ##22
Sailfin molly	MODERN SPECIES	899														frem1b (ENSPLAG00000016068)	wdr18 (ENSPLAG00000016014)	ENSPLAG00000000363 ##22	ENSPLAG00000015996	ENSPLAG00000015986	ENSPLAG00000015973	ENSPLAG00000015958	ENSPLAG00000015952
Guppy	MODERN SPECIES	456	stx6 (ENSPREG00000005855)	GRIN3B (ENSPREG00000005839)	TMEM259 (ENSPREG00000005803)	PLPPR3 (ENSPREG00000005779)	med16 (ENSPREG00000005747)	ENSPREG00000005697	MAP1S (ENSPREG00000005678)	trmt13 (ENSPREG00000005645)	lrrc39 (ENSPREG00000005618)	dbt (ENSPREG00000005602)	ENSPREG00000005579	nrd1b (ENSPREG00000005540)	ENSPREG00000005519	wdr18 (ENSPREG00000005443)	frem1b (ENSPREG00000004840)	ENSPREG00000004743 ##22	tm2d1 (ENSPREG00000004735)	ENSPREG00000004632	ENSPREG00000004590	ENSPREG00000004557	ENSPREG00000004459	ENSPREG00000004306	thop1 (ENSPREG00000004258)	ENSPREG00000004036	ENSPREG00000004006	si:ch1073-67j19.2 (ENSPREG00000003966)	ENSPREG00000003894	ENSPREG00000003461	ENSPREG00000003397	ENSPREG00000003393	zgc:113223 (ENSPREG00000003376)
Sarcopterygii	ANCESTRAL SPECIES	189	ENSGT00940000163721	ENSGT00390000012267	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00940000157700	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000166140
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	419	SLC44A2 (ENSLACG00000005761)	ENSLACG00000010459	ENSLACG00000010478	ENSLACG00000011962	NANOS3 (ENSLACG00000013286)	ENSLACG00000013365	CC2D1A (ENSLACG00000013556)	PODNL1 (ENSLACG00000014115)	DCAF15 (ENSLACG00000014304)	RFX1 (ENSLACG00000022433)	ENSLACG00000022668	RAD23A (ENSLACG00000014966)	zgc:158403 (ENSLACG00000015276)	GADD45GIP1 (ENSLACG00000015380)	ENSLACG00000015475	ENSLACG00000016266 ##22	NFIX (ENSLACG00000016773) ##22	ENSLACG00000017036
Coelacanth	MODERN SPECIES	419	ENSLACG00000010459	ENSLACG00000010478	ENSLACG00000011962	NANOS3 (ENSLACG00000013286)	ENSLACG00000013365	CC2D1A (ENSLACG00000013556)	PODNL1 (ENSLACG00000014115)	DCAF15 (ENSLACG00000014304)	RFX1 (ENSLACG00000022433)	ENSLACG00000022668	RAD23A (ENSLACG00000014966)	zgc:158403 (ENSLACG00000015276)	GADD45GIP1 (ENSLACG00000015380)	ENSLACG00000015475	ENSLACG00000016266 ##22	NFIX (ENSLACG00000016773) ##22	ENSLACG00000017036
Tetrapoda	ANCESTRAL SPECIES	45	ENSGT00390000010157.b	ENSGT00390000018541	ENSGT00940000156887	ENSGT00940000161046	ENSGT00940000161012	ENSGT00940000159313	ENSGT00940000164506	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000016298.a
Anura	ANCESTRAL SPECIES	160									ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00940000157552
Leishan spiny toad	MODERN SPECIES	6	DOCK6 (ENSLLEG00000001731)	ENSLLEG00000001491	ENSLLEG00000001449	GCDH (ENSLLEG00000001368)	ENSLLEG00000001351	ENSLLEG00000001336	ENSLLEG00000001304	FARSA (ENSLLEG00000001265)	CALR (ENSLLEG00000001233)	ENSLLEG00000001107	ENSLLEG00000001081	GADD45GIP1 (ENSLLEG00000001073)	ENSLLEG00000001067	ENSLLEG00000001059	ENSLLEG00000001051	NFIX (ENSLLEG00000000722) ##22	ENSLLEG00000000654	LYL1 (ENSLLEG00000000639)	ENSLLEG00000000620	ACP5 (ENSLLEG00000000595)	ELOF1 (ENSLLEG00000023709)	CNN1 (ENSLLEG00000023654)	ENSLLEG00000023605	ENSLLEG00000023588	ENSLLEG00000023565	ENSLLEG00000023544	ENSLLEG00000023479	ECSIT (ENSLLEG00000023415)	ENSLLEG00000023378	ZNF653 (ENSLLEG00000023316)	ELAVL3 (ENSLLEG00000022639)
Frog	MODERN SPECIES	3	ENSXETG00000045545	ENSXETG00000049159	ENSXETG00000046632	ENSXETG00000042517	ENSXETG00000048778	ENSXETG00000043265	ENSXETG00000040250	lgals9 (ENSXETG00000007928)	gcdh (ENSXETG00000007932)	syce2 (ENSXETG00000033611)	farsa (ENSXETG00000007936)	calr (ENSXETG00000007937)	ENSXETG00000007938	gadd45gip1 (ENSXETG00000007940)	dand5 (ENSXETG00000046702)	nfix (ENSXETG00000016718) ##22	lyl1 (ENSXETG00000038725)	acp5 (ENSXETG00000016725)	elof1 (ENSXETG00000016731)	cnn1 (ENSXETG00000016732)	tlcd4.2 (ENSXETG00000016736)	ecsit (ENSXETG00000016738)	znf653 (ENSXETG00000016739)	elavl3 (ENSXETG00000016741)	prkcsh (ENSXETG00000016744)	ENSXETG00000042295	cdk4 (ENSXETG00000016745)	rgl3 (ENSXETG00000016747)	ENSXETG00000046899	ENSXETG00000044554	tspan16 (ENSXETG00000016752)
Amniota	ANCESTRAL SPECIES	31	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201
Mammalia	ANCESTRAL SPECIES	42	ENSGT00940000161361	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00390000018038	ENSGT00530000064123	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059
Platypus	MODERN SPECIES	85	TNPO2 (ENSOANG00000010051)	ENSOANG00000049168	GET3 (ENSOANG00000007648)	BEST2 (ENSOANG00000045815)	HOOK2 (ENSOANG00000014251)	JUNB (ENSOANG00000007596)	PRDX2 (ENSOANG00000009080)	ENSOANG00000009787	ENSOANG00000007093	ENSOANG00000047645	GCDH (ENSOANG00000009077)	FARSA (ENSOANG00000043112)	CALR (ENSOANG00000009799)	RAD23A (ENSOANG00000040687)	GADD45GIP1 (ENSOANG00000045483)	NFIX (ENSOANG00000047105) ##22	LYL1 (ENSOANG00000006846)	NACC1 (ENSOANG00000006845)	IER2 (ENSOANG00000041821)	CACNA1A (ENSOANG00000012652)	ENSOANG00000040676	YJU2B (ENSOANG00000001226)	MRI1 (ENSOANG00000012399)	ENSOANG00000047359	ZSWIM4 (ENSOANG00000005337)	MYDGF (ENSOANG00000041957)	TNFAIP8L1 (ENSOANG00000007043)	SEMA6B (ENSOANG00000045870)	ENSOANG00000013709	ENSOANG00000013710	HDGFL2 (ENSOANG00000040438)
Theria	ANCESTRAL SPECIES	29	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b
Opossum	MODERN SPECIES	2	ENSMODG00000006773	ENSMODG00000046640	ENSMODG00000045793	ENSMODG00000023795	ENSMODG00000028680	monDomV1R1220 (ENSMODG00000039528)	monDomV1R1219 (ENSMODG00000047743)	DNASE2 (ENSMODG00000011483)	KLF1 (ENSMODG00000011491)	GCDH (ENSMODG00000011508)	ENSMODG00000043191	FARSA (ENSMODG00000011519)	CALR (ENSMODG00000011530)	RAD23A (ENSMODG00000011539)	GADD45GIP1 (ENSMODG00000011545)	NFIX (ENSMODG00000011587) ##22	ENSMODG00000011593	TRMT1 (ENSMODG00000011619)	ENSMODG00000011626	IER2 (ENSMODG00000023954)	CACNA1A (ENSMODG00000011749)	ENSMODG00000011755	YJU2B (ENSMODG00000011863)	MRI1 (ENSMODG00000011870)	C19orf53 (ENSMODG00000011876)	ZSWIM4 (ENSMODG00000011902)	ENSMODG00000023964	ENSMODG00000050577	CC2D1A (ENSMODG00000011949)	PODNL1 (ENSMODG00000011977)	ENSMODG00000012004
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856.b	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b
Tasmanian devil	MODERN SPECIES		BEST2 (ENSSHAG00000015677)	HOOK2 (ENSSHAG00000015654)	JUNB (ENSSHAG00000031673)	PRDX2 (ENSSHAG00000015596)	RNASEH2A (ENSSHAG00000021970)	ENSSHAG00000029919	MAST1 (ENSSHAG00000015366)	ENSSHAG00000027697	GCDH (ENSSHAG00000015183)	ENSSHAG00000015176	FARSA (ENSSHAG00000015006)	CALR (ENSSHAG00000022448)	RAD23A (ENSSHAG00000014944)	GADD45GIP1 (ENSSHAG00000030763)	ENSSHAG00000031388	NFIX (ENSSHAG00000014449) ##22	ENSSHAG00000030868	TRMT1 (ENSSHAG00000014381)	IER2 (ENSSHAG00000022046)	CACNA1A (ENSSHAG00000013591)	ENSSHAG00000031108	YJU2B (ENSSHAG00000011586)	MRI1 (ENSSHAG00000011531)	C19orf53 (ENSSHAG00000027685)	ZSWIM4 (ENSSHAG00000011275)	ENSSHAG00000026160	ENSSHAG00000021049	CC2D1A (ENSSHAG00000010380)	PODNL1 (ENSSHAG00000010334)	DCAF15 (ENSSHAG00000010157)	RFX1 (ENSSHAG00000009998)
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856.b	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856.b	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b
Common wonbat	MODERN SPECIES	580	HOOK2 (ENSVURG00010012454)	JUNB (ENSVURG00010012482)	PRDX2 (ENSVURG00010012491)	RNASEH2A (ENSVURG00010012512)	ENSVURG00010012521	ENSVURG00010012528	ENSVURG00010012540	DNASE2 (ENSVURG00010012555)	ENSVURG00010012587	GCDH (ENSVURG00010012611)	FARSA (ENSVURG00010012630)	CALR (ENSVURG00010012640)	RAD23A (ENSVURG00010012654)	GADD45GIP1 (ENSVURG00010012667)	ENSVURG00010012675	NFIX (ENSVURG00010012686) ##22	LYL1 (ENSVURG00010012714)	TRMT1 (ENSVURG00010012721)	NACC1 (ENSVURG00010012733)	ENSVURG00010012740	CACNA1A (ENSVURG00010013847)	ENSVURG00010024168	ENSVURG00010024170	MRI1 (ENSVURG00010024173)	C19orf53 (ENSVURG00010024176)	ZSWIM4 (ENSVURG00010024179)	ENSVURG00010024197	ENSVURG00010024198	CC2D1A (ENSVURG00010024206)	PODNL1 (ENSVURG00010024211)	DCAF15 (ENSVURG00010024215)
koala	MODERN SPECIES	58	HOOK2 (ENSPCIG00000012585)	JUNB (ENSPCIG00000014125)	PRDX2 (ENSPCIG00000014122)	RNASEH2A (ENSPCIG00000014119)	ENSPCIG00000014111	MAST1 (ENSPCIG00000014093)	DNASE2 (ENSPCIG00000014087)	ENSPCIG00000014086	GCDH (ENSPCIG00000019299)	ENSPCIG00000019297	FARSA (ENSPCIG00000019294)	CALR (ENSPCIG00000019290)	RAD23A (ENSPCIG00000019286)	ENSPCIG00000019285	ENSPCIG00000033702	NFIX (ENSPCIG00000019280) ##22	LYL1 (ENSPCIG00000019276)	TRMT1 (ENSPCIG00000019273)	NACC1 (ENSPCIG00000019270)	IER2 (ENSPCIG00000019269)	CACNA1A (ENSPCIG00000019267)	ENSPCIG00000019264	YJU2B (ENSPCIG00000019033)	MRI1 (ENSPCIG00000019032)	C19orf53 (ENSPCIG00000019031)	ZSWIM4 (ENSPCIG00000019028)	ENSPCIG00000033468	ENSPCIG00000018374	CC2D1A (ENSPCIG00000029766)	PODNL1 (ENSPCIG00000029767)	DCAF15 (ENSPCIG00000029768)
Wallaby	MODERN SPECIES	948																NFIX (ENSMEUG00000003176) ##22
Eutheria	ANCESTRAL SPECIES	27	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Atlantogenata	ANCESTRAL SPECIES	41	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Afrotheria	ANCESTRAL SPECIES	38	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Afrotheria_a	ANCESTRAL SPECIES	39	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b
Elephant	MODERN SPECIES	270	HOOK2 (ENSLAFG00000021382)	JUNB (ENSLAFG00000008530)	PRDX2 (ENSLAFG00000008526)	RNASEH2A (ENSLAFG00000015571)	RTBDN (ENSLAFG00000016111)	MAST1 (ENSLAFG00000016119)	DNASE2 (ENSLAFG00000016136)	KLF1 (ENSLAFG00000016145)	GCDH (ENSLAFG00000016147)	ENSLAFG00000027765	FARSA (ENSLAFG00000016154)	CALR (ENSLAFG00000016157)	RAD23A (ENSLAFG00000029782)	GADD45GIP1 (ENSLAFG00000027811)	DAND5 (ENSLAFG00000002928)	NFIX (ENSLAFG00000017040) ##22	LYL1 (ENSLAFG00000005235)	TRMT1 (ENSLAFG00000014072)	NACC1 (ENSLAFG00000012921)	STX10 (ENSLAFG00000029308)	CACNA1A (ENSLAFG00000021838)	YJU2B (ENSLAFG00000027397)	MRI1 (ENSLAFG00000012910)	C19orf53 (ENSLAFG00000012918)	ZSWIM4 (ENSLAFG00000011614)	NANOS3 (ENSLAFG00000008480)	ENSLAFG00000010734	CC2D1A (ENSLAFG00000010738)	ENSLAFG00000027060	DCAF15 (ENSLAFG00000010147)	RFX1 (ENSLAFG00000010160)
Hyrax	MODERN SPECIES	5989															DAND5 (ENSPCAG00000003590)	NFIX (ENSPCAG00000003605) ##22	LYL1 (ENSPCAG00000003676)	TRMT1 (ENSPCAG00000003698)	NACC1 (ENSPCAG00000003817)	STX10 (ENSPCAG00000003862)	CACNA1A (ENSPCAG00000003931)
Tenrec	MODERN SPECIES	135																NFIX (ENSETEG00000003584) ##22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Armadillo	MODERN SPECIES	3307															ENSDNOG00000043099	NFIX (ENSDNOG00000041466) ##22
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.a.b.b ##22
Common shrew	MODERN SPECIES	7355																NFIX (ENSSARG00000002265) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Artiodactyla	ANCESTRAL SPECIES	22	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Artiodactyla_a	ANCESTRAL SPECIES	23	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Camelidae	ANCESTRAL SPECIES	69	ENSGT00940000161361	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b
Arabian camel	MODERN SPECIES	14	HOOK2 (ENSCDRG00005022199)	JUNB (ENSCDRG00005022198)	PRDX2 (ENSCDRG00005022195)	THSD8 (ENSCDRG00005022194)	RNASEH2A (ENSCDRG00005022193)	RTBDN (ENSCDRG00005022192)	MAST1 (ENSCDRG00005022190)	DNASE2 (ENSCDRG00005022189)	KLF1 (ENSCDRG00005022188)	GCDH (ENSCDRG00005022187)	FARSA (ENSCDRG00005022184)	CALR (ENSCDRG00005022183)	RAD23A (ENSCDRG00005022180)	GADD45GIP1 (ENSCDRG00005022178)	ENSCDRG00005022176	NFIX (ENSCDRG00005022174) ##22	LYL1 (ENSCDRG00005022168)	TRMT1 (ENSCDRG00005022165)	NACC1 (ENSCDRG00005022164)	STX10 (ENSCDRG00005022163)	IER2 (ENSCDRG00005022160)	CACNA1A (ENSCDRG00005018624)	YJU2B (ENSCDRG00005017211)	MRI1 (ENSCDRG00005017143)	C19orf53 (ENSCDRG00005017111)	ZSWIM4 (ENSCDRG00005017026)	NANOS3 (ENSCDRG00005016971)	ENSCDRG00005016955	ENSCDRG00005016926	PODNL1 (ENSCDRG00005016538)	DCAF15 (ENSCDRG00005016473)
Artiodactyla_b	ANCESTRAL SPECIES	23	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Pecora	ANCESTRAL SPECIES		ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000020173	BEST2 (ENSCHYG00000020079)	HOOK2 (ENSCHYG00000019849)	JUNB (ENSCHYG00000019794)	ENSCHYG00000019679	RNASEH2A (ENSCHYG00000019565)	RTBDN (ENSCHYG00000019447)	ENSCHYG00000019426	MAST1 (ENSCHYG00000019171)	DNASE2 (ENSCHYG00000019086)	KLF1 (ENSCHYG00000019002)	GCDH (ENSCHYG00000018661)	FARSA (ENSCHYG00000018361)	ENSCHYG00000017855	GADD45GIP1 (ENSCHYG00000017788)	NFIX (ENSCHYG00000016512) ##22	LYL1 (ENSCHYG00000016421)	TRMT1 (ENSCHYG00000016033)	NACC1 (ENSCHYG00000015883)	STX10 (ENSCHYG00000015356)	IER2 (ENSCHYG00000015316)	CACNA1A (ENSCHYG00000009142)	YJU2B (ENSCHYG00000008722)	MRI1 (ENSCHYG00000008660)	C19orf53 (ENSCHYG00000008638)	ZSWIM4 (ENSCHYG00000008457)	NANOS3 (ENSCHYG00000008374)	ENSCHYG00000008348	CC2D1A (ENSCHYG00000008230)	PODNL1 (ENSCHYG00000008102)	DCAF15 (ENSCHYG00000007994)
Percora_a	ANCESTRAL SPECIES		ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Siberian musk deer	MODERN SPECIES	34	HOOK2 (ENSMMSG00000016914)	JUNB (ENSMMSG00000016968)	ENSMMSG00000016984	THSD8 (ENSMMSG00000017010)	RNASEH2A (ENSMMSG00000017025)	RTBDN (ENSMMSG00000017054)	MAST1 (ENSMMSG00000017118)	DNASE2 (ENSMMSG00000017335)	KLF1 (ENSMMSG00000017358)	GCDH (ENSMMSG00000017382)	SYCE2 (ENSMMSG00000017412)	FARSA (ENSMMSG00000017435)	ENSMMSG00000017464	RAD23A (ENSMMSG00000017530)	GADD45GIP1 (ENSMMSG00000017735)	NFIX (ENSMMSG00000017773) ##22	LYL1 (ENSMMSG00000017977)	TRMT1 (ENSMMSG00000018011)	NACC1 (ENSMMSG00000018197)	STX10 (ENSMMSG00000018243)	IER2 (ENSMMSG00000018376)	CACNA1A (ENSMMSG00000019062)	YJU2B (ENSMMSG00000024343)	MRI1 (ENSMMSG00000024345)	C19orf53 (ENSMMSG00000024346)	ZSWIM4 (ENSMMSG00000024347)	NANOS3 (ENSMMSG00000024352)	ENSMMSG00000024353	CC2D1A (ENSMMSG00000024357)	PODNL1 (ENSMMSG00000024362)	DCAF15 (ENSMMSG00000024364)
Bovidae	ANCESTRAL SPECIES		ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Bos	ANCESTRAL SPECIES	3	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.r	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.s	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Bos_a	ANCESTRAL SPECIES	57	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.r	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.s	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Wild yak	MODERN SPECIES	1191	BEST2 (ENSBMUG00000014141)	HOOK2 (ENSBMUG00000014550)	PRDX2 (ENSBMUG00000014704)	THSD8 (ENSBMUG00000014710)	RNASEH2A (ENSBMUG00000014723)	RTBDN (ENSBMUG00000014745)	MAST1 (ENSBMUG00000014789)	DNASE2 (ENSBMUG00000014821)	KLF1 (ENSBMUG00000014835)	GCDH (ENSBMUG00000014853)	SYCE2 (ENSBMUG00000014874)	FARSA (ENSBMUG00000014925)	CALR (ENSBMUG00000014947)	RAD23A (ENSBMUG00000014991)	GADD45GIP1 (ENSBMUG00000015011)	NFIX (ENSBMUG00000015081) ##22	LYL1 (ENSBMUG00000015125)	TRMT1 (ENSBMUG00000015157)	NACC1 (ENSBMUG00000015196)	STX10 (ENSBMUG00000015238)	IER2 (ENSBMUG00000015268)	CACNA1A (ENSBMUG00000017000)	OR4E2 (ENSBMUG00000017584)	OR10G2 (ENSBMUG00000017604)	OR10G3 (ENSBMUG00000017624)	ENSBMUG00000017637	SALL2 (ENSBMUG00000017662)	METTL3 (ENSBMUG00000017682)	TOX4 (ENSBMUG00000017709)	RAB2B (ENSBMUG00000017773)	CHD8 (ENSBMUG00000018147)
Domestic yak	MODERN SPECIES	27	HOOK2 (ENSBGRG00000005838)	JUNB (ENSBGRG00000006220)	PRDX2 (ENSBGRG00000006234)	THSD8 (ENSBGRG00000006299)	RNASEH2A (ENSBGRG00000006330)	RTBDN (ENSBGRG00000006406)	MAST1 (ENSBGRG00000006558)	DNASE2 (ENSBGRG00000006722)	KLF1 (ENSBGRG00000006745)	GCDH (ENSBGRG00000006775)	SYCE2 (ENSBGRG00000006880)	FARSA (ENSBGRG00000006949)	CALR (ENSBGRG00000007159)	RAD23A (ENSBGRG00000007230)	GADD45GIP1 (ENSBGRG00000007568)	NFIX (ENSBGRG00000007656) ##22	LYL1 (ENSBGRG00000008585)	TRMT1 (ENSBGRG00000008629)	ENSBGRG00000008808	NACC1 (ENSBGRG00000008843)	STX10 (ENSBGRG00000008914)	IER2 (ENSBGRG00000009223)	CACNA1A (ENSBGRG00000009642)	YJU2B (ENSBGRG00000021535)	MRI1 (ENSBGRG00000021573)	C19orf53 (ENSBGRG00000021611)	ZSWIM4 (ENSBGRG00000021668)	NANOS3 (ENSBGRG00000021964)	ENSBGRG00000021979	CC2D1A (ENSBGRG00000022053)	PODNL1 (ENSBGRG00000022916)
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000161361	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.r	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.s	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Cow	MODERN SPECIES	26	BEST2 (ENSBTAG00000025652)	HOOK2 (ENSBTAG00000008654)	JUNB (ENSBTAG00000012046)	PRDX2 (ENSBTAG00000012062)	RNASEH2A (ENSBTAG00000009661)	RTBDN (ENSBTAG00000006077)	MAST1 (ENSBTAG00000006080)	DNASE2 (ENSBTAG00000006082)	KLF1 (ENSBTAG00000006083)	GCDH (ENSBTAG00000016211)	SYCE2 (ENSBTAG00000016213)	FARSA (ENSBTAG00000021374)	CALR (ENSBTAG00000015114)	RAD23A (ENSBTAG00000015116)	GADD45GIP1 (ENSBTAG00000015117)	NFIX (ENSBTAG00000018229) ##22	LYL1 (ENSBTAG00000019329)	TRMT1 (ENSBTAG00000019325)	NACC1 (ENSBTAG00000016350)	STX10 (ENSBTAG00000016352)	IER2 (ENSBTAG00000016354)	CACNA1A (ENSBTAG00000014828)	YJU2B (ENSBTAG00000002516)	MRI1 (ENSBTAG00000002524)	C7H19orf53 (ENSBTAG00000002525)	ZSWIM4 (ENSBTAG00000002527)	NANOS3 (ENSBTAG00000000399)	BRME1 (ENSBTAG00000006064)	CC2D1A (ENSBTAG00000006068)	PODNL1 (ENSBTAG00000006073)	DCAF15 (ENSBTAG00000008841)
American bison	MODERN SPECIES	3279	BEST2 (ENSBBBG00000018649)	HOOK2 (ENSBBBG00000009147)	PRDX2 (ENSBBBG00000008767)	THSD8 (ENSBBBG00000018770)	RNASEH2A (ENSBBBG00000018775)	RTBDN (ENSBBBG00000018793)	MAST1 (ENSBBBG00000018956)	DNASE2 (ENSBBBG00000018969)	KLF1 (ENSBBBG00000004825)	GCDH (ENSBBBG00000004838)	SYCE2 (ENSBBBG00000004849)	FARSA (ENSBBBG00000019049)	CALR (ENSBBBG00000004880)	RAD23A (ENSBBBG00000019119)	ENSBBBG00000008167	NFIX (ENSBBBG00000019204) ##22	LYL1 (ENSBBBG00000019215)	TRMT1 (ENSBBBG00000019284)	NACC1 (ENSBBBG00000019295)	STX10 (ENSBBBG00000005006)	IER2 (ENSBBBG00000005013)	CACNA1A (ENSBBBG00000019380)	YJU2B (ENSBBBG00000005153)	MRI1 (ENSBBBG00000019433)	C19orf53 (ENSBBBG00000019446)	ZSWIM4 (ENSBBBG00000007955)	ENSBBBG00000019499	CC2D1A (ENSBBBG00000019553)	PODNL1 (ENSBBBG00000019637)	DCAF15 (ENSBBBG00000005189)	RFX1 (ENSBBBG00000005338)
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Goat	MODERN SPECIES	26	BEST2 (ENSCHIG00000009210)	HOOK2 (ENSCHIG00000017730)	JUNB (ENSCHIG00000007846)	ENSCHIG00000008839	RNASEH2A (ENSCHIG00000014460)	RTBDN (ENSCHIG00000018795)	MAST1 (ENSCHIG00000012078)	DNASE2 (ENSCHIG00000018237)	KLF1 (ENSCHIG00000024201)	GCDH (ENSCHIG00000008032)	SYCE2 (ENSCHIG00000023183)	FARSA (ENSCHIG00000022617)	CALR (ENSCHIG00000023446)	RAD23A (ENSCHIG00000017626)	GADD45GIP1 (ENSCHIG00000017823)	NFIX (ENSCHIG00000022384) ##22	LYL1 (ENSCHIG00000027128)	TRMT1 (ENSCHIG00000013569)	NACC1 (ENSCHIG00000023771)	STX10 (ENSCHIG00000018262)	IER2 (ENSCHIG00000007994)	CACNA1A (ENSCHIG00000016788)	YJU2B (ENSCHIG00000013694)	MRI1 (ENSCHIG00000019343)	C19orf53 (ENSCHIG00000018093)	ZSWIM4 (ENSCHIG00000007749)	NANOS3 (ENSCHIG00000007837)	ENSCHIG00000014143	CC2D1A (ENSCHIG00000018476)	PODNL1 (ENSCHIG00000021297)	DCAF15 (ENSCHIG00000014809)
Rambouillet Sheep	MODERN SPECIES	21	ASNA1 (ENSOARG00020011930)	BEST2 (ENSOARG00020011833)	JUNB (ENSOARG00020011427)	PRDX2 (ENSOARG00020011331)	THSD8 (ENSOARG00020011281)	RNASEH2A (ENSOARG00020011239)	RTBDN (ENSOARG00020011079)	MAST1 (ENSOARG00020010455)	DNASE2 (ENSOARG00020010363)	KLF1 (ENSOARG00020010329)	GCDH (ENSOARG00020010253)	FARSA (ENSOARG00020010040)	CALR (ENSOARG00020009931)	RAD23A (ENSOARG00020009840)	GADD45GIP1 (ENSOARG00020009801)	NFIX (ENSOARG00020008684) ##22	LYL1 (ENSOARG00020008580)	TRMT1 (ENSOARG00020008381)	NACC1 (ENSOARG00020008294)	STX10 (ENSOARG00020008210)	IER2 (ENSOARG00020008180)	ENSOARG00020008152	CACNA1A (ENSOARG00020002091)	YJU2B (ENSOARG00020001677)	MRI1 (ENSOARG00020001665)	C19orf53 (ENSOARG00020001650)	ZSWIM4 (ENSOARG00020001605)	NANOS3 (ENSOARG00020001560)	ENSOARG00020001554	CC2D1A (ENSOARG00020001498)	PODNL1 (ENSOARG00020001475)
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a.m	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Blue whale	MODERN SPECIES	14	HOOK2 (ENSBMSG00010005872)	JUNB (ENSBMSG00010005909)	PRDX2 (ENSBMSG00010005921)	THSD8 (ENSBMSG00010005934)	RNASEH2A (ENSBMSG00010005947)	RTBDN (ENSBMSG00010005967)	MAST1 (ENSBMSG00010006004)	DNASE2 (ENSBMSG00010006057)	KLF1 (ENSBMSG00010006067)	GCDH (ENSBMSG00010006092)	ENSBMSG00010006111	FARSA (ENSBMSG00010006124)	ENSBMSG00010006144	RAD23A (ENSBMSG00010006168)	GADD45GIP1 (ENSBMSG00010006182)	NFIX (ENSBMSG00010006215) ##22	LYL1 (ENSBMSG00010006239)	TRMT1 (ENSBMSG00010006254)	NACC1 (ENSBMSG00010006289)	STX10 (ENSBMSG00010006307)	IER2 (ENSBMSG00010006332)	CACNA1A (ENSBMSG00010007066)	YJU2B (ENSBMSG00010011086)	MRI1 (ENSBMSG00010011099)	C19orf53 (ENSBMSG00010011111)	ZSWIM4 (ENSBMSG00010011126)	NANOS3 (ENSBMSG00010011182)	ENSBMSG00010011193	CC2D1A (ENSBMSG00010011212)	PODNL1 (ENSBMSG00010011253)	DCAF15 (ENSBMSG00010011283)
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a.m	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a.m	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a.m	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a.m	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Beluga whale	MODERN SPECIES	27	BEST2 (ENSDLEG00000010397)	HOOK2 (ENSDLEG00000010436)	JUNB (ENSDLEG00000010512)	PRDX2 (ENSDLEG00000010520)	RNASEH2A (ENSDLEG00000010529)	RTBDN (ENSDLEG00000010548)	MAST1 (ENSDLEG00000010566)	DNASE2 (ENSDLEG00000010624)	GCDH (ENSDLEG00000010654)	KLF1 (ENSDLEG00000010698)	SYCE2 (ENSDLEG00000010725)	FARSA (ENSDLEG00000010737)	CALR (ENSDLEG00000010762)	RAD23A (ENSDLEG00000010781)	GADD45GIP1 (ENSDLEG00000010807)	NFIX (ENSDLEG00000010831) ##22	LYL1 (ENSDLEG00000010935)	TRMT1 (ENSDLEG00000010945)	NACC1 (ENSDLEG00000010956)	STX10 (ENSDLEG00000010977)	IER2 (ENSDLEG00000011026)	CACNA1A (ENSDLEG00000012308)	CCDC130 (ENSDLEG00000021849)	MRI1 (ENSDLEG00000021850)	CUNH19orf53 (ENSDLEG00000021851)	ZSWIM4 (ENSDLEG00000021852)	NANOS3 (ENSDLEG00000021858)	ENSDLEG00000021859	CC2D1A (ENSDLEG00000021860)	PODNL1 (ENSDLEG00000021861)	DCAF15 (ENSDLEG00000021862)
Narwhal	MODERN SPECIES	298	JUNB (ENSMMNG00015004931)	PRDX2 (ENSMMNG00015004919)	THSD8 (ENSMMNG00015004915)	RNASEH2A (ENSMMNG00015004907)	RTBDN (ENSMMNG00015004901)	MAST1 (ENSMMNG00015004880)	DNASE2 (ENSMMNG00015004869)	KLF1 (ENSMMNG00015004865)	GCDH (ENSMMNG00015004861)	SYCE2 (ENSMMNG00015004858)	FARSA (ENSMMNG00015004851)	ENSMMNG00015004845	RAD23A (ENSMMNG00015004840)	GADD45GIP1 (ENSMMNG00015005584)	ENSMMNG00015005553	NFIX (ENSMMNG00015005457) ##22	LYL1 (ENSMMNG00015005401)	TRMT1 (ENSMMNG00015005352)	NACC1 (ENSMMNG00015005326)	STX10 (ENSMMNG00015005279)	IER2 (ENSMMNG00015005251)	CACNA1A (ENSMMNG00015004782)	YJU2B (ENSMMNG00015004541)	MRI1 (ENSMMNG00015004525)	C19orf53 (ENSMMNG00015004514)	ZSWIM4 (ENSMMNG00015004504)	NANOS3 (ENSMMNG00015004460)	ENSMMNG00015004453	CC2D1A (ENSMMNG00015004418)	PODNL1 (ENSMMNG00015004384)	DCAF15 (ENSMMNG00015004359)
Vaquita	MODERN SPECIES	14	BEST2 (ENSPSNG00000007304)	HOOK2 (ENSPSNG00000007235)	JUNB (ENSPSNG00000007194)	PRDX2 (ENSPSNG00000007156)	RNASEH2A (ENSPSNG00000007087)	RTBDN (ENSPSNG00000007000)	MAST1 (ENSPSNG00000006815)	DNASE2 (ENSPSNG00000006758)	KLF1 (ENSPSNG00000006733)	GCDH (ENSPSNG00000006697)	FARSA (ENSPSNG00000006551)	CALR (ENSPSNG00000006361)	RAD23A (ENSPSNG00000006274)	GADD45GIP1 (ENSPSNG00000006226)	ENSPSNG00000006174	NFIX (ENSPSNG00000005985) ##22	LYL1 (ENSPSNG00000005801)	TRMT1 (ENSPSNG00000005699)	NACC1 (ENSPSNG00000005645)	STX10 (ENSPSNG00000005596)	IER2 (ENSPSNG00000005553)	CACNA1A (ENSPSNG00000003893)	YJU2B (ENSPSNG00000003221)	C19orf53 (ENSPSNG00000003199)	MRI1 (ENSPSNG00000003184)	ZSWIM4 (ENSPSNG00000003154)	NANOS3 (ENSPSNG00000003112)	ENSPSNG00000003101	CC2D1A (ENSPSNG00000002978)	PODNL1 (ENSPSNG00000002942)	DCAF15 (ENSPSNG00000002892)
Dolphin	MODERN SPECIES	2169															DAND5 (ENSTTRG00000006359)	NFIX (ENSTTRG00000006368) ##22	LYL1 (ENSTTRG00000006376)	TRMT1 (ENSTTRG00000006379)	NACC1 (ENSTTRG00000006384)	STX10 (ENSTTRG00000006387)	IER2 (ENSTTRG00000006388)
Sperm whale	MODERN SPECIES	11	ENSPCTG00005013155	ENSPCTG00005013185	ENSPCTG00005013280	OR7G3 (ENSPCTG00005013334)	ZNF317 (ENSPCTG00005013391)	ENSPCTG00005013462	ENSPCTG00005013486	OR1M1 (ENSPCTG00005013520)	ENSPCTG00005013549	ENSPCTG00005013683 ##13	ENSPCTG00005014021	ENSPCTG00005014073 ##13	ENSPCTG00005014150 ##13	ENSPCTG00005014212	MAN2B1 (ENSPCTG00005014341)	NFIX (ENSPCTG00005015199) ##22	LYL1 (ENSPCTG00005015333)	TRMT1 (ENSPCTG00005015397)	NACC1 (ENSPCTG00005015809)	STX10 (ENSPCTG00005015864)	IER2 (ENSPCTG00005016181)	CACNA1A (ENSPCTG00005016871)	IL27RA (ENSPCTG00005022303)	PALM3 (ENSPCTG00005022310)	MISP3 (ENSPCTG00005004751)	NANOS3 (ENSPCTG00005004775)	ENSPCTG00005004792	DNAJB1 (ENSPCTG00005004866)	ADGRL1 (ENSPCTG00005004909)	ENSPCTG00005004947	ADGRE3 (ENSPCTG00005005032)
Suina	ANCESTRAL SPECIES	16	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Chacoan peccary	MODERN SPECIES	769		JUNB (ENSCWAG00000000438)	ENSCWAG00000000453	THSD8 (ENSCWAG00000000470)	RNASEH2A (ENSCWAG00000000486)	RTBDN (ENSCWAG00000000515)	MAST1 (ENSCWAG00000000559)	DNASE2 (ENSCWAG00000000717)	KLF1 (ENSCWAG00000000736)	GCDH (ENSCWAG00000000760)	SYCE2 (ENSCWAG00000000797)	FARSA (ENSCWAG00000000829)	CALR (ENSCWAG00000000858)	RAD23A (ENSCWAG00000000887)	GADD45GIP1 (ENSCWAG00000000909)	NFIX (ENSCWAG00000000950) ##22	LYL1 (ENSCWAG00000001006)	TRMT1 (ENSCWAG00000001026)	NACC1 (ENSCWAG00000001107)	STX10 (ENSCWAG00000001131)	IER2 (ENSCWAG00000001159)	CACNA1A (ENSCWAG00000001583)	YJU2B (ENSCWAG00000005691)	MRI1 (ENSCWAG00000005715)	C19orf53 (ENSCWAG00000005735)	ZSWIM4 (ENSCWAG00000005771)	NANOS3 (ENSCWAG00000005863)	ENSCWAG00000005882	CC2D1A (ENSCWAG00000005927)	PODNL1 (ENSCWAG00000005980)	DCAF15 (ENSCWAG00000006021)
Pig	MODERN SPECIES	10	HOOK2 (ENSSSCG00000013734)	JUNB (ENSSSCG00000013735)	PRDX2 (ENSSSCG00000013736)	RNASEH2A (ENSSSCG00000013737)	RTBDN (ENSSSCG00000033304)	MAST1 (ENSSSCG00000013732)	DNASE2 (ENSSSCG00000013731)	KLF1 (ENSSSCG00000013730)	GCDH (ENSSSCG00000013729)	SYCE2 (ENSSSCG00000013740)	FARSA (ENSSSCG00000013745)	CALR (ENSSSCG00000013746)	GADD45GIP1 (ENSSSCG00000034859)	RAD23A (ENSSSCG00000013747)	ENSSSCG00000048273	NFIX (ENSSSCG00000013742) ##22	LYL1 (ENSSSCG00000024549)	TRMT1 (ENSSSCG00000013744)	NACC1 (ENSSSCG00000013751)	STX10 (ENSSSCG00000013752)	IER2 (ENSSSCG00000013753)	CACNA1A (ENSSSCG00000013754)	YJU2B (ENSSSCG00000013755)	MRI1 (ENSSSCG00000013756)	C19orf53 (ENSSSCG00000013757)	ZSWIM4 (ENSSSCG00000013758)	NANOS3 (ENSSSCG00000013759)	ENSSSCG00000013760	CC2D1A (ENSSSCG00000013761)	PODNL1 (ENSSSCG00000013762)	DCAF15 (ENSSSCG00000013763)
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Carnivora	ANCESTRAL SPECIES	6	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Canidae	ANCESTRAL SPECIES		ENSGT00940000161195	ENSGT00940000155828	ENSGT00960000189551	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404.b	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404.b	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Dingo	MODERN SPECIES	112	HOOK2 (ENSCAFG00020005171)	JUNB (ENSCAFG00020005176)	PRDX2 (ENSCAFG00020005178)	RNASEH2A (ENSCAFG00020005190)	RTBDN (ENSCAFG00020005198)	MAST1 (ENSCAFG00020005207)	DNASE2 (ENSCAFG00020005295)	KLF1 (ENSCAFG00020005300)	GCDH (ENSCAFG00020005305)	ENSCAFG00020005308	FARSA (ENSCAFG00020005315)	CALR (ENSCAFG00020005320)	RAD23A (ENSCAFG00020005332)	GADD45GIP1 (ENSCAFG00020005337)	DAND5 (ENSCAFG00020005339)	NFIX (ENSCAFG00020005352) ##22	LYL1 (ENSCAFG00020005371)	TRMT1 (ENSCAFG00020005397)	NACC1 (ENSCAFG00020005901)	ENSCAFG00020005909	ENSCAFG00020005912	IER2 (ENSCAFG00020005915)	CACNA1A (ENSCAFG00020005960)	YJU2B (ENSCAFG00020006657)	MRI1 (ENSCAFG00020006659)	C19orf53 (ENSCAFG00020006664)	ZSWIM4 (ENSCAFG00020006666)	NANOS3 (ENSCAFG00020006694)	ENSCAFG00020006696	CC2D1A (ENSCAFG00020006705)	PODNL1 (ENSCAFG00020006719)
Dog	MODERN SPECIES	12	HOOK2 (ENSCAFG00845016033)	JUNB (ENSCAFG00845015989)	PRDX2 (ENSCAFG00845015946)	RNASEH2A (ENSCAFG00845015846)	RTBDN (ENSCAFG00845015774)	MAST1 (ENSCAFG00845015670)	DNASE2 (ENSCAFG00845015604)	KLF1 (ENSCAFG00845015569)	GCDH (ENSCAFG00845015478)	SYCE2 (ENSCAFG00845015391)	FARSA (ENSCAFG00845015291)	CALR (ENSCAFG00845015220)	RAD23A (ENSCAFG00845015161)	GADD45GIP1 (ENSCAFG00845015125)	DAND5 (ENSCAFG00845015107)	NFIX (ENSCAFG00845030565) ##22	ENSCAFG00845030516	TRMT1 (ENSCAFG00845030492)	NACC1 (ENSCAFG00845030474)	STX10 (ENSCAFG00845030435)	IER2 (ENSCAFG00845030405)	CACNA1A (ENSCAFG00845028149)	CCDC130 (ENSCAFG00845027226)	MRI1 (ENSCAFG00845027181)	C20H19orf53 (ENSCAFG00845027143)	ZSWIM4 (ENSCAFG00845026936)	NANOS3 (ENSCAFG00845026758)	ENSCAFG00845026724	CC2D1A (ENSCAFG00845026441)	PODNL1 (ENSCAFG00845026152)	DCAF15 (ENSCAFG00845026029)
Red fox	MODERN SPECIES	182	HOOK2 (ENSVVUG00000024128)	JUNB (ENSVVUG00000024130)	PRDX2 (ENSVVUG00000024132)	ENSVVUG00000024133	RTBDN (ENSVVUG00000024134)	MAST1 (ENSVVUG00000024135)	DNASE2 (ENSVVUG00000024141)	KLF1 (ENSVVUG00000024142)	GCDH (ENSVVUG00000024143)	ENSVVUG00000024144	FARSA (ENSVVUG00000024145)	CALR (ENSVVUG00000024147)	RAD23A (ENSVVUG00000024155)	GADD45GIP1 (ENSVVUG00000024166)	DAND5 (ENSVVUG00000024168)	NFIX (ENSVVUG00000024169) ##22	ENSVVUG00000024173	LYL1 (ENSVVUG00000024174)	TRMT1 (ENSVVUG00000024177)	NACC1 (ENSVVUG00000024182)	ENSVVUG00000024185	IER2 (ENSVVUG00000024187)	CACNA1A (ENSVVUG00000024251)	ENSVVUG00000026589	CCDC130 (ENSVVUG00000026733)	MRI1 (ENSVVUG00000026734)	CUNH19orf53 (ENSVVUG00000026738)	ZSWIM4 (ENSVVUG00000026745)	NANOS3 (ENSVVUG00000026757)	CUNH19orf57 (ENSVVUG00000026758)	CC2D1A (ENSVVUG00000026759)
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00940000161195.d	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Ursidae	ANCESTRAL SPECIES	20	ENSGT00940000161195.d	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00940000164104	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Ursus	ANCESTRAL SPECIES	91	ENSGT00940000161361	ENSGT00940000160152	ENSGT00940000161195.c	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00940000164104	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Polar bear	MODERN SPECIES	464	GET3 (ENSUMAG00000006429)	ENSUMAG00000006424	HOOK2 (ENSUMAG00000006279)	PRDX2 (ENSUMAG00000006260)	ENSUMAG00000006254	RTBDN (ENSUMAG00000006251)	MAST1 (ENSUMAG00000006156)	DNASE2 (ENSUMAG00000006143)	GCDH (ENSUMAG00000006134)	SYCE2 (ENSUMAG00000006118)	FARSA (ENSUMAG00000006110)	CALR (ENSUMAG00000006097)	RAD23A (ENSUMAG00000006070)	ENSUMAG00000006067	DAND5 (ENSUMAG00000006065)	NFIX (ENSUMAG00000006053) ##22	LYL1 (ENSUMAG00000006035)	TRMT1 (ENSUMAG00000006027)	ENSUMAG00000006026	ENSUMAG00000006021	ENSUMAG00000006017	CACNA1A (ENSUMAG00000004898)	YJU2B (ENSUMAG00000004756)	MRI1 (ENSUMAG00000004743)	ENSUMAG00000004739	ZSWIM4 (ENSUMAG00000004723)	NANOS3 (ENSUMAG00000004703)	ENSUMAG00000004697	CC2D1A (ENSUMAG00000004689)	DCAF15 (ENSUMAG00000004671)	RFX1 (ENSUMAG00000004593)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	7401																ENSUAMG00000000751 ##22
American black bear	MODERN SPECIES	4164																ENSUAMG00000022909 ##22	LYL1 (ENSUAMG00000022910)	TRMT1 (ENSUAMG00000022911)	NACC1 (ENSUAMG00000022958)
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	2195																ENSAMEG00000028564 ##22
Giant Panda	MODERN SPECIES	14	HOOK2 (ENSAMEG00000012234)	JUNB (ENSAMEG00000012298)	PRDX2 (ENSAMEG00000012307)	RNASEH2A (ENSAMEG00000028673)	RTBDN (ENSAMEG00000012347)	MAST1 (ENSAMEG00000012351)	DNASE2 (ENSAMEG00000012396)	KLF1 (ENSAMEG00000027076)	GCDH (ENSAMEG00000012411)	SYCE2 (ENSAMEG00000012442)	FARSA (ENSAMEG00000012446)	ENSAMEG00000012487	RAD23A (ENSAMEG00000012527)	GADD45GIP1 (ENSAMEG00000012565)	DAND5 (ENSAMEG00000012568)	ENSAMEG00000012569 ##22	ENSAMEG00000027765	LYL1 (ENSAMEG00000026522)	TRMT1 (ENSAMEG00000012598)	NACC1 (ENSAMEG00000012634)	STX10 (ENSAMEG00000012641)	IER2 (ENSAMEG00000020275)	CACNA1A (ENSAMEG00000012670)	YJU2B (ENSAMEG00000012903)	C19orf53 (ENSAMEG00000012918)	ZSWIM4 (ENSAMEG00000012935)	NANOS3 (ENSAMEG00000012972)	ENSAMEG00000029005	ENSAMEG00000012974	CC2D1A (ENSAMEG00000012975)	PODNL1 (ENSAMEG00000013040)
Mustelinae	ANCESTRAL SPECIES	45	ENSGT00940000160152	ENSGT00940000161195.d	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Ferret	MODERN SPECIES	185	GET3 (ENSMPUG00000004639)	HOOK2 (ENSMPUG00000004624)	JUNB (ENSMPUG00000018708)	PRDX2 (ENSMPUG00000004591)	RNASEH2A (ENSMPUG00000004586)	RTBDN (ENSMPUG00000004582)	MAST1 (ENSMPUG00000004565)	DNASE2 (ENSMPUG00000004550)	KLF1 (ENSMPUG00000004544)	ENSMPUG00000004535	GCDH (ENSMPUG00000004518)	FARSA (ENSMPUG00000004400)	CALR (ENSMPUG00000004348)	RAD23A (ENSMPUG00000004334)	GADD45GIP1 (ENSMPUG00000004344)	NFIX (ENSMPUG00000004325) ##22	LYL1 (ENSMPUG00000004316)	TRMT1 (ENSMPUG00000004210)	NACC1 (ENSMPUG00000004203)	STX10 (ENSMPUG00000004133)	IER2 (ENSMPUG00000018705)	CACNA1A (ENSMPUG00000003358)	YJU2B (ENSMPUG00000003348)	MRI1 (ENSMPUG00000003316)	C19orf53 (ENSMPUG00000003300)	ZSWIM4 (ENSMPUG00000003286)	NANOS3 (ENSMPUG00000003282)	ENSMPUG00000003271	CC2D1A (ENSMPUG00000003255)	PODNL1 (ENSMPUG00000003251)	RFX1 (ENSMPUG00000003132)
American mink	MODERN SPECIES	233	HOOK2 (ENSNVIG00000003702)	JUNB (ENSNVIG00000003745)	PRDX2 (ENSNVIG00000003765)	RNASEH2A (ENSNVIG00000003791)	RTBDN (ENSNVIG00000003814)	MAST1 (ENSNVIG00000003827)	DNASE2 (ENSNVIG00000003902)	KLF1 (ENSNVIG00000003918)	GCDH (ENSNVIG00000003925)	SYCE2 (ENSNVIG00000003941)	FARSA (ENSNVIG00000003979)	CALR (ENSNVIG00000004013)	RAD23A (ENSNVIG00000004028)	ENSNVIG00000004059	DAND5 (ENSNVIG00000004073)	NFIX (ENSNVIG00000004082) ##22	LYL1 (ENSNVIG00000004114)	TRMT1 (ENSNVIG00000004121)	NACC1 (ENSNVIG00000004197)	STX10 (ENSNVIG00000004211)	IER2 (ENSNVIG00000004234)	CACNA1A (ENSNVIG00000004318)	YJU2B (ENSNVIG00000006150)	MRI1 (ENSNVIG00000006189)	C19orf53 (ENSNVIG00000006202)	ZSWIM4 (ENSNVIG00000006210)	NANOS3 (ENSNVIG00000006232)	ENSNVIG00000006245	ENSNVIG00000006254	CC2D1A (ENSNVIG00000006255)	PODNL1 (ENSNVIG00000006307)
Felidae	ANCESTRAL SPECIES	21	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102.b	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Cat	MODERN SPECIES	1	HOOK2 (ENSFCAG00000028846)	JUNB (ENSFCAG00000022803)	PRDX2 (ENSFCAG00000000473)	THSD8 (ENSFCAG00000052414)	RNASEH2A (ENSFCAG00000000474)	RTBDN (ENSFCAG00000009941)	MAST1 (ENSFCAG00000000475)	DNASE2 (ENSFCAG00000000476)	KLF1 (ENSFCAG00000026066)	GCDH (ENSFCAG00000000477)	FARSA (ENSFCAG00000023511)	CALR (ENSFCAG00000000479)	RAD23A (ENSFCAG00000023315)	GADD45GIP1 (ENSFCAG00000034587)	DAND5 (ENSFCAG00000043469)	NFIX (ENSFCAG00000000481) ##22	ENSFCAG00000000482	TRMT1 (ENSFCAG00000000483)	NACC1 (ENSFCAG00000025613)	STX10 (ENSFCAG00000000484)	IER2 (ENSFCAG00000000485)	CACNA1A (ENSFCAG00000000486)	MRI1 (ENSFCAG00000011508)	ENSFCAG00000044597	ZSWIM4 (ENSFCAG00000003715)	NANOS3 (ENSFCAG00000003717)	BRME1 (ENSFCAG00000003718)	CC2D1A (ENSFCAG00000003719)	PODNL1 (ENSFCAG00000003720)	DCAF15 (ENSFCAG00000014364)	RFX1 (ENSFCAG00000003721)
Panthera	ANCESTRAL SPECIES	15	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102.b	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Tiger	MODERN SPECIES	580	HOOK2 (ENSPTIG00000013806)	PRDX2 (ENSPTIG00000013677)	THSD8 (ENSPTIG00000013637)	RNASEH2A (ENSPTIG00000013366)	RTBDN (ENSPTIG00000013220)	ENSPTIG00000012815	DNASE2 (ENSPTIG00000012774)	ENSPTIG00000012710	GCDH (ENSPTIG00000012466)	SYCE2 (ENSPTIG00000011935)	FARSA (ENSPTIG00000011502)	CALR (ENSPTIG00000011152)	RAD23A (ENSPTIG00000010565)	ENSPTIG00000010514	DAND5 (ENSPTIG00000010336)	NFIX (ENSPTIG00000009075) ##22	TRMT1 (ENSPTIG00000008833)	STX10 (ENSPTIG00000008273)	ENSPTIG00000008052	YJU2B (ENSPTIG00000005555)	MRI1 (ENSPTIG00000005216)	C19orf53 (ENSPTIG00000004139)	ZSWIM4 (ENSPTIG00000001122)	NANOS3 (ENSPTIG00000000325)	ENSPTIG00000000031	CC2D1A (ENSPTIG00000021588)	RLN3 (ENSPTIG00000021464)	ENSPTIG00000021368	C19orf67 (ENSPTIG00000021323)	PRKACA (ENSPTIG00000021292)	ASF1B (ENSPTIG00000021042)
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102.b	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
leopard	MODERN SPECIES	110	JUNB (ENSPPRG00000020564)	PRDX2 (ENSPPRG00000010246)	RNASEH2A (ENSPPRG00000010585)	THSD8 (ENSPPRG00000011424)	RTBDN (ENSPPRG00000013084)	MAST1 (ENSPPRG00000014214)	DNASE2 (ENSPPRG00000015132)	KLF1 (ENSPPRG00000016685)	GCDH (ENSPPRG00000020586)	SYCE2 (ENSPPRG00000021729)	FARSA (ENSPPRG00000000346)	CALR (ENSPPRG00000000511)	RAD23A (ENSPPRG00000002419)	GADD45GIP1 (ENSPPRG00000002575)	DAND5 (ENSPPRG00000002664)	NFIX (ENSPPRG00000007036) ##22	LYL1 (ENSPPRG00000008858)	TRMT1 (ENSPPRG00000012117)	NACC1 (ENSPPRG00000012438)	STX10 (ENSPPRG00000014043)	IER2 (ENSPPRG00000021487)	CACNA1A (ENSPPRG00000002365)	YJU2B (ENSPPRG00000005736)	MRI1 (ENSPPRG00000006539)	C19orf53 (ENSPPRG00000006905)	ZSWIM4 (ENSPPRG00000009270)	NANOS3 (ENSPPRG00000009573)	ENSPPRG00000009886	CC2D1A (ENSPPRG00000010376)	PODNL1 (ENSPPRG00000010654)	DCAF15 (ENSPPRG00000011956)
lion	MODERN SPECIES	2	JUNB (ENSPLOG00000014495)	PRDX2 (ENSPLOG00000014517)	THSD8 (ENSPLOG00000014622)	RNASEH2A (ENSPLOG00000014659)	RTBDN (ENSPLOG00000014688)	MAST1 (ENSPLOG00000014769)	DNASE2 (ENSPLOG00000015142)	KLF1 (ENSPLOG00000015199)	GCDH (ENSPLOG00000015264)	SYCE2 (ENSPLOG00000015466)	FARSA (ENSPLOG00000015558)	CALR (ENSPLOG00000015775)	RAD23A (ENSPLOG00000015869)	GADD45GIP1 (ENSPLOG00000015943)	DAND5 (ENSPLOG00000015976)	NFIX (ENSPLOG00000016031) ##22	LYL1 (ENSPLOG00000016418)	TRMT1 (ENSPLOG00000016470)	NACC1 (ENSPLOG00000016708)	STX10 (ENSPLOG00000016759)	IER2 (ENSPLOG00000016822)	CACNA1A (ENSPLOG00000017530)	YJU2B (ENSPLOG00000021795)	MRI1 (ENSPLOG00000021817)	C19orf53 (ENSPLOG00000021831)	ZSWIM4 (ENSPLOG00000021842)	NANOS3 (ENSPLOG00000021885)	ENSPLOG00000021891	CC2D1A (ENSPLOG00000022083)	PODNL1 (ENSPLOG00000022445)	DCAF15 (ENSPLOG00000022465)
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Equus	ANCESTRAL SPECIES	55	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Donkey	MODERN SPECIES	12	PRDX2 (ENSEASG00005004125)	JUNB (ENSEASG00005032517)	RNASEH2A (ENSEASG00005004118)	RTBDN (ENSEASG00005004115)	MAST1 (ENSEASG00005004109)	DNASE2 (ENSEASG00005004105)	KLF1 (ENSEASG00005004104)	GCDH (ENSEASG00005004102)	ENSEASG00005034575	FARSA (ENSEASG00005004093)	CALR (ENSEASG00005004089)	RAD23A (ENSEASG00005004081)	GADD45GIP1 (ENSEASG00005035955)	DAND5 (ENSEASG00005004075)	ENSEASG00005028746	NFIX (ENSEASG00005004061) ##22	LYL1 (ENSEASG00005024646)	TRMT1 (ENSEASG00005004050)	NACC1 (ENSEASG00005004040)	ENSEASG00005004032	IER2 (ENSEASG00005034811)	CACNA1A (ENSEASG00005000422)	YJU2B (ENSEASG00005000166)	MRI1 (ENSEASG00005000151)	C19orf53 (ENSEASG00005025989)	ZSWIM4 (ENSEASG00005015317)	NANOS3 (ENSEASG00005015313)	ENSEASG00005032947	CC2D1A (ENSEASG00005015309)	PODNL1 (ENSEASG00005015307)	DCAF15 (ENSEASG00005015306)
Horse	MODERN SPECIES	28	PRDX2 (ENSECAG00000011541)	JUNB (ENSECAG00000003816)	RNASEH2A (ENSECAG00000007013)	RTBDN (ENSECAG00000001223)	MAST1 (ENSECAG00000022473)	DNASE2 (ENSECAG00000018970)	KLF1 (ENSECAG00000027715)	GCDH (ENSECAG00000012495)	SYCE2 (ENSECAG00000052051)	FARSA (ENSECAG00000015139)	CALR (ENSECAG00000008164)	RAD23A (ENSECAG00000024607)	DAND5 (ENSECAG00000024508)	GADD45GIP1 (ENSECAG00000003766)	ENSECAG00000031092	NFIX (ENSECAG00000019690) ##22	LYL1 (ENSECAG00000028699)	TRMT1 (ENSECAG00000016149)	NACC1 (ENSECAG00000015051)	STX10 (ENSECAG00000013775)	IER2 (ENSECAG00000041395)	CACNA1A (ENSECAG00000016371)	YJU2B (ENSECAG00000012731)	C7H19orf53 (ENSECAG00000010593)	ZSWIM4 (ENSECAG00000006600)	NANOS3 (ENSECAG00000016293)	BRME1 (ENSECAG00000029150)	CC2D1A (ENSECAG00000014906)	PODNL1 (ENSECAG00000016452)	DCAF15 (ENSECAG00000016571)	RFX1 (ENSECAG00000016589)
Chiroptera	ANCESTRAL SPECIES	60	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Megabat	MODERN SPECIES	2568															DAND5 (ENSPVAG00000015073)	NFIX (ENSPVAG00000015074) ##22	LYL1 (ENSPVAG00000015075)	TRMT1 (ENSPVAG00000015076)	NACC1 (ENSPVAG00000015077)	STX10 (ENSPVAG00000015078)	IER2 (ENSPVAG00000015079)	CACNA1A (ENSPVAG00000015081)
Microchiroptera	ANCESTRAL SPECIES	51	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Greater horseshoe bat	MODERN SPECIES	9	THSD8 (ENSRFEG00010021389)	RNASEH2A (ENSRFEG00010021379)	ENSRFEG00010021370	RTBDN (ENSRFEG00010021362)	MAST1 (ENSRFEG00010021327)	DNASE2 (ENSRFEG00010021305)	KLF1 (ENSRFEG00010021300)	GCDH (ENSRFEG00010021270)	SYCE2 (ENSRFEG00010021245)	FARSA (ENSRFEG00010021230)	CALR (ENSRFEG00010021212)	RAD23A (ENSRFEG00010021198)	GADD45GIP1 (ENSRFEG00010021188)	DAND5 (ENSRFEG00010021178)	ENSRFEG00010021172	NFIX (ENSRFEG00010021037) ##22	LYL1 (ENSRFEG00010020997)	TRMT1 (ENSRFEG00010020964)	NACC1 (ENSRFEG00010020944)	STX10 (ENSRFEG00010020918)	IER2 (ENSRFEG00010020910)	CACNA1A (ENSRFEG00010012402)	YJU2B (ENSRFEG00010011786)	MRI1 (ENSRFEG00010011758)	C19orf53 (ENSRFEG00010011715)	ZSWIM4 (ENSRFEG00010011662)	NANOS3 (ENSRFEG00010011622)	ENSRFEG00010011572	CC2D1A (ENSRFEG00010010723)	PODNL1 (ENSRFEG00010010558)	DCAF15 (ENSRFEG00010010497)
Microbat	MODERN SPECIES	1559	BEST2 (ENSMLUG00000029360)	HOOK2 (ENSMLUG00000012699)	JUNB (ENSMLUG00000012714)	PRDX2 (ENSMLUG00000012718)	RNASEH2A (ENSMLUG00000012723)	RTBDN (ENSMLUG00000012729)	MAST1 (ENSMLUG00000012736)	DNASE2 (ENSMLUG00000023519)	KLF1 (ENSMLUG00000012751)	GCDH (ENSMLUG00000012753)	SYCE2 (ENSMLUG00000004284)	FARSA (ENSMLUG00000012767)	ENSMLUG00000012776	RAD23A (ENSMLUG00000012783)	GADD45GIP1 (ENSMLUG00000012790)	NFIX (ENSMLUG00000012794) ##22	LYL1 (ENSMLUG00000012805)	TRMT1 (ENSMLUG00000012809)	NACC1 (ENSMLUG00000003937)
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Euarchontoglires_A	ANCESTRAL SPECIES	20	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Tree shrew	MODERN SPECIES	5832																ENSTBEG00000014687 ##22
Glires	ANCESTRAL SPECIES	21	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Rodentia_B	ANCESTRAL SPECIES	43	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Kangaroo rat	MODERN SPECIES	502	Trir (ENSDORG00000014997)	Get3 (ENSDORG00000014999)	Best2 (ENSDORG00000015000)	Hook2 (ENSDORG00000015001)	Prdx2 (ENSDORG00000009005)	Rnaseh2a (ENSDORG00000009008)	ENSDORG00000009013	Dnase2a (ENSDORG00000009016)	Klf1 (ENSDORG00000009018)	Gcdh (ENSDORG00000009020)	Syce2 (ENSDORG00000009022)	Farsa (ENSDORG00000010118)	Calr (ENSDORG00000010117)	Rad23a (ENSDORG00000010116)	Dand5 (ENSDORG00000007059)	Nfix (ENSDORG00000012235) ##22	Lyl1 (ENSDORG00000029482)	Trmt1 (ENSDORG00000014298)	Nacc1 (ENSDORG00000003988)	Cacna1a (ENSDORG00000010862)	Ccdc130 (ENSDORG00000010877)	Mri1 (ENSDORG00000010875)	D8Ertd738e (ENSDORG00000023743)	Zswim4 (ENSDORG00000016139)	Cc2d1a (ENSDORG00000016499)	Rfx1 (ENSDORG00000016506)	Rln3 (ENSDORG00000013264)	Il27ra (ENSDORG00000013261)	1700067K01Rik (ENSDORG00000027830)	Prkaca (ENSDORG00000014936)	Asf1b (ENSDORG00000029005)
Myomorpha	ANCESTRAL SPECIES	52	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Muroidea	ANCESTRAL SPECIES	60	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Muroidea_A	ANCESTRAL SPECIES	16	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Cricetinae	ANCESTRAL SPECIES	40	ENSGT00940000161361	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b
Chinese hamster chok1gshd	MODERN SPECIES	347	Best2 (ENSCGRG00001016555)	Hook2 (ENSCGRG00001021145)	Junb (ENSCGRG00001015135)	PRDX2 (ENSCGRG00001001765)	Rnaseh2a (ENSCGRG00001005021)	Mast1 (ENSCGRG00001012818)	Dnase2a (ENSCGRG00001011489)	Klf1 (ENSCGRG00001011893)	Gcdh (ENSCGRG00001012582)	Syce2 (ENSCGRG00001013520)	Farsa (ENSCGRG00001019769)	Calr (ENSCGRG00001020181)	Rad23a (ENSCGRG00001020853)	Gadd45gip1 (ENSCGRG00001000298)	Dand5 (ENSCGRG00001000588)	Nfix (ENSCGRG00001013186) ##22	Lyl1 (ENSCGRG00001020161)	Trmt1 (ENSCGRG00001022594)	Nacc1 (ENSCGRG00001016498)	Ier2 (ENSCGRG00001015864)	Cacna1a (ENSCGRG00001015728)	Ccdc130 (ENSCGRG00001021573)	MRI1 (ENSCGRG00001015655)	D8Ertd738e (ENSCGRG00001019898)	Zswim4 (ENSCGRG00001022171)	Nanos3 (ENSCGRG00001023851)	Brme1 (ENSCGRG00001007024)	Cc2d1a (ENSCGRG00001014304)	Podnl1 (ENSCGRG00001020503)	Dcaf15 (ENSCGRG00001023898)	Rfx1 (ENSCGRG00001011068)
Golden Hamster	MODERN SPECIES	877	Best2 (ENSMAUG00000010704)	Hook2 (ENSMAUG00000013561)	Junb (ENSMAUG00000004233)	Prdx2 (ENSMAUG00000005262)	ENSMAUG00000021740	Mast1 (ENSMAUG00000001337)	Dnase2a (ENSMAUG00000012610)	Klf1 (ENSMAUG00000021937)	Gcdh (ENSMAUG00000012276)	Syce2 (ENSMAUG00000015586)	ENSMAUG00000000609	Farsa (ENSMAUG00000009188)	Rad23a (ENSMAUG00000009327)	Gadd45gip1 (ENSMAUG00000001145)	Dand5 (ENSMAUG00000020203)	Nfix (ENSMAUG00000018106) ##22	Trmt1 (ENSMAUG00000011134)	Nacc1 (ENSMAUG00000004663)	Cacna1a (ENSMAUG00000008037)
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Prairie vole	MODERN SPECIES	173															ENSMOCG00000000206	Nfix (ENSMOCG00000002641) ##22	Lyl1 (ENSMOCG00000000199)	Trmt1 (ENSMOCG00000015895)	ENSMOCG00000018653	Ier2 (ENSMOCG00000001243)	Cacna1a (ENSMOCG00000014432)	ENSMOCG00000010484	ENSMOCG00000009861	Mri1 (ENSMOCG00000009591)	D8Ertd738e (ENSMOCG00000000560)	Zswim4 (ENSMOCG00000013310)	Nanos3 (ENSMOCG00000000059)	Brme1 (ENSMOCG00000019462)	Cc2d1a (ENSMOCG00000009561)	Podnl1 (ENSMOCG00000019920)	ENSMOCG00000019700
Northern American deer mouse	MODERN SPECIES	18	Junb (ENSPEMG00000006961)	Prdx2 (ENSPEMG00000000538)	Gm49661 (ENSPEMG00000029668)	Rnaseh2a (ENSPEMG00000018009)	Rtbdn (ENSPEMG00000024999)	Mast1 (ENSPEMG00000010588)	Dnase2a (ENSPEMG00000000677)	Klf1 (ENSPEMG00000017635)	Gcdh (ENSPEMG00000009103)	Syce2 (ENSPEMG00000016357)	Farsa (ENSPEMG00000012560)	Calr (ENSPEMG00000001949)	Rad23a (ENSPEMG00000006140)	Gadd45gip1 (ENSPEMG00000011904)	Dand5 (ENSPEMG00000017061)	Nfix (ENSPEMG00000011765) ##22	ENSPEMG00000029305	Lyl1 (ENSPEMG00000026641)	Trmt1 (ENSPEMG00000016247)	Nacc1 (ENSPEMG00000003314)	ENSPEMG00000028317	Ier2 (ENSPEMG00000005842)	ENSPEMG00000030103	ENSPEMG00000031086	Ccdc130 (ENSPEMG00000013906)	Mri1 (ENSPEMG00000006105)	D8Ertd738e (ENSPEMG00000027807)	Zswim4 (ENSPEMG00000009048)	Nanos3 (ENSPEMG00000030151)	Brme1 (ENSPEMG00000000718)	Podnl1 (ENSPEMG00000018883)
Murinae	ANCESTRAL SPECIES	15	ENSGT00940000155828.g.a	ENSGT00870000137755	ENSGT00940000155828.h	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856.d	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Mus	ANCESTRAL SPECIES	6	ENSGT00940000155828.g.a	ENSGT00870000137755	ENSGT00940000155828.h	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856.d	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000161195	ENSGT00940000155828.g.a	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856.d	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000161195	ENSGT00940000155828.g.a	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856.d	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Mouse	MODERN SPECIES	17	Prdx2 (ENSMUSG00000005161)	Gm49661 (ENSMUSG00000111184)	Rnaseh2a (ENSMUSG00000052926)	Rtbdn (ENSMUSG00000048617)	Mast1 (ENSMUSG00000053693)	Dnase2a (ENSMUSG00000003812)	Klf1 (ENSMUSG00000054191)	Gcdh (ENSMUSG00000003809)	Syce2 (ENSMUSG00000003824)	Farsa (ENSMUSG00000003808)	Calr (ENSMUSG00000003814)	Rad23a (ENSMUSG00000003813)	Gadd45gip1 (ENSMUSG00000033751)	Dand5 (ENSMUSG00000053226)	Lyl1 (ENSMUSG00000034041)	Nfix (ENSMUSG00000001911) ##22	Trmt1 (ENSMUSG00000001909)	Nacc1 (ENSMUSG00000001910)	Ier2 (ENSMUSG00000053560)	Cacna1a (ENSMUSG00000034656)	Ccdc130 (ENSMUSG00000004994)	Mri1 (ENSMUSG00000004996)	D8Ertd738e (ENSMUSG00000019362)	Zswim4 (ENSMUSG00000035671)	Nanos3 (ENSMUSG00000056155)	Brme1 (ENSMUSG00000008129)	Cc2d1a (ENSMUSG00000036686)	Podnl1 (ENSMUSG00000012889)	Dcaf15 (ENSMUSG00000037103)	Rfx1 (ENSMUSG00000031706)	Gm10643 (ENSMUSG00000074215)
Mus_C	ANCESTRAL SPECIES	5	ENSGT00870000137755	ENSGT00940000155828.h	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856.d	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00940000157455.z	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
spretus	MODERN SPECIES	17	Rnaseh2a (MGP_SPRETEiJ_G0032438)	Rtbdn (MGP_SPRETEiJ_G0032437)	Mast1 (MGP_SPRETEiJ_G0032436)	Dnase2a (MGP_SPRETEiJ_G0032435)	Klf1 (MGP_SPRETEiJ_G0032434)	Gcdh (MGP_SPRETEiJ_G0032433)	Syce2 (MGP_SPRETEiJ_G0032432)	Farsa (MGP_SPRETEiJ_G0032431)	MGP_SPRETEiJ_G0032430	Calr (MGP_SPRETEiJ_G0032429)	Rad23a (MGP_SPRETEiJ_G0032428)	Gadd45gip1 (MGP_SPRETEiJ_G0032427)	Dand5 (MGP_SPRETEiJ_G0032426)	MGP_SPRETEiJ_G0032425	Lyl1 (MGP_SPRETEiJ_G0032424)	Nfix (MGP_SPRETEiJ_G0032423) ##22	Trmt1 (MGP_SPRETEiJ_G0032422)	MGP_SPRETEiJ_G0032421	Ier2 (MGP_SPRETEiJ_G0032420)	Cacna1a (MGP_SPRETEiJ_G0032419)	Ccdc130 (MGP_SPRETEiJ_G0032418)	Mri1 (MGP_SPRETEiJ_G0032417)	D8Ertd738e (MGP_SPRETEiJ_G0032416)	Zswim4 (MGP_SPRETEiJ_G0032415)	Nanos3 (MGP_SPRETEiJ_G0032414)	Brme1 (MGP_SPRETEiJ_G0032413)	Cc2d1a (MGP_SPRETEiJ_G0032412)	Podnl1 (MGP_SPRETEiJ_G0032411)	Dcaf15 (MGP_SPRETEiJ_G0032410)	Rfx1 (MGP_SPRETEiJ_G0032409)	MGP_SPRETEiJ_G0032408
Steppe mouse	MODERN SPECIES	2800	Prdx2 (ENSMSIG00000013681)	Gm49661 (ENSMSIG00000013769)	Rnaseh2a (ENSMSIG00000013788)	Rtbdn (ENSMSIG00000013845)	ENSMSIG00000013886	Dnase2a (ENSMSIG00000013905)	Klf1 (ENSMSIG00000013957)	Gcdh (ENSMSIG00000013969)	Syce2 (ENSMSIG00000013998)	Farsa (ENSMSIG00000014035)	ENSMSIG00000014114	ENSMSIG00000014123	Rad23a (ENSMSIG00000014128)	Gadd45gip1 (ENSMSIG00000014154)	Dand5 (ENSMSIG00000014166)	Nfix (ENSMSIG00000014176) ##22	ENSMSIG00000014268	Lyl1 (ENSMSIG00000014285)	Trmt1 (ENSMSIG00000014300)	ENSMSIG00000014409	Ier2 (ENSMSIG00000014426)
Ryukyu mouse	MODERN SPECIES	17	Prdx2 (MGP_CAROLIEiJ_G0031320)	MGP_CAROLIEiJ_G0031319	Rtbdn (MGP_CAROLIEiJ_G0031318)	Mast1 (MGP_CAROLIEiJ_G0031317)	Dnase2a (MGP_CAROLIEiJ_G0031316)	Klf1 (MGP_CAROLIEiJ_G0031315)	Gcdh (MGP_CAROLIEiJ_G0031314)	Syce2 (MGP_CAROLIEiJ_G0031313)	Farsa (MGP_CAROLIEiJ_G0031312)	Calr (MGP_CAROLIEiJ_G0031311)	Rad23a (MGP_CAROLIEiJ_G0031310)	Gadd45gip1 (MGP_CAROLIEiJ_G0031309)	Dand5 (MGP_CAROLIEiJ_G0031308)	MGP_CAROLIEiJ_G0031307	Lyl1 (MGP_CAROLIEiJ_G0031306)	Nfix (MGP_CAROLIEiJ_G0031305) ##22	Trmt1 (MGP_CAROLIEiJ_G0031304)	Nacc1 (MGP_CAROLIEiJ_G0031303)	Ier2 (MGP_CAROLIEiJ_G0031302)	Cacna1a (MGP_CAROLIEiJ_G0031301)	MGP_CAROLIEiJ_G0031300	Mri1 (MGP_CAROLIEiJ_G0031299)	D8Ertd738e (MGP_CAROLIEiJ_G0031298)	Zswim4 (MGP_CAROLIEiJ_G0031297)	Nanos3 (MGP_CAROLIEiJ_G0031296)	Brme1 (MGP_CAROLIEiJ_G0031295)	Cc2d1a (MGP_CAROLIEiJ_G0031294)	Podnl1 (MGP_CAROLIEiJ_G0031293)	Dcaf15 (MGP_CAROLIEiJ_G0031292)	Rfx1 (MGP_CAROLIEiJ_G0031291)	MGP_CAROLIEiJ_G0031290
Shrew mouse	MODERN SPECIES	12	Hook2 (MGP_PahariEiJ_G0022927)	Junb (MGP_PahariEiJ_G0022926)	MGP_PahariEiJ_G0022925	Rnaseh2a (MGP_PahariEiJ_G0022924)	MGP_PahariEiJ_G0022923	Mast1 (MGP_PahariEiJ_G0022922)	Dnase2a (MGP_PahariEiJ_G0022921)	Klf1 (MGP_PahariEiJ_G0022920)	Gcdh (MGP_PahariEiJ_G0022919)	Syce2 (MGP_PahariEiJ_G0022918)	Farsa (MGP_PahariEiJ_G0022917)	Calr (MGP_PahariEiJ_G0022916)	Rad23a (MGP_PahariEiJ_G0022915)	Gadd45gip1 (MGP_PahariEiJ_G0022914)	Dand5 (MGP_PahariEiJ_G0022913)	Nfix (MGP_PahariEiJ_G0022912) ##22	Lyl1 (MGP_PahariEiJ_G0022911)	Nacc1 (MGP_PahariEiJ_G0022909)	Ier2 (MGP_PahariEiJ_G0022908)	Cacna1a (MGP_PahariEiJ_G0022907)	Ccdc130 (MGP_PahariEiJ_G0022906)	Mri1 (MGP_PahariEiJ_G0022905)	D8Ertd738e (MGP_PahariEiJ_G0022904)	Zswim4 (MGP_PahariEiJ_G0022903)	Nanos3 (MGP_PahariEiJ_G0022902)	Brme1 (MGP_PahariEiJ_G0022901)	Cc2d1a (MGP_PahariEiJ_G0022900)	Podnl1 (MGP_PahariEiJ_G0022899)	Dcaf15 (MGP_PahariEiJ_G0022898)	Rfx1 (MGP_PahariEiJ_G0022897)	MGP_PahariEiJ_G0022896
Rat	MODERN SPECIES	10	Best2 (ENSRNOG00000003737)	Hook2 (ENSRNOG00000003682)	Prdx2 (ENSRNOG00000003520)	Thsd8 (ENSRNOG00000003504)	Rnaseh2a (ENSRNOG00000068063)	Rtbdn (ENSRNOG00000043215)	MAST1 (ENSRNOG00000003469)	Dnase2 (ENSRNOG00000023830)	Klf1 (ENSRNOG00000003443)	Gcdh (ENSRNOG00000003307)	Farsa (ENSRNOG00000003149)	Calr (ENSRNOG00000003029)	Rad23a (ENSRNOG00000003026)	Gadd45gip1 (ENSRNOG00000003011)	Dand5 (ENSRNOG00000033368)	Nfix (ENSRNOG00000002983) ##22	Lyl1 (ENSRNOG00000002950)	Trmt1 (ENSRNOG00000002914)	Nacc1 (ENSRNOG00000002864)	Ier2 (ENSRNOG00000067274)	Cacna1a (ENSRNOG00000052707)	Yju2b (ENSRNOG00000008319)	Mri1 (ENSRNOG00000026211)	LOC288913 (ENSRNOG00000049931)	Nanos3 (ENSRNOG00000031593)	Brme1 (ENSRNOG00000025796)	Cc2d1a (ENSRNOG00000006747)	Podnl1 (ENSRNOG00000006741)	Dcaf15 (ENSRNOG00000006551)	Rfx1 (ENSRNOG00000006049)	Rln3 (ENSRNOG00000005911)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1738	Hook2 (ENSNGAG00000022705)	Junb (ENSNGAG00000006939)	Prdx2 (ENSNGAG00000022496)	Rnaseh2a (ENSNGAG00000017988)	Rtbdn (ENSNGAG00000011358)	Mast1 (ENSNGAG00000002377)	Dnase2a (ENSNGAG00000022792)	Klf1 (ENSNGAG00000022931)	Gcdh (ENSNGAG00000022070)	Syce2 (ENSNGAG00000023150)	Farsa (ENSNGAG00000018353)	Calr (ENSNGAG00000011286)	Rad23a (ENSNGAG00000022186)	Gadd45gip1 (ENSNGAG00000022030)	Dand5 (ENSNGAG00000021187)	Nfix (ENSNGAG00000016724) ##22	Lyl1 (ENSNGAG00000014673)	Trmt1 (ENSNGAG00000022486)	Nacc1 (ENSNGAG00000021982)	Cacna1a (ENSNGAG00000000916)	ENSNGAG00000011971	Mri1 (ENSNGAG00000022102)	D8Ertd738e (ENSNGAG00000016091)	Zswim4 (ENSNGAG00000001121)	Nanos3 (ENSNGAG00000020486)	ENSNGAG00000007857	Cc2d1a (ENSNGAG00000020333)	Podnl1 (ENSNGAG00000000890)	Dcaf15 (ENSNGAG00000009961)	Rfx1 (ENSNGAG00000015296)	Rln3 (ENSNGAG00000014225)
Lesser Egyptian jerboa	MODERN SPECIES	234	Get3 (ENSJJAG00000017121)	Best2 (ENSJJAG00000018238)	Hook2 (ENSJJAG00000015256)	Junb (ENSJJAG00000012180)	ENSJJAG00000016489	Rnaseh2a (ENSJJAG00000017547)	ENSJJAG00000019577	ENSJJAG00000020016	Dnase2a (ENSJJAG00000000087)	Klf1 (ENSJJAG00000004209)	Gcdh (ENSJJAG00000018993)	Syce2 (ENSJJAG00000021380)	Calr (ENSJJAG00000000115)	Rad23a (ENSJJAG00000000606)	Dand5 (ENSJJAG00000011222)	Nfix (ENSJJAG00000012047) ##22	Lyl1 (ENSJJAG00000015977)	Trmt1 (ENSJJAG00000017154)	Nacc1 (ENSJJAG00000000199)	ENSJJAG00000012119	Ier2 (ENSJJAG00000015305)	Cacna1a (ENSJJAG00000020086)	ENSJJAG00000015193	Mri1 (ENSJJAG00000018104)	D8Ertd738e (ENSJJAG00000019133)	Zswim4 (ENSJJAG00000019795)	Nanos3 (ENSJJAG00000000545)	Cc2d1a (ENSJJAG00000011117)	Podnl1 (ENSJJAG00000019479)	Dcaf15 (ENSJJAG00000020594)	Rfx1 (ENSJJAG00000007901)
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Hystricomorpha	ANCESTRAL SPECIES	55	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a.l	ENSGT00950000182915.b.b.a.a.k.b	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b
Naked mole-rat female	MODERN SPECIES	21	GET3 (ENSHGLG00000010735)	BEST2 (ENSHGLG00000016965)	HOOK2 (ENSHGLG00000017395)	ENSHGLG00000018801	ENSHGLG00000043972	DNASE2 (ENSHGLG00000016378)	KLF1 (ENSHGLG00000015876)	GCDH (ENSHGLG00000006522)	ENSHGLG00000046129	ENSHGLG00000043005	CALR (ENSHGLG00000009088)	RAD23A (ENSHGLG00000044031)	ENSHGLG00000005609	DAND5 (ENSHGLG00000040694)	ENSHGLG00000045273	NFIX (ENSHGLG00000010071) ##22	LYL1 (ENSHGLG00000046929)	NACC1 (ENSHGLG00000008369)	ENSHGLG00000050447	IER2 (ENSHGLG00000050933)	YJU2B (ENSHGLG00000008180)	MRI1 (ENSHGLG00000010969)	C19orf53 (ENSHGLG00000035084)	ZSWIM4 (ENSHGLG00000019264)	NANOS3 (ENSHGLG00000019378)	ENSHGLG00000003199	PODNL1 (ENSHGLG00000008104)	DCAF15 (ENSHGLG00000010729)	RFX1 (ENSHGLG00000013500)	RLN3 (ENSHGLG00000006860)	IL27RA (ENSHGLG00000008513)
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a.l	ENSGT00950000182915.b.b.a.a.k.b	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b
Guinea pig	MODERN SPECIES	42	BEST2 (ENSCPOG00000000768)	HOOK2 (ENSCPOG00000000771)	JUNB (ENSCPOG00000020703)	PRDX2 (ENSCPOG00000023583)	RNASEH2A (ENSCPOG00000038877)	RTBDN (ENSCPOG00000000774)	MAST1 (ENSCPOG00000000777)	DNASE2 (ENSCPOG00000000783)	KLF1 (ENSCPOG00000000784)	GCDH (ENSCPOG00000027058)	ENSCPOG00000033097	FARSA (ENSCPOG00000000787)	CALR (ENSCPOG00000000791)	GADD45GIP1 (ENSCPOG00000024072)	RAD23A (ENSCPOG00000037407)	NFIX (ENSCPOG00000022563) ##22	LYL1 (ENSCPOG00000036111)	TRMT1 (ENSCPOG00000011754)	NACC1 (ENSCPOG00000022222)	CACNA1A (ENSCPOG00000025184)	YJU2B (ENSCPOG00000006545)	MRI1 (ENSCPOG00000013191)	C19orf53 (ENSCPOG00000013192)	NANOS3 (ENSCPOG00000020727)	CC2D1A (ENSCPOG00000004231)	PODNL1 (ENSCPOG00000021831)	DCAF15 (ENSCPOG00000010084)	RFX1 (ENSCPOG00000010089)	RLN3 (ENSCPOG00000013564)	IL27RA (ENSCPOG00000013567)	IFITM10 (ENSCPOG00000019284)
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a.l	ENSGT00950000182915.b.b.a.a.k.b	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b
Degu	MODERN SPECIES	114	JUNB (ENSODEG00000019944)	PRDX2 (ENSODEG00000009999)	RNASEH2A (ENSODEG00000009772)	RTBDN (ENSODEG00000011942)	ENSODEG00000012916	ENSODEG00000011144	DNASE2 (ENSODEG00000009845)	KLF1 (ENSODEG00000009692)	GCDH (ENSODEG00000010247)	ENSODEG00000010928	FARSA (ENSODEG00000010433)	CALR (ENSODEG00000010711)	RAD23A (ENSODEG00000011287)	GADD45GIP1 (ENSODEG00000010728)	ENSODEG00000010129	NFIX (ENSODEG00000010171) ##22	LYL1 (ENSODEG00000010992)	TRMT1 (ENSODEG00000010323)	ENSODEG00000019786	NACC1 (ENSODEG00000009255)	IER2 (ENSODEG00000013532)	CACNA1A (ENSODEG00000009256)	YJU2B (ENSODEG00000009976)	ENSODEG00000010083	C19orf53 (ENSODEG00000009270)	ZSWIM4 (ENSODEG00000009901)	NANOS3 (ENSODEG00000008907)	CC2D1A (ENSODEG00000009306)	PODNL1 (ENSODEG00000009051)	ENSODEG00000011425	DCAF15 (ENSODEG00000010421)
Long-tailed chinchilla	MODERN SPECIES	122	HOOK2 (ENSCLAG00000012972)	JUNB (ENSCLAG00000018028)	PRDX2 (ENSCLAG00000013924)	RNASEH2A (ENSCLAG00000014930)	RTBDN (ENSCLAG00000014391)	MAST1 (ENSCLAG00000012224)	DNASE2 (ENSCLAG00000012983)	KLF1 (ENSCLAG00000013218)	GCDH (ENSCLAG00000015590)	SYCE2 (ENSCLAG00000014420)	FARSA (ENSCLAG00000015489)	CALR (ENSCLAG00000012923)	RAD23A (ENSCLAG00000016638)	GADD45GIP1 (ENSCLAG00000015799)	DAND5 (ENSCLAG00000011402)	NFIX (ENSCLAG00000013479) ##22	LYL1 (ENSCLAG00000014483)	TRMT1 (ENSCLAG00000015295)	NACC1 (ENSCLAG00000016122)	IER2 (ENSCLAG00000015309)	CACNA1A (ENSCLAG00000013282)	YJU2B (ENSCLAG00000011790)	MRI1 (ENSCLAG00000013025)	C19orf53 (ENSCLAG00000011489)	ZSWIM4 (ENSCLAG00000011642)	NANOS3 (ENSCLAG00000015139)	ENSCLAG00000015002	CC2D1A (ENSCLAG00000012998)	PODNL1 (ENSCLAG00000013361)	DCAF15 (ENSCLAG00000015146)	RFX1 (ENSCLAG00000013348)
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Marmotini	ANCESTRAL SPECIES	41	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Marmotini_b	ANCESTRAL SPECIES	40	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00860000135639	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Arctic ground squirrel	MODERN SPECIES	217	JUNB (ENSUPAG00010007878)	ENSUPAG00010007882	THSD8 (ENSUPAG00010007901)	RNASEH2A (ENSUPAG00010007909)	RTBDN (ENSUPAG00010007981)	MAST1 (ENSUPAG00010007994)	DNASE2 (ENSUPAG00010008053)	KLF1 (ENSUPAG00010008092)	GCDH (ENSUPAG00010008102)	SYCE2 (ENSUPAG00010008135)	FARSA (ENSUPAG00010008158)	CALR (ENSUPAG00010008184)	RAD23A (ENSUPAG00010008197)	GADD45GIP1 (ENSUPAG00010008222)	DAND5 (ENSUPAG00010008227)	NFIX (ENSUPAG00010008230) ##22	ENSUPAG00010008329	LYL1 (ENSUPAG00010008333)	TRMT1 (ENSUPAG00010008343)	NACC1 (ENSUPAG00010008354)	STX10 (ENSUPAG00010008362)	IER2 (ENSUPAG00010008375)	CACNA1A (ENSUPAG00010008388)	YJU2B (ENSUPAG00010011639)	MRI1 (ENSUPAG00010011651)	C19orf53 (ENSUPAG00010011656)	ZSWIM4 (ENSUPAG00010011666)	NANOS3 (ENSUPAG00010011697)	BRME1 (ENSUPAG00010011699)	CC2D1A (ENSUPAG00010011706)	PODNL1 (ENSUPAG00010011723)
Squirrel	MODERN SPECIES	259	HOOK2 (ENSSTOG00000011709)	JUNB (ENSSTOG00000031929)	ENSSTOG00000025862	RNASEH2A (ENSSTOG00000006224)	Rtbdn (ENSSTOG00000006228)	MAST1 (ENSSTOG00000008668)	DNASE2 (ENSSTOG00000008712)	KLF1 (ENSSTOG00000021956)	GCDH (ENSSTOG00000008724)	SYCE2 (ENSSTOG00000008737)	FARSA (ENSSTOG00000008748)	CALR (ENSSTOG00000008774)	RAD23A (ENSSTOG00000024117)	GADD45GIP1 (ENSSTOG00000016419)	DAND5 (ENSSTOG00000016420)	NFIX (ENSSTOG00000007848) ##22	LYL1 (ENSSTOG00000028401)	TRMT1 (ENSSTOG00000012531)	NACC1 (ENSSTOG00000007865)	STX10 (ENSSTOG00000007880)	IER2 (ENSSTOG00000007900)	CACNA1A (ENSSTOG00000024862)	YJU2B (ENSSTOG00000006281)	MRI1 (ENSSTOG00000020750)	C19orf53 (ENSSTOG00000011602)	ZSWIM4 (ENSSTOG00000021055)	NANOS3 (ENSSTOG00000024797)	BRME1 (ENSSTOG00000028732)	CC2D1A (ENSSTOG00000019980)	PODNL1 (ENSSTOG00000021014)	DCAF15 (ENSSTOG00000024329)
Alpin marmot	MODERN SPECIES	24	JUNB (ENSMMMG00000020869)	ENSMMMG00000020873	THSD8 (ENSMMMG00000020877)	RNASEH2A (ENSMMMG00000020879)	RTBDN (ENSMMMG00000020903)	MAST1 (ENSMMMG00000020911)	DNASE2 (ENSMMMG00000020947)	KLF1 (ENSMMMG00000020960)	GCDH (ENSMMMG00000020963)	SYCE2 (ENSMMMG00000020981)	FARSA (ENSMMMG00000020996)	CALR (ENSMMMG00000021010)	ENSMMMG00000021016	GADD45GIP1 (ENSMMMG00000021032)	DAND5 (ENSMMMG00000021038)	NFIX (ENSMMMG00000021044) ##22	LYL1 (ENSMMMG00000021069)	TRMT1 (ENSMMMG00000021080)	NACC1 (ENSMMMG00000021510)	STX10 (ENSMMMG00000021518)	ENSMMMG00000021534	YJU2B (ENSMMMG00000021549)	ENSMMMG00000021583	ZSWIM4 (ENSMMMG00000021589)	NANOS3 (ENSMMMG00000021601)	ENSMMMG00000021612	PODNL1 (ENSMMMG00000021701)	DCAF15 (ENSMMMG00000021706)	RFX1 (ENSMMMG00000021740)	RLN3 (ENSMMMG00000021867)	IL27RA (ENSMMMG00000021869)
Eurasian red squirrel	MODERN SPECIES	7	JUNB (ENSSVLG00005025317)	PRDX2 (ENSSVLG00005016837)	THSD8 (ENSSVLG00005016905)	RNASEH2A (ENSSVLG00005016950)	RTBDN (ENSSVLG00005016997)	MAST1 (ENSSVLG00005017111)	DNASE2 (ENSSVLG00005017585)	KLF1 (ENSSVLG00005017619)	GCDH (ENSSVLG00005017674)	ENSSVLG00005017827	FARSA (ENSSVLG00005017880)	CALR (ENSSVLG00005017951)	RAD23A (ENSSVLG00005018009)	GADD45GIP1 (ENSSVLG00005018098)	DAND5 (ENSSVLG00005018136)	NFIX (ENSSVLG00005018211) ##22	LYL1 (ENSSVLG00005018485)	TRMT1 (ENSSVLG00005018534)	NACC1 (ENSSVLG00005018614)	STX10 (ENSSVLG00005018658)	IER2 (ENSSVLG00005018745)	CACNA1A (ENSSVLG00005020388)	ENSSVLG00005024893	ENSSVLG00005024924	ENSSVLG00005024939	ENSSVLG00005024956 ##13	YJU2B (ENSSVLG00005024977)	MRI1 (ENSSVLG00005025000)	C19orf53 (ENSSVLG00005025010)	ZSWIM4 (ENSSVLG00005025031)	NANOS3 (ENSSVLG00005025060)
Lagomorpha	ANCESTRAL SPECIES	335																ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b
Pika	MODERN SPECIES	4332																ENSOPRG00000009437 ##22	ENSOPRG00000009458	ENSOPRG00000009471
Rabbit	MODERN SPECIES	715																ENSOCUG00000026440 ##22	CACNA1A (ENSOCUG00000011985)
Primates	ANCESTRAL SPECIES	18	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Strepsirrhini	ANCESTRAL SPECIES	28	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Lemuriformes	ANCESTRAL SPECIES	35	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Mouse lemur	MODERN SPECIES	16	HOOK2 (ENSMICG00000016176)	JUNB (ENSMICG00000027217)	PRDX2 (ENSMICG00000016211)	RNASEH2A (ENSMICG00000016430)	RTBDN (ENSMICG00000028676)	MAST1 (ENSMICG00000016221)	ENSMICG00000016255	KLF1 (ENSMICG00000016260)	SYCE2 (ENSMICG00000016268)	GCDH (ENSMICG00000016264)	FARSA (ENSMICG00000016272)	CALR (ENSMICG00000016284)	RAD23A (ENSMICG00000016290)	GADD45GIP1 (ENSMICG00000038609)	DAND5 (ENSMICG00000046835)	NFIX (ENSMICG00000000785) ##22	LYL1 (ENSMICG00000045046)	TRMT1 (ENSMICG00000000793)	ENSMICG00000035600	STX10 (ENSMICG00000000814)	CACNA1A (ENSMICG00000000823)	ENSMICG00000029654	YJU2B (ENSMICG00000011911)	MRI1 (ENSMICG00000031875)	CIB3 (ENSMICG00000013968)	FAM32A (ENSMICG00000048134)	AP1M1 (ENSMICG00000013728)	KLF2 (ENSMICG00000035322)	EPS15L1 (ENSMICG00000004549)	CALR3 (ENSMICG00000026331)	C19orf44 (ENSMICG00000004564)
Lemuriformes_a	ANCESTRAL SPECIES	25	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Greater bamboo lemur	MODERN SPECIES	1098						MAST1 (ENSPSMG00000004915)	DNASE2 (ENSPSMG00000004835)	KLF1 (ENSPSMG00000004830)	ENSPSMG00000004824	GCDH (ENSPSMG00000004781)	ENSPSMG00000004731	ENSPSMG00000004705	RAD23A (ENSPSMG00000004675)	GADD45GIP1 (ENSPSMG00000004634)	DAND5 (ENSPSMG00000004632)	NFIX (ENSPSMG00000004616) ##22	LYL1 (ENSPSMG00000004557)	TRMT1 (ENSPSMG00000004538)	NACC1 (ENSPSMG00000004448)	STX10 (ENSPSMG00000004413)	IER2 (ENSPSMG00000004370)	CACNA1A (ENSPSMG00000002497)	ENSPSMG00000001179	YJU2B (ENSPSMG00000001159)	MRI1 (ENSPSMG00000001122)	C19orf53 (ENSPSMG00000001107)	ZSWIM4 (ENSPSMG00000001098)	NANOS3 (ENSPSMG00000001065)	BRME1 (ENSPSMG00000001047)	CC2D1A (ENSPSMG00000000896)	PODNL1 (ENSPSMG00000000734)
Coquerels sifaka	MODERN SPECIES	226	JUNB (ENSPCOG00000013392)	PRDX2 (ENSPCOG00000023441)	THSD8 (ENSPCOG00000027163)	RNASEH2A (ENSPCOG00000003686)	RTBDN (ENSPCOG00000019035)	MAST1 (ENSPCOG00000010146)	DNASE2 (ENSPCOG00000018438)	KLF1 (ENSPCOG00000024775)	GCDH (ENSPCOG00000027495)	SYCE2 (ENSPCOG00000023390)	FARSA (ENSPCOG00000014412)	CALR (ENSPCOG00000027189)	RAD23A (ENSPCOG00000023819)	GADD45GIP1 (ENSPCOG00000008740)	DAND5 (ENSPCOG00000014620)	NFIX (ENSPCOG00000015718) ##22	LYL1 (ENSPCOG00000027352)	TRMT1 (ENSPCOG00000008653)	NACC1 (ENSPCOG00000028443)	STX10 (ENSPCOG00000027677)	CACNA1A (ENSPCOG00000017466)	ENSPCOG00000024786	YJU2B (ENSPCOG00000014499)	MRI1 (ENSPCOG00000021500)	C19orf53 (ENSPCOG00000014098)	ZSWIM4 (ENSPCOG00000024403)	NANOS3 (ENSPCOG00000018814)	BRME1 (ENSPCOG00000010238)	CC2D1A (ENSPCOG00000016820)	PODNL1 (ENSPCOG00000007369)	DCAF15 (ENSPCOG00000016926)
Bushbaby	MODERN SPECIES	242	BEST2 (ENSOGAG00000026961)	HOOK2 (ENSOGAG00000028323)	JUNB (ENSOGAG00000025664)	ENSOGAG00000024998	RNASEH2A (ENSOGAG00000012214)	RTBDN (ENSOGAG00000012219)	MAST1 (ENSOGAG00000012223)	DNASE2 (ENSOGAG00000034724)	KLF1 (ENSOGAG00000025438)	GCDH (ENSOGAG00000012240)	FARSA (ENSOGAG00000012243)	CALR (ENSOGAG00000012249)	RAD23A (ENSOGAG00000007693)	GADD45GIP1 (ENSOGAG00000028560)	DAND5 (ENSOGAG00000026803)	NFIX (ENSOGAG00000017133) ##22	LYL1 (ENSOGAG00000033339)	TRMT1 (ENSOGAG00000025576)	NACC1 (ENSOGAG00000031864)	STX10 (ENSOGAG00000025310)	IER2 (ENSOGAG00000032686)	CACNA1A (ENSOGAG00000001691)	ENSOGAG00000033117	YJU2B (ENSOGAG00000001102)	MRI1 (ENSOGAG00000007183)	C19orf53 (ENSOGAG00000007185)	ZSWIM4 (ENSOGAG00000007186)	NANOS3 (ENSOGAG00000007190)	BRME1 (ENSOGAG00000027547)	CC2D1A (ENSOGAG00000007192)	PODNL1 (ENSOGAG00000007200)
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Tarsier	MODERN SPECIES	1688				RNASEH2A (ENSTSYG00000025418)	RTBDN (ENSTSYG00000002450)	MAST1 (ENSTSYG00000003492)	DNASE2 (ENSTSYG00000028119)	KLF1 (ENSTSYG00000029943)	GCDH (ENSTSYG00000003920)	SYCE2 (ENSTSYG00000036192)	FARSA (ENSTSYG00000002595)	CALR (ENSTSYG00000033515)	RAD23A (ENSTSYG00000007634)	GADD45GIP1 (ENSTSYG00000033228)	DAND5 (ENSTSYG00000030904)	NFIX (ENSTSYG00000007548) ##22
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732.m	ENSGT00390000011740.o.a	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Cebidae	ANCESTRAL SPECIES	20	ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732.m	ENSGT00390000011740.o.a.c.a	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732.m	ENSGT00390000011740.o.a.c.a	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Bolivian squirrel monkey	MODERN SPECIES	192	JUNB (ENSSBOG00000019470)	PRDX2 (ENSSBOG00000034677)	THSD8 (ENSSBOG00000036213)	RNASEH2A (ENSSBOG00000033164)	RTBDN (ENSSBOG00000023703)	MAST1 (ENSSBOG00000020496)	DNASE2 (ENSSBOG00000011199)	KLF1 (ENSSBOG00000034347)	GCDH (ENSSBOG00000021506)	SYCE2 (ENSSBOG00000022841)	FARSA (ENSSBOG00000031362)	CALR (ENSSBOG00000019002)	RAD23A (ENSSBOG00000023231)	GADD45GIP1 (ENSSBOG00000022567)	DAND5 (ENSSBOG00000027807)	NFIX (ENSSBOG00000036002) ##22	LYL1 (ENSSBOG00000035321)	TRMT1 (ENSSBOG00000028861)	NACC1 (ENSSBOG00000029763)	STX10 (ENSSBOG00000028486)	CACNA1A (ENSSBOG00000024258)	ENSSBOG00000028928	YJU2B (ENSSBOG00000022718)	ENSSBOG00000034840	C19orf53 (ENSSBOG00000024373)	ZSWIM4 (ENSSBOG00000010394)	NANOS3 (ENSSBOG00000020970)	BRME1 (ENSSBOG00000005665)	CC2D1A (ENSSBOG00000030926)	PODNL1 (ENSSBOG00000016931)	DCAF15 (ENSSBOG00000028396)
Capuchin	MODERN SPECIES	234	JUNB (ENSCCAG00000020250)	PRDX2 (ENSCCAG00000013200)	THSD8 (ENSCCAG00000030346)	RNASEH2A (ENSCCAG00000030453)	RTBDN (ENSCCAG00000023878)	MAST1 (ENSCCAG00000036093)	ENSCCAG00000035903	KLF1 (ENSCCAG00000022356)	GCDH (ENSCCAG00000027806)	SYCE2 (ENSCCAG00000033990)	FARSA (ENSCCAG00000028176)	CALR (ENSCCAG00000000456)	RAD23A (ENSCCAG00000030313)	GADD45GIP1 (ENSCCAG00000036734)	DAND5 (ENSCCAG00000018636)	NFIX (ENSCCAG00000022096) ##22	LYL1 (ENSCCAG00000036697)	TRMT1 (ENSCCAG00000022263)	NACC1 (ENSCCAG00000033562)	STX10 (ENSCCAG00000035795)	CACNA1A (ENSCCAG00000025667)	ENSCCAG00000005128	YJU2B (ENSCCAG00000022524)	MRI1 (ENSCCAG00000014292)	ENSCCAG00000036550	ZSWIM4 (ENSCCAG00000014810)	NANOS3 (ENSCCAG00000036253)	BRME1 (ENSCCAG00000033537)	CC2D1A (ENSCCAG00000028774)	PODNL1 (ENSCCAG00000034546)	ENSCCAG00000020314
Marmoset	MODERN SPECIES	14	HOOK2 (ENSCJAG00000004942)	JUNB (ENSCJAG00000078765)	PRDX2 (ENSCJAG00000004882)	RNASEH2A (ENSCJAG00000004873)	RTBDN (ENSCJAG00000004863)	MAST1 (ENSCJAG00000004772)	DNASE2 (ENSCJAG00000004764)	KLF1 (ENSCJAG00000004762)	GCDH (ENSCJAG00000004741)	SYCE2 (ENSCJAG00000004733)	FARSA (ENSCJAG00000004686)	CALR (ENSCJAG00000004650)	ENSCJAG00000004494	GADD45GIP1 (ENSCJAG00000004645)	DAND5 (ENSCJAG00000004639)	NFIX (ENSCJAG00000004603) ##22	LYL1 (ENSCJAG00000004598)	TRMT1 (ENSCJAG00000004566)	NACC1 (ENSCJAG00000043018)	STX10 (ENSCJAG00000004519)	IER2 (ENSCJAG00000045878)	CACNA1A (ENSCJAG00000004458)	YJU2B (ENSCJAG00000004443)	MRI1 (ENSCJAG00000044187)	ENSCJAG00000083863	ZSWIM4 (ENSCJAG00000004397)	NANOS3 (ENSCJAG00000004388)	ENSCJAG00000004372	CC2D1A (ENSCJAG00000004333)	PODNL1 (ENSCJAG00000004297)	DCAF15 (ENSCJAG00000005014)
Mas night monkey	MODERN SPECIES	937	JUNB (ENSANAG00000018377)	PRDX2 (ENSANAG00000026462)	THSD8 (ENSANAG00000035604)	RNASEH2A (ENSANAG00000037932)	RTBDN (ENSANAG00000037449)	MAST1 (ENSANAG00000020839)	DNASE2 (ENSANAG00000021770)	GCDH (ENSANAG00000036490)	KLF1 (ENSANAG00000036457)	SYCE2 (ENSANAG00000036720)	FARSA (ENSANAG00000037420)	CALR (ENSANAG00000021327)	RAD23A (ENSANAG00000037597)	GADD45GIP1 (ENSANAG00000021876)	DAND5 (ENSANAG00000022153)	NFIX (ENSANAG00000009093) ##22	LYL1 (ENSANAG00000037857)	TRMT1 (ENSANAG00000023016)	NACC1 (ENSANAG00000037555)	STX10 (ENSANAG00000037876)
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Hominidae	ANCESTRAL SPECIES		ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Pan	ANCESTRAL SPECIES	14	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00900000143204.b	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Chimpanzee	MODERN SPECIES	10	PRDX2 (ENSPTRG00000010541)	THSD8 (ENSPTRG00000049528)	RNASEH2A (ENSPTRG00000010542)	RTBDN (ENSPTRG00000010543)	MAST1 (ENSPTRG00000010545)	DNASE2 (ENSPTRG00000010546)	KLF1 (ENSPTRG00000010547)	GCDH (ENSPTRG00000010548)	ENSPTRG00000050317	SYCE2 (ENSPTRG00000010549)	FARSA (ENSPTRG00000010550)	CALR (ENSPTRG00000010551)	RAD23A (ENSPTRG00000010552)	GADD45GIP1 (ENSPTRG00000010553)	DAND5 (ENSPTRG00000010554)	NFIX (ENSPTRG00000010555) ##22	LYL1 (ENSPTRG00000049311)	TRMT1 (ENSPTRG00000010557)	NACC1 (ENSPTRG00000010558)	STX10 (ENSPTRG00000010559)	IER2 (ENSPTRG00000049474)	CACNA1A (ENSPTRG00000010561)	ENSPTRG00000047800	YJU2B (ENSPTRG00000010562)	MRI1 (ENSPTRG00000010563)	C19H19orf53 (ENSPTRG00000010565)	ZSWIM4 (ENSPTRG00000010567)	NANOS3 (ENSPTRG00000010568)	BRME1 (ENSPTRG00000010569)	CC2D1A (ENSPTRG00000010571)	PODNL1 (ENSPTRG00000010572)
Bonobo	MODERN SPECIES	10	JUNB (ENSPPAG00000024799)	PRDX2 (ENSPPAG00000034246)	THSD8 (ENSPPAG00000028013)	RNASEH2A (ENSPPAG00000028092)	RTBDN (ENSPPAG00000025282)	MAST1 (ENSPPAG00000035621)	DNASE2 (ENSPPAG00000034169)	KLF1 (ENSPPAG00000039322)	GCDH (ENSPPAG00000026417)	ENSPPAG00000027273	SYCE2 (ENSPPAG00000028078)	FARSA (ENSPPAG00000034266)	CALR (ENSPPAG00000006666)	RAD23A (ENSPPAG00000016916)	GADD45GIP1 (ENSPPAG00000039356)	NFIX (ENSPPAG00000027719) ##22	LYL1 (ENSPPAG00000028076)	ENSPPAG00000031484	NACC1 (ENSPPAG00000033614)	STX10 (ENSPPAG00000042146)	IER2 (ENSPPAG00000008761)	CACNA1A (ENSPPAG00000017516)	ENSPPAG00000033516	YJU2B (ENSPPAG00000028983)	MRI1 (ENSPPAG00000033346)	C19orf53 (ENSPPAG00000039375)	ZSWIM4 (ENSPPAG00000025698)	NANOS3 (ENSPPAG00000032168)	BRME1 (ENSPPAG00000041052)	ENSPPAG00000013237	PODNL1 (ENSPPAG00000017952)
Human	MODERN SPECIES	10	JUNB (ENSG00000171223)	PRDX2 (ENSG00000167815)	THSD8 (ENSG00000284491)	RNASEH2A (ENSG00000104889)	RTBDN (ENSG00000132026)	MAST1 (ENSG00000105613)	DNASE2 (ENSG00000105612)	KLF1 (ENSG00000105610)	GCDH (ENSG00000105607)	SYCE2 (ENSG00000161860)	FARSA (ENSG00000179115)	CALR (ENSG00000179218)	RAD23A (ENSG00000179262)	GADD45GIP1 (ENSG00000179271)	DAND5 (ENSG00000179284)	NFIX (ENSG00000008441) ##22	LYL1 (ENSG00000104903)	TRMT1 (ENSG00000104907)	NACC1 (ENSG00000160877)	STX10 (ENSG00000104915)	IER2 (ENSG00000160888)	CACNA1A (ENSG00000141837)	YJU2B (ENSG00000104957)	MRI1 (ENSG00000037757)	C19orf53 (ENSG00000104979)	ZSWIM4 (ENSG00000132003)	NANOS3 (ENSG00000187556)	BRME1 (ENSG00000132016)	CC2D1A (ENSG00000132024)	PODNL1 (ENSG00000132000)	DCAF15 (ENSG00000132017)
Gorilla	MODERN SPECIES	10	JUNB (ENSGGOG00000005566)	PRDX2 (ENSGGOG00000025089)	THSD8 (ENSGGOG00000037364)	RNASEH2A (ENSGGOG00000005846)	RTBDN (ENSGGOG00000001903)	MAST1 (ENSGGOG00000003390)	DNASE2 (ENSGGOG00000003402)	KLF1 (ENSGGOG00000003408)	GCDH (ENSGGOG00000003411)	ENSGGOG00000003416	FARSA (ENSGGOG00000003418)	CALR (ENSGGOG00000016129)	RAD23A (ENSGGOG00000023403)	GADD45GIP1 (ENSGGOG00000022807)	DAND5 (ENSGGOG00000009692)	NFIX (ENSGGOG00000001831) ##22	LYL1 (ENSGGOG00000023512)	TRMT1 (ENSGGOG00000014007)	NACC1 (ENSGGOG00000022388)	STX10 (ENSGGOG00000009480)	IER2 (ENSGGOG00000043951)	ENSGGOG00000008660	ENSGGOG00000042836	YJU2B (ENSGGOG00000006623)	MRI1 (ENSGGOG00000006628)	C19orf53 (ENSGGOG00000027024)	ENSGGOG00000011452	NANOS3 (ENSGGOG00000000964)	BRME1 (ENSGGOG00000000965)	CC2D1A (ENSGGOG00000004396)	PODNL1 (ENSGGOG00000004407)
Orangutan	MODERN SPECIES	10	HOOK2 (ENSPPYG00000009606)	JUNB (ENSPPYG00000034415)	PRDX2 (ENSPPYG00000009607)	THSD8 (ENSPPYG00000035108)	RNASEH2A (ENSPPYG00000009608)	ENSPPYG00000009609	MAST1 (ENSPPYG00000009610)	DNASE2 (ENSPPYG00000009611)	KLF1 (ENSPPYG00000009612)	GCDH (ENSPPYG00000009613)	FARSA (ENSPPYG00000009615)	CALR (ENSPPYG00000009616)	RAD23A (ENSPPYG00000009617)	GADD45GIP1 (ENSPPYG00000038376)	DAND5 (ENSPPYG00000009619)	ENSPPYG00000009620 ##22	LYL1 (ENSPPYG00000009621)	TRMT1 (ENSPPYG00000009622)	NACC1 (ENSPPYG00000009623)	STX10 (ENSPPYG00000009624)	IER2 (ENSPPYG00000009625)	CACNA1A (ENSPPYG00000009626)	YJU2B (ENSPPYG00000010569)	MRI1 (ENSPPYG00000010570)	C19H19orf53 (ENSPPYG00000010571)	ZSWIM4 (ENSPPYG00000039708)	NANOS3 (ENSPPYG00000009627)	BRME1 (ENSPPYG00000009628)	CC2D1A (ENSPPYG00000009629)	PODNL1 (ENSPPYG00000030919)	DCAF15 (ENSPPYG00000009630)
Gibbon	MODERN SPECIES		PRDX2 (ENSNLEG00000012800)	RNASEH2A (ENSNLEG00000012806)	ENSNLEG00000012830	MAST1 (ENSNLEG00000012834)	DNASE2 (ENSNLEG00000012861)	KLF1 (ENSNLEG00000012868)	ENSNLEG00000029024	GCDH (ENSNLEG00000012871)	ENSNLEG00000034095	FARSA (ENSNLEG00000012899)	ENSNLEG00000012957	CALR (ENSNLEG00000012958)	RAD23A (ENSNLEG00000012969)	GADD45GIP1 (ENSNLEG00000012973)	DAND5 (ENSNLEG00000012978)	NFIX (ENSNLEG00000012980) ##22	LYL1 (ENSNLEG00000013010)	ENSNLEG00000013019	ENSNLEG00000028188	STX10 (ENSNLEG00000013030)	IER2 (ENSNLEG00000028353)	CACNA1A (ENSNLEG00000013041)	ENSNLEG00000035060	ENSNLEG00000013132	MRI1 (ENSNLEG00000013138)	C19orf53 (ENSNLEG00000013141)	ENSNLEG00000034372	NANOS3 (ENSNLEG00000034574)	BRME1 (ENSNLEG00000013152)	CC2D1A (ENSNLEG00000013167)	PODNL1 (ENSNLEG00000013191)
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Rhinopithecus	ANCESTRAL SPECIES		ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.o.a.a.a	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Black snub-nosed monkey	MODERN SPECIES	1206					RTBDN (ENSRBIG00000033268)	MAST1 (ENSRBIG00000036674)	ENSRBIG00000038978	KLF1 (ENSRBIG00000036232)	GCDH (ENSRBIG00000031343)	SYCE2 (ENSRBIG00000037872)	FARSA (ENSRBIG00000025585)	CALR (ENSRBIG00000038580)	RAD23A (ENSRBIG00000039630)	GADD45GIP1 (ENSRBIG00000028947)	DAND5 (ENSRBIG00000042172)	NFIX (ENSRBIG00000044362) ##22	LYL1 (ENSRBIG00000000841)	TRMT1 (ENSRBIG00000038324)	NACC1 (ENSRBIG00000038786)	STX10 (ENSRBIG00000035960)	IER2 (ENSRBIG00000002280)	CACNA1A (ENSRBIG00000018638)
Golden snub-nosed monkey	MODERN SPECIES	975	JUNB (ENSRROG00000025586)	PRDX2 (ENSRROG00000035034)	THSD8 (ENSRROG00000036021)	RNASEH2A (ENSRROG00000043799)	RTBDN (ENSRROG00000035994)	MAST1 (ENSRROG00000042288)	DNASE2 (ENSRROG00000029927)	KLF1 (ENSRROG00000041432)	GCDH (ENSRROG00000044762)	SYCE2 (ENSRROG00000032909)	FARSA (ENSRROG00000040046)	CALR (ENSRROG00000044583)	RAD23A (ENSRROG00000040220)	GADD45GIP1 (ENSRROG00000032590)	DAND5 (ENSRROG00000032903)	NFIX (ENSRROG00000033828) ##22	LYL1 (ENSRROG00000030934)	TRMT1 (ENSRROG00000028599)	NACC1 (ENSRROG00000040733)	STX10 (ENSRROG00000040598)	IER2 (ENSRROG00000024202)	CACNA1A (ENSRROG00000037736)	ENSRROG00000044068	YJU2B (ENSRROG00000039770)	MRI1 (ENSRROG00000031188)	ENSRROG00000032872	ZSWIM4 (ENSRROG00000032947)	NANOS3 (ENSRROG00000032642)	BRME1 (ENSRROG00000024917)	CC2D1A (ENSRROG00000043482)	PODNL1 (ENSRROG00000036501)
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987
Vervet Monkey	MODERN SPECIES	25	HOOK2 (ENSCSAG00000006578)	JUNB (ENSCSAG00000018838)	PRDX2 (ENSCSAG00000006571)	RNASEH2A (ENSCSAG00000006567)	RTBDN (ENSCSAG00000006564)	MAST1 (ENSCSAG00000006558)	DNASE2 (ENSCSAG00000006550)	KLF1 (ENSCSAG00000006545)	GCDH (ENSCSAG00000006539)	SYCE2 (ENSCSAG00000006533)	FARSA (ENSCSAG00000006530)	CALR (ENSCSAG00000006527)	RAD23A (ENSCSAG00000006523)	GADD45GIP1 (ENSCSAG00000006518)	DAND5 (ENSCSAG00000006514)	NFIX (ENSCSAG00000006510) ##22	LYL1 (ENSCSAG00000006504)	TRMT1 (ENSCSAG00000006500)	NACC1 (ENSCSAG00000006493)	STX10 (ENSCSAG00000006490)	IER2 (ENSCSAG00000018839)	CACNA1A (ENSCSAG00000006482)	YJU2B (ENSCSAG00000006473)	MRI1 (ENSCSAG00000006463)	C19orf53 (ENSCSAG00000006444)	ZSWIM4 (ENSCSAG00000006437)	NANOS3 (ENSCSAG00000006428)	BRME1 (ENSCSAG00000006425)	CC2D1A (ENSCSAG00000006407)	PODNL1 (ENSCSAG00000006396)	DCAF15 (ENSCSAG00000006394)
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01100000266868	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Macaca	ANCESTRAL SPECIES	21	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01100000266868	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Pig-tailed macaque	MODERN SPECIES	76	HOOK2 (ENSMNEG00000006128)	JUNB (ENSMNEG00000006142)	PRDX2 (ENSMNEG00000042230)	RNASEH2A (ENSMNEG00000033054)	RTBDN (ENSMNEG00000031687)	MAST1 (ENSMNEG00000038625)	DNASE2 (ENSMNEG00000038975)	KLF1 (ENSMNEG00000030783)	GCDH (ENSMNEG00000035137)	SYCE2 (ENSMNEG00000032767)	FARSA (ENSMNEG00000043866)	CALR (ENSMNEG00000034740)	RAD23A (ENSMNEG00000042153)	GADD45GIP1 (ENSMNEG00000033121)	DAND5 (ENSMNEG00000040891)	NFIX (ENSMNEG00000032823) ##22	LYL1 (ENSMNEG00000013370)	TRMT1 (ENSMNEG00000037867)	NACC1 (ENSMNEG00000001897)	STX10 (ENSMNEG00000039402)	IER2 (ENSMNEG00000005809)	CACNA1A (ENSMNEG00000045532)	ENSMNEG00000032415	YJU2B (ENSMNEG00000032777)	MRI1 (ENSMNEG00000002628)	C19orf53 (ENSMNEG00000030499)	ZSWIM4 (ENSMNEG00000040630)	NANOS3 (ENSMNEG00000028898)	BRME1 (ENSMNEG00000042593)	CC2D1A (ENSMNEG00000044902)	PODNL1 (ENSMNEG00000029074)
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00940000161361	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828.o.b.b.b	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00940000156518.C	ENSGT01100000263539.b.a.a.a.a.a.a.a.a.a.a.a.a	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b
Crab-eating macaque	MODERN SPECIES	10	ZNF791 (ENSMFAG00000036181) ##13	MAN2B1 (ENSMFAG00000042986)	ENSMFAG00000052456	ENSMFAG00000031614	RNASEH2A (ENSMFAG00000002011)	RTBDN (ENSMFAG00000038313)	MAST1 (ENSMFAG00000041128)	DNASE2 (ENSMFAG00000003665)	KLF1 (ENSMFAG00000044883)	GCDH (ENSMFAG00000003761)	FARSA (ENSMFAG00000030595)	CALR (ENSMFAG00000040740)	RAD23A (ENSMFAG00000003404)	GADD45GIP1 (ENSMFAG00000048260)	DAND5 (ENSMFAG00000033697)	NFIX (ENSMFAG00000038849) ##22	LYL1 (ENSMFAG00000032986)	TRMT1 (ENSMFAG00000033143)	ENSMFAG00000047628	NACC1 (ENSMFAG00000036952)	STX10 (ENSMFAG00000039740)	CACNA1A (ENSMFAG00000040043)	ENSMFAG00000053174	ENSMFAG00000064308	ENSMFAG00000055985	YJU2B (ENSMFAG00000038616)	MRI1 (ENSMFAG00000044250)	ZSWIM4 (ENSMFAG00000041230)	NANOS3 (ENSMFAG00000040009)	BRME1 (ENSMFAG00000036981)	CC2D1A (ENSMFAG00000043969)
Rhesus	MODERN SPECIES	10	BEST2 (ENSMMUG00000063236)	HOOK2 (ENSMMUG00000005686)	JUNB (ENSMMUG00000005688)	PRDX2 (ENSMMUG00000005689)	RNASEH2A (ENSMMUG00000045010)	RTBDN (ENSMMUG00000007322)	MAST1 (ENSMMUG00000008740)	DNASE2 (ENSMMUG00000028866)	KLF1 (ENSMMUG00000011230)	GCDH (ENSMMUG00000007043)	FARSA (ENSMMUG00000004390)	CALR (ENSMMUG00000004392)	RAD23A (ENSMMUG00000004393)	GADD45GIP1 (ENSMMUG00000042251)	DAND5 (ENSMMUG00000063314)	NFIX (ENSMMUG00000019292) ##22	LYL1 (ENSMMUG00000001166)	TRMT1 (ENSMMUG00000001167)	NACC1 (ENSMMUG00000017971)	STX10 (ENSMMUG00000011427)	CACNA1A (ENSMMUG00000003555)	ENSMMUG00000054395	ENSMMUG00000053476	ENSMMUG00000063226	MRI1 (ENSMMUG00000018068)	ZSWIM4 (ENSMMUG00000017645)	NANOS3 (ENSMMUG00000049716)	ENSMMUG00000049316	BRME1 (ENSMMUG00000008317)	CC2D1A (ENSMMUG00000008320)	PODNL1 (ENSMMUG00000008324)
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01100000266868	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Olive baboon	MODERN SPECIES	12	HOOK2 (ENSPANG00000014672)	JUNB (ENSPANG00000018727)	PRDX2 (ENSPANG00000010732)	THSD8 (ENSPANG00000032212)	RNASEH2A (ENSPANG00000034495)	RTBDN (ENSPANG00000015629)	MAST1 (ENSPANG00000015630)	DNASE2 (ENSPANG00000049574)	KLF1 (ENSPANG00000033071)	GCDH (ENSPANG00000007728)	SYCE2 (ENSPANG00000001632)	FARSA (ENSPANG00000010978)	CALR (ENSPANG00000005597)	RAD23A (ENSPANG00000014671)	GADD45GIP1 (ENSPANG00000009045)	NFIX (ENSPANG00000018992) ##22	LYL1 (ENSPANG00000014670)	TRMT1 (ENSPANG00000009247)	NACC1 (ENSPANG00000004447)	STX10 (ENSPANG00000012122)	IER2 (ENSPANG00000014006)	CACNA1A (ENSPANG00000009077)	ENSPANG00000044374	YJU2B (ENSPANG00000009961)	MRI1 (ENSPANG00000010977)	C19orf53 (ENSPANG00000038691)	ZSWIM4 (ENSPANG00000018289)	ENSPANG00000048009	NANOS3 (ENSPANG00000015037)	BRME1 (ENSPANG00000017976)	CC2D1A (ENSPANG00000019934)
Cercopithecinae_d	ANCESTRAL SPECIES	8	ENSGT00940000161195	ENSGT00940000155828.o.b	ENSGT00870000137755	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00530000063926.b	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01100000266868	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059
Drill	MODERN SPECIES	1150	PRDX2 (ENSMLEG00000007227)	THSD8 (ENSMLEG00000031315)	RNASEH2A (ENSMLEG00000043654)	RTBDN (ENSMLEG00000029058)	ENSMLEG00000014873	DNASE2 (ENSMLEG00000042329)	KLF1 (ENSMLEG00000029486)	ENSMLEG00000022275	GCDH (ENSMLEG00000034975)	SYCE2 (ENSMLEG00000040081)	FARSA (ENSMLEG00000029157)	CALR (ENSMLEG00000043015)	RAD23A (ENSMLEG00000025874)	GADD45GIP1 (ENSMLEG00000026252)	DAND5 (ENSMLEG00000039027)	NFIX (ENSMLEG00000009460) ##22	LYL1 (ENSMLEG00000040101)	TRMT1 (ENSMLEG00000016142)	NACC1 (ENSMLEG00000030829)	STX10 (ENSMLEG00000043432)	IER2 (ENSMLEG00000019860)	CACNA1A (ENSMLEG00000040228)
Sooty mangabey	MODERN SPECIES	347	HOOK2 (ENSCATG00000035441)	JUNB (ENSCATG00000021976)	PRDX2 (ENSCATG00000030663)	RNASEH2A (ENSCATG00000029609)	RTBDN (ENSCATG00000043279)	MAST1 (ENSCATG00000034930)	DNASE2 (ENSCATG00000039766)	KLF1 (ENSCATG00000043665)	GCDH (ENSCATG00000027594)	SYCE2 (ENSCATG00000041610)	ENSCATG00000024201	CALR (ENSCATG00000033446)	RAD23A (ENSCATG00000004423)	GADD45GIP1 (ENSCATG00000030476)	DAND5 (ENSCATG00000043902)	NFIX (ENSCATG00000043066) ##22	LYL1 (ENSCATG00000044487)	TRMT1 (ENSCATG00000039850)	NACC1 (ENSCATG00000035045)	STX10 (ENSCATG00000030837)	IER2 (ENSCATG00000021750)	CACNA1A (ENSCATG00000031790)	ENSCATG00000029680	YJU2B (ENSCATG00000031922)	MRI1 (ENSCATG00000029747)	C19orf53 (ENSCATG00000035863)	ZSWIM4 (ENSCATG00000024862)	NANOS3 (ENSCATG00000034885)	BRME1 (ENSCATG00000029619)	CC2D1A (ENSCATG00000040032)	PODNL1 (ENSCATG00000025145)
Sauria	ANCESTRAL SPECIES	22	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201
Lepidosauria	ANCESTRAL SPECIES	44		ENSGT00940000157700	ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT01030000234965	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000166140	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT01030000234857	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145
tuatara	MODERN SPECIES	1488												MAST1 (ENSSPUG00000012388)	ENSSPUG00000012425	DNASE2 (ENSSPUG00000012441)	GADD45GIP1 (ENSSPUG00000012461)	NFIX (ENSSPUG00000012471) ##22	ENSSPUG00000012493	FARSA (ENSSPUG00000012509)	ENSSPUG00000012528	GCDH (ENSSPUG00000012544)	RAD23A (ENSSPUG00000012568)	ENSSPUG00000012580
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000165414	ENSGT00950000183047.c.a	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00940000156887	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000166140	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00940000154063.C.a.b	ENSGT00940000165414	ENSGT00950000183047.c.a	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00940000156887	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000166140	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201
Lizard	MODERN SPECIES	1	PODNL1 (ENSACAG00000015752)	CC2D1A (ENSACAG00000015805)	ENSACAG00000038237	ENSACAG00000017334	ENSACAG00000028697	ENSACAG00000014786	ENSACAG00000039335	ENSACAG00000040519	FARSA (ENSACAG00000017166)	ENSACAG00000017141	ENSACAG00000041002	ENSACAG00000017106	ENSACAG00000017092	GADD45GIP1 (ENSACAG00000017088)	ENSACAG00000041770	NFIX (ENSACAG00000017054) ##22	ENSACAG00000044312	ACP5 (ENSACAG00000017040)	ELOF1 (ENSACAG00000036566)	CNN1 (ENSACAG00000017001)	ENSACAG00000035421	ECSIT (ENSACAG00000016981)	ZNF653 (ENSACAG00000016965)	ELAVL3 (ENSACAG00000016958)	ENSACAG00000039293	PRKCSH (ENSACAG00000016939)	ODAD3 (ENSACAG00000016925)	ENSACAG00000035495	ENSACAG00000036167	RGL3 (ENSACAG00000016903)	SWSAP1 (ENSACAG00000016884)
Elapidae	ANCESTRAL SPECIES	21	ENSGT00940000154063.C.a.b.pb	ENSGT00940000165414	ENSGT00950000183047.c.a	ENSGT00940000154130.a.a.a	ENSGT00940000159125.d	ENSGT00940000156887	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000166140	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201
Indian cobra	MODERN SPECIES	1	ENSNNAG00000008828	ENSNNAG00000008895	TRIP10 (ENSNNAG00000009000)	SH2D3A (ENSNNAG00000009558)	VAV1 (ENSNNAG00000009811)	SMARCA4 (ENSNNAG00000011180)	DNASE2 (ENSNNAG00000011869)	KLF1 (ENSNNAG00000011895)	GCDH (ENSNNAG00000011936)	FARSA (ENSNNAG00000012012)	ENSNNAG00000012039	ENSNNAG00000012059	ENSNNAG00000012105	ENSNNAG00000012176	GADD45GIP1 (ENSNNAG00000012462)	NFIX (ENSNNAG00000012484) ##22	ENSNNAG00000012508	ACP5 (ENSNNAG00000012526)	ELOF1 (ENSNNAG00000012563)	CNN1 (ENSNNAG00000012574)	ECSIT (ENSNNAG00000012590)	ZNF653 (ENSNNAG00000012609)	ELAVL3 (ENSNNAG00000012673)	PRKCSH (ENSNNAG00000012883)	ODAD3 (ENSNNAG00000012962)	RGL3 (ENSNNAG00000012994)	EPOR (ENSNNAG00000013044)	SWSAP1 (ENSNNAG00000013068)	PLPPR2 (ENSNNAG00000013090)	CCDC159 (ENSNNAG00000013098)	RAB3D (ENSNNAG00000013132)
Elapidae_a	ANCESTRAL SPECIES	77		ENSGT00940000165414	ENSGT00950000183047.c.a	ENSGT00940000154130.a.a.a	ENSGT00940000159125.d	ENSGT00940000156887	ENSGT00390000002634.a	ENSGT00940000169355	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000166140	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389.k	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201
Acanthophiinae	ANCESTRAL SPECIES	89		ENSGT00940000165414	ENSGT00950000183047.c.a	ENSGT00940000154130.a.a.a	ENSGT00940000159125.d	ENSGT00940000156887	ENSGT00390000002634.a	ENSGT00940000169355	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000166140	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389.k	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000016298.a
Mainland tiger snake	MODERN SPECIES	119		ENSNSUG00000015255	TRIP10 (ENSNSUG00000015302)	ENSNSUG00000015440	VAV1 (ENSNSUG00000015441)	SMARCA4 (ENSNSUG00000015471)	DNASE2 (ENSNSUG00000015784)	ENSNSUG00000015791	GCDH (ENSNSUG00000015792)	ENSNSUG00000015794	FARSA (ENSNSUG00000015797)	CALR (ENSNSUG00000015902)	RAD23A (ENSNSUG00000015965)	ENSNSUG00000015981	GADD45GIP1 (ENSNSUG00000015982)	NFIX (ENSNSUG00000015984) ##22	ENSNSUG00000015986	ACP5 (ENSNSUG00000015987)	ELOF1 (ENSNSUG00000015988)	CNN1 (ENSNSUG00000015989)	ECSIT (ENSNSUG00000015991)	ENSNSUG00000015992	ZNF653 (ENSNSUG00000015993)	ELAVL3 (ENSNSUG00000015994)	PRKCSH (ENSNSUG00000015999)	ODAD3 (ENSNSUG00000016002)	ENSNSUG00000016029	ENSNSUG00000016030	EPOR (ENSNSUG00000016031)	ENSNSUG00000016032	PLPPR2 (ENSNSUG00000016034)
Eastern brown snake	MODERN SPECIES	87		ENSPTXG00000019073	TRIP10 (ENSPTXG00000019072)	ENSPTXG00000019071	VAV1 (ENSPTXG00000018919)	SMARCA4 (ENSPTXG00000018917)	DNASE2 (ENSPTXG00000018916)	ENSPTXG00000018914	GCDH (ENSPTXG00000018913)	ENSPTXG00000018912	FARSA (ENSPTXG00000018910)	CALR (ENSPTXG00000018909)	RAD23A (ENSPTXG00000018907)	ENSPTXG00000018904	GADD45GIP1 (ENSPTXG00000018902)	NFIX (ENSPTXG00000018900) ##22	ENSPTXG00000018899	ACP5 (ENSPTXG00000018898)	ELOF1 (ENSPTXG00000018897)	CNN1 (ENSPTXG00000018896)	ENSPTXG00000018895	ECSIT (ENSPTXG00000018894)	ZNF653 (ENSPTXG00000018893)	ELAVL3 (ENSPTXG00000018892)	PRKCSH (ENSPTXG00000018890)	ODAD3 (ENSPTXG00000018886)	RGL3 (ENSPTXG00000018882)	EPOR (ENSPTXG00000018880)	SWSAP1 (ENSPTXG00000018879)	PLPPR2 (ENSPTXG00000018877)	TMEM205 (ENSPTXG00000018876)
Blue-lipped sea krait	MODERN SPECIES	6841																NFIX (ENSLLTG00000011976) ##22
Laterata	ANCESTRAL SPECIES	7	ENSGT00940000165414	ENSGT00950000183047.c.a	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00940000156887	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00860000135639	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000166140	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00940000157552
Common wall lizard	MODERN SPECIES	8	ENSPMRG00000023739	TRIP10 (ENSPMRG00000023734)	SH2D3A (ENSPMRG00000023731)	VAV1 (ENSPMRG00000023724)	SMARCA4 (ENSPMRG00000023717)	DNASE2 (ENSPMRG00000023712)	KLF1 (ENSPMRG00000023711)	GCDH (ENSPMRG00000023707)	SYCE2 (ENSPMRG00000023704)	FARSA (ENSPMRG00000023703)	CALR (ENSPMRG00000023698)	RAD23A (ENSPMRG00000023693)	ENSPMRG00000023687	GADD45GIP1 (ENSPMRG00000023684)	ENSPMRG00000023682	NFIX (ENSPMRG00000023676) ##22	ENSPMRG00000023671	ACP5 (ENSPMRG00000023667)	ELOF1 (ENSPMRG00000023663)	CNN1 (ENSPMRG00000023659)	ENSPMRG00000023657	ECSIT (ENSPMRG00000023655)	ENSPMRG00000023654	ELAVL3 (ENSPMRG00000023639)	PRKCSH (ENSPMRG00000023623)	ODAD3 (ENSPMRG00000023616)	RGL3 (ENSPMRG00000023610)	EPOR (ENSPMRG00000023605)	SWSAP1 (ENSPMRG00000023604)	PLPPR2 (ENSPMRG00000023599)	CCDC159 (ENSPMRG00000023594)
Argentine black and white tegu	MODERN SPECIES	45	ENSSMRG00000000635	ENSSMRG00000000650	TRIP10 (ENSSMRG00000000661)	SH2D3A (ENSSMRG00000000696)	VAV1 (ENSSMRG00000000741)	SMARCA4 (ENSSMRG00000002694)	DNASE2 (ENSSMRG00000002707)	KLF1 (ENSSMRG00000002710)	GCDH (ENSSMRG00000002799)	SYCE2 (ENSSMRG00000002800)	FARSA (ENSSMRG00000002806)	CALR (ENSSMRG00000002807)	RAD23A (ENSSMRG00000002809)	ENSSMRG00000002812	GADD45GIP1 (ENSSMRG00000002818)	NFIX (ENSSMRG00000002884) ##22	ENSSMRG00000002919	ACP5 (ENSSMRG00000002926)	ELOF1 (ENSSMRG00000002942)	CNN1 (ENSSMRG00000002953)	ENSSMRG00000002957	ECSIT (ENSSMRG00000002965)	ZNF653 (ENSSMRG00000002966)	ELAVL3 (ENSSMRG00000003004)	PRKCSH (ENSSMRG00000003008)	ENSSMRG00000003025	RGL3 (ENSSMRG00000003033)	EPOR (ENSSMRG00000003055)	SWSAP1 (ENSSMRG00000003060)	PLPPR2 (ENSSMRG00000003063)	RAB3D (ENSSMRG00000003115)
Archelosauria	ANCESTRAL SPECIES	28	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201
Cryptodira	ANCESTRAL SPECIES	39	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201
Testudinoidea	ANCESTRAL SPECIES	36	ENSGT00940000158629	ENSGT00950000183144.B	ENSGT00940000157700	ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00940000163154.B.e.b.d.a	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a.b	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201
Emydidae	ANCESTRAL SPECIES	48	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00390000010768	ENSGT00940000161856	ENSGT00940000158116	ENSGT00390000004872	ENSGT00940000163154.B.e.b.d.a	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a.b	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00960000189790	ENSGT00390000016298.a	ENSGT00940000157552	ENSGT00940000159428	ENSGT00950000183101.a.b.a	ENSGT00940000154394.a
painted turtle	MODERN SPECIES	2403	BEST2 (ENSCPBG00000023904)	HOOK2 (ENSCPBG00000023905)	JUNB (ENSCPBG00000023907)	PRDX2 (ENSCPBG00000023908)	RNASEH2A (ENSCPBG00000023909)	ENSCPBG00000023910	MAST1 (ENSCPBG00000023911)	GCDH (ENSCPBG00000023912)	SYCE2 (ENSCPBG00000023913)	ENSCPBG00000023914	FARSA (ENSCPBG00000023915)	ENSCPBG00000023916	RAD23A (ENSCPBG00000023930)	ENSCPBG00000023933	GADD45GIP1 (ENSCPBG00000023940)	NFIX (ENSCPBG00000023946) ##22	ACP5 (ENSCPBG00000023952)	ELOF1 (ENSCPBG00000023953)	CNN1 (ENSCPBG00000023957)	ENSCPBG00000023959	ECSIT (ENSCPBG00000023960)	ZNF653 (ENSCPBG00000023963)	ELAVL3 (ENSCPBG00000023982)	ENSCPBG00000023996	ENSCPBG00000024032	ENSCPBG00000024033	ENSCPBG00000024035	ENSCPBG00000024038	COX6B1 (ENSCPBG00000024039)	ENSCPBG00000024042	ENSCPBG00000024044
Three-toed box turtle	MODERN SPECIES	382	ENSTMTG00000018682	GET3 (ENSTMTG00000018660)	BEST2 (ENSTMTG00000018625)	HOOK2 (ENSTMTG00000018274)	PRDX2 (ENSTMTG00000018231)	RNASEH2A (ENSTMTG00000018210)	ENSTMTG00000018201	KLF1 (ENSTMTG00000018195)	GCDH (ENSTMTG00000018178)	ENSTMTG00000018174	SYCE2 (ENSTMTG00000018152)	FARSA (ENSTMTG00000018129)	CALR (ENSTMTG00000018116)	RAD23A (ENSTMTG00000018106)	GADD45GIP1 (ENSTMTG00000018100)	NFIX (ENSTMTG00000018091) ##22	ACP5 (ENSTMTG00000018088)	ELOF1 (ENSTMTG00000018068)	CNN1 (ENSTMTG00000018057)	ENSTMTG00000018051	ELAVL3 (ENSTMTG00000017877)	PRKCSH (ENSTMTG00000017840)	ODAD3 (ENSTMTG00000017813)	ENSTMTG00000017808	RAB3D (ENSTMTG00000017796)	SLC25A23 (ENSTMTG00000017665)	ENSTMTG00000017634	ENSTMTG00000017612	ENSTMTG00000017598	TNFSF14 (ENSTMTG00000017581)	ENSTMTG00000017545
Testudinidae	ANCESTRAL SPECIES	54				ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00390000002634.a	ENSGT00940000161856	ENSGT00940000158116	ENSGT00950000185979	ENSGT00940000163154.B.e.b.d.a	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a.b	ENSGT00390000012078.a.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00940000162404	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT01010000222313.A.b.a.c	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389	ENSGT00510000047770.c.a	ENSGT00940000153116.C.b	ENSGT00940000161935	ENSGT00940000160315	ENSGT00390000007170	ENSGT00940000158145	ENSGT00390000008201
Abingdon island giant tortoise	MODERN SPECIES	99				ENSCABG00000002386	ENSCABG00000002387	DNASE2 (ENSCABG00000002388)	KLF1 (ENSCABG00000002389)	GCDH (ENSCABG00000002391)	ENSCABG00000002393	ENSCABG00000002396	FARSA (ENSCABG00000002403)	CALR (ENSCABG00000002592)	RAD23A (ENSCABG00000002988)	ENSCABG00000002999	GADD45GIP1 (ENSCABG00000003011)	NFIX (ENSCABG00000003014) ##22	ACP5 (ENSCABG00000003022)	ELOF1 (ENSCABG00000003032)	CNN1 (ENSCABG00000003041)	ENSCABG00000003049	ECSIT (ENSCABG00000003090)	ZNF653 (ENSCABG00000003093)	ELAVL3 (ENSCABG00000003103)	PRKCSH (ENSCABG00000003210)	ENSCABG00000003213	ENSCABG00000003217	EPOR (ENSCABG00000003220)	ENSCABG00000003222	ENSCABG00000003225	TMEM205 (ENSCABG00000003230)	ENSCABG00000003233
Goode s thornscrub tortoise	MODERN SPECIES	152	PRDX2 (ENSGEVG00005019161)	RNASEH2A (ENSGEVG00005019166)	ENSGEVG00005019178	ENSGEVG00005019190	ENSGEVG00005019202	ENSGEVG00005019218	DNASE2 (ENSGEVG00005019228)	KLF1 (ENSGEVG00005019235)	GCDH (ENSGEVG00005019243)	ENSGEVG00005019250	FARSA (ENSGEVG00005019260)	CALR (ENSGEVG00005019273)	RAD23A (ENSGEVG00005019280)	ENSGEVG00005019296	GADD45GIP1 (ENSGEVG00005019331)	NFIX (ENSGEVG00005019340) ##22	LYL1 (ENSGEVG00005019355)	ACP5 (ENSGEVG00005019364)	ELOF1 (ENSGEVG00005019371)	CNN1 (ENSGEVG00005019391)	ENSGEVG00005019399	ECSIT (ENSGEVG00005019407)	ZNF653 (ENSGEVG00005019421)	ELAVL3 (ENSGEVG00005019440)	PRKCSH (ENSGEVG00005019511)	ODAD3 (ENSGEVG00005019517)	RGL3 (ENSGEVG00005013372)	EPOR (ENSGEVG00005013419)	SWSAP1 (ENSGEVG00005013469)	PLPPR2 (ENSGEVG00005013540)	CCDC159 (ENSGEVG00005013994)
Chinese turtle	MODERN SPECIES	181	ENSPSIG00000012015	GET3 (ENSPSIG00000012030)	ENSPSIG00000000707	JUNB (ENSPSIG00000000714)	PRDX2 (ENSPSIG00000012036)	RNASEH2A (ENSPSIG00000012039)	ENSPSIG00000012044	ENSPSIG00000012165	MAST1 (ENSPSIG00000012191)	GCDH (ENSPSIG00000012491)	SYCE2 (ENSPSIG00000012696)	FARSA (ENSPSIG00000012701)	ENSPSIG00000012928	RAD23A (ENSPSIG00000013229)	ENSPSIG00000013785	NFIX (ENSPSIG00000013902) ##22
Archosauria	ANCESTRAL SPECIES	34	ENSGT00390000006806	ENSGT00940000156708.a.a	ENSGT00390000012267	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000160152	ENSGT00390000010768	ENSGT00940000157700	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389
Aves	ANCESTRAL SPECIES	34	ENSGT00390000006806	ENSGT00940000156708.a.a	ENSGT00390000012267	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000160152	ENSGT00390000010768	ENSGT00940000157700	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b	ENSGT00390000013719	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT00390000005147	ENSGT00940000160257	ENSGT00940000160389
Neognathae	ANCESTRAL SPECIES	34	ENSGT00390000006806	ENSGT00940000156708.a.a	ENSGT00390000012267	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000160152	ENSGT00390000010768	ENSGT00940000157700	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b.s.a	ENSGT00390000013719	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT00390000005147	ENSGT00940000160257.j	ENSGT00940000160257.i	ENSGT00940000160389
Galloanserae	ANCESTRAL SPECIES	51	ENSGT00390000006806	ENSGT00940000156708.a.a	ENSGT00390000003817	ENSGT00390000012267	ENSGT00940000161361	ENSGT00940000160152	ENSGT00390000010768	ENSGT00940000157700	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b.s.a	ENSGT00390000013719	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00390000016735	ENSGT00390000000053
Phasianidae	ANCESTRAL SPECIES	40	ENSGT00390000006806	ENSGT00940000156708.a.a	ENSGT00390000003817	ENSGT00390000012267	ENSGT00940000161361	ENSGT00940000160152	ENSGT00390000010768	ENSGT00940000157700	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b.s.a	ENSGT00390000013719	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00390000016735	ENSGT00390000000053
Phasianidae_b	ANCESTRAL SPECIES	58									ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b.s.a	ENSGT00390000013719	ENSGT00950000185200	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00390000016735	ENSGT00390000000053
Turkey	MODERN SPECIES	1204														FARSA (ENSMGAG00000002458)	CALR (ENSMGAG00000002470)	NFIX (ENSMGAG00000002720) ##22
Chicken	MODERN SPECIES	23			ENSGALG00010002985	ENSGALG00010002919	PGLS (ENSGALG00010002917)	SLC27A1 (ENSGALG00010002914)	NXNL1 (ENSGALG00010002913)	GMIP (ENSGALG00010003439)	GCDH (ENSGALG00010003403)	SYCE2 (ENSGALG00010003374)	FARSA (ENSGALG00010003352)	CALR (ENSGALG00010003305)	RAD23A (ENSGALG00010003299)	GADD45GIP1 (ENSGALG00010003292)	ENSGALG00010003279	NFIX (ENSGALG00010003273) ##22	ACP5 (ENSGALG00010003260)	ELOF1 (ENSGALG00010003251)	S1PR2 (ENSGALG00010002908)	DNMT1 (ENSGALG00010002837)	EIF3G (ENSGALG00010002781)	PPAN (ENSGALG00010002762)	RDH8 (ENSGALG00010002733)	OLFM2 (ENSGALG00010002713)	PIN1 (ENSGALG00010002703)	UBL5 (ENSGALG00010002682)	FBXL12 (ENSGALG00010002658)	ENSGALG00010002629	ENSGALG00010002606	ENSGALG00010002597	ATP13A1 (ENSGALG00010002581)
Japanese quail	MODERN SPECIES	64	WDR83 (ENSCJPG00005003460)	FBXW9 (ENSCJPG00005003459)	TNPO2 (ENSCJPG00005003457)	GET3 (ENSCJPG00005003456)	TRIR (ENSCJPG00005003454)	ENSCJPG00005003453	HOOK2 (ENSCJPG00005003452)	RNASEH2A (ENSCJPG00005003451)	MAST1 (ENSCJPG00005003446)	GCDH (ENSCJPG00005003445)	SYCE2 (ENSCJPG00005003444)	FARSA (ENSCJPG00005003443)	CALR (ENSCJPG00005003442)	RAD23A (ENSCJPG00005003441)	ENSCJPG00005003440	NFIX (ENSCJPG00005003439) ##22
Anatidae	ANCESTRAL SPECIES	261																ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00950000185200
Duck	MODERN SPECIES	3655																NFIX (ENSAPLG00000030894) ##22	ENSAPLG00000028448
Neognathae_b	ANCESTRAL SPECIES	36	ENSGT00390000006806	ENSGT00940000156708.a.a	ENSGT00390000012267	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000160152	ENSGT00390000010768	ENSGT00940000157700	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b.s.a	ENSGT00390000012078.a.b.s.b	ENSGT00960000191851	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT00390000005147	ENSGT00940000160257.j	ENSGT00940000160257.i	ENSGT00940000160389
Neognathae_c	ANCESTRAL SPECIES	41	ENSGT00390000008063	ENSGT00390000006806	ENSGT00940000156708.a.a	ENSGT00390000012267	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000160152	ENSGT00390000010768	ENSGT00940000157700	ENSGT00940000158116	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b.s.a	ENSGT00390000012078.a.b.s.b	ENSGT00960000191851	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT00390000005147	ENSGT00940000160257.i	ENSGT00940000160389
Golden eagle	MODERN SPECIES	45	DHPS (ENSACCG00020013435)	FBXW9 (ENSACCG00020013374)	TNPO2 (ENSACCG00020013317)	TRIR (ENSACCG00020013292)	GET3 (ENSACCG00020013277)	ENSACCG00020013261	HOOK2 (ENSACCG00020013226)	RNASEH2A (ENSACCG00020013188)	MAST1 (ENSACCG00020012900)	GCDH (ENSACCG00020012495)	FARSA (ENSACCG00020012442)	CALR (ENSACCG00020012401)	ENSACCG00020012367	ENSACCG00020012344	ENSACCG00020012313	NFIX (ENSACCG00020012251) ##22	ACP5 (ENSACCG00020012114)	ELOF1 (ENSACCG00020011902)	CNN1 (ENSACCG00020011842)	ECSIT (ENSACCG00020014443)	ZNF653 (ENSACCG00020014427)	ELAVL3 (ENSACCG00020014411)	ENSACCG00020014373	ENSACCG00020014355
Kakapo	MODERN SPECIES	73	ILF3 (ENSSHBG00005017188)	ENSSHBG00005017200	ENSSHBG00005017208	ENSSHBG00005017213	AP1M2 (ENSSHBG00005017216)	ENSSHBG00005017222	AKAP8 (ENSSHBG00005017232)	AKAP8L (ENSSHBG00005017237)	WIZ (ENSSHBG00005017243)	ENSSHBG00005017252	ENSSHBG00005017257	CALR (ENSSHBG00005017266)	ENSSHBG00005017267	ENSSHBG00005017270	ENSSHBG00005017272	NFIX (ENSSHBG00005017275) ##22	ACP5 (ENSSHBG00005017284)	ELOF1 (ENSSHBG00005017342)	CNN1 (ENSSHBG00005017346)	ECSIT (ENSSHBG00005017349)	EPOR (ENSSHBG00005017367)
Passeriformes	ANCESTRAL SPECIES	53							ENSGT00390000010768	ENSGT00940000157700	ENSGT00940000158116	ENSGT00390000004872	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b.s.a	ENSGT00390000012078.a.b.s.b	ENSGT00960000191851	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT00390000005147	ENSGT00940000160257.j	ENSGT00940000160257.i	ENSGT00940000160389
Passeriformes_d	ANCESTRAL SPECIES	49							ENSGT00390000010768	ENSGT00940000157700	ENSGT00940000158116	ENSGT00950000185979	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b.s.a	ENSGT00390000012078.a.b.s.b	ENSGT00960000191851	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT00390000005147	ENSGT00940000160257.j	ENSGT00940000160257.i	ENSGT00940000160389
Flycatcher	MODERN SPECIES	192																ENSFALG00000023651 ##22
Passeriformes_g	ANCESTRAL SPECIES	62							ENSGT00390000010768	ENSGT00940000157700	ENSGT00940000158116	ENSGT00950000185979	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b.s.a	ENSGT00390000012078.a.b.s.b	ENSGT00960000191851	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT00390000005147	ENSGT00940000160257.j	ENSGT00940000160257.i	ENSGT00940000160389
Passeroidea	ANCESTRAL SPECIES	65							ENSGT00390000010768	ENSGT00940000157700	ENSGT00940000158116	ENSGT00950000185979	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00390000012078.a.b.s.a	ENSGT00390000012078.a.b.s.b	ENSGT00960000191851	ENSGT00950000182916.a.b.a.a.a.b.b ##22	ENSGT00390000016735	ENSGT00390000000053	ENSGT00940000159680	ENSGT00390000005147	ENSGT00940000160257.j	ENSGT00940000160257.i	ENSGT00940000160389
Zebra finch	MODERN SPECIES	24	ENSTGUG00000013676	ENSTGUG00000025472	ENSTGUG00000022011	ENSTGUG00000015262	ENSTGUG00000023159	ENSTGUG00000022749	ENSTGUG00000019079	ENSTGUG00000026274	ENSTGUG00000019248	ENSTGUG00000023396	ENSTGUG00000026111	CALR (ENSTGUG00000014982)	ENSTGUG00000028645	ENSTGUG00000019678	ENSTGUG00000020610	NFIX (ENSTGUG00000020664) ##22	ACP5 (ENSTGUG00000021534)	ELOF1 (ENSTGUG00000024494)	CNN1 (ENSTGUG00000020817)	ENSTGUG00000029357	ENSTGUG00000021484	ENSTGUG00000026577	ENSTGUG00000028230	ELAVL3 (ENSTGUG00000021529)	CDC37 (ENSTGUG00000022693)	TYK2 (ENSTGUG00000024257)	ENSTGUG00000019445	RAVER1 (ENSTGUG00000020121)	FDX2 (ENSTGUG00000022780)	ENSTGUG00000019185	PBX4 (ENSTGUG00000026483)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	152																ENSEBUG00000010603 ##22	ENSEBUG00000003329	ENSEBUG00000014122	TMEM38A (ENSEBUG00000016575)	ENSEBUG00000007238	ENSEBUG00000007668	ENSEBUG00000016698	ENSEBUG00000001516	ENSEBUG00000004719	trabd2a (ENSEBUG00000008212)
Hagfish	MODERN SPECIES	792															ENSEBUG00000009324	ENSEBUG00000009022 ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Mammalia	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Theria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Carnivora	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Felidae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Panthera	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Panthera_a	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
leopard	MODERN SPECIES	529																ENSPPRG00000011050 ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Glires	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Rodentia	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Muroidea	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Murinae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Mus	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Mus_A	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Mus_B	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Mus_C	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Steppe mouse	MODERN SPECIES	922																ENSMSIG00000007838 ##22	ENSMSIG00000007857
Primates	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Haplorrhini	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Simiiformes	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.a.b ##22
Mas night monkey	MODERN SPECIES	324																ENSANAG00000035669 ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b ##22
Gnathostomata	ANCESTRAL SPECIES	294								ENSGT00390000000510	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00530000063926	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00940000155586.A
Euteleostomi	ANCESTRAL SPECIES	88		ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000154737.d	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a
Sarcopterygii	ANCESTRAL SPECIES	81	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a
Coelacanth	MODERN SPECIES	776															ENSLACG00000003020	NFIB (ENSLACG00000009598) ##22
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a
Anura	ANCESTRAL SPECIES	29										ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640
Frog	MODERN SPECIES		ENSXETG00000043398	ENSXETG00000048093	crygdl2.2 (ENSXETG00000041676)	ENSXETG00000046145	lingo2 (ENSXETG00000043850)	ENSXETG00000034782	ENSXETG00000047407	ENSXETG00000046774	psip1 (ENSXETG00000003303)	snapc3 (ENSXETG00000003302)	ttc39b (ENSXETG00000003301)	frem1 (ENSXETG00000003300)	cer1 (ENSXETG00000038419)	zdhhc21 (ENSXETG00000026463)	ENSXETG00000049491	nfib (ENSXETG00000000835) ##22	mpdz (ENSXETG00000032182)	lurap1l (ENSXETG00000034475)	tyrp1 (ENSXETG00000012905)	ENSXETG00000044402	ptprd (ENSXETG00000011833)	kdm4c (ENSXETG00000000532)	gldc (ENSXETG00000000543)	uhrf2 (ENSXETG00000000567)	kiaa2026 (ENSXETG00000000574)	fxn (ENSXETG00000039175)	mlana (ENSXETG00000037374)	ermp1 (ENSXETG00000000577)	ric1 (ENSXETG00000000582)	pdcd1lg2 (ENSXETG00000040791)	ENSXETG00000036720
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000000034	ENSLLEG00000000026	ENSLLEG00000000019	ENSLLEG00000000014	ENSLLEG00000004166	ENSLLEG00000004162	ENSLLEG00000004161	ENSLLEG00000004160	ENSLLEG00000004156	SNAPC3 (ENSLLEG00000004152)	TTC39B (ENSLLEG00000004066)	ENSLLEG00000004030	FREM1 (ENSLLEG00000003985)	ENSLLEG00000003954	ZDHHC21 (ENSLLEG00000003940)	NFIB (ENSLLEG00000003851) ##22	ENSLLEG00000003806	ENSLLEG00000003802	ENSLLEG00000003713	LURAP1L (ENSLLEG00000003710)	ENSLLEG00000003706	TYRP1 (ENSLLEG00000003692)	ENSLLEG00000003688	ENSLLEG00000003681	ENSLLEG00000003676	ENSLLEG00000003669	ENSLLEG00000003662	ENSLLEG00000003657	ENSLLEG00000003648	ENSLLEG00000003637	PTPRD (ENSLLEG00000002633)
Amniota	ANCESTRAL SPECIES	4	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00950000185213	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434
Sauria	ANCESTRAL SPECIES	5	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT01030000235336	ENSGT01030000235123	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT01030000235336	ENSGT01030000235123	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375
Archosauria	ANCESTRAL SPECIES	31	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT01030000235336	ENSGT01030000235123	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375
Australian saltwater crocodile	MODERN SPECIES	67	DENND4C (ENSCPRG00005000460)	PLIN2 (ENSCPRG00005000506)	HAUS6 (ENSCPRG00005000520)	SAXO1 (ENSCPRG00005000531)	ADAMTSL1 (ENSCPRG00005000579)	SH3GL2 (ENSCPRG00005000664)	CNTLN (ENSCPRG00005000737)	BNC2 (ENSCPRG00005000801)	CCDC171 (ENSCPRG00005000836)	PSIP1 (ENSCPRG00005000896)	SNAPC3 (ENSCPRG00005001022)	TTC39B (ENSCPRG00005001076)	FREM1 (ENSCPRG00005001239)	CER1 (ENSCPRG00005001332)	ZDHHC21 (ENSCPRG00005001339)	NFIB (ENSCPRG00005001399) ##22	MPDZ (ENSCPRG00005001670)	LURAP1L (ENSCPRG00005003737)	TYRP1 (ENSCPRG00005003740)	PTPRD (ENSCPRG00005003783)	KDM4C (ENSCPRG00005003854)	GLDC (ENSCPRG00005003953)	UHRF2 (ENSCPRG00005004283)	KIAA2026 (ENSCPRG00005004297)	ERMP1 (ENSCPRG00005004304)	RIC1 (ENSCPRG00005004338)	PDCD1LG2 (ENSCPRG00005004350)	ENSCPRG00005004356	PLGRKT (ENSCPRG00005004366)	ENSCPRG00005004371	JAK2 (ENSCPRG00005004373)
Aves	DUPLICATION
Aves	DUPLICATION
Aves	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b.a.a ##22
African ostrich	MODERN SPECIES	330															ENSSCUG00000005694	ENSSCUG00000005697 ##22	ENSSCUG00000005695 ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b.a.a ##22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b.a.a ##22
Phasianidae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b.a.a ##22
Japanese quail	MODERN SPECIES	699	ENSCJPG00005003260	ENSCJPG00005003265	PTPRD (ENSCJPG00005003278)	ENSCJPG00005003285	ENSCJPG00005003289	TYRP1 (ENSCJPG00005003297)	LURAP1L (ENSCJPG00005003298)	ENSCJPG00005003394	NFIB (ENSCJPG00005007386) ##22	CCDC171 (ENSCJPG00005007404)	PSIP1 (ENSCJPG00005007411)	TTC39B (ENSCJPG00005007562)	FREM1 (ENSCJPG00005007571)	CER1 (ENSCJPG00005007574)	ZDHHC21 (ENSCJPG00005007576)	ENSCJPG00005007601 ##22	BNC2 (ENSCJPG00005007620)	CNTLN (ENSCJPG00005007635)	SH3GL2 (ENSCJPG00005007638)	ADAMTSL1 (ENSCJPG00005007653)	SAXO1 (ENSCJPG00005007663)	HAUS6 (ENSCJPG00005007664)	PLIN2 (ENSCJPG00005007666)	DENND4C (ENSCJPG00005007667)	ENSCJPG00005007668	ACER2 (ENSCJPG00005007671)	SLC24A2 (ENSCJPG00005007673)	MLLT3 (ENSCJPG00005007680)	FOCAD (ENSCJPG00005007688)	HACD4 (ENSCJPG00005007707)	ENSCJPG00005007708
Aves	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b.a.b ##22
African ostrich	MODERN SPECIES	761	CDR2L (ENSSCUG00000011404)	MRPL58 (ENSSCUG00000011403)	ENSSCUG00000011402	ATP5PD (ENSSCUG00000011401)	ENSSCUG00000011400	ENSSCUG00000011397	SLC16A5 (ENSSCUG00000011396)	BNC2 (ENSSCUG00000011395)	CCDC171 (ENSSCUG00000011386)	ENSSCUG00000011376	SNAPC3 (ENSSCUG00000011373)	TTC39B (ENSSCUG00000011367)	FREM1 (ENSSCUG00000011356)	CER1 (ENSSCUG00000011351)	ZDHHC21 (ENSSCUG00000011348)	ENSSCUG00000011346 ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b.a.b ##22
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b.a.b ##22
Neognathae_c	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b.a.b ##22
Kakapo	MODERN SPECIES	19	SAXO1 (ENSSHBG00005020075)	ENSSHBG00005020078	ENSSHBG00005020084	SH3GL2 (ENSSHBG00005020088)	ENSSHBG00005020091	CNTLN (ENSSHBG00005020093)	BNC2 (ENSSHBG00005020107)	CCDC171 (ENSSHBG00005020113)	PSIP1 (ENSSHBG00005020122)	SNAPC3 (ENSSHBG00005020126)	TTC39B (ENSSHBG00005020149)	FREM1 (ENSSHBG00005020181)	CER1 (ENSSHBG00005020194)	ZDHHC21 (ENSSHBG00005020195)	NFIB (ENSSHBG00005000187) ##22	ENSSHBG00005000194 ##22	MPDZ (ENSSHBG00005003173)	LURAP1L (ENSSHBG00005017290)	TYRP1 (ENSSHBG00005017292)	PTPRD (ENSSHBG00005017319)	ENSSHBG00005017356	ENSSHBG00005017358	GLDC (ENSSHBG00005017361)	UHRF2 (ENSSHBG00005017370)	KIAA2026 (ENSSHBG00005017376)	MLANA (ENSSHBG00005017380)	ENSSHBG00005017383	ERMP1 (ENSSHBG00005017385)	RIC1 (ENSSHBG00005017400)	PDCD1LG2 (ENSSHBG00005017476)	ENSSHBG00005017481
Aves	ANCESTRAL SPECIES	45	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT01030000235336	ENSGT01030000235123	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	531																ENSSCUG00000004342 ##22	ENSSCUG00000004337	MPDZ (ENSSCUG00000004149)	TYRP1 (ENSSCUG00000004054)
African ostrich	MODERN SPECIES	330														ENSSCUG00000005694	ENSSCUG00000005697 ##22	ENSSCUG00000005695 ##22
Neognathae	ANCESTRAL SPECIES	12	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT01030000235336	ENSGT01030000235123	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375
Galloanserae	ANCESTRAL SPECIES	11	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a
Anatidae	ANCESTRAL SPECIES	103							ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804
Pink-footed goose	MODERN SPECIES	231													FREM1 (ENSABRG00000018044)	CER1 (ENSABRG00000018026)	ZDHHC21 (ENSABRG00000018017)	NFIB (ENSABRG00000018011) ##22	MPDZ (ENSABRG00000016173)	LURAP1L (ENSABRG00000016027)	TYRP1 (ENSABRG00000016017)
Duck	MODERN SPECIES	4281	KIAA2026 (ENSAPLG00000003748)	UHRF2 (ENSAPLG00000013042)	GLDC (ENSAPLG00000012359)	KDM4C (ENSAPLG00000012301)	ENSAPLG00000023506	PTPRD (ENSAPLG00000012170)	BNC2 (ENSAPLG00000008295)	ENSAPLG00000019687	CCDC171 (ENSAPLG00000011943)	PSIP1 (ENSAPLG00000011966)	SNAPC3 (ENSAPLG00000024309)	TTC39B (ENSAPLG00000012421)	FREM1 (ENSAPLG00000012801)	CER1 (ENSAPLG00000013182)	ZDHHC21 (ENSAPLG00000013190)	NFIB (ENSAPLG00000013233) ##22	ENSAPLG00000022322	ENSAPLG00000018925	MPDZ (ENSAPLG00000013686)	LURAP1L (ENSAPLG00000011742)	TYRP1 (ENSAPLG00000013453)	ENSAPLG00000020249	CNTLN (ENSAPLG00000007696)	SH3GL2 (ENSAPLG00000007190)	ENSAPLG00000006616	ENSAPLG00000025052	ENSAPLG00000006493	SAXO1 (ENSAPLG00000006403)	HAUS6 (ENSAPLG00000006057)	PLIN2 (ENSAPLG00000005745)	RPS6 (ENSAPLG00000004889)
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT00390000007924	ENSGT00940000154706	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b ##22	ENSGT00940000155586.B.jb	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000154396.a	ENSGT00940000155640
Japanese quail	MODERN SPECIES	699	RIC1 (ENSCJPG00005003232)	ERMP1 (ENSCJPG00005003237)	ENSCJPG00005003242	MLANA (ENSCJPG00005003245)	KIAA2026 (ENSCJPG00005003247)	UHRF2 (ENSCJPG00005003255)	GLDC (ENSCJPG00005003257)	ENSCJPG00005003260	ENSCJPG00005003265	PTPRD (ENSCJPG00005003278)	ENSCJPG00005003285	ENSCJPG00005003289	TYRP1 (ENSCJPG00005003297)	LURAP1L (ENSCJPG00005003298)	ENSCJPG00005003394	NFIB (ENSCJPG00005007386) ##22	CCDC171 (ENSCJPG00005007404)	PSIP1 (ENSCJPG00005007411)	TTC39B (ENSCJPG00005007562)	FREM1 (ENSCJPG00005007571)	CER1 (ENSCJPG00005007574)	ZDHHC21 (ENSCJPG00005007576)	ENSCJPG00005007601 ##22	BNC2 (ENSCJPG00005007620)	CNTLN (ENSCJPG00005007635)	SH3GL2 (ENSCJPG00005007638)	ADAMTSL1 (ENSCJPG00005007653)	SAXO1 (ENSCJPG00005007663)	HAUS6 (ENSCJPG00005007664)	PLIN2 (ENSCJPG00005007666)	DENND4C (ENSCJPG00005007667)
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000154737.d	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT00390000007924	ENSGT00940000154706	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b ##22	ENSGT00940000155586.B.jb	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000154396.a	ENSGT00940000155640
Chicken	MODERN SPECIES	131	HAUS6 (ENSGALG00010016114)	ENSGALG00010016080	SAXO1 (ENSGALG00010016073)	ADAMTSL1 (ENSGALG00010016043)	SH3GL2 (ENSGALG00010014197)	CNTLN (ENSGALG00010016566)	BNC2 (ENSGALG00010016535)	ENSGALG00010014439	CCDC171 (ENSGALG00010014372)	ENSGALG00010014049	PSIP1 (ENSGALG00010014035)	TTC39B (ENSGALG00010016468)	FREM1 (ENSGALG00010016463)	CER1 (ENSGALG00010016448)	ZDHHC21 (ENSGALG00010016445)	NFIB (ENSGALG00010016418) ##22	MPDZ (ENSGALG00010016251)	LURAP1L (ENSGALG00010016139)	TYRP1 (ENSGALG00010014092)	ENSGALG00010015966	PTPRD (ENSGALG00010012063)	KDM4C (ENSGALG00010011253)	GLDC (ENSGALG00010012973)	UHRF2 (ENSGALG00010012965)	KIAA2026 (ENSGALG00010012952)	MLANA (ENSGALG00010012923)	ENSGALG00010012919	ERMP1 (ENSGALG00010012904)	RIC1 (ENSGALG00010012889)	PDCD1LG2 (ENSGALG00010013312)	CD274 (ENSGALG00010012871)
Turkey	DUPLICATION
Turkey	MODERN SPECIES	1299	DENND4C (ENSMGAG00000005660)	PLIN2 (ENSMGAG00000005633)	HAUS6 (ENSMGAG00000020188)	SAXO1 (ENSMGAG00000005655)	ADAMTSL1 (ENSMGAG00000016070)	ENSMGAG00000020884	ENSMGAG00000008992	BNC2 (ENSMGAG00000021479)	ENSMGAG00000022161	CCDC171 (ENSMGAG00000020518)	PSIP1 (ENSMGAG00000005593)	ENSMGAG00000018925	ENSMGAG00000016461	CER1 (ENSMGAG00000005651)	FREM1 (ENSMGAG00000004727)	ENSMGAG00000007634 ##22	ENSMGAG00000016941 ##22	MPDZ (ENSMGAG00000019675)	TYRP1 (ENSMGAG00000005517)	PTPRD (ENSMGAG00000016387)	ENSMGAG00000003348	GLDC (ENSMGAG00000009587)	UHRF2 (ENSMGAG00000007128)	KIAA2026 (ENSMGAG00000021166)	MLANA (ENSMGAG00000005363)	ENSMGAG00000005367	ERMP1 (ENSMGAG00000005374)	RIC1 (ENSMGAG00000005427)	PDCD1LG2 (ENSMGAG00000020864)	ENSMGAG00000005340	ENSMGAG00000016647
Turkey	MODERN SPECIES	1299	PLIN2 (ENSMGAG00000005633)	HAUS6 (ENSMGAG00000020188)	SAXO1 (ENSMGAG00000005655)	ADAMTSL1 (ENSMGAG00000016070)	ENSMGAG00000020884	ENSMGAG00000008992	BNC2 (ENSMGAG00000021479)	ENSMGAG00000022161	CCDC171 (ENSMGAG00000020518)	PSIP1 (ENSMGAG00000005593)	ENSMGAG00000018925	ENSMGAG00000016461	CER1 (ENSMGAG00000005651)	FREM1 (ENSMGAG00000004727)	ENSMGAG00000007634 ##22	ENSMGAG00000016941 ##22	MPDZ (ENSMGAG00000019675)	TYRP1 (ENSMGAG00000005517)	PTPRD (ENSMGAG00000016387)	ENSMGAG00000003348	GLDC (ENSMGAG00000009587)	UHRF2 (ENSMGAG00000007128)	KIAA2026 (ENSMGAG00000021166)	MLANA (ENSMGAG00000005363)	ENSMGAG00000005367	ERMP1 (ENSMGAG00000005374)	RIC1 (ENSMGAG00000005427)	PDCD1LG2 (ENSMGAG00000020864)	ENSMGAG00000005340	ENSMGAG00000016647	JAK2 (ENSMGAG00000005291)
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375
Passeriformes	ANCESTRAL SPECIES	7	ENSGT00390000009819.a.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375
Great tit	MODERN SPECIES	642	DENND4C (ENSPMJG00000017699)	PLIN2 (ENSPMJG00000017698)	HAUS6 (ENSPMJG00000017696)	ENSPMJG00000017695	ADAMTSL1 (ENSPMJG00000017694)	SH3GL2 (ENSPMJG00000017693)	ENSPMJG00000017688	BNC2 (ENSPMJG00000017687)	CCDC171 (ENSPMJG00000017668)	PSIP1 (ENSPMJG00000017666)	SNAPC3 (ENSPMJG00000017665)	TTC39B (ENSPMJG00000017664)	FREM1 (ENSPMJG00000017644)	CER1 (ENSPMJG00000017643)	ZDHHC21 (ENSPMJG00000017642)	NFIB (ENSPMJG00000017641) ##22	MPDZ (ENSPMJG00000016245)	LURAP1L (ENSPMJG00000016242)	TYRP1 (ENSPMJG00000016241)	PTPRD (ENSPMJG00000016234)	ENSPMJG00000016233	KDM4C (ENSPMJG00000016232)	GLDC (ENSPMJG00000016231)	UHRF2 (ENSPMJG00000016230)	KIAA2026 (ENSPMJG00000016228)	MLANA (ENSPMJG00000016227)	ENSPMJG00000016226	ERMP1 (ENSPMJG00000016217)	RIC1 (ENSPMJG00000016216)	PDCD1LG2 (ENSPMJG00000016214)	CD274 (ENSPMJG00000016213)
Passeriformes_d	ANCESTRAL SPECIES	6	ENSGT00390000009819.a.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375
Flycatcher	MODERN SPECIES	243									CCDC171 (ENSFALG00000006548)	PSIP1 (ENSFALG00000006534)	SNAPC3 (ENSFALG00000006520)	TTC39B (ENSFALG00000006508)	FREM1 (ENSFALG00000006476)	CER1 (ENSFALG00000006452)	ZDHHC21 (ENSFALG00000006448)	NFIB (ENSFALG00000006420) ##22	MPDZ (ENSFALG00000006399)	TYRP1 (ENSFALG00000006385)	PTPRD (ENSFALG00000006309)
Passeriformes_g	ANCESTRAL SPECIES	7	ENSGT00390000009819.a.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00940000154434
Passeroidea	ANCESTRAL SPECIES	23	ENSGT00390000009819.a.a	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000169000	ENSGT00940000154434
Common canary	MODERN SPECIES	25	ACER2 (ENSSCAG00000001442)	ENSSCAG00000001449	DENND4C (ENSSCAG00000001467)	PLIN2 (ENSSCAG00000001499)	HAUS6 (ENSSCAG00000001512)	ADAMTSL1 (ENSSCAG00000001544)	SH3GL2 (ENSSCAG00000001580)	BNC2 (ENSSCAG00000001590)	CCDC171 (ENSSCAG00000001614)	PSIP1 (ENSSCAG00000001649)	SNAPC3 (ENSSCAG00000001672)	TTC39B (ENSSCAG00000001680)	FREM1 (ENSSCAG00000001715)	CER1 (ENSSCAG00000001779)	ZDHHC21 (ENSSCAG00000001780)	NFIB (ENSSCAG00000001799) ##22	MPDZ (ENSSCAG00000001857)	TYRP1 (ENSSCAG00000001949)	PTPRD (ENSSCAG00000002170)	ENSSCAG00000003109	ENSSCAG00000003133	ENSSCAG00000003143	PUM3 (ENSSCAG00000003162)	KCNV2 (ENSSCAG00000003167)	VLDLR (ENSSCAG00000003171)	SMARCA2 (ENSSCAG00000003181)	DMRT2 (ENSSCAG00000003191)	DMRT3 (ENSSCAG00000003195)	DMRT1 (ENSSCAG00000003198)	ENSSCAG00000003201	KANK1 (ENSSCAG00000003206)
Zebra finch	MODERN SPECIES	104	ENSTGUG00000004334	DENND4C (ENSTGUG00000004350)	PLIN2 (ENSTGUG00000004399)	HAUS6 (ENSTGUG00000026672)	ADAMTSL1 (ENSTGUG00000004435)	SH3GL2 (ENSTGUG00000004460)	ENSTGUG00000025732	BNC2 (ENSTGUG00000004482)	ENSTGUG00000004492	PSIP1 (ENSTGUG00000004519)	SNAPC3 (ENSTGUG00000004548)	TTC39B (ENSTGUG00000004554)	FREM1 (ENSTGUG00000004583)	CER1 (ENSTGUG00000004618)	ZDHHC21 (ENSTGUG00000029727)	NFIB (ENSTGUG00000004639) ##22	MPDZ (ENSTGUG00000004679)	LURAP1L (ENSTGUG00000004701)	TYRP1 (ENSTGUG00000004704)	PTPRD (ENSTGUG00000004740)	ENSTGUG00000019018	KDM4C (ENSTGUG00000004875)	GLDC (ENSTGUG00000004885)	UHRF2 (ENSTGUG00000004941)	KIAA2026 (ENSTGUG00000004976)	MLANA (ENSTGUG00000025611)	ENSTGUG00000004979	ERMP1 (ENSTGUG00000004990)	RIC1 (ENSTGUG00000005013)	PDCD1LG2 (ENSTGUG00000025704)	ENSTGUG00000005033
Medium ground finch	MODERN SPECIES	26	HAUS6 (ENSGFOG00000008571)	ADAMTSL1 (ENSGFOG00000008592)	SH3GL2 (ENSGFOG00000008649)	ENSGFOG00000008670	BNC2 (ENSGFOG00000008686)	ENSGFOG00000008696	ENSGFOG00000008702	ENSGFOG00000008704	PSIP1 (ENSGFOG00000008711)	SNAPC3 (ENSGFOG00000008717)	ENSGFOG00000008725	TTC39B (ENSGFOG00000008729)	FREM1 (ENSGFOG00000008747)	CER1 (ENSGFOG00000005820)	ZDHHC21 (ENSGFOG00000005822)	NFIB (ENSGFOG00000005834) ##22	MPDZ (ENSGFOG00000005978)	TYRP1 (ENSGFOG00000008774)
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154434
Golden eagle	MODERN SPECIES	91	SAXO1 (ENSACCG00020012163)	ADAMTSL1 (ENSACCG00020012441)	ENSACCG00020012754	ENSACCG00020012769	SH3GL2 (ENSACCG00020012786)	CNTLN (ENSACCG00020012818)	CCDC171 (ENSACCG00020012923)	PSIP1 (ENSACCG00020012989)	SNAPC3 (ENSACCG00020013010)	ENSACCG00020013032	TTC39B (ENSACCG00020013080)	ENSACCG00020013134	ENSACCG00020013168	CER1 (ENSACCG00020013190)	ZDHHC21 (ENSACCG00020013214)	NFIB (ENSACCG00020013265) ##22	MPDZ (ENSACCG00020013493)	LURAP1L (ENSACCG00020013735)	TYRP1 (ENSACCG00020013748)	ENSACCG00020013752	PTPRD (ENSACCG00020013775)	KDM4C (ENSACCG00020013865)	GLDC (ENSACCG00020013912)	UHRF2 (ENSACCG00020013943)	KIAA2026 (ENSACCG00020013976)	MLANA (ENSACCG00020013991)	ENSACCG00020014001	ERMP1 (ENSACCG00020014143)	RIC1 (ENSACCG00020014383)	PDCD1LG2 (ENSACCG00020014424)	ENSACCG00020014444
Kakapo	MODERN SPECIES	19	HAUS6 (ENSSHBG00005020065)	SAXO1 (ENSSHBG00005020075)	ENSSHBG00005020078	ENSSHBG00005020084	SH3GL2 (ENSSHBG00005020088)	ENSSHBG00005020091	CNTLN (ENSSHBG00005020093)	BNC2 (ENSSHBG00005020107)	CCDC171 (ENSSHBG00005020113)	PSIP1 (ENSSHBG00005020122)	SNAPC3 (ENSSHBG00005020126)	TTC39B (ENSSHBG00005020149)	FREM1 (ENSSHBG00005020181)	CER1 (ENSSHBG00005020194)	ZDHHC21 (ENSSHBG00005020195)	NFIB (ENSSHBG00005000187) ##22	ENSSHBG00005000194 ##22	MPDZ (ENSSHBG00005003173)	LURAP1L (ENSSHBG00005017290)	TYRP1 (ENSSHBG00005017292)	PTPRD (ENSSHBG00005017319)	ENSSHBG00005017356	ENSSHBG00005017358	GLDC (ENSSHBG00005017361)	UHRF2 (ENSSHBG00005017370)	KIAA2026 (ENSSHBG00005017376)	MLANA (ENSSHBG00005017380)	ENSSHBG00005017383	ERMP1 (ENSSHBG00005017385)	RIC1 (ENSSHBG00005017400)	PDCD1LG2 (ENSSHBG00005017476)
Cryptodira	ANCESTRAL SPECIES	63	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00950000185213	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a
Chinese turtle	MODERN SPECIES	668								BNC2 (ENSPSIG00000018240)	CCDC171 (ENSPSIG00000018249)	PSIP1 (ENSPSIG00000018261)	SNAPC3 (ENSPSIG00000007910)	TTC39B (ENSPSIG00000008198)	FREM1 (ENSPSIG00000009646)	CER1 (ENSPSIG00000011573)	ZDHHC21 (ENSPSIG00000011600)	NFIB (ENSPSIG00000011879) ##22	ENSPSIG00000001138	MPDZ (ENSPSIG00000012362)	ENSPSIG00000001192	LURAP1L (ENSPSIG00000012369)	TYRP1 (ENSPSIG00000012375)	ENSPSIG00000012762	ENSPSIG00000001210	ENSPSIG00000013032	ENSPSIG00000013046	ENSPSIG00000001237	KDM4C (ENSPSIG00000014316)	ENSPSIG00000014718	GLDC (ENSPSIG00000014726)	UHRF2 (ENSPSIG00000015068)
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00950000185213	ENSGT00940000156243	ENSGT00940000154737.d	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706.d	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970.g	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT01000000214430.c.b.b.a	ENSGT00950000182991.B	ENSGT00940000163078.b	ENSGT00940000163078.a	ENSGT00940000160640.a	ENSGT00940000156823.e	ENSGT00390000013920
Emydidae	ANCESTRAL SPECIES	20	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00950000185213	ENSGT00940000156243	ENSGT00940000154737.d	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706.d	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970.g	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT01000000214430.c.b.b.a	ENSGT01000000214430.c.b.b.b.a	ENSGT00950000182991.B	ENSGT00940000163078.b	ENSGT00940000163078.a	ENSGT00940000160640.a	ENSGT00940000156823.e
painted turtle	MODERN SPECIES	717						CNTLN (ENSCPBG00000025262)	BNC2 (ENSCPBG00000025268)	CCDC171 (ENSCPBG00000025280)	PSIP1 (ENSCPBG00000025305)	SNAPC3 (ENSCPBG00000025310)	TTC39B (ENSCPBG00000025312)	ENSCPBG00000025328	FREM1 (ENSCPBG00000025334)	CER1 (ENSCPBG00000025348)	ZDHHC21 (ENSCPBG00000025350)	NFIB (ENSCPBG00000025357) ##22	MPDZ (ENSCPBG00000025406)	LURAP1L (ENSCPBG00000026161)	TYRP1 (ENSCPBG00000026162)	PTPRD (ENSCPBG00000026171)	KDM4C (ENSCPBG00000026174)	GLDC (ENSCPBG00000026175)	UHRF2 (ENSCPBG00000026176)	KIAA2026 (ENSCPBG00000000133)
Three-toed box turtle	MODERN SPECIES	50	HAUS6 (ENSTMTG00000017410)	SAXO1 (ENSTMTG00000017388)	ENSTMTG00000017369	ENSTMTG00000017350	ENSTMTG00000017328	ENSTMTG00000017184	CNTLN (ENSTMTG00000017115)	BNC2 (ENSTMTG00000017070)	CCDC171 (ENSTMTG00000017030)	PSIP1 (ENSTMTG00000016979)	SNAPC3 (ENSTMTG00000016962)	TTC39B (ENSTMTG00000016892)	FREM1 (ENSTMTG00000016635)	CER1 (ENSTMTG00000016605)	ZDHHC21 (ENSTMTG00000016592)	NFIB (ENSTMTG00000016530) ##22	MPDZ (ENSTMTG00000016407)	LURAP1L (ENSTMTG00000016380)	TYRP1 (ENSTMTG00000016362)
Testudinidae	ANCESTRAL SPECIES	15	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000154737.d	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706.d	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970.h	ENSGT00390000017970.g	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT01000000214430.c.b.b.a	ENSGT00950000182991.B	ENSGT00940000163078.b	ENSGT00940000163078.a	ENSGT00940000160640.a
Goode s thornscrub tortoise	MODERN SPECIES	20	SAXO1 (ENSGEVG00005020536)	ENSGEVG00005020522	ENSGEVG00005020514	ENSGEVG00005020511	ENSGEVG00005020505	CNTLN (ENSGEVG00005020472)	BNC2 (ENSGEVG00005020446)	CCDC171 (ENSGEVG00005020428)	PSIP1 (ENSGEVG00005020410)	SNAPC3 (ENSGEVG00005020404)	TTC39B (ENSGEVG00005020399)	ENSGEVG00005020392	ENSGEVG00005020384	CER1 (ENSGEVG00005020383)	ZDHHC21 (ENSGEVG00005020380)	NFIB (ENSGEVG00005020350) ##22	MPDZ (ENSGEVG00005017577)	LURAP1L (ENSGEVG00005016378)	TYRP1 (ENSGEVG00005016317)	ENSGEVG00005016285	ENSGEVG00005016249	PTPRD (ENSGEVG00005014461)	KDM4C (ENSGEVG00005014259)	GLDC (ENSGEVG00005013317)	UHRF2 (ENSGEVG00005013188)	KIAA2026 (ENSGEVG00005013144)	ENSGEVG00005013096	ENSGEVG00005013057	MTAP (ENSGEVG00005013037)	ENSGEVG00005012973	ENSGEVG00005012955
Abingdon island giant tortoise	MODERN SPECIES	36												TTC39B (ENSCABG00000020447)	FREM1 (ENSCABG00000020448)	CER1 (ENSCABG00000020449)	ZDHHC21 (ENSCABG00000020450)	NFIB (ENSCABG00000020452) ##22
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00950000185213	ENSGT00940000156243	ENSGT00940000154737.d	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT01030000235336	ENSGT01030000235123	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434
tuatara	MODERN SPECIES	1085						ENSSPUG00000010110	ENSSPUG00000010126	ENSSPUG00000010136	PSIP1 (ENSSPUG00000010151)	SNAPC3 (ENSSPUG00000010167)	TTC39B (ENSSPUG00000010180)	ENSSPUG00000010201	ENSSPUG00000010230	CER1 (ENSSPUG00000010245)	ZDHHC21 (ENSSPUG00000010263)	NFIB (ENSSPUG00000010319) ##22	MPDZ (ENSSPUG00000010621)	LURAP1L (ENSSPUG00000010690)	TYRP1 (ENSSPUG00000010705)
Episquamata	ANCESTRAL SPECIES	6	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000154737.d	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640
Laterata	ANCESTRAL SPECIES	7	ENSGT00940000158215	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000154737.d	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640
Argentine black and white tegu	MODERN SPECIES	55	HAUS6 (ENSSMRG00000007188)	SAXO1 (ENSSMRG00000007183)	ADAMTSL1 (ENSSMRG00000007171)	ENSSMRG00000007139	CNTLN (ENSSMRG00000007110)	BNC2 (ENSSMRG00000007090)	ENSSMRG00000007076	CCDC171 (ENSSMRG00000007041)	PSIP1 (ENSSMRG00000007008)	SNAPC3 (ENSSMRG00000007002)	TTC39B (ENSSMRG00000006972)	FREM1 (ENSSMRG00000006915)	CER1 (ENSSMRG00000006900)	ZDHHC21 (ENSSMRG00000006897)	ENSSMRG00000006894	NFIB (ENSSMRG00000006870) ##22	MPDZ (ENSSMRG00000006736)	LURAP1L (ENSSMRG00000006726)	TYRP1 (ENSSMRG00000006715)	ENSSMRG00000006709	PTPRD (ENSSMRG00000006679)	KDM4C (ENSSMRG00000006595)	ENSSMRG00000006563	GLDC (ENSSMRG00000006545)	UHRF2 (ENSSMRG00000006533)	DENND4C (ENSSMRG00000006507)	ENSSMRG00000006495	ACER2 (ENSSMRG00000006492)	SLC24A2 (ENSSMRG00000006485)	MLLT3 (ENSSMRG00000006460)	FOCAD (ENSSMRG00000006408)
Common wall lizard	MODERN SPECIES	8	KIAA1958 (ENSPMRG00000016860)	ENSPMRG00000016864	HSDL2 (ENSPMRG00000016872)	PTBP3 (ENSPMRG00000016883)	SUSD1 (ENSPMRG00000016911)	ENSPMRG00000016917	UGCG (ENSPMRG00000016919)	GNG10 (ENSPMRG00000016923)	DNAJC25 (ENSPMRG00000016927)	ECPAS (ENSPMRG00000016941)	LINGO2 (ENSPMRG00000017007)	ENSPMRG00000017010	FREM1 (ENSPMRG00000017029)	CER1 (ENSPMRG00000017086)	ZDHHC21 (ENSPMRG00000017089)	NFIB (ENSPMRG00000017099) ##22	ENSPMRG00000017112	MPDZ (ENSPMRG00000017560)	LURAP1L (ENSPMRG00000020592)	TYRP1 (ENSPMRG00000020595)	ENSPMRG00000020605	PTPRD (ENSPMRG00000020631)	ENSPMRG00000020725	KDM4C (ENSPMRG00000020731)	GLDC (ENSPMRG00000020751)	UHRF2 (ENSPMRG00000020766)	KIAA2026 (ENSPMRG00000020779)	MLANA (ENSPMRG00000020786)	ERMP1 (ENSPMRG00000020796)	RIC1 (ENSPMRG00000020809)	PDCD1LG2 (ENSPMRG00000020831)
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000154737.d	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640
Lizard	MODERN SPECIES	1	ENSACAG00000045311	ENSACAG00000042754	SEMA4D (ENSACAG00000016619)	ENSACAG00000041237	ENSACAG00000017719	CNTLN (ENSACAG00000017738)	BNC2 (ENSACAG00000017743)	ENSACAG00000042042	CCDC171 (ENSACAG00000017752)	ENSACAG00000017757	SNAPC3 (ENSACAG00000017765)	TTC39B (ENSACAG00000017770)	FREM1 (ENSACAG00000017780)	CER1 (ENSACAG00000017792)	ZDHHC21 (ENSACAG00000017794)	NFIB (ENSACAG00000017798) ##22	ENSACAG00000042712	MPDZ (ENSACAG00000011304)	LURAP1L (ENSACAG00000042509)	TYRP1 (ENSACAG00000011322)	ENSACAG00000035420	DIRAS2 (ENSACAG00000000763)	SYK (ENSACAG00000000768)	ENSACAG00000037605	ENSACAG00000035309	ENSACAG00000044268	NFIL3 (ENSACAG00000000915)	ENSACAG00000043875	ROR2 (ENSACAG00000000922)	SPTLC1 (ENSACAG00000001052)	CDC42SE2 (ENSACAG00000001389)
Elapidae	ANCESTRAL SPECIES	7	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243.k	ENSGT00940000154737.d	ENSGT00440000034932	ENSGT00390000005844.a.b.c	ENSGT01060000248998	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT01010000229860	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00530000063839.f	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000155640	ENSGT00530000063404.a
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	1	SAXO1 (ENSNNAG00000011242)	ENSNNAG00000011280	ENSNNAG00000011353	ENSNNAG00000011422	CNTLN (ENSNNAG00000011473)	BNC2 (ENSNNAG00000011632)	ENSNNAG00000011700	CCDC171 (ENSNNAG00000011728)	PSIP1 (ENSNNAG00000011885)	SNAPC3 (ENSNNAG00000011912)	TTC39B (ENSNNAG00000011968)	FREM1 (ENSNNAG00000012141)	CER1 (ENSNNAG00000012247)	ZDHHC21 (ENSNNAG00000012263)	ENSNNAG00000012307 ##22	ENSNNAG00000012327 ##22	ENSNNAG00000012358	ENSNNAG00000012381	ENSNNAG00000012517	ENSNNAG00000012559	PTPRD (ENSNNAG00000012603)	ENSNNAG00000013031	KDM4C (ENSNNAG00000013058)	GLDC (ENSNNAG00000013176)	UHRF2 (ENSNNAG00000013890)	KIAA2026 (ENSNNAG00000014777)	ERMP1 (ENSNNAG00000014841)	RIC1 (ENSNNAG00000015205)	PDCD1LG2 (ENSNNAG00000015251)	PLGRKT (ENSNNAG00000015298)	JAK2 (ENSNNAG00000015311)
Indian cobra	MODERN SPECIES	1	HAUS6 (ENSNNAG00000010895)	SAXO1 (ENSNNAG00000011242)	ENSNNAG00000011280	ENSNNAG00000011353	ENSNNAG00000011422	CNTLN (ENSNNAG00000011473)	BNC2 (ENSNNAG00000011632)	ENSNNAG00000011700	CCDC171 (ENSNNAG00000011728)	PSIP1 (ENSNNAG00000011885)	SNAPC3 (ENSNNAG00000011912)	TTC39B (ENSNNAG00000011968)	FREM1 (ENSNNAG00000012141)	CER1 (ENSNNAG00000012247)	ZDHHC21 (ENSNNAG00000012263)	ENSNNAG00000012307 ##22	ENSNNAG00000012327 ##22	ENSNNAG00000012358	ENSNNAG00000012381	ENSNNAG00000012517	ENSNNAG00000012559	PTPRD (ENSNNAG00000012603)	ENSNNAG00000013031	KDM4C (ENSNNAG00000013058)	GLDC (ENSNNAG00000013176)	UHRF2 (ENSNNAG00000013890)	KIAA2026 (ENSNNAG00000014777)	ERMP1 (ENSNNAG00000014841)	RIC1 (ENSNNAG00000015205)	PDCD1LG2 (ENSNNAG00000015251)	PLGRKT (ENSNNAG00000015298)
Elapidae_a	ANCESTRAL SPECIES	101														ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT01010000229860	ENSGT00940000154930.a	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00530000063839.f	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000155640	ENSGT00530000063404.a
Acanthophiinae	ANCESTRAL SPECIES	9														ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT01010000229860	ENSGT00940000154930.a	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00530000063839.f	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000155640	ENSGT00530000063404.a
Eastern brown snake	MODERN SPECIES	106														CER1 (ENSPTXG00000017233)	ZDHHC21 (ENSPTXG00000017234)	NFIB (ENSPTXG00000017239) ##22	MPDZ (ENSPTXG00000017313)	LURAP1L (ENSPTXG00000018633)	TYRP1 (ENSPTXG00000018634)
Mainland tiger snake	MODERN SPECIES	1														CER1 (ENSNSUG00000020112)	ZDHHC21 (ENSNSUG00000020111)	NFIB (ENSNSUG00000020094) ##22	MPDZ (ENSNSUG00000020067)	LURAP1L (ENSNSUG00000020056)	TYRP1 (ENSNSUG00000020055)	PTPRD (ENSNSUG00000020025)	ENSNSUG00000020021	KDM4C (ENSNSUG00000019947)	GLDC (ENSNSUG00000019946)	UHRF2 (ENSNSUG00000019944)	KIAA2026 (ENSNSUG00000019940)	ENSNSUG00000019939	ENSNSUG00000019938	RIC1 (ENSNSUG00000019937)	PDCD1LG2 (ENSNSUG00000019936)	PLGRKT (ENSNSUG00000019935)	JAK2 (ENSNSUG00000019934)
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	5517																NFIB (ENSLLTG00000003082) ##22
Blue-lipped sea krait	MODERN SPECIES	5771																ENSLLTG00000009923 ##22
Mammalia	ANCESTRAL SPECIES	24	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00950000185213	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434
Platypus	MODERN SPECIES	88	LPAR1 (ENSOANG00000006973)	PLIN2 (ENSOANG00000004119)	ENSOANG00000030578	ENSOANG00000009222	ENSOANG00000022528	ADAMTSL1 (ENSOANG00000009223)	SH3GL2 (ENSOANG00000003340)	CNTLN (ENSOANG00000003339)	BNC2 (ENSOANG00000012860)	ENSOANG00000010111	PSIP1 (ENSOANG00000010112)	SNAPC3 (ENSOANG00000010116)	ENSOANG00000010119	FREM1 (ENSOANG00000010120)	ZDHHC21 (ENSOANG00000010121)	NFIB (ENSOANG00000010122) ##22	MPDZ (ENSOANG00000013531)	ENSOANG00000043631	LURAP1L (ENSOANG00000013530)	ENSOANG00000004481	ENSOANG00000042288	ENSOANG00000002888	PTPRD (ENSOANG00000001492)	ENSOANG00000050891	ENSOANG00000000163	ENSOANG00000001081	GLDC (ENSOANG00000041168)	UHRF2 (ENSOANG00000001083)	KIAA2026 (ENSOANG00000015760)	MLANA (ENSOANG00000036136)	ERMP1 (ENSOANG00000010083)
Theria	ANCESTRAL SPECIES	30	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00950000185213	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375
Eutheria	ANCESTRAL SPECIES	7	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Boreoeutheria	ANCESTRAL SPECIES	10	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT01030000235336	ENSGT01030000235123	ENSGT00940000167408	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT01030000235336	ENSGT01030000235123	ENSGT00940000167408	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b ##22
Hedgehog	MODERN SPECIES	4435																NFIB (ENSEEUG00000012997) ##22
Common shrew	MODERN SPECIES	3397																ENSSARG00000003971 ##22
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT00440000034932	ENSGT00940000174448	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT01030000235336	ENSGT01030000235123	ENSGT00940000167408	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00940000174448	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Cetacea	ANCESTRAL SPECIES	9	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706.fb	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970.k	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00940000167219	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00980000202136	ENSGT00390000007924	ENSGT00940000154706.fb	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970.k	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00940000167219	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00980000202136	ENSGT00390000007924	ENSGT00940000154706.fb	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970.k	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00940000167219	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00980000202136	ENSGT00390000007924	ENSGT00940000154706.fb	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970.k	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00940000167219	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00980000202136	ENSGT00390000007924	ENSGT00940000154706.fb	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970.k	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Narwhal	MODERN SPECIES	312	PLIN2 (ENSMMNG00015016875)	HAUS6 (ENSMMNG00015016919)	RRAGA (ENSMMNG00015017043)	SAXO1 (ENSMMNG00015017061)	ADAMTSL1 (ENSMMNG00015017181)	SH3GL2 (ENSMMNG00015017433)	CNTLN (ENSMMNG00015017488)	BNC2 (ENSMMNG00015017606)	CCDC171 (ENSMMNG00015017724)	ENSMMNG00015017788	SNAPC3 (ENSMMNG00015017842)	TTC39B (ENSMMNG00015017960)	FREM1 (ENSMMNG00015018425)	CER1 (ENSMMNG00015018604)	ZDHHC21 (ENSMMNG00015018625)	NFIB (ENSMMNG00015018858) ##22	MPDZ (ENSMMNG00015019518)	LURAP1L (ENSMMNG00015019625)	TYRP1 (ENSMMNG00015019643)	ENSMMNG00015019665	ENSMMNG00015019678	PTPRD (ENSMMNG00015019797)	ENSMMNG00015020117	KDM4C (ENSMMNG00015020148)	GLDC (ENSMMNG00015020203)	UHRF2 (ENSMMNG00015020267)	TPD52L3 (ENSMMNG00015020325)	IL33 (ENSMMNG00015020337)	ENSMMNG00015020366	KIAA2026 (ENSMMNG00015020402)	MLANA (ENSMMNG00015020456)
Beluga whale	MODERN SPECIES	50	SAXO1 (ENSDLEG00000020320)	ADAMTSL1 (ENSDLEG00000020295)	SH3GL2 (ENSDLEG00000020276)	ENSDLEG00000020272	CNTLN (ENSDLEG00000020249)	BNC2 (ENSDLEG00000020245)	ENSDLEG00000020244	CCDC171 (ENSDLEG00000020209)	ENSDLEG00000020205	ENSDLEG00000020201	SNAPC3 (ENSDLEG00000020200)	TTC39B (ENSDLEG00000020187)	FREM1 (ENSDLEG00000020177)	CER1 (ENSDLEG00000020173)	ZDHHC21 (ENSDLEG00000020168)	NFIB (ENSDLEG00000020159) ##22	MPDZ (ENSDLEG00000014917)	LURAP1L (ENSDLEG00000014337)	TYRP1 (ENSDLEG00000014303)	ENSDLEG00000014285	PTPRD (ENSDLEG00000014171)	ENSDLEG00000014144	ENSDLEG00000014119	KDM4C (ENSDLEG00000014058)	GLDC (ENSDLEG00000019814)	UHRF2 (ENSDLEG00000019777)	TPD52L3 (ENSDLEG00000019764)	IL33 (ENSDLEG00000019759)	RANBP6 (ENSDLEG00000019757)	KIAA2026 (ENSDLEG00000019748)	MLANA (ENSDLEG00000019742)
Vaquita	MODERN SPECIES	17	RRAGA (ENSPSNG00000000588)	SAXO1 (ENSPSNG00000000559)	ADAMTSL1 (ENSPSNG00000000378)	SH3GL2 (ENSPSNG00000000201)	ENSPSNG00000022547	CNTLN (ENSPSNG00000022536)	BNC2 (ENSPSNG00000022532)	CCDC171 (ENSPSNG00000022518)	ENSPSNG00000022504	SNAPC3 (ENSPSNG00000022494)	TTC39B (ENSPSNG00000022479)	ENSPSNG00000022475	FREM1 (ENSPSNG00000022456)	CER1 (ENSPSNG00000022441)	ZDHHC21 (ENSPSNG00000022435)	NFIB (ENSPSNG00000022385) ##22	MPDZ (ENSPSNG00000022311)	LURAP1L (ENSPSNG00000022271)	TYRP1 (ENSPSNG00000022265)	ENSPSNG00000022260	ENSPSNG00000022254	PTPRD (ENSPSNG00000021753)	DMAC1 (ENSPSNG00000021465)	KDM4C (ENSPSNG00000021418)	GLDC (ENSPSNG00000021229)	UHRF2 (ENSPSNG00000021087)	TPD52L3 (ENSPSNG00000021045)	IL33 (ENSPSNG00000021022)	RANBP6 (ENSPSNG00000020980)	KIAA2026 (ENSPSNG00000020897)	MLANA (ENSPSNG00000020843)
Dolphin	MODERN SPECIES	965																NFIB (ENSTTRG00000010572) ##22
Sperm whale	MODERN SPECIES	20	RRAGA (ENSPCTG00005014645)	SAXO1 (ENSPCTG00005014539)	ADAMTSL1 (ENSPCTG00005014310)	SH3GL2 (ENSPCTG00005014162)	ENSPCTG00005014109	CNTLN (ENSPCTG00005013443)	BNC2 (ENSPCTG00005013082)	ENSPCTG00005012892	CCDC171 (ENSPCTG00005012856)	PSIP1 (ENSPCTG00005012760)	SNAPC3 (ENSPCTG00005012674)	TTC39B (ENSPCTG00005012122)	FREM1 (ENSPCTG00005011922)	CER1 (ENSPCTG00005011869)	ZDHHC21 (ENSPCTG00005011818)	NFIB (ENSPCTG00005011215) ##22	MPDZ (ENSPCTG00005010169)	LURAP1L (ENSPCTG00005010045)	TYRP1 (ENSPCTG00005010004)	ENSPCTG00005009971	ENSPCTG00005009950	ENSPCTG00005009943	ENSPCTG00005009904	PTPRD (ENSPCTG00005007163)	DMAC1 (ENSPCTG00005006883)	KDM4C (ENSPCTG00005006836)	ENSPCTG00005006795	ENSPCTG00005006778	GLDC (ENSPCTG00005006582)	UHRF2 (ENSPCTG00005006451)	TPD52L3 (ENSPCTG00005006421)
Blue whale	MODERN SPECIES	17	RRAGA (ENSBMSG00010000814)	SAXO1 (ENSBMSG00010000850)	ADAMTSL1 (ENSBMSG00010000917)	SH3GL2 (ENSBMSG00010000983)	CNTLN (ENSBMSG00010001014)	ENSBMSG00010001031	BNC2 (ENSBMSG00010001079)	CCDC171 (ENSBMSG00010001177)	ENSBMSG00010001228	ENSBMSG00010001274	SNAPC3 (ENSBMSG00010001390)	TTC39B (ENSBMSG00010001423)	FREM1 (ENSBMSG00010001498)	CER1 (ENSBMSG00010001538)	ZDHHC21 (ENSBMSG00010001550)	NFIB (ENSBMSG00010001691) ##22	MPDZ (ENSBMSG00010002836)	LURAP1L (ENSBMSG00010002885)	TYRP1 (ENSBMSG00010002890)	ENSBMSG00010002910	ENSBMSG00010002917	PTPRD (ENSBMSG00010003108)	ENSBMSG00010003625	DMAC1 (ENSBMSG00010003630)	KDM4C (ENSBMSG00010003640)	ENSBMSG00010003657	ENSBMSG00010003666	ENSBMSG00010003689	UHRF2 (ENSBMSG00010003727)	ENSBMSG00010003737	ENSBMSG00010003740
Pecora	ANCESTRAL SPECIES	30	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Yarkand deer	MODERN SPECIES	21	ADAMTSL1 (ENSCHYG00000016203)	ENSCHYG00000016808	ENSCHYG00000016858	ENSCHYG00000016900	SH3GL2 (ENSCHYG00000016922)	CNTLN (ENSCHYG00000017019)	BNC2 (ENSCHYG00000017910)	CCDC171 (ENSCHYG00000018817)	ENSCHYG00000020029	SNAPC3 (ENSCHYG00000020183)	TTC39B (ENSCHYG00000020315)	FREM1 (ENSCHYG00000021523)	CER1 (ENSCHYG00000022269)	ZDHHC21 (ENSCHYG00000022318)	ENSCHYG00000022379	NFIB (ENSCHYG00000022448) ##22	MPDZ (ENSCHYG00000023141)	ENSCHYG00000025300	LURAP1L (ENSCHYG00000025308)	TYRP1 (ENSCHYG00000025323)	ENSCHYG00000025365	ENSCHYG00000025372	ENSCHYG00000025381	ENSCHYG00000025418	PTPRD (ENSCHYG00000025507)	DMAC1 (ENSCHYG00000025835)	KDM4C (ENSCHYG00000025863)	ENSCHYG00000025980	ENSCHYG00000025986	GLDC (ENSCHYG00000025997)	UHRF2 (ENSCHYG00000026053)
Percora_a	ANCESTRAL SPECIES	24	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Bovidae	ANCESTRAL SPECIES	14	ENSGT00940000154445.c.b	ENSGT00940000160529	ENSGT00440000034932	ENSGT01010000222946.d.a	ENSGT00390000012916.y.a.a.a	ENSGT00940000174448	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000156197.c.b	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531
Caprinae	ANCESTRAL SPECIES	14	ENSGT00940000156243	ENSGT00940000154445.c.b	ENSGT00940000160529	ENSGT00440000034932	ENSGT01010000222946.d.a	ENSGT00390000012916.y.a.a.a	ENSGT00940000174448	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706.hb	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000156197.c.b	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020020688	SH3GL2 (ENSOARG00020020587)	ENSOARG00020020547	CNTLN (ENSOARG00020019193)	ENSOARG00020019104	ENSOARG00020019055	BNC2 (ENSOARG00020019012)	CCDC171 (ENSOARG00020018543)	PSIP1 (ENSOARG00020018370)	SNAPC3 (ENSOARG00020018297)	TTC39B (ENSOARG00020015060)	FREM1 (ENSOARG00020014731)	CER1 (ENSOARG00020014680)	ZDHHC21 (ENSOARG00020014506)	MAGOH (ENSOARG00020014469)	NFIB (ENSOARG00020013533) ##22	ENSOARG00020013372	ENSOARG00020013331	MPDZ (ENSOARG00020012892)	ENSOARG00020012805	LURAP1L (ENSOARG00020012766)	TYRP1 (ENSOARG00020012665)	ENSOARG00020012534	ENSOARG00020012496	PTPRD (ENSOARG00020010720)	DMAC1 (ENSOARG00020010598)	ENSOARG00020010545	KDM4C (ENSOARG00020010019)	ENSOARG00020009937	GLDC (ENSOARG00020009656)	UHRF2 (ENSOARG00020009402)
Goat	MODERN SPECIES	27	RRAGA (ENSCHIG00000004994)	SAXO1 (ENSCHIG00000015222)	ADAMTSL1 (ENSCHIG00000025981)	SH3GL2 (ENSCHIG00000020328)	CNTLN (ENSCHIG00000013033)	BNC2 (ENSCHIG00000026061)	ENSCHIG00000018914	CCDC171 (ENSCHIG00000013723)	ENSCHIG00000008194	ENSCHIG00000016679	SNAPC3 (ENSCHIG00000020068)	TTC39B (ENSCHIG00000010421)	FREM1 (ENSCHIG00000026018)	CER1 (ENSCHIG00000016733)	ZDHHC21 (ENSCHIG00000021429)	NFIB (ENSCHIG00000012253) ##22	ENSCHIG00000024971	MPDZ (ENSCHIG00000022331)	LURAP1L (ENSCHIG00000015129)	TYRP1 (ENSCHIG00000026269)	ENSCHIG00000016449	ENSCHIG00000007639	ENSCHIG00000023085	PTPRD (ENSCHIG00000017325)	DMAC1 (ENSCHIG00000012785)	KDM4C (ENSCHIG00000026551)	ENSCHIG00000003454	ENSCHIG00000003295	GLDC (ENSCHIG00000022064)	UHRF2 (ENSCHIG00000015113)	ENSCHIG00000026418
Bovinae	ANCESTRAL SPECIES	14	ENSGT00940000156243	ENSGT00940000154445.c.b	ENSGT00940000160529	ENSGT00440000034932	ENSGT01010000222946.d.a	ENSGT00390000012916.y.a.a.a	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000156197.c.b	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000010415.b	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531
Bos	ANCESTRAL SPECIES	10	ENSGT00950000183031.B.e.b.a.a.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000154445.c.b	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155485.a.a.b.a.b	ENSGT00940000153169.A.b.b.a.a.a.b.l.d	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000010415.b	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483
Bos_b	ANCESTRAL SPECIES	3	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000154445.c.b	ENSGT00940000160529	ENSGT00440000034932	ENSGT01010000222946.d.a	ENSGT00390000005844.a.b	ENSGT00940000153272.a.b.z.a.a.b.b.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155485.a.a.b.a.b.a	ENSGT00940000153169.A.b.b.a.a.a.b.l.d	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000156197.c.b	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000010415.b	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431
Hybrid Bos Indicus	MODERN SPECIES	27	ENSBIXG00005004132	SH3GL2 (ENSBIXG00005024065)	CNTLN (ENSBIXG00005004104)	BNC2 (ENSBIXG00005023593)	ENSBIXG00005004005	ENSBIXG00005023383	CCDC171 (ENSBIXG00005023307)	PSIP1 (ENSBIXG00005023133)	SNAPC3 (ENSBIXG00005023074)	TTC39B (ENSBIXG00005022889)	FREM1 (ENSBIXG00005022347)	CER1 (ENSBIXG00005022110)	ZDHHC21 (ENSBIXG00005022088)	ENSBIXG00005007219	ENSBIXG00005022053	NFIB (ENSBIXG00005022011) ##22	ENSBIXG00005021690	MPDZ (ENSBIXG00005021591)	ENSBIXG00005021107	LURAP1L (ENSBIXG00005021080)	TYRP1 (ENSBIXG00005021057)	ENSBIXG00005021026	ENSBIXG00005020918	ENSBIXG00005020897	PTPRD (ENSBIXG00005007348)	ENSBIXG00005020457	DMAC1 (ENSBIXG00005020420)	KDM4C (ENSBIXG00005020365)	ENSBIXG00005020300	ENSBIXG00005020277	GLDC (ENSBIXG00005003384)
Cow	MODERN SPECIES	27	SAXO1 (ENSBTAG00000001322)	ADAMTSL1 (ENSBTAG00000002997)	ENSBTAG00000052821	SH3GL2 (ENSBTAG00000014103)	CNTLN (ENSBTAG00000001847)	BNC2 (ENSBTAG00000003669)	ENSBTAG00000050560	ENSBTAG00000051373	CCDC171 (ENSBTAG00000015788)	PSIP1 (ENSBTAG00000007872)	SNAPC3 (ENSBTAG00000004592)	TTC39B (ENSBTAG00000003943)	FREM1 (ENSBTAG00000020141)	CER1 (ENSBTAG00000020140)	ZDHHC21 (ENSBTAG00000006197)	NFIB (ENSBTAG00000027442) ##22	ENSBTAG00000051763	ENSBTAG00000050450	MPDZ (ENSBTAG00000043961)	LURAP1L (ENSBTAG00000010431)	TYRP1 (ENSBTAG00000020985)	PTPRD (ENSBTAG00000010178)	DMAC1 (ENSBTAG00000015963)	KDM4C (ENSBTAG00000043987)	GLDC (ENSBTAG00000025903)	UHRF2 (ENSBTAG00000020815)	ENSBTAG00000011161	TPD52L3 (ENSBTAG00000011160)	IL33 (ENSBTAG00000018347)	RANBP6 (ENSBTAG00000012168)	KIAA2026 (ENSBTAG00000047550)
Bos_a	ANCESTRAL SPECIES	69	ENSGT00390000008250	ENSGT00950000183031.B.e.b.a.a.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155485.a.a.b.a.b	ENSGT00940000153169.A.b.b.a.a.a.b.l.d	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804
Wild yak	MODERN SPECIES	248		SAXO1 (ENSBMUG00000023083)	ADAMTSL1 (ENSBMUG00000023158)	SH3GL2 (ENSBMUG00000023179)	CNTLN (ENSBMUG00000023260)	BNC2 (ENSBMUG00000023306)	ENSBMUG00000023316	CCDC171 (ENSBMUG00000023392)	PSIP1 (ENSBMUG00000023451)	ENSBMUG00000023480	ENSBMUG00000023483	TTC39B (ENSBMUG00000023513)	FREM1 (ENSBMUG00000023548)	CER1 (ENSBMUG00000023570)	ZDHHC21 (ENSBMUG00000023580)	NFIB (ENSBMUG00000023743) ##22
Domestic yak	MODERN SPECIES	26	SH3GL2 (ENSBGRG00000001359)	CNTLN (ENSBGRG00000001209)	ENSBGRG00000001180	ENSBGRG00000001168	ENSBGRG00000001156	BNC2 (ENSBGRG00000001132)	ENSBGRG00000001114	CCDC171 (ENSBGRG00000001014)	PSIP1 (ENSBGRG00000000925)	SNAPC3 (ENSBGRG00000000894)	TTC39B (ENSBGRG00000000855)	ENSBGRG00000000840	FREM1 (ENSBGRG00000000792)	CER1 (ENSBGRG00000000761)	ZDHHC21 (ENSBGRG00000000701)	NFIB (ENSBGRG00000000469) ##22	ENSBGRG00000000367	ENSBGRG00000009063	ENSBGRG00000009027	MPDZ (ENSBGRG00000008603)	LURAP1L (ENSBGRG00000008550)	TYRP1 (ENSBGRG00000008419)	ENSBGRG00000008400	ENSBGRG00000008319	ENSBGRG00000008285	ENSBGRG00000008266	PTPRD (ENSBGRG00000007730)	DMAC1 (ENSBGRG00000007629)	KDM4C (ENSBGRG00000007351)	GLDC (ENSBGRG00000006945)	UHRF2 (ENSBGRG00000006794)
American bison	MODERN SPECIES	3290	ENSBBBG00000017875	SAXO1 (ENSBBBG00000017886)	ADAMTSL1 (ENSBBBG00000008934)	SH3GL2 (ENSBBBG00000018088)	CNTLN (ENSBBBG00000018243)	ENSBBBG00000004478	ENSBBBG00000018269	BNC2 (ENSBBBG00000018306)	CCDC171 (ENSBBBG00000018338)	PSIP1 (ENSBBBG00000018434)	SNAPC3 (ENSBBBG00000004526)	TTC39B (ENSBBBG00000004559)	FREM1 (ENSBBBG00000018588)	CER1 (ENSBBBG00000004604)	ZDHHC21 (ENSBBBG00000018604)	NFIB (ENSBBBG00000004689) ##22	MPDZ (ENSBBBG00000009182)	LURAP1L (ENSBBBG00000019440)	TYRP1 (ENSBBBG00000005231)	ENSBBBG00000005234	ENSBBBG00000005240	PTPRD (ENSBBBG00000005080)	DMAC1 (ENSBBBG00000020176)	KDM4C (ENSBBBG00000005462)	ENSBBBG00000020239	GLDC (ENSBBBG00000005035)	UHRF2 (ENSBBBG00000020305)	ENSBBBG00000020318	ENSBBBG00000020325	IL33 (ENSBBBG00000020339)
Siberian musk deer	MODERN SPECIES	109	ENSMMSG00000002061	ENSMMSG00000002077	ENSMMSG00000002089	SH3GL2 (ENSMMSG00000002113)	CNTLN (ENSMMSG00000002129)	ENSMMSG00000002171	ENSMMSG00000002181	BNC2 (ENSMMSG00000002209)	CCDC171 (ENSMMSG00000002290)	PSIP1 (ENSMMSG00000002346)	SNAPC3 (ENSMMSG00000002384)	TTC39B (ENSMMSG00000002423)	FREM1 (ENSMMSG00000000034)	CER1 (ENSMMSG00000000079)	ZDHHC21 (ENSMMSG00000000101)	NFIB (ENSMMSG00000000239) ##22	MPDZ (ENSMMSG00000000540)	LURAP1L (ENSMMSG00000000872)	TYRP1 (ENSMMSG00000000891)	ENSMMSG00000000939	ENSMMSG00000000975
Camelidae	ANCESTRAL SPECIES	5	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970.j	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Arabian camel	MODERN SPECIES	30	RRAGA (ENSCDRG00005000730)	SAXO1 (ENSCDRG00005000701)	ENSCDRG00005000592	ENSCDRG00005000656	SH3GL2 (ENSCDRG00005000538)	CNTLN (ENSCDRG00005000497)	BNC2 (ENSCDRG00005000440)	CCDC171 (ENSCDRG00005000197)	PSIP1 (ENSCDRG00005000111)	SNAPC3 (ENSCDRG00005016654)	TTC39B (ENSCDRG00005016086)	ENSCDRG00005016048	FREM1 (ENSCDRG00005015719)	CER1 (ENSCDRG00005015672)	ZDHHC21 (ENSCDRG00005015597)	NFIB (ENSCDRG00005014901) ##22	MPDZ (ENSCDRG00005006456)	LURAP1L (ENSCDRG00005006202)	TYRP1 (ENSCDRG00005006115)	ENSCDRG00005006094	ENSCDRG00005006083	PTPRD (ENSCDRG00005005639)	DMAC1 (ENSCDRG00005005564)	KDM4C (ENSCDRG00005005441)	GLDC (ENSCDRG00005005386)	UHRF2 (ENSCDRG00005005328)	TPD52L3 (ENSCDRG00005005309)	IL33 (ENSCDRG00005005282)	ENSCDRG00005005267	KIAA2026 (ENSCDRG00005005203)	MLANA (ENSCDRG00005005180)
Alpaca	MODERN SPECIES	2814									CCDC171 (ENSVPAG00000005825)	PSIP1 (ENSVPAG00000005824)	SNAPC3 (ENSVPAG00000005822)	TTC39B (ENSVPAG00000005821)	FREM1 (ENSVPAG00000005812)	ENSVPAG00000005810	ZDHHC21 (ENSVPAG00000005809)	NFIB (ENSVPAG00000005804) ##22	ENSVPAG00000005802
Suina	ANCESTRAL SPECIES	23	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00940000174448	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Pig	MODERN SPECIES		HAUS6 (ENSSSCG00000005173)	RRAGA (ENSSSCG00000005174)	SAXO1 (ENSSSCG00000040408)	ADAMTSL1 (ENSSSCG00000040366)	SH3GL2 (ENSSSCG00000005177)	CNTLN (ENSSSCG00000005178)	ENSSSCG00000044896	BNC2 (ENSSSCG00000005180)	CCDC171 (ENSSSCG00000005182)	PSIP1 (ENSSSCG00000005183)	SNAPC3 (ENSSSCG00000005184)	TTC39B (ENSSSCG00000005186)	FREM1 (ENSSSCG00000039025)	CER1 (ENSSSCG00000039169)	ZDHHC21 (ENSSSCG00000035730)	NFIB (ENSSSCG00000005190) ##22	MPDZ (ENSSSCG00000005191)	LURAP1L (ENSSSCG00000036360)	TYRP1 (ENSSSCG00000005193)	ENSSSCG00000044797	ENSSSCG00000046197	ENSSSCG00000041506	PTPRD (ENSSSCG00000005194)	ENSSSCG00000060403	DMAC1 (ENSSSCG00000005196)	ENSSSCG00000062923	ENSSSCG00000046128	KDM4C (ENSSSCG00000005198)	GLDC (ENSSSCG00000005199)	UHRF2 (ENSSSCG00000005201)	RANBP6 (ENSSSCG00000005204)
Chacoan peccary	MODERN SPECIES	20				ADAMTSL1 (ENSCWAG00000000833)	SH3GL2 (ENSCWAG00000000738)	CNTLN (ENSCWAG00000000681)	ENSCWAG00000000663	BNC2 (ENSCWAG00000000651)	CCDC171 (ENSCWAG00000000635)	PSIP1 (ENSCWAG00000000604)	SNAPC3 (ENSCWAG00000000564)	TTC39B (ENSCWAG00000000168)	FREM1 (ENSCWAG00000000026)	CER1 (ENSCWAG00000000010)	ZDHHC21 (ENSCWAG00000000006)	NFIB (ENSCWAG00000021849) ##22	MPDZ (ENSCWAG00000021809)	LURAP1L (ENSCWAG00000021784)	TYRP1 (ENSCWAG00000021775)	PTPRD (ENSCWAG00000021420)	DMAC1 (ENSCWAG00000021335)	KDM4C (ENSCWAG00000021287)	GLDC (ENSCWAG00000021210)	UHRF2 (ENSCWAG00000021187)	ENSCWAG00000021178	IL33 (ENSCWAG00000021170)	ENSCWAG00000021159	KIAA2026 (ENSCWAG00000021140)	MLANA (ENSCWAG00000021120)	ERMP1 (ENSCWAG00000021102)	RIC1 (ENSCWAG00000021078)
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT00940000160529	ENSGT00440000034932	ENSGT00940000174448	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT01030000235336	ENSGT01030000235123	ENSGT00940000167408	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Chiroptera	ANCESTRAL SPECIES	40	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Microchiroptera	ANCESTRAL SPECIES	36	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Greater horseshoe bat	MODERN SPECIES	3	PLIN2 (ENSRFEG00010008729)	HAUS6 (ENSRFEG00010008787)	RRAGA (ENSRFEG00010008891)	SAXO1 (ENSRFEG00010008917)	ADAMTSL1 (ENSRFEG00010009043)	SH3GL2 (ENSRFEG00010009214)	CNTLN (ENSRFEG00010009257)	BNC2 (ENSRFEG00010009307)	CCDC171 (ENSRFEG00010009460)	ENSRFEG00010009522	SNAPC3 (ENSRFEG00010009780)	TTC39B (ENSRFEG00010009842)	FREM1 (ENSRFEG00010010458)	CER1 (ENSRFEG00010010664)	ZDHHC21 (ENSRFEG00010010717)	NFIB (ENSRFEG00010010838) ##22	MPDZ (ENSRFEG00010011615)	LURAP1L (ENSRFEG00010012161)	TYRP1 (ENSRFEG00010012208)	ENSRFEG00010012417	PTPRD (ENSRFEG00010012473)	DMAC1 (ENSRFEG00010012840)	ENSRFEG00010012856	KDM4C (ENSRFEG00010012878)	GLDC (ENSRFEG00010013019)	UHRF2 (ENSRFEG00010013711)	ENSRFEG00010013772	IL33 (ENSRFEG00010013826)	ENSRFEG00010013891	ENSRFEG00010013907	KIAA2026 (ENSRFEG00010013980)
Microbat	MODERN SPECIES	1016												TTC39B (ENSMLUG00000016611)	FREM1 (ENSMLUG00000016591)	CER1 (ENSMLUG00000016586)	ZDHHC21 (ENSMLUG00000016581)	NFIB (ENSMLUG00000000241) ##22	MPDZ (ENSMLUG00000004842)	LURAP1L (ENSMLUG00000007228)	TYRP1 (ENSMLUG00000007211)	ENSMLUG00000003277	ENSMLUG00000022350
Megabat	MODERN SPECIES	1249																NFIB (ENSPVAG00000007629) ##22
Equus	ANCESTRAL SPECIES	37	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00940000154847.j	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110.a	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Donkey	MODERN SPECIES	15	HAUS6 (ENSEASG00005019247)	RRAGA (ENSEASG00005023970)	SAXO1 (ENSEASG00005019269)	ADAMTSL1 (ENSEASG00005019273)	SH3GL2 (ENSEASG00005019277)	ENSEASG00005019283	CNTLN (ENSEASG00005019290)	BNC2 (ENSEASG00005019302)	CCDC171 (ENSEASG00005019311)	PSIP1 (ENSEASG00005019322)	SNAPC3 (ENSEASG00005019324)	TTC39B (ENSEASG00005019326)	FREM1 (ENSEASG00005019331)	CER1 (ENSEASG00005024797)	ZDHHC21 (ENSEASG00005019341)	NFIB (ENSEASG00005019346) ##22	MPDZ (ENSEASG00005019366)	LURAP1L (ENSEASG00005031483)	TYRP1 (ENSEASG00005019393)	PTPRD (ENSEASG00005010959)	ENSEASG00005010725	DMAC1 (ENSEASG00005010719)	ENSEASG00005026087	KDM4C (ENSEASG00005010714)	GLDC (ENSEASG00005010707)	UHRF2 (ENSEASG00005010699)	TPD52L3 (ENSEASG00005036119)	IL33 (ENSEASG00005010691)	ENSEASG00005029347	KIAA2026 (ENSEASG00005010685)	MLANA (ENSEASG00005028588)
Horse	MODERN SPECIES	15	ADAMTSL1 (ENSECAG00000015972)	SH3GL2 (ENSECAG00000009922)	ENSECAG00000037460	CNTLN (ENSECAG00000020007)	BNC2 (ENSECAG00000017503)	CCDC171 (ENSECAG00000009424)	PSIP1 (ENSECAG00000012666)	SNAPC3 (ENSECAG00000006422)	ENSECAG00000037681	ENSECAG00000048402	TTC39B (ENSECAG00000024552)	ENSECAG00000009605	FREM1 (ENSECAG00000015567)	CER1 (ENSECAG00000014945)	ZDHHC21 (ENSECAG00000014502)	NFIB (ENSECAG00000024578) ##22	MPDZ (ENSECAG00000008445)	LURAP1L (ENSECAG00000008425)	TYRP1 (ENSECAG00000009440)	ENSECAG00000014453	ENSECAG00000044470	PTPRD (ENSECAG00000009864)	ENSECAG00000052035	ENSECAG00000009849	KDM4C (ENSECAG00000024063)	GLDC (ENSECAG00000002389)	UHRF2 (ENSECAG00000013985)	ENSECAG00000042096	IL33 (ENSECAG00000010475)	RANBP6 (ENSECAG00000006243)	KIAA2026 (ENSECAG00000006216)
Carnivora	ANCESTRAL SPECIES	18	ENSGT00940000160529	ENSGT00440000034932	ENSGT00940000174448	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT01030000235336	ENSGT01030000235123	ENSGT00940000167408	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT01060000249305	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Felidae	ANCESTRAL SPECIES	16	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00940000174448	ENSGT00390000005844.a.b	ENSGT00940000167408	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT01090000260175	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT01060000249305	ENSGT00390000011483	ENSGT00390000009531
Cat	MODERN SPECIES	244	SAXO1 (ENSFCAG00000004841)	ADAMTSL1 (ENSFCAG00000004840)	ENSFCAG00000031200	SH3GL2 (ENSFCAG00000004584)	CNTLN (ENSFCAG00000014219)	BNC2 (ENSFCAG00000027700)	ENSFCAG00000029809	CCDC171 (ENSFCAG00000000682)	PSIP1 (ENSFCAG00000028662)	SNAPC3 (ENSFCAG00000003173)	TTC39B (ENSFCAG00000014061)	FREM1 (ENSFCAG00000004349)	CER1 (ENSFCAG00000043135)	ENSFCAG00000038305	ZDHHC21 (ENSFCAG00000006708)	NFIB (ENSFCAG00000008473) ##22	MPDZ (ENSFCAG00000011491)	LURAP1L (ENSFCAG00000023143)	TYRP1 (ENSFCAG00000019011)	PTPRD (ENSFCAG00000024457)	DMAC1 (ENSFCAG00000039645)	ENSFCAG00000043969	KDM4C (ENSFCAG00000008249)	GLDC (ENSFCAG00000000440)	UHRF2 (ENSFCAG00000026987)	TPD52L3 (ENSFCAG00000004165)	IL33 (ENSFCAG00000009049)	ENSFCAG00000041956	KIAA2026 (ENSFCAG00000026234)	MLANA (ENSFCAG00000032990)	ENSFCAG00000049075
Panthera	ANCESTRAL SPECIES	11	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00940000174448	ENSGT00390000005844.a.b	ENSGT00940000167408	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT01090000260175	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT01060000249305	ENSGT00390000011483	ENSGT00390000009531
Tiger	DUPLICATION
Tiger	MODERN SPECIES	588	SAXO1 (ENSPTIG00000016509)	ADAMTSL1 (ENSPTIG00000017390)	SH3GL2 (ENSPTIG00000008377)	CNTLN (ENSPTIG00000009406)	ENSPTIG00000007093	BNC2 (ENSPTIG00000011574)	ENSPTIG00000011934	CCDC171 (ENSPTIG00000012503)	PSIP1 (ENSPTIG00000015257)	SNAPC3 (ENSPTIG00000017166)	TTC39B (ENSPTIG00000018264)	FREM1 (ENSPTIG00000021453)	CER1 (ENSPTIG00000014020)	ZDHHC21 (ENSPTIG00000014725)	ENSPTIG00000014888 ##22	ENSPTIG00000016099 ##22	MPDZ (ENSPTIG00000021963)	LURAP1L (ENSPTIG00000017232)	TYRP1 (ENSPTIG00000017613)	PTPRD (ENSPTIG00000019873)	DMAC1 (ENSPTIG00000008291)	KDM4C (ENSPTIG00000008735)	ENSPTIG00000021643	GLDC (ENSPTIG00000005559)	ENSPTIG00000011035	UHRF2 (ENSPTIG00000011559)	TPD52L3 (ENSPTIG00000012957)	IL33 (ENSPTIG00000013529)	ENSPTIG00000014453	KIAA2026 (ENSPTIG00000015139)	MLANA (ENSPTIG00000017552)
Tiger	MODERN SPECIES	588	RRAGA (ENSPTIG00000006849)	SAXO1 (ENSPTIG00000016509)	ADAMTSL1 (ENSPTIG00000017390)	SH3GL2 (ENSPTIG00000008377)	CNTLN (ENSPTIG00000009406)	ENSPTIG00000007093	BNC2 (ENSPTIG00000011574)	ENSPTIG00000011934	CCDC171 (ENSPTIG00000012503)	PSIP1 (ENSPTIG00000015257)	SNAPC3 (ENSPTIG00000017166)	TTC39B (ENSPTIG00000018264)	FREM1 (ENSPTIG00000021453)	CER1 (ENSPTIG00000014020)	ZDHHC21 (ENSPTIG00000014725)	ENSPTIG00000014888 ##22	ENSPTIG00000016099 ##22	MPDZ (ENSPTIG00000021963)	LURAP1L (ENSPTIG00000017232)	TYRP1 (ENSPTIG00000017613)	PTPRD (ENSPTIG00000019873)	DMAC1 (ENSPTIG00000008291)	KDM4C (ENSPTIG00000008735)	ENSPTIG00000021643	GLDC (ENSPTIG00000005559)	ENSPTIG00000011035	UHRF2 (ENSPTIG00000011559)	TPD52L3 (ENSPTIG00000012957)	IL33 (ENSPTIG00000013529)	ENSPTIG00000014453	KIAA2026 (ENSPTIG00000015139)
Panthera_a	ANCESTRAL SPECIES	60	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00940000174448	ENSGT00390000005844.a.b	ENSGT00940000167408	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT01090000260175	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT01060000249305	ENSGT00390000011483	ENSGT00390000009531
lion	MODERN SPECIES	13	RRAGA (ENSPLOG00000007764)	SAXO1 (ENSPLOG00000007710)	ADAMTSL1 (ENSPLOG00000007398)	SH3GL2 (ENSPLOG00000007300)	CNTLN (ENSPLOG00000007270)	ENSPLOG00000007241	BNC2 (ENSPLOG00000007214)	CCDC171 (ENSPLOG00000007150)	PSIP1 (ENSPLOG00000007038)	SNAPC3 (ENSPLOG00000006993)	TTC39B (ENSPLOG00000006788)	FREM1 (ENSPLOG00000006548)	CER1 (ENSPLOG00000006515)	ZDHHC21 (ENSPLOG00000006492)	ENSPLOG00000006467	NFIB (ENSPLOG00000006109) ##22	MLANA (ENSPLOG00000005874)	KIAA2026 (ENSPLOG00000005840)	ENSPLOG00000005809	IL33 (ENSPLOG00000005762)	TPD52L3 (ENSPLOG00000005730)	UHRF2 (ENSPLOG00000005717)	GLDC (ENSPLOG00000005598)	KDM4C (ENSPLOG00000005468)	DMAC1 (ENSPLOG00000005410)	PTPRD (ENSPLOG00000022133)	TYRP1 (ENSPLOG00000021962)	LURAP1L (ENSPLOG00000021948)	MPDZ (ENSPLOG00000021010)	ENSPLOG00000020743	IFNE (ENSPLOG00000020717)
leopard	DUPLICATION
leopard	MODERN SPECIES	65	SAXO1 (ENSPPRG00000018241)	ADAMTSL1 (ENSPPRG00000017489)	SH3GL2 (ENSPPRG00000014326)	CNTLN (ENSPPRG00000014202)	ENSPPRG00000021053	BNC2 (ENSPPRG00000013553)	ENSPPRG00000013453	CCDC171 (ENSPPRG00000012907)	PSIP1 (ENSPPRG00000012404)	SNAPC3 (ENSPPRG00000012176)	TTC39B (ENSPPRG00000011978)	FREM1 (ENSPPRG00000010436)	CER1 (ENSPPRG00000008223)	ZDHHC21 (ENSPPRG00000008191)	ENSPPRG00000008174 ##22	ENSPPRG00000007963 ##22	MPDZ (ENSPPRG00000006676)	LURAP1L (ENSPPRG00000003119)	TYRP1 (ENSPPRG00000002966)	PTPRD (ENSPPRG00000002526)	DMAC1 (ENSPPRG00000024190)	ENSPPRG00000024221
leopard	MODERN SPECIES	65	RRAGA (ENSPPRG00000021236)	SAXO1 (ENSPPRG00000018241)	ADAMTSL1 (ENSPPRG00000017489)	SH3GL2 (ENSPPRG00000014326)	CNTLN (ENSPPRG00000014202)	ENSPPRG00000021053	BNC2 (ENSPPRG00000013553)	ENSPPRG00000013453	CCDC171 (ENSPPRG00000012907)	PSIP1 (ENSPPRG00000012404)	SNAPC3 (ENSPPRG00000012176)	TTC39B (ENSPPRG00000011978)	FREM1 (ENSPPRG00000010436)	CER1 (ENSPPRG00000008223)	ZDHHC21 (ENSPPRG00000008191)	ENSPPRG00000008174 ##22	ENSPPRG00000007963 ##22	MPDZ (ENSPPRG00000006676)	LURAP1L (ENSPPRG00000003119)	TYRP1 (ENSPPRG00000002966)	PTPRD (ENSPPRG00000002526)	DMAC1 (ENSPPRG00000024190)	ENSPPRG00000024221
Caniformia	ANCESTRAL SPECIES	16	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00940000174448	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT01060000249305	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Canidae	ANCESTRAL SPECIES	9	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00950000185213	ENSGT00950000185182	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000170703	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT01060000249305	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000153322.B
Canis_lupus	ANCESTRAL SPECIES	15	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00950000185213	ENSGT00950000185182	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708.c	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000170703	ENSGT00390000011838.c	ENSGT00390000018344.k.a.a	ENSGT00390000009786.u.a.a.b	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000013040.h	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00950000182922.a.a.a.b.b.b.b.d.a	ENSGT00940000163110
Dingo	MODERN SPECIES	366	ENSCAFG00020012896	SH3GL2 (ENSCAFG00020012892)	ENSCAFG00020012874	ENSCAFG00020012861	ENSCAFG00020012834	BNC2 (ENSCAFG00020012831)	ENSCAFG00020012807	ENSCAFG00020012801	ENSCAFG00020012797	PSIP1 (ENSCAFG00020012699)	SNAPC3 (ENSCAFG00020012694)	TTC39B (ENSCAFG00020012365)	FREM1 (ENSCAFG00020012330)	CER1 (ENSCAFG00020012315)	ZDHHC21 (ENSCAFG00020012310)	NFIB (ENSCAFG00020012292) ##22	ENSCAFG00020012267	ENSCAFG00020012263	ENSCAFG00020012246	LURAP1L (ENSCAFG00020012235)	TYRP1 (ENSCAFG00020012219)	ENSCAFG00020012197	ENSCAFG00020012154	ENSCAFG00020012115	ENSCAFG00020012101	PTPRD (ENSCAFG00020011926)	DMAC1 (ENSCAFG00020011907)	ENSCAFG00020011905	KDM4C (ENSCAFG00020011753)	ENSCAFG00020011702	GLDC (ENSCAFG00020011544)
Dog	MODERN SPECIES	2	HAUS6 (ENSCAFG00845014208)	RRAGA (ENSCAFG00845014185)	SAXO1 (ENSCAFG00845014141)	ENSCAFG00845014115	ADAMTSL1 (ENSCAFG00845013926)	SH3GL2 (ENSCAFG00845013834)	CNTLN (ENSCAFG00845013467)	BNC2 (ENSCAFG00845013048)	CCDC171 (ENSCAFG00845012549)	ENSCAFG00845012431	ENSCAFG00845012408	TTC39B (ENSCAFG00845011800)	FREM1 (ENSCAFG00845011452)	CER1 (ENSCAFG00845011372)	ZDHHC21 (ENSCAFG00845011296)	NFIB (ENSCAFG00845010942) ##22	MPDZ (ENSCAFG00845009080)	LURAP1L (ENSCAFG00845008832)	TYRP1 (ENSCAFG00845008780)	ENSCAFG00845008733	MED8 (ENSCAFG00845008705)	ENSCAFG00845008576	ENSCAFG00845028174	PTPRD (ENSCAFG00845026437)	DMAC1 (ENSCAFG00845026094)	KDM4C (ENSCAFG00845025468)	ENSCAFG00845025338	GLDC (ENSCAFG00845024762)	UHRF2 (ENSCAFG00845024233)	ENSCAFG00845024141	TPD52L3 (ENSCAFG00845024119)
Red fox	MODERN SPECIES	36	RRAGA (ENSVVUG00000000604)	SAXO1 (ENSVVUG00000000588)	ENSVVUG00000000571	ADAMTSL1 (ENSVVUG00000000485)	SH3GL2 (ENSVVUG00000000404)	CNTLN (ENSVVUG00000000301)	BNC2 (ENSVVUG00000000069)	CCDC171 (ENSVVUG00000022879)	ENSVVUG00000022868	ENSVVUG00000022866	SNAPC3 (ENSVVUG00000022862)	TTC39B (ENSVVUG00000022857)	FREM1 (ENSVVUG00000022843)	CER1 (ENSVVUG00000022841)	ZDHHC21 (ENSVVUG00000022834)	NFIB (ENSVVUG00000022820) ##22	MPDZ (ENSVVUG00000020800)	ENSVVUG00000020699	LURAP1L (ENSVVUG00000020697)	TYRP1 (ENSVVUG00000020691)	ENSVVUG00000020682	ENSVVUG00000020675	ENSVVUG00000020670	ENSVVUG00000020659	ENSVVUG00000020650	PTPRD (ENSVVUG00000020612)	ENSVVUG00000020606	DMAC1 (ENSVVUG00000020600)	ENSVVUG00000020592	KDM4C (ENSVVUG00000020590)	GLDC (ENSVVUG00000020355)
Caniformia_b	ANCESTRAL SPECIES	12	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00940000174448	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT01060000249305	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Mustelinae	ANCESTRAL SPECIES	98	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00940000174448	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804
Ferret	MODERN SPECIES	277	ADAMTSL1 (ENSMPUG00000003963)	ENSMPUG00000003984	SH3GL2 (ENSMPUG00000003993)	ENSMPUG00000018479	CNTLN (ENSMPUG00000004017)	BNC2 (ENSMPUG00000004030)	CCDC171 (ENSMPUG00000004038)	PSIP1 (ENSMPUG00000004058)	SNAPC3 (ENSMPUG00000004067)	ENSMPUG00000004072	TTC39B (ENSMPUG00000004077)	ENSMPUG00000004084	ENSMPUG00000004106	ZDHHC21 (ENSMPUG00000004119)	ENSMPUG00000004147	NFIB (ENSMPUG00000004152) ##22	ENSMPUG00000004166	ENSMPUG00000004173	MPDZ (ENSMPUG00000004191)	ENSMPUG00000018481	LURAP1L (ENSMPUG00000004219)	TYRP1 (ENSMPUG00000004224)
American mink	MODERN SPECIES	296													ENSNVIG00000019214	CER1 (ENSNVIG00000019207)	ZDH21 (ENSNVIG00000019180)	NFIB (ENSNVIG00000019097) ##22	MPDZ (ENSNVIG00000018126)	LUR1L (ENSNVIG00000018058)	TYRP1 (ENSNVIG00000017995)
Ursidae	ANCESTRAL SPECIES	6	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.h	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT01060000249305	ENSGT00390000011483	ENSGT00390000009531
Giant Panda	MODERN SPECIES	17	HAUS6 (ENSAMEG00000002777)	RRAGA (ENSAMEG00000030176)	SAXO1 (ENSAMEG00000014021)	ADAMTSL1 (ENSAMEG00000010811)	SH3GL2 (ENSAMEG00000010823)	CNTLN (ENSAMEG00000026276)	BNC2 (ENSAMEG00000012362)	CCDC171 (ENSAMEG00000002081)	PSIP1 (ENSAMEG00000002039)	SNAPC3 (ENSAMEG00000002018)	ENSAMEG00000030269	TTC39B (ENSAMEG00000001933)	FREM1 (ENSAMEG00000001889)	CER1 (ENSAMEG00000001883)	ZDHHC21 (ENSAMEG00000001866)	NFIB (ENSAMEG00000001820) ##22	MPDZ (ENSAMEG00000001732)	LURAP1L (ENSAMEG00000003127)	TYRP1 (ENSAMEG00000003109)	PTPRD (ENSAMEG00000013806)	DMAC1 (ENSAMEG00000028926)	ENSAMEG00000026849	KDM4C (ENSAMEG00000000360)	GLDC (ENSAMEG00000015836)	UHRF2 (ENSAMEG00000015792)	ENSAMEG00000020096	IL33 (ENSAMEG00000005773)	ENSAMEG00000028659	KIAA2026 (ENSAMEG00000000945)	MLANA (ENSAMEG00000028034)
Ursus	ANCESTRAL SPECIES	166	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804.h
Polar bear	MODERN SPECIES	163	HAUS6 (ENSUMAG00000017141)	RRAGA (ENSUMAG00000017178)	SAXO1 (ENSUMAG00000017184)	ENSUMAG00000017219	ENSUMAG00000017257	SH3GL2 (ENSUMAG00000017265)	CNTLN (ENSUMAG00000017286)	BNC2 (ENSUMAG00000017376)	CCDC171 (ENSUMAG00000017455)	PSIP1 (ENSUMAG00000017500)	SNAPC3 (ENSUMAG00000017506)	TTC39B (ENSUMAG00000017507)	FREM1 (ENSUMAG00000017516)	CER1 (ENSUMAG00000017560)	ZDHHC21 (ENSUMAG00000017564)	NFIB (ENSUMAG00000017572) ##22	MPDZ (ENSUMAG00000017885)	LURAP1L (ENSUMAG00000019888)	TYRP1 (ENSUMAG00000019891)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	3788																ENSUAMG00000007789 ##22
American black bear	DUPLICATION
American black bear	MODERN SPECIES	8874																ENSUAMG00000001211 ##22
American black bear	MODERN SPECIES	1474																ENSUAMG00000006125 ##22
Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT01060000248998	ENSGT01030000235336	ENSGT00940000167408	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Tree shrew	MODERN SPECIES	2375																NFIB (ENSTBEG00000001947) ##22
Glires	ANCESTRAL SPECIES	9	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Lagomorpha	ANCESTRAL SPECIES	68	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161430	ENSGT00390000000375
Rabbit	MODERN SPECIES		PLIN2 (ENSOCUG00000012244)	HAUS6 (ENSOCUG00000003507)	RRAGA (ENSOCUG00000003506)	SAXO1 (ENSOCUG00000012362)	ADAMTSL1 (ENSOCUG00000004895)	SH3GL2 (ENSOCUG00000001183)	CNTLN (ENSOCUG00000002551)	BNC2 (ENSOCUG00000004460)	CCDC171 (ENSOCUG00000009327)	PSIP1 (ENSOCUG00000009319)	SNAPC3 (ENSOCUG00000009315)	TTC39B (ENSOCUG00000010656)	FREM1 (ENSOCUG00000010379)	CER1 (ENSOCUG00000010374)	ZDHHC21 (ENSOCUG00000010367)	NFIB (ENSOCUG00000004249) ##22	ENSOCUG00000033352	ENSOCUG00000031288	MPDZ (ENSOCUG00000004401)	LURAP1L (ENSOCUG00000004226)	TYRP1 (ENSOCUG00000004221)	ENSOCUG00000005565	ENSOCUG00000038133	ENSOCUG00000037326	ENSOCUG00000037042	PTPRD (ENSOCUG00000000847)	ENSOCUG00000027888	DMAC1 (ENSOCUG00000000982)	ENSOCUG00000026913	ENSOCUG00000031695	KDM4C (ENSOCUG00000006819)
Pika	MODERN SPECIES	4647																NFIB (ENSOPRG00000000687) ##22	ENSOPRG00000000683
Rodentia	ANCESTRAL SPECIES	9	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Marmotini	ANCESTRAL SPECIES	1	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839.k	ENSGT00390000002955
Alpin marmot	MODERN SPECIES	83	SAXO1 (ENSMMMG00000006694)	ENSMMMG00000006707	ADAMTSL1 (ENSMMMG00000006719)	ENSMMMG00000006805	SH3GL2 (ENSMMMG00000006807)	CNTLN (ENSMMMG00000006867)	BNC2 (ENSMMMG00000006931)	CCDC171 (ENSMMMG00000007048)	PSIP1 (ENSMMMG00000007110)	SNAPC3 (ENSMMMG00000007194)	ENSMMMG00000007221	TTC39B (ENSMMMG00000007232)	FREM1 (ENSMMMG00000007262)	CER1 (ENSMMMG00000007339)	ZDHHC21 (ENSMMMG00000007346)	NFIB (ENSMMMG00000007378) ##22	ENSMMMG00000007584	ENSMMMG00000007595	MPDZ (ENSMMMG00000007606)
Marmotini_b	ANCESTRAL SPECIES	118	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839.k	ENSGT00390000002955
Squirrel	MODERN SPECIES	139											PSIP1 (ENSSTOG00000002200)	SNAPC3 (ENSSTOG00000002194)	TTC39B (ENSSTOG00000000975)	FREM1 (ENSSTOG00000003243)	ZDHHC21 (ENSSTOG00000003224)	NFIB (ENSSTOG00000002234) ##22	MPDZ (ENSSTOG00000003629)	LURAP1L (ENSSTOG00000023721)	TYRP1 (ENSSTOG00000003656)	ENSSTOG00000021089	PTPRD (ENSSTOG00000002347)	DMAC1 (ENSSTOG00000033947)	ENSSTOG00000033567	KDM4C (ENSSTOG00000006263)	GLDC (ENSSTOG00000015771)	UHRF2 (ENSSTOG00000015760)	IL33 (ENSSTOG00000033488)	RANBP6 (ENSSTOG00000019572)	KIAA2026 (ENSSTOG00000025240)	MLANA (ENSSTOG00000033340)	ERMP1 (ENSSTOG00000028566)
Arctic ground squirrel	MODERN SPECIES	200								BNC2 (ENSUPAG00010019192)	CCDC171 (ENSUPAG00010019240)	PSIP1 (ENSUPAG00010019272)	SNAPC3 (ENSUPAG00010019316)	TTC39B (ENSUPAG00010019335)	FREM1 (ENSUPAG00010019362)	CER1 (ENSUPAG00010019407)	ZDHHC21 (ENSUPAG00010019414)	NFIB (ENSUPAG00010019428) ##22	MPDZ (ENSUPAG00010019555)
Eurasian red squirrel	MODERN SPECIES	6	ADAMTSL1 (ENSSVLG00005021790)	ENSSVLG00005021741	SH3GL2 (ENSSVLG00005021671)	CNTLN (ENSSVLG00005021621)	ENSSVLG00005021593	BNC2 (ENSSVLG00005021503)	CCDC171 (ENSSVLG00005021247)	PSIP1 (ENSSVLG00005021148)	SNAPC3 (ENSSVLG00005021073)	ENSSVLG00005021059	TTC39B (ENSSVLG00005020698)	ENSSVLG00005020502	ENSSVLG00005020385	CER1 (ENSSVLG00005020347)	ZDHHC21 (ENSSVLG00005020275)	NFIB (ENSSVLG00005019808) ##22	ENSSVLG00005019293	MPDZ (ENSSVLG00005019125)	LURAP1L (ENSSVLG00005019004)	TYRP1 (ENSSVLG00005018842)	ENSSVLG00005018805	ENSSVLG00005018792	PTPRD (ENSSVLG00005016434)	ENSSVLG00005016242	DMAC1 (ENSSVLG00005016213)	ENSSVLG00005025401	KDM4C (ENSSVLG00005025382)	ENSSVLG00005025367	ENSSVLG00005025356	GLDC (ENSSVLG00005025320)	UHRF2 (ENSSVLG00005025301)
Hystricomorpha	ANCESTRAL SPECIES	46	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243.jb	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161430
Naked mole-rat female	MODERN SPECIES	3	CNTLN (ENSHGLG00000017883)	BNC2 (ENSHGLG00000009182)	ENSHGLG00000048786	CCDC171 (ENSHGLG00000005804)	ENSHGLG00000037696	ENSHGLG00000009693	PSIP1 (ENSHGLG00000010046)	ENSHGLG00000033501	ENSHGLG00000018545	ENSHGLG00000034380	ENSHGLG00000017979	ENSHGLG00000017971	ENSHGLG00000039407	CER1 (ENSHGLG00000017945)	ENSHGLG00000050241	NFIB (ENSHGLG00000010895) ##22	ENSHGLG00000005821	MPDZ (ENSHGLG00000016510)	ENSHGLG00000031927	ENSHGLG00000016836	LURAP1L (ENSHGLG00000046955)	ENSHGLG00000015404	ENSHGLG00000008769	ENSHGLG00000012054	ENSHGLG00000021417	PTPRD (ENSHGLG00000011342)	ENSHGLG00000033356	ENSHGLG00000044985	ENSHGLG00000036074	KDM4C (ENSHGLG00000015722)	ENSHGLG00000050764
Hystricomorpha_a	ANCESTRAL SPECIES	53	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243.jb	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161430
Guinea pig	MODERN SPECIES	21	HAUS6 (ENSCPOG00000008053)	RRAGA (ENSCPOG00000008047)	ENSCPOG00000031962	ADAMTSL1 (ENSCPOG00000003783)	SH3GL2 (ENSCPOG00000015380)	ENSCPOG00000032617	BNC2 (ENSCPOG00000006163)	CCDC171 (ENSCPOG00000012939)	ENSCPOG00000032438	PSIP1 (ENSCPOG00000005095)	SNAPC3 (ENSCPOG00000005081)	TTC39B (ENSCPOG00000004887)	FREM1 (ENSCPOG00000011267)	CER1 (ENSCPOG00000011943)	ZDHHC21 (ENSCPOG00000032754)	NFIB (ENSCPOG00000003925) ##22	MPDZ (ENSCPOG00000008962)	LURAP1L (ENSCPOG00000037440)	TYRP1 (ENSCPOG00000014078)	PTPRD (ENSCPOG00000003625)	DMAC1 (ENSCPOG00000033539)	KDM4C (ENSCPOG00000004700)	GLDC (ENSCPOG00000004844)	UHRF2 (ENSCPOG00000004838)	IL33 (ENSCPOG00000030316)	RANBP6 (ENSCPOG00000005398)	KIAA2026 (ENSCPOG00000013437)	ENSCPOG00000039570	MLANA (ENSCPOG00000013436)	ERMP1 (ENSCPOG00000013432)	RIC1 (ENSCPOG00000013425)
Hystricomorpha_b	ANCESTRAL SPECIES	71	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243.jb	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161430
Long-tailed chinchilla	MODERN SPECIES	141	PLIN2 (ENSCLAG00000006627)	HAUS6 (ENSCLAG00000015951)	RRAGA (ENSCLAG00000017884)	SAXO1 (ENSCLAG00000015777)	ADAMTSL1 (ENSCLAG00000016263)	SH3GL2 (ENSCLAG00000012375)	ENSCLAG00000010823	BNC2 (ENSCLAG00000009846)	CCDC171 (ENSCLAG00000012226)	PSIP1 (ENSCLAG00000013790)	ENSCLAG00000010768	TTC39B (ENSCLAG00000010926)	FREM1 (ENSCLAG00000006808)	CER1 (ENSCLAG00000010883)	ZDHHC21 (ENSCLAG00000009678)	NFIB (ENSCLAG00000012227) ##22	MPDZ (ENSCLAG00000007286)	ENSCLAG00000014441	LURAP1L (ENSCLAG00000013531)	TYRP1 (ENSCLAG00000007960)	PTPRD (ENSCLAG00000005730)	DMAC1 (ENSCLAG00000007861)	KDM4C (ENSCLAG00000006468)	GLDC (ENSCLAG00000005815)	UHRF2 (ENSCLAG00000004646)	IL33 (ENSCLAG00000008507)	RANBP6 (ENSCLAG00000017716)	KIAA2026 (ENSCLAG00000010624)	MLANA (ENSCLAG00000005918)	ERMP1 (ENSCLAG00000004784)	RIC1 (ENSCLAG00000008085)
Degu	DUPLICATION
Degu	MODERN SPECIES	85	ENSODEG00000020135	ENSODEG00000015675	ENSODEG00000014643	ADAMTSL1 (ENSODEG00000014029)	SH3GL2 (ENSODEG00000014695)	CNTLN (ENSODEG00000014534)	ENSODEG00000014452	BNC2 (ENSODEG00000014630)	CCDC171 (ENSODEG00000013824)	ENSODEG00000014203	SNAPC3 (ENSODEG00000013737)	TTC39B (ENSODEG00000014143)	ENSODEG00000020161	ZDHHC21 (ENSODEG00000014991)	ENSODEG00000020126 ##22	ENSODEG00000014648 ##22	MPDZ (ENSODEG00000015544)	LURAP1L (ENSODEG00000014930)	TYRP1 (ENSODEG00000014586)	PTPRD (ENSODEG00000015677)	DMAC1 (ENSODEG00000014207)	ENSODEG00000013683	ENSODEG00000015220	ENSODEG00000013868	ENSODEG00000013887	GLDC (ENSODEG00000013489)	UHRF2 (ENSODEG00000013603)
Degu	MODERN SPECIES	85	RRAGA (ENSODEG00000020270)	ENSODEG00000020135	ENSODEG00000015675	ENSODEG00000014643	ADAMTSL1 (ENSODEG00000014029)	SH3GL2 (ENSODEG00000014695)	CNTLN (ENSODEG00000014534)	ENSODEG00000014452	BNC2 (ENSODEG00000014630)	CCDC171 (ENSODEG00000013824)	ENSODEG00000014203	SNAPC3 (ENSODEG00000013737)	TTC39B (ENSODEG00000014143)	ENSODEG00000020161	ZDHHC21 (ENSODEG00000014991)	ENSODEG00000020126 ##22	ENSODEG00000014648 ##22	MPDZ (ENSODEG00000015544)	LURAP1L (ENSODEG00000014930)	TYRP1 (ENSODEG00000014586)	PTPRD (ENSODEG00000015677)	DMAC1 (ENSODEG00000014207)	ENSODEG00000013683	ENSODEG00000015220	ENSODEG00000013868	ENSODEG00000013887	GLDC (ENSODEG00000013489)	UHRF2 (ENSODEG00000013603)
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Kangaroo rat	MODERN SPECIES	372	ENSDORG00000025399	ENSDORG00000024977	ENSDORG00000027313	Sh3gl2 (ENSDORG00000000622)	ENSDORG00000028767	Bnc2 (ENSDORG00000008840)	Ccdc171 (ENSDORG00000005630)	Psip1 (ENSDORG00000004907)	ENSDORG00000004905	ENSDORG00000024125	Ttc39b (ENSDORG00000014589)	Frem1 (ENSDORG00000014455)	ENSDORG00000023435	Cer1 (ENSDORG00000014454)	Zdhhc21 (ENSDORG00000026832)	Nfib (ENSDORG00000004277) ##22	ENSDORG00000006362
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a ##17	ENSGT01030000234519.e.a.a.a.a.b ##17	ENSGT00940000153241.A	ENSGT00390000013287	ENSGT00940000162569.b	ENSGT00940000158510	ENSGT00940000165714
Muroidea	ANCESTRAL SPECIES	1	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a ##17	ENSGT01030000234519.e.a.a.a.a.b ##17	ENSGT00940000153241.A	ENSGT00390000013287	ENSGT00940000162569.b	ENSGT00940000158510
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a ##17	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084	ENSGT00940000160778	ENSGT00940000160949
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a ##17	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084	ENSGT00940000160778	ENSGT00390000003140.B
Cricetinae	ANCESTRAL SPECIES	21	ENSGT00940000169234	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00940000169573	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a ##17	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084	ENSGT00940000160778	ENSGT00390000003140.B
Chinese hamster chok1gshd	MODERN SPECIES	111	Plin2 (ENSCGRG00001016267)	Saxo1 (ENSCGRG00001017278)	Adamtsl1 (ENSCGRG00001004761)	Sh3gl2 (ENSCGRG00001022450)	Cntln (ENSCGRG00001005303)	ENSCGRG00001006130	Bnc2 (ENSCGRG00001021192)	Ccdc171 (ENSCGRG00001012100)	Psip1 (ENSCGRG00001018077)	Snapc3 (ENSCGRG00001021052)	Ttc39b (ENSCGRG00001023116)	ENSCGRG00001006351	Frem1 (ENSCGRG00001012504)	Cer1 (ENSCGRG00001014082)	Zdhhc21 (ENSCGRG00001015866)	Nfib (ENSCGRG00001018402) ##22	Mpdz (ENSCGRG00001023758)	ENSCGRG00001017051	Lurap1l (ENSCGRG00001018238)	Tyrp1 (ENSCGRG00001020616)	Ptprd (ENSCGRG00001001921)	Dmac1 (ENSCGRG00001012676)	ENSCGRG00001003314	Kdm4c (ENSCGRG00001014973)	Frmd3 (ENSCGRG00001020520)	ENSCGRG00001022505	2310002L09Rik (ENSCGRG00001024634)	Rasef (ENSCGRG00001001324)	ENSCGRG00001001298	ENSCGRG00001003137	Tle1 (ENSCGRG00001010603) ##17
Golden Hamster	MODERN SPECIES	740					Cntln (ENSMAUG00000016827)	Bnc2 (ENSMAUG00000017038)	Ccdc171 (ENSMAUG00000013269)	Psip1 (ENSMAUG00000014312)	ENSMAUG00000008531	ENSMAUG00000002025	Ttc39b (ENSMAUG00000008949)	ENSMAUG00000011212	Frem1 (ENSMAUG00000014922)	Cer1 (ENSMAUG00000013311)	Zdhhc21 (ENSMAUG00000000495)	Nfib (ENSMAUG00000007632) ##22	ENSMAUG00000003146	ENSMAUG00000005222	Lurap1l (ENSMAUG00000014887)	Tyrp1 (ENSMAUG00000017874)	ENSMAUG00000006579
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a ##17	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084	ENSGT00940000160778	ENSGT00940000160949
Northern American deer mouse	MODERN SPECIES	11	Saxo1 (ENSPEMG00000000040)	Adamtsl1 (ENSPEMG00000005320)	Sh3gl2 (ENSPEMG00000010691)	ENSPEMG00000012875	Cntln (ENSPEMG00000013809)	Bnc2 (ENSPEMG00000006553)	ENSPEMG00000026637	Ccdc171 (ENSPEMG00000009589)	Psip1 (ENSPEMG00000015309)	Snapc3 (ENSPEMG00000015671)	Ttc39b (ENSPEMG00000017249)	ENSPEMG00000028674	Frem1 (ENSPEMG00000007771)	Cer1 (ENSPEMG00000013498)	Zdhhc21 (ENSPEMG00000011202)	Nfib (ENSPEMG00000015036) ##22	Mpdz (ENSPEMG00000002221)	Lurap1l (ENSPEMG00000028913)	ENSPEMG00000026523	Tyrp1 (ENSPEMG00000020081)	Ptprd (ENSPEMG00000017837)	Dmac1 (ENSPEMG00000004174)	ENSPEMG00000014283	Kdm4c (ENSPEMG00000009673)	Frmd3 (ENSPEMG00000018030)	2310002L09Rik (ENSPEMG00000011897)	Rasef (ENSPEMG00000002797)	ENSPEMG00000026811	Tle1 (ENSPEMG00000009903) ##17	Megf9 (ENSPEMG00000027304)	ENSPEMG00000003929
Prairie vole	MODERN SPECIES	1	ENSMOCG00000014772	ENSMOCG00000023023	Saxo1 (ENSMOCG00000016102)	Adamtsl1 (ENSMOCG00000000817)	Sh3gl2 (ENSMOCG00000022289)	Cntln (ENSMOCG00000019830)	ENSMOCG00000008451	Bnc2 (ENSMOCG00000015132)	Ccdc171 (ENSMOCG00000016262)	Psip1 (ENSMOCG00000003043)	ENSMOCG00000014331	Ttc39b (ENSMOCG00000005864)	Frem1 (ENSMOCG00000018942)	Cer1 (ENSMOCG00000022515)	Zdhhc21 (ENSMOCG00000015320)	Nfib (ENSMOCG00000021986) ##22	ENSMOCG00000020921	ENSMOCG00000018271	Lurap1l (ENSMOCG00000015966)	Tyrp1 (ENSMOCG00000015263)	ENSMOCG00000004135	Ptprd (ENSMOCG00000001990)	ENSMOCG00000015211	ENSMOCG00000012575	ENSMOCG00000013894	Frmd3 (ENSMOCG00000008934)	2310002L09Rik (ENSMOCG00000022037)	Rasef (ENSMOCG00000000943)	Tle1 (ENSMOCG00000017405) ##17	ENSMOCG00000019378	Megf9 (ENSMOCG00000018603)
Murinae	ANCESTRAL SPECIES	2	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a ##17	ENSGT00740000117018	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084	ENSGT00940000160778
Mus	ANCESTRAL SPECIES	3	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577	ENSGT00520000057958	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a ##17	ENSGT00740000117018	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084	ENSGT00940000160778
Mus_A	ANCESTRAL SPECIES	3	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577.e	ENSGT00520000057958.a	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a ##17	ENSGT00740000117018.a.b	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084	ENSGT00940000160778
Mus_B	ANCESTRAL SPECIES	5	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706.u	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577.e	ENSGT00520000057958.a	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a ##17	ENSGT00740000117018.a.b	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084	ENSGT00940000160778
Mouse	MODERN SPECIES	13	Plin2 (ENSMUSG00000028494)	Haus6 (ENSMUSG00000038047)	Rraga (ENSMUSG00000070934)	Saxo1 (ENSMUSG00000028492)	Adamtsl1 (ENSMUSG00000066113)	Sh3gl2 (ENSMUSG00000028488)	Cntln (ENSMUSG00000038070)	Bnc2 (ENSMUSG00000028487)	Ccdc171 (ENSMUSG00000052407)	Psip1 (ENSMUSG00000028484)	Snapc3 (ENSMUSG00000028483)	Ttc39b (ENSMUSG00000038172)	Frem1 (ENSMUSG00000059049)	Cer1 (ENSMUSG00000038192)	Zdhhc21 (ENSMUSG00000028403)	Nfib (ENSMUSG00000008575) ##22	Mpdz (ENSMUSG00000028402)	Lurap1l (ENSMUSG00000048706)	Tyrp1 (ENSMUSG00000005994)	Ptprd (ENSMUSG00000028399)	Dmac1 (ENSMUSG00000028398)	Kdm4c (ENSMUSG00000028397)	Frmd3 (ENSMUSG00000049122)	2310002L09Rik (ENSMUSG00000028396)	Gm11756 (ENSMUSG00000093962)	Gm13871 (ENSMUSG00000096333)	Gm11757 (ENSMUSG00000096750)	Gm11758 (ENSMUSG00000096530)	Rasef (ENSMUSG00000043003)	Gm428 (ENSMUSG00000095341)	Gm11239 (ENSMUSG00000095048)
Mus_C	ANCESTRAL SPECIES	2	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706.u	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000158577.e	ENSGT00520000057958.a	ENSGT00940000159488	ENSGT01030000234519.e.a.a.a.a.a ##17	ENSGT00740000117018.a.b	ENSGT00740000117018.b	ENSGT00940000161177	ENSGT00950000183190.a.b.a.a	ENSGT00940000158084
Steppe mouse	MODERN SPECIES	3323		Haus6 (ENSMSIG00000021584)	Rraga (ENSMSIG00000021592)	Saxo1 (ENSMSIG00000021596)	Adamtsl1 (ENSMSIG00000021606)	ENSMSIG00000021744	Cntln (ENSMSIG00000021797)	Bnc2 (ENSMSIG00000021983)	Ccdc171 (ENSMSIG00000022141)	Psip1 (ENSMSIG00000022367)	Snapc3 (ENSMSIG00000022439)	Ttc39b (ENSMSIG00000022488)	Frem1 (ENSMSIG00000022742)	Cer1 (ENSMSIG00000022937)	Zdhhc21 (ENSMSIG00000022950)	Nfib (ENSMSIG00000023003) ##22
spretus	MODERN SPECIES	13	Plin2 (MGP_SPRETEiJ_G0027098)	Haus6 (MGP_SPRETEiJ_G0027097)	Rraga (MGP_SPRETEiJ_G0027096)	Saxo1 (MGP_SPRETEiJ_G0027095)	Adamtsl1 (MGP_SPRETEiJ_G0027094)	MGP_SPRETEiJ_G0027093	Cntln (MGP_SPRETEiJ_G0027092)	Bnc2 (MGP_SPRETEiJ_G0027091)	Ccdc171 (MGP_SPRETEiJ_G0027090)	Psip1 (MGP_SPRETEiJ_G0027089)	Snapc3 (MGP_SPRETEiJ_G0027088)	Ttc39b (MGP_SPRETEiJ_G0027087)	Frem1 (MGP_SPRETEiJ_G0027086)	Cer1 (MGP_SPRETEiJ_G0027085)	Zdhhc21 (MGP_SPRETEiJ_G0027084)	Nfib (MGP_SPRETEiJ_G0027083) ##22	Mpdz (MGP_SPRETEiJ_G0027082)	Lurap1l (MGP_SPRETEiJ_G0027081)	Tyrp1 (MGP_SPRETEiJ_G0027080)	MGP_SPRETEiJ_G0027079	Dmac1 (MGP_SPRETEiJ_G0027078)	Kdm4c (MGP_SPRETEiJ_G0027077)	Frmd3 (MGP_SPRETEiJ_G0027076)	MGP_SPRETEiJ_G0027075	Tle1 (MGP_SPRETEiJ_G0027074) ##17	MGP_SPRETEiJ_G0027073	Megf9 (MGP_SPRETEiJ_G0027072)	Cdk5rap2 (MGP_SPRETEiJ_G0027071)	Brinp1 (MGP_SPRETEiJ_G0027070)	Tlr4 (MGP_SPRETEiJ_G0027069)	Trim32 (MGP_SPRETEiJ_G0027068)
Ryukyu mouse	MODERN SPECIES	13	Plin2 (MGP_CAROLIEiJ_G0026133)	MGP_CAROLIEiJ_G0026132	Rraga (MGP_CAROLIEiJ_G0026131)	Saxo1 (MGP_CAROLIEiJ_G0026130)	Adamtsl1 (MGP_CAROLIEiJ_G0026129)	Sh3gl2 (MGP_CAROLIEiJ_G0026128)	Cntln (MGP_CAROLIEiJ_G0026127)	Bnc2 (MGP_CAROLIEiJ_G0026126)	Ccdc171 (MGP_CAROLIEiJ_G0026125)	Psip1 (MGP_CAROLIEiJ_G0026124)	Snapc3 (MGP_CAROLIEiJ_G0026123)	Ttc39b (MGP_CAROLIEiJ_G0026122)	Frem1 (MGP_CAROLIEiJ_G0026121)	Cer1 (MGP_CAROLIEiJ_G0026120)	Zdhhc21 (MGP_CAROLIEiJ_G0026119)	Nfib (MGP_CAROLIEiJ_G0026118) ##22	Mpdz (MGP_CAROLIEiJ_G0026117)	Lurap1l (MGP_CAROLIEiJ_G0026116)	Tyrp1 (MGP_CAROLIEiJ_G0026115)	Ptprd (MGP_CAROLIEiJ_G0026114)	Dmac1 (MGP_CAROLIEiJ_G0026113)	Kdm4c (MGP_CAROLIEiJ_G0026112)	Frmd3 (MGP_CAROLIEiJ_G0026111)	2310002L09Rik (MGP_CAROLIEiJ_G0026110)	MGP_CAROLIEiJ_G0026109	Tle1 (MGP_CAROLIEiJ_G0026108) ##17	Gm11232 (MGP_CAROLIEiJ_G0026107)	Megf9 (MGP_CAROLIEiJ_G0026106)	Cdk5rap2 (MGP_CAROLIEiJ_G0026105)	Brinp1 (MGP_CAROLIEiJ_G0026104)	Tlr4 (MGP_CAROLIEiJ_G0026103)
Shrew mouse	MODERN SPECIES	19	Plin2 (MGP_PahariEiJ_G0028471)	Haus6 (MGP_PahariEiJ_G0028470)	Rraga (MGP_PahariEiJ_G0028469)	Saxo1 (MGP_PahariEiJ_G0028468)	Adamtsl1 (MGP_PahariEiJ_G0028467)	MGP_PahariEiJ_G0028466	Cntln (MGP_PahariEiJ_G0028465)	Bnc2 (MGP_PahariEiJ_G0028464)	Ccdc171 (MGP_PahariEiJ_G0028463)	Psip1 (MGP_PahariEiJ_G0028462)	Snapc3 (MGP_PahariEiJ_G0028461)	Ttc39b (MGP_PahariEiJ_G0028460)	Frem1 (MGP_PahariEiJ_G0028459)	Cer1 (MGP_PahariEiJ_G0028458)	Zdhhc21 (MGP_PahariEiJ_G0028457)	Nfib (MGP_PahariEiJ_G0028456) ##22	MGP_PahariEiJ_G0028455	Lurap1l (MGP_PahariEiJ_G0028454)	Tyrp1 (MGP_PahariEiJ_G0028453)	Ptprd (MGP_PahariEiJ_G0028452)	Dmac1 (MGP_PahariEiJ_G0028451)	Kdm4c (MGP_PahariEiJ_G0028450)	Frmd3 (MGP_PahariEiJ_G0028449)	2310002L09Rik (MGP_PahariEiJ_G0028448)	Rasef (MGP_PahariEiJ_G0028447)	Tle1 (MGP_PahariEiJ_G0028446) ##17	MGP_PahariEiJ_G0028445	Megf9 (MGP_PahariEiJ_G0028444)	Cdk5rap2 (MGP_PahariEiJ_G0028443)	Brinp1 (MGP_PahariEiJ_G0028442)	Tlr4 (MGP_PahariEiJ_G0028441)
Rat	MODERN SPECIES	15	Saxo1 (ENSRNOG00000048197)	Adamtsl1 (ENSRNOG00000006956)	Sh3gl2 (ENSRNOG00000006761)	Cntln (ENSRNOG00000043151)	Bnc2 (ENSRNOG00000006553)	LOC120102904 (ENSRNOG00000067108)	ENSRNOG00000064241	AABR07049060.1 (ENSRNOG00000033445)	Psip1 (ENSRNOG00000011498)	Snapc3 (ENSRNOG00000010825)	AABR07049043.1 (ENSRNOG00000047278)	Ttc39b (ENSRNOG00000042603)	Frem1 (ENSRNOG00000022309)	Cer1 (ENSRNOG00000010518)	Zdhhc21 (ENSRNOG00000010484)	Nfib (ENSRNOG00000009795) ##22	Mpdz (ENSRNOG00000007894)	LOC120102902 (ENSRNOG00000065656)	RGD1565987 (ENSRNOG00000062659)	Lurap1l (ENSRNOG00000033740)	Tyrp1 (ENSRNOG00000029318)	ENSRNOG00000065765	RGD1563375 (ENSRNOG00000065031)	Snurf-ps2 (ENSRNOG00000022595)	Ptprd (ENSRNOG00000005711)	Dmac1 (ENSRNOG00000023946)	Kdm4c (ENSRNOG00000006644)	AABR07048770.1 (ENSRNOG00000031344)	Frmd3 (ENSRNOG00000006503)	LOC298139 (ENSRNOG00000045733)	Rasef (ENSRNOG00000024190)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1459												Ttc39b (ENSNGAG00000019817)	Frem1 (ENSNGAG00000018085)	Cer1 (ENSNGAG00000015175)	Zdhhc21 (ENSNGAG00000021676)	Nfib (ENSNGAG00000021838) ##22	Mpdz (ENSNGAG00000022630)	Lurap1l (ENSNGAG00000018504)	Tyrp1 (ENSNGAG00000024330)	Ptprd (ENSNGAG00000011273)
Lesser Egyptian jerboa	MODERN SPECIES	66	ENSJJAG00000024102	Sh3gl2 (ENSJJAG00000017618)	ENSJJAG00000011696	ENSJJAG00000008188	ENSJJAG00000022818	Bnc2 (ENSJJAG00000004324)	ENSJJAG00000019056	Ccdc171 (ENSJJAG00000020916)	ENSJJAG00000015360	Snapc3 (ENSJJAG00000018408)	Ttc39b (ENSJJAG00000004238)	ENSJJAG00000010564	ENSJJAG00000015519	Cer1 (ENSJJAG00000023511)	Zdhhc21 (ENSJJAG00000002851)	Nfib (ENSJJAG00000013052) ##22	ENSJJAG00000010432	Mpdz (ENSJJAG00000012097)	Lurap1l (ENSJJAG00000014520)	Tyrp1 (ENSJJAG00000015009)	ENSJJAG00000010326	ENSJJAG00000023453
Primates	ANCESTRAL SPECIES	9	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00940000167408	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Strepsirrhini	ANCESTRAL SPECIES	8	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00940000167408	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930.p	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Lemuriformes	ANCESTRAL SPECIES	34	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00940000167408	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708.e	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804
Mouse lemur	MODERN SPECIES	1	RRAGA (ENSMICG00000016534)	SAXO1 (ENSMICG00000047006)	ADAMTSL1 (ENSMICG00000029970)	SH3GL2 (ENSMICG00000009761)	CNTLN (ENSMICG00000009738)	BNC2 (ENSMICG00000013669)	ENSMICG00000013656	CCDC171 (ENSMICG00000005908)	ENSMICG00000006064	PSIP1 (ENSMICG00000013923)	SNAPC3 (ENSMICG00000013886)	TTC39B (ENSMICG00000015971)	FREM1 (ENSMICG00000015934)	CER1 (ENSMICG00000001257)	ZDHHC21 (ENSMICG00000035489)	NFIB (ENSMICG00000005833) ##22	ENSMICG00000028319	MPDZ (ENSMICG00000010194)	LURAP1L (ENSMICG00000032420)	TYRP1 (ENSMICG00000017521)	ENSMICG00000031881	ENSMICG00000038393	LINGO2 (ENSMICG00000004873)	C9orf72 (ENSMICG00000004861)	MOB3B (ENSMICG00000004847)	EQTN (ENSMICG00000034150)	TEK (ENSMICG00000009269)	ENSMICG00000006418	LRRC19 (ENSMICG00000037703)	PLAA (ENSMICG00000007609)	CAAP1 (ENSMICG00000032635)
Lemuriformes_a	ANCESTRAL SPECIES	35	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708.e	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804
Greater bamboo lemur	MODERN SPECIES	1477												TTC39B (ENSPSMG00000017583)	FREM1 (ENSPSMG00000017553)	CER1 (ENSPSMG00000017509)	ZDHHC21 (ENSPSMG00000017500)	NFIB (ENSPSMG00000017453) ##22	MPDZ (ENSPSMG00000016907)	LURAP1L (ENSPSMG00000016172)	TYRP1 (ENSPSMG00000016161)
Coquerels sifaka	MODERN SPECIES	1031	RRAGA (ENSPCOG00000013740)	SAXO1 (ENSPCOG00000021103)	ADAMTSL1 (ENSPCOG00000018852)	SH3GL2 (ENSPCOG00000027654)	ENSPCOG00000028760	BNC2 (ENSPCOG00000021153)	ENSPCOG00000025026	ENSPCOG00000020527	CCDC171 (ENSPCOG00000019049)	PSIP1 (ENSPCOG00000027672)	ENSPCOG00000027201	TTC39B (ENSPCOG00000027564)	FREM1 (ENSPCOG00000027087)	CER1 (ENSPCOG00000022597)	ZDHHC21 (ENSPCOG00000015647)	NFIB (ENSPCOG00000017145) ##22	ENSPCOG00000003214	MPDZ (ENSPCOG00000024357)	LURAP1L (ENSPCOG00000022670)	ENSPCOG00000000064
Bushbaby	MODERN SPECIES	121	SAXO1 (ENSOGAG00000006354)	ENSOGAG00000016604	ENSOGAG00000016595	SH3GL2 (ENSOGAG00000013983)	CNTLN (ENSOGAG00000013973)	ENSOGAG00000032938	BNC2 (ENSOGAG00000001628)	CCDC171 (ENSOGAG00000002180)	PSIP1 (ENSOGAG00000002179)	SNAPC3 (ENSOGAG00000002175)	ENSOGAG00000028248	TTC39B (ENSOGAG00000011887)	FREM1 (ENSOGAG00000011871)	CER1 (ENSOGAG00000011870)	ZDHHC21 (ENSOGAG00000011869)	NFIB (ENSOGAG00000016282) ##22	MPDZ (ENSOGAG00000006106)	LURAP1L (ENSOGAG00000030142)	TYRP1 (ENSOGAG00000013041)	PTPRD (ENSOGAG00000007930)	KDM4C (ENSOGAG00000009288)	APEX2 (ENSOGAG00000007797)	GLDC (ENSOGAG00000026078)	UHRF2 (ENSOGAG00000010598)	TPD52L3 (ENSOGAG00000011718)	ENSOGAG00000004525	RANBP6 (ENSOGAG00000010992)	ENSOGAG00000032415	ENSOGAG00000030737	MLANA (ENSOGAG00000010986)	ERMP1 (ENSOGAG00000012020)
Haplorrhini	ANCESTRAL SPECIES	9	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Tarsier	MODERN SPECIES	6463																NFIB (ENSTSYG00000008733) ##22
Simiiformes	ANCESTRAL SPECIES	11	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Platyrrhini	ANCESTRAL SPECIES	8	ENSGT00950000183031.B.e.b.c.a	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706.m	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00390000014876	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373
Mas night monkey	MODERN SPECIES	874			BNC2 (ENSANAG00000035051)	ENSANAG00000032512	CCDC171 (ENSANAG00000038440)	ENSANAG00000026727	SNAPC3 (ENSANAG00000036004)	TTC39B (ENSANAG00000024950)	ENSANAG00000037779	ENSANAG00000021398	ENSANAG00000017079	FREM1 (ENSANAG00000032176)	CER1 (ENSANAG00000028523)	ENSANAG00000022275	ZDHHC21 (ENSANAG00000029465)	NFIB (ENSANAG00000029821) ##22	ENSANAG00000021989	MPDZ (ENSANAG00000024262)	LURAP1L (ENSANAG00000027827)	TYRP1 (ENSANAG00000022830)	PTPRD (ENSANAG00000028534)	ENSANAG00000025291
Cebidae	ANCESTRAL SPECIES	7	ENSGT00950000183031.B.e.b.c.a	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706.m	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00390000014876	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00940000167431	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Marmoset	MODERN SPECIES		CNTLN (ENSCJAG00000012600)	BNC2 (ENSCJAG00000012578)	ENSCJAG00000032216	ENSCJAG00000084170	CCDC171 (ENSCJAG00000012538)	PSIP1 (ENSCJAG00000012471)	SNAPC3 (ENSCJAG00000012442)	ENSCJAG00000082244	ENSCJAG00000083429	TTC39B (ENSCJAG00000012336)	ENSCJAG00000012327	FREM1 (ENSCJAG00000012240)	CER1 (ENSCJAG00000012238)	ZDHHC21 (ENSCJAG00000041430)	ENSCJAG00000083549	NFIB (ENSCJAG00000012155) ##22	MPDZ (ENSCJAG00000011950)	LURAP1L (ENSCJAG00000011941)	TYRP1 (ENSCJAG00000011907)	ENSCJAG00000086372	ENSCJAG00000011892	ENSCJAG00000079648	PTPRD (ENSCJAG00000011840)	DMAC1 (ENSCJAG00000079307)	ENSCJAG00000084180	KDM4C (ENSCJAG00000011746)	ENSCJAG00000075021	ENSCJAG00000083745	ENSCJAG00000079970	GLDC (ENSCJAG00000011661)	UHRF2 (ENSCJAG00000011619)
Cebidae_a	ANCESTRAL SPECIES	84	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00390000018406.j.a	ENSGT00940000154706.m	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00390000014876	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00530000063540.b.v	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Capuchin	MODERN SPECIES	532												ENSCCAG00000023522	FREM1 (ENSCCAG00000018800)	CER1 (ENSCCAG00000021183)	ZDHHC21 (ENSCCAG00000036977)	NFIB (ENSCCAG00000007805) ##22	ENSCCAG00000021632
Bolivian squirrel monkey	MODERN SPECIES	69	ENSSBOG00000034943	SH3GL2 (ENSSBOG00000032645)	CNTLN (ENSSBOG00000034763)	BNC2 (ENSSBOG00000023250)	ENSSBOG00000028687	CCDC171 (ENSSBOG00000026669)	ENSSBOG00000031033	PSIP1 (ENSSBOG00000033737)	ENSSBOG00000035820	ENSSBOG00000033785	TTC39B (ENSSBOG00000035178)	HPF1 (ENSSBOG00000025298)	FREM1 (ENSSBOG00000027449)	CER1 (ENSSBOG00000015623)	ZDHHC21 (ENSSBOG00000031063)	NFIB (ENSSBOG00000032376) ##22	MPDZ (ENSSBOG00000032969)	LURAP1L (ENSSBOG00000023028)	TYRP1 (ENSSBOG00000028887)	ENSSBOG00000019643	ENSSBOG00000033909	PTPRD (ENSSBOG00000020960)	ENSSBOG00000030559	ENSSBOG00000031698	KDM4C (ENSSBOG00000025118)	GLDC (ENSSBOG00000034257)	UHRF2 (ENSSBOG00000024260)	IL33 (ENSSBOG00000003297)	ENSSBOG00000031372	ENSSBOG00000035279	KIAA2026 (ENSSBOG00000029962)
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00950000183031.B.e.b	ENSGT01020000230346.E.s.a	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000003582.e.d.b	ENSGT00390000002626.d	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000154499.h	ENSGT00390000017970	ENSGT00390000008296.b.a.a.g	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT01020000230346.E.s.a	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706	ENSGT01100000266431	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000003582.e.d.b	ENSGT00390000002626.d	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000154499.h	ENSGT00390000017970	ENSGT00390000008296.b.a.a.g	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT01020000230346.E.s.a	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706	ENSGT01100000266431	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000154499.h	ENSGT00390000017970	ENSGT00390000008296.b.a.a.g	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Vervet Monkey	MODERN SPECIES	3	HAUS6 (ENSCSAG00000009348)	SAXO1 (ENSCSAG00000009331)	ADAMTSL1 (ENSCSAG00000009320)	ENSCSAG00000018483	SH3GL2 (ENSCSAG00000009307)	CNTLN (ENSCSAG00000009297)	BNC2 (ENSCSAG00000009282)	ENSCSAG00000009275	CCDC171 (ENSCSAG00000009259)	PSIP1 (ENSCSAG00000009243)	SNAPC3 (ENSCSAG00000009226)	TTC39B (ENSCSAG00000009217)	FREM1 (ENSCSAG00000009200)	CER1 (ENSCSAG00000009180)	ZDHHC21 (ENSCSAG00000009169)	NFIB (ENSCSAG00000009158) ##22	ENSCSAG00000018485	MPDZ (ENSCSAG00000009137)	LURAP1L (ENSCSAG00000009100)	TYRP1 (ENSCSAG00000009081)	PTPRD (ENSCSAG00000009046)	DMAC1 (ENSCSAG00000009013)	KDM4C (ENSCSAG00000008997)	GLDC (ENSCSAG00000008978)	UHRF2 (ENSCSAG00000008957)	TPD52L3 (ENSCSAG00000018487)	IL33 (ENSCSAG00000008936)	RANBP6 (ENSCSAG00000018489)	KIAA2026 (ENSCSAG00000008912)	MLANA (ENSCSAG00000008907)	ERMP1 (ENSCSAG00000008897)
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706	ENSGT01100000266431	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00950000183010.a.a.a.b.a.a.b.a.b	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000154499.h	ENSGT00390000017970	ENSGT00390000008296.b.a.a.g	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Macaca	ANCESTRAL SPECIES	10	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706	ENSGT01100000266431	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00950000183010.a.a.a.b.a.a.b.a.b	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000141074.f.b	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a.g	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839
Macaca_a	ANCESTRAL SPECIES	10	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00950000183010.a.a.a.b.a.a.b.a.b	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000141074.f.b	ENSGT00390000003343	ENSGT00390000009328.c.a	ENSGT00390000002127.sb	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a.g	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483
Crab-eating macaque	MODERN SPECIES	6	SAXO1 (ENSMFAG00000000158)	ADAMTSL1 (ENSMFAG00000042640)	SH3GL2 (ENSMFAG00000043791)	CNTLN (ENSMFAG00000038531)	BNC2 (ENSMFAG00000036895)	ENSMFAG00000036515	CCDC171 (ENSMFAG00000007272)	PSIP1 (ENSMFAG00000045606)	SNAPC3 (ENSMFAG00000039519)	TTC39B (ENSMFAG00000002246)	ENSMFAG00000059525	FREM1 (ENSMFAG00000002956)	CER1 (ENSMFAG00000037928)	ENSMFAG00000030041	ZDHHC21 (ENSMFAG00000038466)	NFIB (ENSMFAG00000037052) ##22	MPDZ (ENSMFAG00000032679)	ENSMFAG00000057135	LURAP1L (ENSMFAG00000040734)	TYRP1 (ENSMFAG00000046179)	ENSMFAG00000062292	ENSMFAG00000028377	ENSMFAG00000049672	ENSMFAG00000049031	PTPRD (ENSMFAG00000031323)	ENSMFAG00000044606	DMAC1 (ENSMFAG00000044806)	ENSMFAG00000014434	ENSMFAG00000014550	KDM4C (ENSMFAG00000003778)	GLDC (ENSMFAG00000039599)
Rhesus	MODERN SPECIES	6	ADAMTSL1 (ENSMMUG00000044658)	SH3GL2 (ENSMMUG00000011704)	ENSMMUG00000053129	CNTLN (ENSMMUG00000023448)	BNC2 (ENSMMUG00000001141)	ENSMMUG00000044363	CCDC171 (ENSMMUG00000016731)	ENSMMUG00000058883	PSIP1 (ENSMMUG00000002224)	SNAPC3 (ENSMMUG00000016189)	TTC39B (ENSMMUG00000013466)	FREM1 (ENSMMUG00000008128)	CER1 (ENSMMUG00000012428)	ZDHHC21 (ENSMMUG00000012426)	ENSMMUG00000056734	NFIB (ENSMMUG00000014697) ##22	MPDZ (ENSMMUG00000019388)	LURAP1L (ENSMMUG00000013290)	TYRP1 (ENSMMUG00000062815)	ENSMMUG00000058123	ENSMMUG00000056551	ENSMMUG00000049668	ENSMMUG00000065258	ENSMMUG00000061442	ENSMMUG00000055769	ENSMMUG00000057534	PTPRD (ENSMMUG00000006952)	ENSMMUG00000019570	DMAC1 (ENSMMUG00000050277)	ENSMMUG00000056670	KDM4C (ENSMMUG00000015985)
Pig-tailed macaque	MODERN SPECIES	152	ADAMTSL1 (ENSMNEG00000039848)	ENSMNEG00000042732	SH3GL2 (ENSMNEG00000032599)	CNTLN (ENSMNEG00000040917)	BNC2 (ENSMNEG00000040884)	ENSMNEG00000043142	CCDC171 (ENSMNEG00000042615)	PSIP1 (ENSMNEG00000030633)	ENSMNEG00000014509	SNAPC3 (ENSMNEG00000002686)	TTC39B (ENSMNEG00000029192)	FREM1 (ENSMNEG00000034773)	CER1 (ENSMNEG00000034249)	ZDHHC21 (ENSMNEG00000033895)	ENSMNEG00000005084	NFIB (ENSMNEG00000039065) ##22	ENSMNEG00000035388	MPDZ (ENSMNEG00000040228)	ENSMNEG00000035930	LURAP1L (ENSMNEG00000029041)	TYRP1 (ENSMNEG00000035543)	ENSMNEG00000036773	PTPRD (ENSMNEG00000036506)	ENSMNEG00000030132	DMAC1 (ENSMNEG00000044495)	KDM4C (ENSMNEG00000029324)	ENSMNEG00000031093	ENSMNEG00000033793	GLDC (ENSMNEG00000032546)	UHRF2 (ENSMNEG00000034080)	TPD52L3 (ENSMNEG00000033267)
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT01020000230346.E.s.a	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00950000183010.a.a.a.b.a.a.b.a.b	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000154499.h	ENSGT00390000017970	ENSGT00390000008296.b.a.a.g	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Olive baboon	MODERN SPECIES	4	CNTLN (ENSPANG00000025233)	ENSPANG00000049593	ENSPANG00000045248	BNC2 (ENSPANG00000025234)	ENSPANG00000025235	CCDC171 (ENSPANG00000025236)	ENSPANG00000041882	PSIP1 (ENSPANG00000025230)	SNAPC3 (ENSPANG00000025229)	ENSPANG00000047398	ENSPANG00000038536	FREM1 (ENSPANG00000025228)	CER1 (ENSPANG00000025225)	ENSPANG00000031770	ZDHHC21 (ENSPANG00000042206)	NFIB (ENSPANG00000025203) ##22	MPDZ (ENSPANG00000025205)	LURAP1L (ENSPANG00000025206)	TYRP1 (ENSPANG00000025207)	ENSPANG00000040619	ENSPANG00000017355	ENSPANG00000050311	ENSPANG00000048068	ENSPANG00000039593	ENSPANG00000046642	PTPRD (ENSPANG00000025208)	DMAC1 (ENSPANG00000025209)	ENSPANG00000034870	ENSPANG00000025201	ENSPANG00000043745	ENSPANG00000040907
Cercopithecinae_d	ANCESTRAL SPECIES	34	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706	ENSGT01100000266120	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00950000183010.a.a.a.b.a.a.b.a.b	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00900000143826	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000154499.h	ENSGT00390000017970	ENSGT00390000008296.b.a.a.g	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531
Sooty mangabey	MODERN SPECIES	629	ADAMTSL1 (ENSCATG00000042482)	SH3GL2 (ENSCATG00000004445)	CNTLN (ENSCATG00000004826)	BNC2 (ENSCATG00000039175)	ENSCATG00000019771	CCDC171 (ENSCATG00000039627)	PSIP1 (ENSCATG00000037840)	ENSCATG00000018868	SNAPC3 (ENSCATG00000042572)	TTC39B (ENSCATG00000032662)	FREM1 (ENSCATG00000034977)	CER1 (ENSCATG00000012176)	ZDHHC21 (ENSCATG00000041835)	ENSCATG00000019515	ENSCATG00000042024	NFIB (ENSCATG00000035506) ##22	MPDZ (ENSCATG00000030031)	ENSCATG00000042089	LURAP1L (ENSCATG00000042208)	TYRP1 (ENSCATG00000044923)	ENSCATG00000040285	ENSCATG00000039554	PTPRD (ENSCATG00000011010)	DMAC1 (ENSCATG00000024312)	KDM4C (ENSCATG00000044738)	ENSCATG00000041153	GLDC (ENSCATG00000040028)	UHRF2 (ENSCATG00000044392)	TPD52L3 (ENSCATG00000040180)	IL33 (ENSCATG00000041628)	ENSCATG00000006496
Drill	MODERN SPECIES	1051					BNC2 (ENSMLEG00000010467)	ENSMLEG00000029849	CCDC171 (ENSMLEG00000037661)	PSIP1 (ENSMLEG00000001440)	ENSMLEG00000027945	SNAPC3 (ENSMLEG00000030316)	TTC39B (ENSMLEG00000041037)	FREM1 (ENSMLEG00000039451)	CER1 (ENSMLEG00000041007)	ENSMLEG00000027784	ZDHHC21 (ENSMLEG00000035467)	NFIB (ENSMLEG00000034055) ##22
Rhinopithecus	ANCESTRAL SPECIES	482													ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000003582.e.d.b	ENSGT00390000002626.d	ENSGT00940000155586.B	ENSGT00940000154277.a.b.b	ENSGT00530000063790.b	ENSGT00940000155804
Black snub-nosed monkey	MODERN SPECIES	205													FREM1 (ENSRBIG00000030336)	CER1 (ENSRBIG00000029742)	ZDHHC21 (ENSRBIG00000040746)	NFIB (ENSRBIG00000039693) ##22	ENSRBIG00000033804	ENSRBIG00000034572	MPDZ (ENSRBIG00000042415)	ENSRBIG00000035073	LURAP1L (ENSRBIG00000045009)	TYRP1 (ENSRBIG00000028075)	ENSRBIG00000019503
Golden snub-nosed monkey	MODERN SPECIES	2940																NFIB (ENSRROG00000039354) ##22	ENSRROG00000039541
Hominoidea	ANCESTRAL SPECIES	23	ENSGT00950000183031.B.e.b	ENSGT01020000230346.E.s.a	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706.o	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000003582.e.d.b	ENSGT00390000002626.d	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000154499.h	ENSGT00390000017970	ENSGT00390000008296.b.a.a.g	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483
Gibbon	MODERN SPECIES	10	ENSNLEG00000033664	SH3GL2 (ENSNLEG00000017566)	CNTLN (ENSNLEG00000017575)	BNC2 (ENSNLEG00000017578)	ENSNLEG00000017580	CCDC171 (ENSNLEG00000017581)	ENSNLEG00000032210	PSIP1 (ENSNLEG00000017585)	SNAPC3 (ENSNLEG00000017591)	TTC39B (ENSNLEG00000017600)	ENSNLEG00000033891	ENSNLEG00000031209	FREM1 (ENSNLEG00000017613)	CER1 (ENSNLEG00000031098)	ZDHHC21 (ENSNLEG00000017622)	NFIB (ENSNLEG00000017626) ##22	MPDZ (ENSNLEG00000017632)	ENSNLEG00000032253	LURAP1L (ENSNLEG00000017661)	TYRP1 (ENSNLEG00000017662)	ENSNLEG00000034539	PTPRD (ENSNLEG00000017664)	ENSNLEG00000028620	ENSNLEG00000027866	KDM4C (ENSNLEG00000017670)	ENSNLEG00000018987	ENSNLEG00000032646	ENSNLEG00000030924	GLDC (ENSNLEG00000009146)	UHRF2 (ENSNLEG00000009135)	IL33 (ENSNLEG00000009115)
Hominidae	ANCESTRAL SPECIES	10	ENSGT00950000183031.B.e.b	ENSGT01020000230346.E.s.a	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706.o	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000003582.e.d.b	ENSGT00390000002626.d	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00940000154499.h	ENSGT00390000017970.n.a	ENSGT00390000008296.b.a.a.g	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483
Orangutan	MODERN SPECIES	22	RRAGA (ENSPPYG00000019196)	SAXO1 (ENSPPYG00000019197)	ADAMTSL1 (ENSPPYG00000019199)	SH3GL2 (ENSPPYG00000040517)	CNTLN (ENSPPYG00000019201)	BNC2 (ENSPPYG00000019203)	ENSPPYG00000019204	CCDC171 (ENSPPYG00000019205)	PSIP1 (ENSPPYG00000019206)	SNAPC3 (ENSPPYG00000019207)	TTC39B (ENSPPYG00000019208)	ENSPPYG00000034152	FREM1 (ENSPPYG00000019211)	CER1 (ENSPPYG00000019212)	ZDHHC21 (ENSPPYG00000019213)	NFIB (ENSPPYG00000019214) ##22	MPDZ (ENSPPYG00000019216)	ENSPPYG00000039071	LURAP1L (ENSPPYG00000019218)	TYRP1 (ENSPPYG00000019219)	PTPRD (ENSPPYG00000019220)	DMAC1 (ENSPPYG00000019221)	KDM4C (ENSPPYG00000019222)	GLDC (ENSPPYG00000019225)	UHRF2 (ENSPPYG00000019227)	TPD52L3 (ENSPPYG00000019229)	IL33 (ENSPPYG00000019231)	ENSPPYG00000032896	KIAA2026 (ENSPPYG00000029402)	MLANA (ENSPPYG00000019233)	ERMP1 (ENSPPYG00000019234)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00950000183031.B.e.b	ENSGT01020000230346.E.s.a	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706.o	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000003582.e.d.b	ENSGT00390000002626.d	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343.a	ENSGT00940000154930	ENSGT00940000154499.h	ENSGT00390000017970.n.a	ENSGT00390000008296.b.a.a.g	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483
Gorilla	MODERN SPECIES	22	CNTLN (ENSGGOG00000025720)	ENSGGOG00000043261	BNC2 (ENSGGOG00000004532)	ENSGGOG00000003264	CCDC171 (ENSGGOG00000012017)	ENSGGOG00000027119	PSIP1 (ENSGGOG00000016152)	SNAPC3 (ENSGGOG00000006757)	TTC39B (ENSGGOG00000005786)	ENSGGOG00000012170	ENSGGOG00000042433	ENSGGOG00000038071	FREM1 (ENSGGOG00000014708)	CER1 (ENSGGOG00000001552)	ZDHHC21 (ENSGGOG00000022090)	NFIB (ENSGGOG00000022134) ##22	ENSGGOG00000028472	MPDZ (ENSGGOG00000005514)	ENSGGOG00000022145	LURAP1L (ENSGGOG00000002038)	TYRP1 (ENSGGOG00000016261)	PTPRD (ENSGGOG00000016241)	ENSGGOG00000039445	DMAC1 (ENSGGOG00000025305)	KDM4C (ENSGGOG00000000506)	ENSGGOG00000028250	GLDC (ENSGGOG00000004507)	UHRF2 (ENSGGOG00000008853)	TPD52L3 (ENSGGOG00000042302)	ENSGGOG00000038683	IL33 (ENSGGOG00000001464)
Homo/Pan group	ANCESTRAL SPECIES	27	ENSGT00950000183031.B.e.b	ENSGT01020000230346.E.s.a	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706.o	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000003582.e.d.b	ENSGT00390000002626.d	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343.a	ENSGT00940000154930	ENSGT00940000154499.h	ENSGT00390000017970.n.a	ENSGT00390000008296.b.a.a.g	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483
Human	MODERN SPECIES	21	PLIN2 (ENSG00000147872)	HAUS6 (ENSG00000147874)	RRAGA (ENSG00000155876)	SAXO1 (ENSG00000155875)	ADAMTSL1 (ENSG00000178031)	SH3GL2 (ENSG00000107295)	CNTLN (ENSG00000044459)	BNC2 (ENSG00000173068)	CCDC171 (ENSG00000164989)	PSIP1 (ENSG00000164985)	SNAPC3 (ENSG00000164975)	TTC39B (ENSG00000155158)	FREM1 (ENSG00000164946)	CER1 (ENSG00000147869)	ZDHHC21 (ENSG00000175893)	NFIB (ENSG00000147862) ##22	MPDZ (ENSG00000107186)	LURAP1L (ENSG00000153714)	TYRP1 (ENSG00000107165)	PTPRD (ENSG00000153707)	DMAC1 (ENSG00000137038)	KDM4C (ENSG00000107077)	GLDC (ENSG00000178445)	UHRF2 (ENSG00000147854)	TPD52L3 (ENSG00000170777)	IL33 (ENSG00000137033)	RANBP6 (ENSG00000137040)	MLANA (ENSG00000120215)	KIAA2026 (ENSG00000183354)	ERMP1 (ENSG00000099219)	RIC1 (ENSG00000107036)
Pan	ANCESTRAL SPECIES	26	ENSGT00940000156243	ENSGT00940000154429.r	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00410000028916	ENSGT00390000007924	ENSGT00940000154706.o	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000154706.p	ENSGT00940000153201.j.k.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000003582.e.d.b	ENSGT00390000002626.d	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343.a	ENSGT00390000018145.cb.a.a.b	ENSGT00940000154930	ENSGT00940000154499.h	ENSGT00390000017970.n.a	ENSGT00390000008296.b.a.a.g	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767
Chimpanzee	MODERN SPECIES	22	ADAMTSL1 (ENSPTRG00000020794)	SH3GL2 (ENSPTRG00000020792)	CNTLN (ENSPTRG00000020791)	BNC2 (ENSPTRG00000020789)	LINC03041 (ENSPTRG00000029336)	CCDC171 (ENSPTRG00000020787)	ENSPTRG00000050939	PSIP1 (ENSPTRG00000020786)	SNAPC3 (ENSPTRG00000020785)	TTC39B (ENSPTRG00000020784)	ENSPTRG00000049865	ENSPTRG00000050528	FREM1 (ENSPTRG00000020782)	CER1 (ENSPTRG00000020781)	ZDHHC21 (ENSPTRG00000020779)	NFIB (ENSPTRG00000020777) ##22	ENSPTRG00000039179	ENSPTRG00000045557	MPDZ (ENSPTRG00000020776)	ENSPTRG00000044336	LURAP1L (ENSPTRG00000020775)	TYRP1 (ENSPTRG00000020774)	PTPRD (ENSPTRG00000020773)	DMAC1 (ENSPTRG00000049902)	ENSPTRG00000039806	ENSPTRG00000034071	KDM4C (ENSPTRG00000023432)	ENSPTRG00000045078	GLDC (ENSPTRG00000029347)	UHRF2 (ENSPTRG00000020765)	TPD52L3 (ENSPTRG00000046546)
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	22	SAXO1 (ENSPPAG00000031728)	ENSPPAG00000024728	ADAMTSL1 (ENSPPAG00000042232)	SH3GL2 (ENSPPAG00000020499)	CNTLN (ENSPPAG00000005881)	BNC2 (ENSPPAG00000037205)	CCDC171 (ENSPPAG00000042501)	PSIP1 (ENSPPAG00000030461)	SNAPC3 (ENSPPAG00000015962)	TTC39B (ENSPPAG00000029769)	ENSPPAG00000030164	ENSPPAG00000033450	FREM1 (ENSPPAG00000034460)	CER1 (ENSPPAG00000038199)	ZDHHC21 (ENSPPAG00000038407)	ENSPPAG00000030129 ##22	ENSPPAG00000008881 ##22	MPDZ (ENSPPAG00000028619)	ENSPPAG00000036271	LURAP1L (ENSPPAG00000031027)	TYRP1 (ENSPPAG00000032608)	ENSPPAG00000016213	PTPRD (ENSPPAG00000032905)	DMAC1 (ENSPPAG00000040685)	ENSPPAG00000030064	KDM4C (ENSPPAG00000042410)	ENSPPAG00000026658	ENSPPAG00000042614	ENSPPAG00000024827	GLDC (ENSPPAG00000041686)	UHRF2 (ENSPPAG00000027921)
Bonobo	MODERN SPECIES	22	ENSPPAG00000024728	ADAMTSL1 (ENSPPAG00000042232)	SH3GL2 (ENSPPAG00000020499)	CNTLN (ENSPPAG00000005881)	BNC2 (ENSPPAG00000037205)	CCDC171 (ENSPPAG00000042501)	PSIP1 (ENSPPAG00000030461)	SNAPC3 (ENSPPAG00000015962)	TTC39B (ENSPPAG00000029769)	ENSPPAG00000030164	ENSPPAG00000033450	FREM1 (ENSPPAG00000034460)	CER1 (ENSPPAG00000038199)	ZDHHC21 (ENSPPAG00000038407)	ENSPPAG00000030129 ##22	ENSPPAG00000008881 ##22	MPDZ (ENSPPAG00000028619)	ENSPPAG00000036271	LURAP1L (ENSPPAG00000031027)	TYRP1 (ENSPPAG00000032608)	ENSPPAG00000016213	PTPRD (ENSPPAG00000032905)	DMAC1 (ENSPPAG00000040685)	ENSPPAG00000030064	KDM4C (ENSPPAG00000042410)	ENSPPAG00000026658	ENSPPAG00000042614	ENSPPAG00000024827	GLDC (ENSPPAG00000041686)	UHRF2 (ENSPPAG00000027921)	TPD52L3 (ENSPPAG00000032443)
Atlantogenata	ANCESTRAL SPECIES	68	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT01030000235123	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955
Afrotheria	ANCESTRAL SPECIES	116	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373
Tenrec	MODERN SPECIES	4283																NFIB (ENSETEG00000016780) ##22
Afrotheria_a	ANCESTRAL SPECIES	118	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00950000183031.B.e.b	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706	ENSGT00390000005708	ENSGT00950000182917.a.a.b.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00940000163110	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373
Hyrax	MODERN SPECIES	3584																NFIB (ENSPCAG00000002420) ##22
Elephant	MODERN SPECIES	472	SAXO1 (ENSLAFG00000011081)	ADAMTSL1 (ENSLAFG00000011076)	SH3GL2 (ENSLAFG00000005475)	CNTLN (ENSLAFG00000007075)	ENSLAFG00000027513	ENSLAFG00000021349	BNC2 (ENSLAFG00000000476)	CCDC171 (ENSLAFG00000013490)	PSIP1 (ENSLAFG00000013878)	SNAPC3 (ENSLAFG00000013869)	TTC39B (ENSLAFG00000013786)	ENSLAFG00000028826	FREM1 (ENSLAFG00000008954)	CER1 (ENSLAFG00000014736)	ZDHHC21 (ENSLAFG00000008950)	NFIB (ENSLAFG00000000868) ##22	MPDZ (ENSLAFG00000018210)	LURAP1L (ENSLAFG00000001902)	TYRP1 (ENSLAFG00000001901)	ENSLAFG00000027855	PTPRD (ENSLAFG00000017308)	DMAC1 (ENSLAFG00000012977)	KDM4C (ENSLAFG00000013829)	GLDC (ENSLAFG00000000430)	UHRF2 (ENSLAFG00000000669)	ENSLAFG00000022756	ENSLAFG00000007786	RANBP6 (ENSLAFG00000002055)	ENSLAFG00000031413	ENSLAFG00000011137	ENSLAFG00000032095
Xenarthra	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b ##22
Armadillo	MODERN SPECIES	1775																ENSDNOG00000019957 ##22
Sloth	MODERN SPECIES	3909																NFIB (ENSCHOG00000002015) ##22
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00940000157979	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706.i	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375
Opossum	MODERN SPECIES	5	ENSMODG00000027395	SH3GL2 (ENSMODG00000014850)	ENSMODG00000040062	ENSMODG00000014860	ENSMODG00000046892	BNC2 (ENSMODG00000014900)	ENSMODG00000050120	ENSMODG00000044025	CCDC171 (ENSMODG00000014913)	PSIP1 (ENSMODG00000014943)	SNAPC3 (ENSMODG00000014956)	ENSMODG00000014967	FREM1 (ENSMODG00000014986)	CER1 (ENSMODG00000014991)	ZDHHC21 (ENSMODG00000014993)	NFIB (ENSMODG00000014999) ##22	ENSMODG00000048502	ENSMODG00000015042	LURAP1L (ENSMODG00000015046)	TYRP1 (ENSMODG00000015054)	ENSMODG00000045399	ENSMODG00000015085	ENSMODG00000043064	PTPRD (ENSMODG00000015192)	ENSMODG00000047379	ENSMODG00000015205	ENSMODG00000022955	KDM4C (ENSMODG00000015213)	GLDC (ENSMODG00000015225)	UHRF2 (ENSMODG00000015238)	ENSMODG00000022954
Marsupialia_b	ANCESTRAL SPECIES	11	ENSGT00940000157979	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706.i	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375
Tasmanian devil	MODERN SPECIES		ENSSHAG00000014793	ENSSHAG00000014655	SAXO1 (ENSSHAG00000014231)	ENSSHAG00000027232	ENSSHAG00000012335	SH3GL2 (ENSSHAG00000005065)	ENSSHAG00000013537	BNC2 (ENSSHAG00000030577)	CCDC171 (ENSSHAG00000018094)	ENSSHAG00000018023	SNAPC3 (ENSSHAG00000030080)	ENSSHAG00000017713	FREM1 (ENSSHAG00000017309)	CER1 (ENSSHAG00000017268)	ZDHHC21 (ENSSHAG00000021164)	NFIB (ENSSHAG00000030287) ##22	MPDZ (ENSSHAG00000010824)	LURAP1L (ENSSHAG00000008457)	TYRP1 (ENSSHAG00000007505)	ENSSHAG00000022556	PTPRD (ENSSHAG00000026330)	ENSSHAG00000026724	ENSSHAG00000027331	KDM4C (ENSSHAG00000008668)	GLDC (ENSSHAG00000005373)	UHRF2 (ENSSHAG00000023237)	ENSSHAG00000031943	KIAA2026 (ENSSHAG00000030776)	MLANA (ENSSHAG00000006138)	ERMP1 (ENSSHAG00000004720)	RIC1 (ENSSHAG00000000924)
Diprotodontia	ANCESTRAL SPECIES	19	ENSGT00940000157979	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706.i	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375
Diprotodontia_a	ANCESTRAL SPECIES	21	ENSGT00940000157979	ENSGT00950000182920.b.a.b.a.b	ENSGT00390000008250	ENSGT00390000007252.c	ENSGT00940000156243	ENSGT00940000160529	ENSGT00440000034932	ENSGT00390000005844.a.b	ENSGT00390000007924	ENSGT00940000154706.i	ENSGT00390000005708	ENSGT00950000182917.a.a.a.a	ENSGT00940000156990	ENSGT00530000063926.a	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00390000003343	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375
koala	MODERN SPECIES	194							BNC2 (ENSPCIG00000020267)	CCDC171 (ENSPCIG00000015388)	ENSPCIG00000015377	SNAPC3 (ENSPCIG00000015370)	TTC39B (ENSPCIG00000001439)	ENSPCIG00000001394	ENSPCIG00000036223	ENSPCIG00000001306	ZDHHC21 (ENSPCIG00000001282)	NFIB (ENSPCIG00000001226) ##22	MPDZ (ENSPCIG00000025013)	LURAP1L (ENSPCIG00000015005)	ENSPCIG00000014999	ENSPCIG00000036977
Common wonbat	MODERN SPECIES	1009	FSD1L (ENSVURG00010003544)	PLIN2 (ENSVURG00010003566)	ENSVURG00010003577	SAXO1 (ENSVURG00010003626)	ADAMTSL1 (ENSVURG00010003657)	ENSVURG00010003708	ENSVURG00010003793	BNC2 (ENSVURG00010003913)	CCDC171 (ENSVURG00010004058)	PSIP1 (ENSVURG00010004263)	SNAPC3 (ENSVURG00010004305)	ENSVURG00010004353	FREM1 (ENSVURG00010004450)	ENSVURG00010004561	ZDHHC21 (ENSVURG00010004573)	NFIB (ENSVURG00010004715) ##22	MPDZ (ENSVURG00010005019)	LURAP1L (ENSVURG00010005429)	TYRP1 (ENSVURG00010005433)	ENSVURG00010005463	PTPRD (ENSVURG00010005527)	ENSVURG00010005615	KDM4C (ENSVURG00010005641)	GLDC (ENSVURG00010005739)	UHRF2 (ENSVURG00010006652)	KIAA2026 (ENSVURG00010006687)	MLANA (ENSVURG00010006707)	ERMP1 (ENSVURG00010006720)	RIC1 (ENSVURG00010006750)	CD274 (ENSVURG00010006794)	PLGRKT (ENSVURG00010006799)
Wallaby	MODERN SPECIES	5485																NFIB (ENSMEUG00000015931) ##22
Actinopterygii	ANCESTRAL SPECIES	214															ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00940000153612.A	ENSGT00940000177384	ENSGT00550000074857	ENSGT01100000263500.b.a.a.a.a.b.b.b.a.a	ENSGT00940000160757	ENSGT00940000156061	ENSGT00940000163988	ENSGT00940000154259	ENSGT00940000154810	ENSGT00940000163785.a.b
Reedfish	MODERN SPECIES	15	gar1 (ENSECRG00000010795)	ENSECRG00000010802	ENSECRG00000010809	slc1a1 (ENSECRG00000010813)	RAP1GDS1 (ENSECRG00000010846)	tspan5b (ENSECRG00000010899)	eif4ea (ENSECRG00000010918)	metap1 (ENSECRG00000010934)	adh5 (ENSECRG00000010976)	ENSECRG00000011063	ENSECRG00000011070	ENSECRG00000011082	ENSECRG00000011096	plaa (ENSECRG00000011100)	zdhhc21 (ENSECRG00000011106)	NFIB (ENSECRG00000011118) ##22	MPDZ (ENSECRG00000011134)	ENSECRG00000011149	LURAP1L (ENSECRG00000011151)	TYRP1 (ENSECRG00000011157)	MYORG (ENSECRG00000011161)	aqp3a (ENSECRG00000011163)	ENSECRG00000011167	ENSECRG00000011172	ube2r2 (ENSECRG00000011181)	ENSECRG00000011188	ENSECRG00000011194	ela3l (ENSECRG00000011198)	ENSECRG00000011202	mtap (ENSECRG00000011205)	TOPORS (ENSECRG00000011212)
Neopterygii	ANCESTRAL SPECIES	74	ENSGT00940000154658.b	ENSGT00950000183018.b	ENSGT01030000234799	ENSGT00940000153596.A	ENSGT00940000155244.d	ENSGT00940000155341	ENSGT00390000001695	ENSGT00950000183132.C	ENSGT00530000063555.A.a.a	ENSGT00530000063506.A	ENSGT00940000153246.a.a.b	ENSGT00890000139482	ENSGT00940000158695	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00910000147694	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00390000011081.q.b	ENSGT00940000157347	ENSGT00390000017246	ENSGT00950000182938.b.b.b.a.b.a	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000158395	ENSGT01030000234625.C
Spotted gar	MODERN SPECIES	670	abca1a (ENSLOCG00000011508)	nipsnap3a (ENSLOCG00000011488)	ENSLOCG00000011477	exosc3 (ENSLOCG00000011471)	b4galt1l (ENSLOCG00000011466)	rest (ENSLOCG00000011457)	noa1 (ENSLOCG00000011439)	polr2b (ENSLOCG00000011424)	igfbp7 (ENSLOCG00000011413)	COX18 (ENSLOCG00000011403)	stra6l (ENSLOCG00000011382)	tdrd7a (ENSLOCG00000011373)	TMOD1 (ENSLOCG00000011358)	plaa (ENSLOCG00000011346)	zdhhc21 (ENSLOCG00000011340)	NFIB (ENSLOCG00000011325) ##22	BANK1 (ENSLOCG00000011321)	PPP3CA (ENSLOCG00000011303)	ENSLOCG00000011293	ENSLOCG00000018048	ENSLOCG00000018046	ENSLOCG00000018044	DDIT4L (ENSLOCG00000011286)	H2AZ1 (ENSLOCG00000011277)	mllt3 (ENSLOCG00000011259)	FOCAD (ENSLOCG00000011240)	hacd4 (ENSLOCG00000011238)	rpl34 (ENSLOCG00000011235)	ostc (ENSLOCG00000011223)	etnppl (ENSLOCG00000011208)	COL25A1 (ENSLOCG00000011197)
Osteoglossocephalai	ANCESTRAL SPECIES	76	ENSGT01030000234799	ENSGT00940000153596.A	ENSGT00940000155244.d	ENSGT00940000155341	ENSGT00390000001695	ENSGT00950000183132.C	ENSGT00530000063555.A.a.a	ENSGT00530000063506.A	ENSGT00940000157174.c	ENSGT00940000154658.b.i.b	ENSGT00940000153246.a.a.b	ENSGT00890000139482	ENSGT00940000158695	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00910000147694	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00390000011081.q.b	ENSGT00940000157347	ENSGT00390000017246	ENSGT00950000182938.b.b.b.a.b.a	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000158395	ENSGT01030000234625.C
Osteoglossiformes	ANCESTRAL SPECIES	103	ENSGT00940000154658.b.i.a	ENSGT00950000183018.b.a	ENSGT00950000183018.b.b	ENSGT01030000234799	ENSGT00940000153596.A	ENSGT00940000155244.d	ENSGT00940000155341	ENSGT00390000001695	ENSGT00950000183132.C	ENSGT00530000063555.A.a.a	ENSGT00530000063506.A	ENSGT00890000139482	ENSGT00940000158695.a	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00910000147694	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT01030000234532.B.e.a	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	20	ABCA1 (ENSSFOG00015000541)	nipsnap3a (ENSSFOG00015029636)	nipsnap3a (ENSSFOG00015000783)	ENSSFOG00015000789	exosc3 (ENSSFOG00015000848)	b4galt1l (ENSSFOG00015033204)	rest (ENSSFOG00015000910)	noa1 (ENSSFOG00015000914)	polr2b (ENSSFOG00015000924)	igfbp7 (ENSSFOG00015029555)	COX18 (ENSSFOG00015001028)	tdrd7a (ENSSFOG00015001037)	TMOD1 (ENSSFOG00015001049)	plaa (ENSSFOG00015001104)	zdhhc21 (ENSSFOG00015001172)	NFIB (ENSSFOG00015001197) ##22	BANK1 (ENSSFOG00015001267)	PPP3CA (ENSSFOG00015001288)	DDIT4L (ENSSFOG00015001392)	mllt3 (ENSSFOG00015001413)	ENSSFOG00015001514	hacd4 (ENSSFOG00015030533)	SLC24A2 (ENSSFOG00015001558)	rpl34 (ENSSFOG00015001627)	clta (ENSSFOG00015031319)	gne (ENSSFOG00015001694)	ENSSFOG00015024766	ENSSFOG00015025236	CPLX1 (ENSSFOG00015026886)	PCGF3 (ENSSFOG00015001785)	SLC49A3 (ENSSFOG00015001823)
Asian bonytongue	MODERN SPECIES	7	zcchc7 (ENSSFOG00015008796)	ENSSFOG00015008838	ENSSFOG00015008869	UBA6 (ENSSFOG00015008958)	grhprb (ENSSFOG00015009146)	SMU1 (ENSSFOG00015009188)	dnaja1 (ENSSFOG00015009233)	aptx (ENSSFOG00015009267)	TBC1D2 (ENSSFOG00015009293)	SLC44A1 (ENSSFOG00015009310)	abca1a (ENSSFOG00015009376)	b4galt1l (ENSSFOG00015009528)	ENSSFOG00015018746	stra6l (ENSSFOG00015018765)	ENSSFOG00015018790	NFIB (ENSSFOG00015018825) ##22	PPP3CA (ENSSFOG00015018908)	H2AZ1 (ENSSFOG00015029988)	ENSSFOG00015018971	ostc (ENSSFOG00015019009)	etnppl (ENSSFOG00015019020)	USP48 (ENSSFOG00015019049)	LDLRAD2 (ENSSFOG00015019135)	snrpc (ENSSFOG00015019150)	ilrun (ENSSFOG00015019163)	pacsin1b (ENSSFOG00015019174)	RPS10 (ENSSFOG00015019200)	nudt3a (ENSSFOG00015019218)	ENSSFOG00015019090	ENSSFOG00015019100	ENSSFOG00015019151
P. kingsleyae	MODERN SPECIES	182	SLC44A1 (ENSPKIG00000023675)	ABCA1 (ENSPKIG00000023741)	nipsnap3a (ENSPKIG00000023824)	nipsnap3a (ENSPKIG00000023841)	exosc3 (ENSPKIG00000025606)	b4galt1l (ENSPKIG00000025614)	rest (ENSPKIG00000025685)	noa1 (ENSPKIG00000025654)	polr2b (ENSPKIG00000000008)	igfbp7 (ENSPKIG00000000031)	COX18 (ENSPKIG00000000041)	tdrd7a (ENSPKIG00000000052)	TMOD1 (ENSPKIG00000000069)	plaa (ENSPKIG00000000092)	ENSPKIG00000000118	NFIB (ENSPKIG00000000142) ##22	BANK1 (ENSPKIG00000000178)	PPP3CA (ENSPKIG00000000217)	ENSPKIG00000000260	DDIT4L (ENSPKIG00000000268)	H2AZ1 (ENSPKIG00000000273)	mllt3 (ENSPKIG00000000298)	ENSPKIG00000000409	hacd4 (ENSPKIG00000000528)	slc24a2 (ENSPKIG00000000585)	rpl34 (ENSPKIG00000000673)	ostc (ENSPKIG00000000697)
Clupeocephala	ANCESTRAL SPECIES	208	ENSGT00940000157772	ENSGT00940000153289.a.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000158215	ENSGT00390000008250	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000007252.c	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00940000157910	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b
Otomorpha	ANCESTRAL SPECIES	504													ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a
Otophysi	ANCESTRAL SPECIES	208	ENSGT00940000155795.f	ENSGT00730000112044	ENSGT00940000155658	ENSGT00940000156615.a	ENSGT00940000154818	ENSGT00390000008645	ENSGT00390000005094.h	ENSGT00940000167021	ENSGT00950000182899.C.b	ENSGT00600000085600	ENSGT00390000013368	ENSGT00510000047760	ENSGT01070000254383	ENSGT00940000167160	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a
Cyprinoidei	ANCESTRAL SPECIES	3	ENSGT00940000166331	ENSGT00950000182985.b.b.rc.b	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00550000074832	ENSGT00940000159032	ENSGT00390000017284.a.b.c	ENSGT00510000047418	ENSGT00940000155980.A	ENSGT00390000005656	ENSGT00940000159592	ENSGT00600000085600.b	ENSGT00390000013368	ENSGT00510000047760	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306
Cyprininae	ANCESTRAL SPECIES	450	ENSGT00940000166331.a	ENSGT00950000182985.b.b.sc.l.a.b	ENSGT00940000160539.d	ENSGT00940000164137.a.a	ENSGT00550000074832.h	ENSGT00940000159032.c	ENSGT00390000017284.a.b.c	ENSGT00510000047418	ENSGT00940000155980.A.d	ENSGT00390000005656	ENSGT00940000159592.h	ENSGT00600000085600.b	ENSGT00390000013368	ENSGT00510000047760.e	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00390000004049.b.b	ENSGT00390000003738.a.a	ENSGT00940000159816	ENSGT00940000160688.m	ENSGT00950000183153.c.a.r	ENSGT00390000000645	ENSGT00390000008294.p
Goldfish	MODERN SPECIES	314											ENSCARG00000065467	ENSCARG00000065481	slx1b (ENSCARG00000065497)	zgc:112271 (ENSCARG00000065509)	zdhhc21 (ENSCARG00000065520)	NFIB (ENSCARG00000065559) ##22	ENSCARG00000066261	ENSCARG00000066265	ENSCARG00000066270
Cyprininae_a	ANCESTRAL SPECIES	128	ENSGT00940000166331.b	ENSGT00950000182985.b.b.sc.l.a.a	ENSGT00940000160539.c	ENSGT00940000164137.a.b	ENSGT00550000074832.g	ENSGT00940000159032.d	ENSGT00390000017284.a.b.c.a	ENSGT00510000047418	ENSGT00940000155980.A.d	ENSGT00390000005656	ENSGT00940000159592.h	ENSGT00600000085600.b	ENSGT00390000013368	ENSGT00510000047760.e	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00390000004049.b.b	ENSGT00390000003738.a.a.e	ENSGT00940000159340	ENSGT00940000160688.n
Golden-line barbel	MODERN SPECIES	51	brms1 (ENSSGRG00000018629)	ppp1r14bb (ENSSGRG00000018628)	plcb3 (ENSSGRG00000018269)	slc8a4b (ENSSGRG00000018260)	cct7 (ENSSGRG00000018258)	hspa12b (ENSSGRG00000018257)	PAIP2B (ENSSGRG00000018255)	nagk (ENSSGRG00000018254)	dok1b (ENSSGRG00000018253)	m1ap (ENSSGRG00000018252)	SEMA4F (ENSSGRG00000018251)	ENSSGRG00000018250	slx1b (ENSSGRG00000018249)	zgc:112271 (ENSSGRG00000018248)	zdhhc21 (ENSSGRG00000018247)	NFIB (ENSSGRG00000018219) ##22	ENSSGRG00000018217	ENSSGRG00000018216	sp100.4 (ENSSGRG00000018178)	ENSSGRG00000018177	slc25a17 (ENSSGRG00000018176)	ENSSGRG00000018174	ENSSGRG00000018171	desi1a (ENSSGRG00000018170)	cbx7a (ENSSGRG00000018169)	EP300 (ENSSGRG00000017514)	xpnpep3 (ENSSGRG00000017418)	st13 (ENSSGRG00000017415)	ENSSGRG00000017412	ENSSGRG00000017410	mief1 (ENSSGRG00000017409)
Common carp reference	MODERN SPECIES		pcxb (ENSCCRG00000066893)	brms1 (ENSCCRG00000062539)	plcb3 (ENSCCRG00000005079)	slc8a4b (ENSCCRG00000021735)	cct7 (ENSCCRG00000021567)	hspa12b (ENSCCRG00000045047)	ENSCCRG00000045980	nagk (ENSCCRG00000046021)	dok1b (ENSCCRG00000046466)	m1ap (ENSCCRG00000046470)	SEMA4F (ENSCCRG00000018564)	ENSCCRG00000067285	slx1b (ENSCCRG00000027261)	ENSCCRG00000065891	ENSCCRG00000027249	ENSCCRG00000026856 ##22	ENSCCRG00000076964	ENSCCRG00000073647	ENSCCRG00000056431	ENSCCRG00000074682	ENSCCRG00000068344	ENSCCRG00000010676	ENSCCRG00000060753	ENSCCRG00000066345	ENSCCRG00000026609	ENSCCRG00000043376	ENSCCRG00000066193	ENSCCRG00000071682	rpl34 (ENSCCRG00000082243)	ENSCCRG00000068524	ENSCCRG00000029848
Characiphysae	ANCESTRAL SPECIES	19	ENSGT00730000112044.a	ENSGT00940000155658	ENSGT00940000156615.a	ENSGT00940000154818	ENSGT00390000008645	ENSGT00390000005094.h	ENSGT00940000167021	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00600000085600	ENSGT00390000013368	ENSGT00510000047760	ENSGT01070000254383	ENSGT00940000167160	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a.a	ENSGT00390000003738.a.a	ENSGT00940000159816	ENSGT00940000160688	ENSGT00950000183153.c.a.r	ENSGT00970000197012	ENSGT00940000165038.b	ENSGT00940000156391.c	ENSGT00950000183001.b.b.b	ENSGT00390000000645	ENSGT00390000008294	ENSGT00390000001376
Channel catfish	MODERN SPECIES	26	KIRREL (ENSIPUG00000018766)	ENSIPUG00000018866	dock11 (ENSIPUG00000018875)	ntn4 (ENSIPUG00000018955)	snrpf (ENSIPUG00000018994)	amdhd1 (ENSIPUG00000019028)	ENSIPUG00000019051	ENSIPUG00000019081	ENSIPUG00000019135	ENSIPUG00000019147	ENSIPUG00000019155	slx1b (ENSIPUG00000019176)	zgc:112271 (ENSIPUG00000019184)	ENSIPUG00000019209	Zdhhc21 (ENSIPUG00000019216)	nfib (ENSIPUG00000019279) ##22	bank1 (ENSIPUG00000019358)	PPP3CA (ENSIPUG00000019387)	ddit4l (ENSIPUG00000019445)	ENSIPUG00000019458	gps2 (ENSIPUG00000019478)	IF5A1 (ENSIPUG00000019529)	YBX2 (ENSIPUG00000019571)	SLC2A4 (ENSIPUG00000019585)	ENSIPUG00000019605	hmx1 (ENSIPUG00000019616)	cpz (ENSIPUG00000019627)	GPR26 (ENSIPUG00000019643)	trmt44 (ENSIPUG00000019663)	rpl34 (ENSIPUG00000019685)	ostc (ENSIPUG00000019701)
Characiphysae_b	ANCESTRAL SPECIES	18	ENSGT00730000112044.a	ENSGT00940000155658	ENSGT00940000156615.a	ENSGT00940000154818	ENSGT00390000008645	ENSGT00390000005094.h	ENSGT00940000167021	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00600000085600	ENSGT00390000013368	ENSGT00510000047760	ENSGT01070000254383	ENSGT00940000167160	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a.a	ENSGT00390000004049.b	ENSGT00390000003738.a.a	ENSGT00940000159816	ENSGT00940000160688	ENSGT00950000183153.c.a.r	ENSGT00970000197012	ENSGT00940000165038.b	ENSGT00940000156391.c	ENSGT00950000183001.b.b.b	ENSGT00390000000645	ENSGT00390000008294
Electric eel	MODERN SPECIES	144	ENSEEEG00000018472	ENSEEEG00000018475	etnppl (ENSEEEG00000018487)	ostc (ENSEEEG00000018525)	rpl34 (ENSEEEG00000018535)	trmt44 (ENSEEEG00000018540)	ENSEEEG00000018545	ENSEEEG00000018547	CPZ (ENSEEEG00000018558)	ENSEEEG00000018595	ENSEEEG00000018596	slx1b (ENSEEEG00000018598)	zgc:112271 (ENSEEEG00000018599)	ENSEEEG00000018600	zdhhc21 (ENSEEEG00000018602)	NFIB (ENSEEEG00000018612) ##22	PPP3CA (ENSEEEG00000018736)	DDIT4L (ENSEEEG00000019713)	H2AZ1 (ENSEEEG00000019714)	GPS2 (ENSEEEG00000019741)	EIF5AL1 (ENSEEEG00000019742)	YBX2 (ENSEEEG00000019744)	SLC2A4 (ENSEEEG00000019758)	ENSEEEG00000020139	ENSEEEG00000020140
Characoidei	ANCESTRAL SPECIES	9	ENSGT00730000112044.a	ENSGT00940000155658	ENSGT00940000156615.a	ENSGT00940000154818	ENSGT00390000008645	ENSGT00390000005094.h	ENSGT00940000167021	ENSGT00950000182899.C.b	ENSGT00600000085600	ENSGT00390000013368	ENSGT00510000047760	ENSGT01070000254383	ENSGT00940000167160	ENSGT01100000263491.a.b.b.c.a.b	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a.a	ENSGT00390000004049.b	ENSGT00390000003738.a.a	ENSGT00940000159816	ENSGT00940000160688	ENSGT00950000183153.c.a.r	ENSGT00970000197012	ENSGT00940000165038.b	ENSGT00940000156391.c	ENSGT00950000183001.b.b.b	ENSGT00390000000645	ENSGT00390000008294
Red-bellied piranha	MODERN SPECIES	203									ENSPNAG00000016612	slx1b (ENSPNAG00000016624)	zgc:112271 (ENSPNAG00000016637)	ENSPNAG00000016650	ENSPNAG00000016666	ENSPNAG00000016676	zdhhc21 (ENSPNAG00000016716)	NFIB (ENSPNAG00000016834) ##22	BANK1 (ENSPNAG00000016866)	PPP3CA (ENSPNAG00000016996)	DDIT4L (ENSPNAG00000017002)	H2AZ1 (ENSPNAG00000017018)	gps2 (ENSPNAG00000017079)	EIF5AL1 (ENSPNAG00000017124)	YBX2 (ENSPNAG00000017142)	SLC2A4 (ENSPNAG00000017211)	ENSPNAG00000017221	ENSPNAG00000017228	ENSPNAG00000017238	CPZ (ENSPNAG00000017279)	GPR78 (ENSPNAG00000017300)	trmt44 (ENSPNAG00000017390)	rpl34 (ENSPNAG00000017412)
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	7	ENSAMXG00000042808	ENSAMXG00000017775	ENSAMXG00000031153	ENSAMXG00000037354	ENSAMXG00000036222	ENSAMXG00000035923	ENSAMXG00000033518	ENSAMXG00000030755	pde5ab (ENSAMXG00000017789)	mad2l1 (ENSAMXG00000017812)	ARSJ (ENSAMXG00000025064)	cacnb2a (ENSAMXG00000010460)	ENSAMXG00000010451	arl8 (ENSAMXG00000010445)	ENSAMXG00000033784	NFIB (ENSAMXG00000007288) ##22	BANK1 (ENSAMXG00000007267)	ENSAMXG00000036957	PPP3CA (ENSAMXG00000042068)	DDIT4L (ENSAMXG00000031511)	H2AZ1 (ENSAMXG00000036471)	gps2 (ENSAMXG00000007130)	EIF5AL1 (ENSAMXG00000007107)	YBX2 (ENSAMXG00000007090)	SLC2A4 (ENSAMXG00000040304)	ENSAMXG00000041225	ENSAMXG00000030382	ENSAMXG00000041904	ENSAMXG00000040748	ENSAMXG00000006857	ENSAMXG00000040947
Mexicana tetra	MODERN SPECIES	921										ENSAMXG00000041198	slx1b (ENSAMXG00000007321)	ENSAMXG00000032774	ENSAMXG00000033065	ENSAMXG00000037796	zdhhc21 (ENSAMXG00000007300)	ENSAMXG00000039179 ##22
Clupeiformes	ANCESTRAL SPECIES	399													ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a	ENSGT00940000157535.m.a	ENSGT00940000160483.k.b	ENSGT00940000155978.a.a	ENSGT01090000260186
Denticle herring	MODERN SPECIES		plin2 (ENSDCDG00000030074)	larp7 (ENSDCDG00000030079)	ENSDCDG00000030085	ADAMTSL1 (ENSDCDG00000030090)	COL25A1 (ENSDCDG00000030127)	etnppl (ENSDCDG00000030154)	ostc (ENSDCDG00000030602)	rpl34 (ENSDCDG00000030603)	trmt44 (ENSDCDG00000030606)	GPR78 (ENSDCDG00000030610)	CPZ (ENSDCDG00000030611)	HMX1 (ENSDCDG00000030613)	tdrd7b (ENSDCDG00000030623)	plaa (ENSDCDG00000030671)	zdhhc21 (ENSDCDG00000030694)	NFIB (ENSDCDG00000030705) ##22	BANK1 (ENSDCDG00000030753)	PPP3CA (ENSDCDG00000030774)	DDIT4L (ENSDCDG00000031026)	H2AZ1 (ENSDCDG00000031029)	ENSDCDG00000031038	RASGRP2 (ENSDCDG00000031048)	NRXN2 (ENSDCDG00000031126)	ENSDCDG00000031305	SLC24A2 (ENSDCDG00000031308)	ENSDCDG00000031359	ENSDCDG00000031441	ENSDCDG00000031443	ENSDCDG00000031518	MPDZ (ENSDCDG00000034214)	LURAP1L (ENSDCDG00000034558)
Atlantic herring	MODERN SPECIES	9	SLC12A6 (ENSCHAG00000012958)	tox4b (ENSCHAG00000014820)	supt16h (ENSCHAG00000014855)	ENSCHAG00000015865	casq1b (ENSCHAG00000015890)	PEA15 (ENSCHAG00000015946)	ENSCHAG00000015964	ENSCHAG00000015978	ENSCHAG00000015984	ENSCHAG00000016029	ENSCHAG00000016070	ENSCHAG00000016075	tdrd7b (ENSCHAG00000016110)	plaa (ENSCHAG00000016260)	zdhhc21 (ENSCHAG00000016598)	NFIB (ENSCHAG00000016612) ##22	PPP3CA (ENSCHAG00000001172)	DDIT4L (ENSCHAG00000002255)	H2AZ1 (ENSCHAG00000002270)	ENSCHAG00000002410	RASGRP2 (ENSCHAG00000002534)	ENSCHAG00000003065	ENSCHAG00000003097	NRXN2 (ENSCHAG00000003236)	ENSCHAG00000006527	ENSCHAG00000006540	ENSCHAG00000006560	ENSCHAG00000006594	ENSCHAG00000006621	ENSCHAG00000006663	ENSCHAG00000006671
Euteleosteomorpha	ANCESTRAL SPECIES	183					ENSGT00940000156243	ENSGT00940000159642.e	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00390000007252.c	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000008250	ENSGT00940000158215	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000204039
Protacanthopterygii	ANCESTRAL SPECIES	20	ENSGT00530000067688	ENSGT00940000159031	ENSGT00390000018426.n	ENSGT00940000165048.a	ENSGT00940000154949.b.hb	ENSGT01030000236063	ENSGT00940000154949.b.ib	ENSGT00390000007252.c	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000154308.A.b.a.a.b	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b	ENSGT00390000008250	ENSGT00940000158215	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00940000165285.f	ENSGT00530000063169.a	ENSGT00530000063821.b.b	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a
Northern pike	MODERN SPECIES	23	ENSELUG00000015210	msantd1 (ENSELUG00000015231)	dtx4a (ENSELUG00000015262)	coro1b (ENSELUG00000015281)	znhit1 (ENSELUG00000015302)	ENSELUG00000015311	larp7 (ENSELUG00000015341)	ENSELUG00000015347	plin2 (ENSELUG00000015381)	ENSELUG00000015361	ENSELUG00000015450	haus6 (ENSELUG00000001574)	DENND4C (ENSELUG00000015503)	plaa (ENSELUG00000015555)	zdhhc21 (ENSELUG00000015599)	NFIB (ENSELUG00000015696) ##22	BANK1 (ENSELUG00000015766)	PPP3CA (ENSELUG00000015889)	DDIT4L (ENSELUG00000015919)	H2AZ1 (ENSELUG00000015934)	mllt3 (ENSELUG00000016011)	ENSELUG00000016097	HACD4 (ENSELUG00000016126)	C4orf54 (ENSELUG00000016148)	ENSELUG00000016170	ENSELUG00000016183	ENSELUG00000031565	trmt10a (ENSELUG00000016190)	spata6l (ENSELUG00000016212)	slc1a1 (ENSELUG00000016268)	RAP1GDS1 (ENSELUG00000016426)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	256	ENSGT00940000155804.k.a.a	ENSGT00940000153617.B.h	ENSGT00940000156337.c.g	ENSGT00950000183027.b.b.e	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000183054.a.a.b.d	ENSGT00950000182924.A.b.a.b.h	ENSGT00940000158985.e.b	ENSGT00940000157235.l	ENSGT00950000183137.b.a.i	ENSGT00940000155800.b	ENSGT00940000153289.a.a.b.c	ENSGT00940000157772.c	ENSGT00550000074944.k	ENSGT00940000158006.a	ENSGT00950000182916.a.b.a.b.u.a ##22	ENSGT00940000156306.d	ENSGT00530000063652.a.a.b	ENSGT00940000155903.g.b	ENSGT00730000111645.a.d
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00940000155804.k.a.a	ENSGT00940000153617.B.h	ENSGT00940000156337.c.g	ENSGT00950000183027.b.b.e	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000182924.A.b.a.b.h	ENSGT00940000158985.e.b	ENSGT00940000157235.l	ENSGT00950000183137.b.a.i	ENSGT00940000155800.b	ENSGT00940000165054.B	ENSGT00940000153289.a.a.b.c	ENSGT00940000157772.c	ENSGT00550000074944.k	ENSGT00940000158006.a	ENSGT00950000182916.a.b.a.b.u.a ##22	ENSGT00940000156306.d	ENSGT00530000063652.a.a.b	ENSGT00900000140979.a.a	ENSGT00940000155903.g.b	ENSGT00730000111645.a.d	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b	ENSGT00940000155397.a.b.h	ENSGT00940000154641.B.b.l	ENSGT00390000014293.a.c	ENSGT00940000161376	ENSGT00940000155429.a.a.b	ENSGT00940000158215.p
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000155804.k.a.a	ENSGT00940000153617.B.h	ENSGT00940000156337.c.g	ENSGT00950000183027.b.b.e	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000182924.A.b.a.b.h	ENSGT00940000158985.e.b	ENSGT00940000157235.l	ENSGT00950000183137.b.a.i	ENSGT00940000155800.b	ENSGT00940000165054.B	ENSGT00940000153289.a.a.b.c	ENSGT00940000157772.c	ENSGT00550000074944.k	ENSGT00940000158006.a	ENSGT00950000182916.a.b.a.b.u.a ##22	ENSGT00940000156306.d	ENSGT00530000063652.a.a.b	ENSGT00900000140979.a.a	ENSGT00940000155903.g.b	ENSGT00730000111645.a.d	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b	ENSGT00940000155397.a.b.h	ENSGT00390000014293.a.c	ENSGT00940000154641.B.b.l	ENSGT00940000155429.a.a.b	ENSGT00940000158215.p	ENSGT00390000008250.h
Rainbow trout	MODERN SPECIES	13	SYNPO2 (ENSOMYG00000045708)	sec24d (ENSOMYG00000045731)	KCNIP4 (ENSOMYG00000045813)	ENSOMYG00000045831	ENSOMYG00000045869	PPARGC1A (ENSOMYG00000045926)	ENSOMYG00000062329	ENSOMYG00000057396	ENSOMYG00000045941	ENSOMYG00000072861	ENSOMYG00000045949	ENSOMYG00000045951	ENSOMYG00000045963	ENSOMYG00000026017	ENSOMYG00000026400	ENSOMYG00000026434 ##22	ENSOMYG00000064361	PPP3CA (ENSOMYG00000026946)	ENSOMYG00000028176	ENSOMYG00000028197	H2AZ1 (ENSOMYG00000028216)	ENSOMYG00000028306	ENSOMYG00000028405	ENSOMYG00000028418	ENSOMYG00000028435	ENSOMYG00000028453	ENSOMYG00000051473	ENSOMYG00000028593	ENSOMYG00000028779	ENSOMYG00000029095	ENSOMYG00000029116
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00940000155804.k.a.a	ENSGT00940000153617.B.h	ENSGT00940000156337.c.g	ENSGT00950000183027.b.b.e	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000182924.A.b.a.b.h	ENSGT00940000158985.e.b	ENSGT00940000157235.l	ENSGT00950000183137.b.a.i	ENSGT00940000155800.b	ENSGT00940000165054.B	ENSGT00940000153289.a.a.b.c	ENSGT00940000157772.c	ENSGT00550000074944.k	ENSGT00940000158006.a	ENSGT00950000182916.a.b.a.b.u.a ##22	ENSGT00940000156306.d	ENSGT00530000063652.a.a.b	ENSGT00900000140979.a.a.n.a	ENSGT00940000155903.g.b	ENSGT00730000111645.a.d	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b	ENSGT00940000155397.a.b.h	ENSGT00390000014293.a.c	ENSGT00940000154641.B.b.l	ENSGT00940000155429.a.a.b	ENSGT00940000158215.p	ENSGT00390000008250.h
Coho salmon	MODERN SPECIES	29	ENSOKIG00005001836	USP53 (ENSOKIG00005001862)	MYOZ2 (ENSOKIG00005001910)	SYNPO2 (ENSOKIG00005001919)	sec24d (ENSOKIG00005002237)	KCNIP4 (ENSOKIG00005003328)	ENSOKIG00005003345	ADGRA3 (ENSOKIG00005003387)	PPARGC1A (ENSOKIG00005003470)	ENSOKIG00005003493	ACER2 (ENSOKIG00005003511)	ENSOKIG00005003521	ACO1 (ENSOKIG00005003541)	plaa (ENSOKIG00005003581)	ZDHHC21 (ENSOKIG00005003629)	NFIB (ENSOKIG00005003656) ##22	PPP3CA (ENSOKIG00005003983)	DDIT4L (ENSOKIG00005008111)	ENSOKIG00005008127	MLLT3 (ENSOKIG00005008168)	ENSOKIG00005008202	ENSOKIG00005008214	ENSOKIG00005008227	TRMT10A (ENSOKIG00005008243)	spata6l (ENSOKIG00005008255)	slc1a1 (ENSOKIG00005008275)	RAP1GDS1 (ENSOKIG00005008342)	ENSOKIG00005009165	tspan5a (ENSOKIG00005009185)	DENND4C (ENSOKIG00005009314)	ENSOKIG00005009610
Chinook salmon	MODERN SPECIES	6	ADGRA3 (ENSOTSG00005047778)	PPARGC1A (ENSOTSG00005047779)	ENSOTSG00005047780	cyp3a65 (ENSOTSG00005047781)	cyp3a65 (ENSOTSG00005047782)	cyp3a65 (ENSOTSG00005047783)	ENSOTSG00005047784	ENSOTSG00005047785	ENSOTSG00005047786	ENSOTSG00005047787	ACER2 (ENSOTSG00005047788)	ENSOTSG00005047789	ACO1 (ENSOTSG00005047791)	plaa (ENSOTSG00005047796)	zdhhc21 (ENSOTSG00005047798)	NFIB (ENSOTSG00005047799) ##22	PPP3CA (ENSOTSG00005047806)	DDIT4L (ENSOTSG00005047914)	H2AZ1 (ENSOTSG00005047915)	mllt3 (ENSOTSG00005047917)	ENSOTSG00005047918	ENSOTSG00005047919	ENSOTSG00005047920	trmt10a (ENSOTSG00005047921)	spata6l (ENSOTSG00005047922)	slc1a1 (ENSOTSG00005047923)	RAP1GDS1 (ENSOTSG00005047924)	ENSOTSG00005047925	tspan5a (ENSOTSG00005047926)	DENND4C (ENSOTSG00005047927)	ENSOTSG00005047928
Salmo	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b.u.a ##22
Atlantic salmon	MODERN SPECIES	26	SYNPO2 (ENSSSAG00000007715)	sec24d (ENSSSAG00000002760)	KCNIP4 (ENSSSAG00000092519)	ENSSSAG00000063507	PPARGC1A (ENSSSAG00000063349)	ENSSSAG00000106996	ENSSSAG00000063308	ENSSSAG00000091906	ENSSSAG00000096793	ENSSSAG00000097570	cj011 (ENSSSAG00000063292)	ENSSSAG00000086352	ENSSSAG00000063203	ENSSSAG00000062983	ENSSSAG00000062965	ENSSSAG00000057685 ##22	ENSSSAG00000057570	PPP3CA (ENSSSAG00000040278)	Ddit4l (ENSSSAG00000039999)	H2AZ1 (ENSSSAG00000039934)	ENSSSAG00000039827	ENSSSAG00000110195	ENSSSAG00000090565	ENSSSAG00000120143	spata6l (ENSSSAG00000039413)	ENSSSAG00000085280	slc1a1 (ENSSSAG00000037401)	ENSSSAG00000036477	ENSSSAG00000033777	ENSSSAG00000030907	ENSSSAG00000006377
Salmoninae	ANCESTRAL SPECIES	1994																ENSGT00950000182916.a.b.a.b.u.b ##22	ENSGT00950000182866.D.d.a.c.a.i.b.a.b
Huchen	MODERN SPECIES	1357			ENSHHUG00000032856	ENSHHUG00000032850	plin2 (ENSHHUG00000032848)	ENSHHUG00000032846	ENSHHUG00000032841	ENSHHUG00000032840	ENSHHUG00000032837	haus6 (ENSHHUG00000032821)	DENND4C (ENSHHUG00000032637)	ENSHHUG00000032628	ENSHHUG00000032626	plaa (ENSHHUG00000032614)	zdhhc21 (ENSHHUG00000032610)	NFIB (ENSHHUG00000032331) ##22	nxpe3 (ENSHHUG00000032327)
Salmoninae_a	ANCESTRAL SPECIES	34	ENSGT00390000015386.b.a	ENSGT00940000159778.a.d	ENSGT00940000164407.a.b.a.a	ENSGT00390000002245.h	ENSGT00940000157122.b.a.e	ENSGT00940000159031.y.a	ENSGT00940000154949.b.ib	ENSGT00390000007252.c.e	ENSGT00950000182920.b.a.b.a.a.g	ENSGT00940000154308.A.b.a.a.b	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b.b	ENSGT00390000008250.g	ENSGT00940000158215.o	ENSGT00550000074944.l	ENSGT00940000158006.b	ENSGT00950000182916.a.b.a.b.u.b ##22	ENSGT00950000182866.D.d.a.c.a.i.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306.c	ENSGT00530000063652.a.a.a	ENSGT00940000155903.g.a	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a.c	ENSGT00530000063169.a.q	ENSGT00990000214324	ENSGT00940000155397.a.b.g	ENSGT00390000014293.a.d	ENSGT00940000155429.a.a.a	ENSGT00990000204039	ENSGT00940000156990
Salmo	ANCESTRAL SPECIES	18	ENSGT00390000015386.b.a	ENSGT00940000159778.a.d	ENSGT00940000164407.a.b.a.a	ENSGT00390000002245.h	ENSGT00940000157122.b.a.e	ENSGT00940000159031.y.a	ENSGT00940000154949.b.ib	ENSGT00390000007252.c.e	ENSGT00950000182920.b.a.b.a.a.g	ENSGT00940000154308.A.b.a.a.b	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b.b	ENSGT00390000008250.g	ENSGT00940000158215.o	ENSGT00550000074944.l	ENSGT00940000158006.b	ENSGT00950000182916.a.b.a.b.u.b ##22	ENSGT00950000182866.D.d.a.c.a.i.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306.c	ENSGT00530000063652.a.a.a	ENSGT00940000155903.g.a	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a.c	ENSGT00530000063169.a.q	ENSGT00990000214324	ENSGT00940000155397.a.b.g	ENSGT00390000014293.a.d	ENSGT00940000155429.a.a.a	ENSGT00990000204039	ENSGT00940000156990
River trout	MODERN SPECIES	35	ENSSTUG00000047837	msantd1 (ENSSTUG00000047851)	dtx4a (ENSSTUG00000047860)	coro1b (ENSSTUG00000047886)	ENSSTUG00000047900	ENSSTUG00000047914	ENSSTUG00000047917	plin2 (ENSSTUG00000047926)	ENSSTUG00000047936	ENSSTUG00000047944	haus6 (ENSSTUG00000047949)	DENND4C (ENSSTUG00000048007)	ENSSTUG00000048220	plaa (ENSSTUG00000048239)	zdhhc21 (ENSSTUG00000048446)	NFIB (ENSSTUG00000048474) ##22	nxpe3 (ENSSTUG00000000503)	BANK1 (ENSSTUG00000000506)	PPP3CA (ENSSTUG00000000534)	DDIT4L (ENSSTUG00000000652)	H2AZ1 (ENSSTUG00000000660)	mllt3 (ENSSTUG00000000674)	ENSSTUG00000000738	hacd4 (ENSSTUG00000000918)	C4orf54 (ENSSTUG00000000922)	trmt10a (ENSSTUG00000000926)	ENSSTUG00000000935	slc1a1 (ENSSTUG00000000964)	RAP1GDS1 (ENSSTUG00000001109)	tspan5a (ENSSTUG00000001228)	ENSSTUG00000001247
Atlantic salmon	MODERN SPECIES	9	ENSSSAG00000040387	coro1b (ENSSSAG00000040506)	ENSSSAG00000040622	ENSSSAG00000040648	ENSSSAG00000040771	ENSSSAG00000040700	ENSSSAG00000040797	ENSSSAG00000115764	ENSSSAG00000092513	ENSSSAG00000040980	ENSSSAG00000041291	ENSSSAG00000053848	ENSSSAG00000053876	ENSSSAG00000053975	ENSSSAG00000096600	ENSSSAG00000054032 ##22	ENSSSAG00000084865	ENSSSAG00000095391	ENSSSAG00000056830	PPP3CA (ENSSSAG00000056867)	ddit4l (ENSSSAG00000057471)	H2AZ1 (ENSSSAG00000057486)	mllt3 (ENSSSAG00000057529)	focad (ENSSSAG00000057702)	hacd4 (ENSSSAG00000063895)	ENSSSAG00000082763	ENSSSAG00000082168	ENSSSAG00000063943	slc1a1 (ENSSSAG00000063951)	ENSSSAG00000064079	tspan5a (ENSSSAG00000065056)
Oncorhynchus	ANCESTRAL SPECIES	31	ENSGT00390000015386.b.a	ENSGT00940000159778.a.d	ENSGT00940000164407.a.b.a.a	ENSGT00390000002245.h	ENSGT00940000157122.b.a.e	ENSGT00940000159031.y.a	ENSGT00940000154949.b.hb.b	ENSGT00390000007252.c.e	ENSGT00950000182920.b.a.b.a.a.g	ENSGT00940000154308.A.b.a.a.b	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b.b	ENSGT00390000008250.g	ENSGT00940000158215.o	ENSGT00550000074944.l	ENSGT00940000158006.b	ENSGT00950000182916.a.b.a.b.u.b ##22	ENSGT00950000182866.D.d.a.c.a.i.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306.c	ENSGT00530000063652.a.a.a	ENSGT00940000155903.g.a	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a.c	ENSGT00530000063169.a.q	ENSGT00990000214324	ENSGT00940000155397.a.b.g	ENSGT00390000014293.a.d	ENSGT00940000161376	ENSGT00940000155429.a.a.a	ENSGT00990000204039
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000005637	msantd1 (ENSOMYG00000005334)	ENSOMYG00000005250	coro1b (ENSOMYG00000005186)	ENSOMYG00000005128	ENSOMYG00000005083	ENSOMYG00000005060	ENSOMYG00000005011	ENSOMYG00000004987	ENSOMYG00000004920	ENSOMYG00000004846	ENSOMYG00000004585	ENSOMYG00000003535	ENSOMYG00000003148	ENSOMYG00000068849	ENSOMYG00000003066 ##22	ENSOMYG00000002928	BANK1 (ENSOMYG00000002844)	ENSOMYG00000074496	PPP3CA (ENSOMYG00000002701)	ENSOMYG00000054779	DDIT4L (ENSOMYG00000002531)	H2AZ1 (ENSOMYG00000002472)	mllt3 (ENSOMYG00000002515)	ENSOMYG00000002377	hacd4 (ENSOMYG00000002160)	ENSOMYG00000065315	ENSOMYG00000002143	ENSOMYG00000002125	ENSOMYG00000002116	slc1a1 (ENSOMYG00000002082)
Oncorhynchus_a	ANCESTRAL SPECIES	30	ENSGT00390000015386.b.a	ENSGT00940000159778.a.d	ENSGT00940000164407.a.b.a.a	ENSGT00390000002245.h	ENSGT00940000157122.b.a.e	ENSGT00940000159031.y.a	ENSGT00940000154949.b.hb.b	ENSGT00390000007252.c.e	ENSGT00950000182920.b.a.b.a.a.g	ENSGT00940000154308.A.b.a.a.b	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b.b	ENSGT00390000008250.g	ENSGT00940000158215.o	ENSGT00550000074944.l	ENSGT00940000158006.b	ENSGT00950000182916.a.b.a.b.u.b ##22	ENSGT00950000182866.D.d.a.c.a.i.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306.c	ENSGT00530000063652.a.a.a	ENSGT00900000140979.a.a.n.b	ENSGT00940000155903.g.a	ENSGT00530000062962.b.b	ENSGT00730000111645.a.c	ENSGT00530000063169.a.q	ENSGT00990000214324	ENSGT00940000155397.a.b.g	ENSGT00390000014293.a.d	ENSGT00940000161376	ENSGT00940000155429.a.a.a	ENSGT00990000204039
Coho salmon	MODERN SPECIES	7	DOK7 (ENSOKIG00005025357)	HGFAC (ENSOKIG00005025259)	ENSOKIG00005027438	msantd1 (ENSOKIG00005027413)	dtx4a (ENSOKIG00005027384)	coro1b (ENSOKIG00005027344)	ENSOKIG00005027291	ENSOKIG00005027261	plin2 (ENSOKIG00005027244)	ENSOKIG00005027238	ENSOKIG00005027220	haus6 (ENSOKIG00005027182)	ENSOKIG00005026700	PLAA (ENSOKIG00005025707)	ZDHHC21 (ENSOKIG00005025640)	NFIB (ENSOKIG00005025535) ##22	NXPE3 (ENSOKIG00005025501)	BANK1 (ENSOKIG00005025483)	PPP3CA (ENSOKIG00005025273)	DDIT4L (ENSOKIG00005025212)	H2AZ1 (ENSOKIG00005025091)	mllt3 (ENSOKIG00005025061)	hacd4 (ENSOKIG00005025014)	C4orf54 (ENSOKIG00005025004)	trmt10a (ENSOKIG00005024987)	ENSOKIG00005024977	slc1a1 (ENSOKIG00005024458)	RAP1GDS1 (ENSOKIG00005024358)	ENSOKIG00005024316	ENSOKIG00005024300	frem1a (ENSOKIG00005023905)
Salmoninae	ANCESTRAL SPECIES	269							ENSGT00940000154949.b.hb.b	ENSGT00390000007252.c.e	ENSGT00950000182920.b.a.b.a.a.g	ENSGT00940000154308.A.b.a.a.b	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b.b	ENSGT00390000008250.g	ENSGT00940000158215.o	ENSGT00550000074944.l	ENSGT00940000158006.b	ENSGT00950000182916.a.b.a.b.v ##22	ENSGT00390000008787.a	ENSGT00940000156306.c	ENSGT00530000063652.a.a.a	ENSGT00900000140979.a.a	ENSGT00940000155903.g.a	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a.c	ENSGT00530000063169.a.q	ENSGT00940000155397.a.b.g	ENSGT00940000180421	ENSGT00390000014293.a.d	ENSGT00940000161376	ENSGT00940000155429.a.a.a	ENSGT00990000204039
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b.v ##22
Salmo	ANCESTRAL SPECIES	49	ENSGT00940000155804.k.a.a	ENSGT00940000153617.B.h	ENSGT00940000156337.c.g	ENSGT00950000183027.b.b.e	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000182924.A.b.a.b.h	ENSGT00940000158985.e.a.a	ENSGT00940000157235.l	ENSGT00950000183137.b.a.i	ENSGT00940000155800.b	ENSGT00940000165054.B	ENSGT00940000153289.a.a.b.c	ENSGT00940000157772.c	ENSGT00550000074944.k	ENSGT00940000158006.a	ENSGT00950000182916.a.b.a.b.v ##22	ENSGT00950000182866.D.d.a.c.a.i.b.a.a	ENSGT00940000156306.d	ENSGT00530000063652.a.a.b	ENSGT00900000140979.a.a	ENSGT00940000155903.g.b	ENSGT00730000111645.a.d	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b	ENSGT00940000155397.a.b.h	ENSGT00940000154641.B.b.l	ENSGT00390000014293.a.c	ENSGT00940000161376	ENSGT00940000155429.a.a.b
River trout	MODERN SPECIES	38	MYOZ2 (ENSSTUG00000043874)	SYNPO2 (ENSSTUG00000043865)	sec24d (ENSSTUG00000041379)	ENSSTUG00000041307	KCNIP4 (ENSSTUG00000041209)	ADGRA3 (ENSSTUG00000040967)	PPARGC1A (ENSSTUG00000040880)	ENSSTUG00000040837	ENSSTUG00000040820	ENSSTUG00000040665	ACER2 (ENSSTUG00000040611)	ENSSTUG00000040588	ACO1 (ENSSTUG00000040449)	plaa (ENSSTUG00000040217)	zdhhc21 (ENSSTUG00000040206)	ENSSTUG00000040201 ##22	ENSSTUG00000040188	nxpe3 (ENSSTUG00000040174)	PPP3CA (ENSSTUG00000035269)	DDIT4L (ENSSTUG00000035157)	H2AZ1 (ENSSTUG00000035152)	mllt3 (ENSSTUG00000035120)	ENSSTUG00000035116	ENSSTUG00000035076	ENSSTUG00000035066	trmt10a (ENSSTUG00000034961)	spata6l (ENSSTUG00000034943)	slc1a1 (ENSSTUG00000034771)	ENSSTUG00000034727	RAP1GDS1 (ENSSTUG00000034176)	tspan5a (ENSSTUG00000034007)
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b.v ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.a.b.v ##22
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2927																NFIB (ENSOTSG00005031990) ##22
Chinook salmon	MODERN SPECIES	1	DOK7 (ENSOTSG00005001897)	HGFAC (ENSOTSG00005001889)	ENSOTSG00005001873	msantd1 (ENSOTSG00005001866)	dtx4a (ENSOTSG00005001851)	coro1b (ENSOTSG00005001823)	larp7 (ENSOTSG00005001815)	ENSOTSG00005001807	plin2 (ENSOTSG00005001802)	ENSOTSG00005001798	ENSOTSG00005001793	haus6 (ENSOTSG00005001767)	DENND4C (ENSOTSG00005001557)	plaa (ENSOTSG00005001522)	zdhhc21 (ENSOTSG00005001513)	ENSOTSG00005001512 ##22	nxpe3 (ENSOTSG00005001510)	BANK1 (ENSOTSG00005001506)	PPP3CA (ENSOTSG00005001494)	DDIT4L (ENSOTSG00005000760)	H2AZ1 (ENSOTSG00005000689)	mllt3 (ENSOTSG00005047259)	hacd4 (ENSOTSG00005047257)	C4orf54 (ENSOTSG00005047256)	trmt10a (ENSOTSG00005047255)	ENSOTSG00005047253	slc1a1 (ENSOTSG00005047237)	RAP1GDS1 (ENSOTSG00005047234)	tspan5a (ENSOTSG00005047233)	ENSOTSG00005047231	frem1a (ENSOTSG00005047230)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	3686																NFIB (ENSHHUG00000025595) ##22
Huchen	MODERN SPECIES	406					PPARGC1A (ENSHHUG00000010146)	ENSHHUG00000010133	ENSHHUG00000010123	ENSHHUG00000010086	ACER2 (ENSHHUG00000010064)	ENSHHUG00000010046	ACO1 (ENSHHUG00000009921)	ENSHHUG00000009896	ENSHHUG00000009886	plaa (ENSHHUG00000009821)	zdhhc21 (ENSHHUG00000009813)	ENSHHUG00000009801 ##22
Acanthomorphata	ANCESTRAL SPECIES	228				ENSGT00390000007252.c	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000178571	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00940000157910	ENSGT00940000159823	ENSGT01030000236063	ENSGT00390000007252.c	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Pinecone sodierfish	MODERN SPECIES	9	sepsecs (ENSMMDG00005015418)	SLC24A2 (ENSMMDG00005015428)	rpl34 (ENSMMDG00005015504)	ostc (ENSMMDG00005015507)	etnppl (ENSMMDG00005015514)	ENSMMDG00005015532	larp7 (ENSMMDG00005015539)	ENSMMDG00005015643	ENSMMDG00005015650	plin2 (ENSMMDG00005015658)	ENSMMDG00005015755	DENND4C (ENSMMDG00005015764)	ENSMMDG00005015805	plaa (ENSMMDG00005015812)	zdhhc21 (ENSMMDG00005015823)	NFIB (ENSMMDG00005015836) ##22	BANK1 (ENSMMDG00005016148)	PPP3CA (ENSMMDG00005016762)	ENSMMDG00005019273	DDIT4L (ENSMMDG00005019275)	ENSMMDG00005019279	ENSMMDG00005019280	pcxb (ENSMMDG00005019294)	ENSMMDG00005019486	ENSMMDG00005019487	snx15 (ENSMMDG00005019490)	prox3 (ENSMMDG00005019492)	tmem179ba (ENSMMDG00005019495)	ENSMMDG00005019497	brms1 (ENSMMDG00005019500)	ppp1r14bb (ENSMMDG00005019504)
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00940000176150	ENSGT00940000166331
Tiger tail seahorse	MODERN SPECIES	506	zgc:112271 (ENSHCOG00000011345)	slx1b (ENSHCOG00000011332)	ENSHCOG00000011322	ENSHCOG00000011313	PCDH7 (ENSHCOG00000011283)	STIM2 (ENSHCOG00000011263)	ENSHCOG00000011243	pik3c3 (ENSHCOG00000011229)	MSMP (ENSHCOG00000011202)	rgp1 (ENSHCOG00000011189)	GBA2 (ENSHCOG00000011163)	ENSHCOG00000011100	ENSHCOG00000011083	ENSHCOG00000011073	zdhhc21 (ENSHCOG00000011062)	NFIB (ENSHCOG00000011049) ##22	TESK1 (ENSHCOG00000011012)	faah2b (ENSHCOG00000010968)	nelfa (ENSHCOG00000010961)	C4orf48 (ENSHCOG00000010950)	nat8l (ENSHCOG00000010946)	ENSHCOG00000010939	haus3 (ENSHCOG00000010918)	ptgr1.1 (ENSHCOG00000010905)	ENSHCOG00000010900	ENSHCOG00000010889	ENSHCOG00000010878	ENSHCOG00000010869	ENSHCOG00000010847	slc7a8a (ENSHCOG00000010836)	ENSHCOG00000010817
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Carangaria	ANCESTRAL SPECIES	20	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Carangaria_A	ANCESTRAL SPECIES	32	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT01030000236063	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00900000141164.r.b	ENSGT00940000165651.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Seriola	ANCESTRAL SPECIES	92	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT01030000236063	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f
Yellowtail amberjack	MODERN SPECIES	2228	rpl34 (ENSSLDG00000005003)	ostc (ENSSLDG00000005031)	etnppl (ENSSLDG00000005050)	ENSSLDG00000005089	ENSSLDG00000005109	larp7 (ENSSLDG00000005128)	ENSSLDG00000005155	ENSSLDG00000005235	ENSSLDG00000005323	plin2 (ENSSLDG00000005348)	cdca9 (ENSSLDG00000005365)	DENND4C (ENSSLDG00000005431)	haus6 (ENSSLDG00000005675)	plaa (ENSSLDG00000005765)	zdhhc21 (ENSSLDG00000005836)	NFIB (ENSSLDG00000005903) ##22	BANK1 (ENSSLDG00000005997)	PPP3CA (ENSSLDG00000006119)	DDIT4L (ENSSLDG00000006203)	ENSSLDG00000006218	ENSSLDG00000006266
Greater amberjack	MODERN SPECIES	104	ENSSDUG00000007207	rpl34 (ENSSDUG00000007177)	ostc (ENSSDUG00000007161)	etnppl (ENSSDUG00000007097)	ENSSDUG00000007084	larp7 (ENSSDUG00000007045)	ENSSDUG00000007032	ENSSDUG00000007005	ENSSDUG00000006980	plin2 (ENSSDUG00000006963)	ENSSDUG00000006954	DENND4C (ENSSDUG00000006749)	haus6 (ENSSDUG00000006666)	plaa (ENSSDUG00000006606)	zdhhc21 (ENSSDUG00000006576)	NFIB (ENSSDUG00000006547) ##22	BANK1 (ENSSDUG00000006487)	PPP3CA (ENSSDUG00000006403)	DDIT4L (ENSSDUG00000006391)	ENSSDUG00000006372	ENSSDUG00000006356
Barramundi perch	MODERN SPECIES	17	SLC24A2 (ENSLCAG00010017053)	rpl34 (ENSLCAG00010017061)	ostc (ENSLCAG00010017065)	etnppl (ENSLCAG00010017071)	ENSLCAG00010017099	larp7 (ENSLCAG00010017103)	ENSLCAG00010017106	ADAMTSL1 (ENSLCAG00010017109)	plin2 (ENSLCAG00010017124)	ENSLCAG00010017129	DENND4C (ENSLCAG00010017140)	haus6 (ENSLCAG00010017194)	plaa (ENSLCAG00010017203)	ENSLCAG00010017207	zdhhc21 (ENSLCAG00010017209)	NFIB (ENSLCAG00010017217) ##22	BANK1 (ENSLCAG00010017237)	PPP3CA (ENSLCAG00010017315)	DDIT4L (ENSLCAG00010018169)	ENSLCAG00010018194	pcxb (ENSLCAG00010018212)	ENSLCAG00010018228	ENSLCAG00010018230	slc3a2a (ENSLCAG00010018234)	snx15 (ENSLCAG00010018239)	prox3 (ENSLCAG00010018245)	tmem179ba (ENSLCAG00010018249)	brms1 (ENSLCAG00010018256)	ppp1r14bb (ENSLCAG00010018283)	plcb3 (ENSLCAG00010018321)
Pleuronectoidei	ANCESTRAL SPECIES	17	ENSGT00390000007332	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539
Turbot	MODERN SPECIES	16	msrb3 (ENSSMAG00000033612)	hmga2 (ENSSMAG00000019582)	ENSSMAG00000030720	dera (ENSSMAG00000019573)	MGST1 (ENSSMAG00000037225)	mgst1.1 (ENSSMAG00000019548)	lmo3 (ENSSMAG00000019539)	arhgef39 (ENSSMAG00000019522)	RERGL (ENSSMAG00000019508)	ENSSMAG00000019466	ENSSMAG00000019464	ENSSMAG00000019441	ENSSMAG00000019421	ENSSMAG00000019189	ENSSMAG00000019168	ENSSMAG00000019060 ##22	BANK1 (ENSSMAG00000019045)	ENSSMAG00000018957	DDIT4L (ENSSMAG00000018933)	ENSSMAG00000018168	ENSSMAG00000018204	ENSSMAG00000018160	ENSSMAG00000018104	ENSSMAG00000018069	ENSSMAG00000018044	snx15 (ENSSMAG00000018024)	ENSSMAG00000018015	tmem179ba (ENSSMAG00000017975)	brms1 (ENSSMAG00000017913)	ppp1r14bb (ENSSMAG00000017898)	plcb3 (ENSSMAG00000017856)
Tongue sole	MODERN SPECIES		ENSCSEG00000007006	rpl34 (ENSCSEG00000007040)	ostc (ENSCSEG00000007086)	etnppl (ENSCSEG00000007057)	ENSCSEG00000008890	larp7 (ENSCSEG00000009088)	ENSCSEG00000009092	ENSCSEG00000009103	ENSCSEG00000009122	ENSCSEG00000009178	plin2 (ENSCSEG00000009156)	DENND4C (ENSCSEG00000009228)	haus6 (ENSCSEG00000009391)	plaa (ENSCSEG00000009426)	zdhhc21 (ENSCSEG00000009439)	NFIB (ENSCSEG00000009465) ##22	PPP3CA (ENSCSEG00000009514)	DDIT4L (ENSCSEG00000009559)	ENSCSEG00000009563	ENSCSEG00000009580	ENSCSEG00000009596	DCTN1 (ENSCSEG00000009630)	tdrd7b (ENSCSEG00000009862)	ENSCSEG00000009898	tmem88b (ENSCSEG00000009933)	ENSCSEG00000009937	DNAH2 (ENSCSEG00000009975)	serpinh2 (ENSCSEG00000010745)	efnb3b (ENSCSEG00000013127)	wrap53 (ENSCSEG00000013133)	GIGYF1 (ENSCSEG00000013151)
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00390000007332	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000156801.g	ENSGT00950000182936.a.a.b.b	ENSGT00940000180552	ENSGT00940000155694.h	ENSGT01090000259997.a.d.b.b.b.b.b	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611
Zig-zag eel	MODERN SPECIES	9	lgi2a (ENSMAMG00000024529)	sepsecs (ENSMAMG00000005628)	ENSMAMG00000005661	RPL34 (ENSMAMG00000005765)	ENSMAMG00000005796	ETNPPL (ENSMAMG00000005807)	ENSMAMG00000005835	ENSMAMG00000005846	ENSMAMG00000028671	ENSMAMG00000005928	ENSMAMG00000005941	ENSMAMG00000005956	ENSMAMG00000006090	ENSMAMG00000006114	ENSMAMG00000006171	ENSMAMG00000006211 ##22	ENSMAMG00000006298	ENSMAMG00000006346	ENSMAMG00000006360	ENSMAMG00000006416	ENSMAMG00000006442	ENSMAMG00000026757	ENSMAMG00000006455	ENSMAMG00000006467	ENSMAMG00000006519	ENSMAMG00000026346	ENSMAMG00000028583	ENSMAMG00000006533	ENSMAMG00000006546	ENSMAMG00000028520	ENSMAMG00000006596
Anabantoidei	ANCESTRAL SPECIES	24	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT01030000236063	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000156801.g	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT01090000259997.a.d.b.b.b.b.b	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000018783	rpl34 (ENSBSLG00000018892)	ostc (ENSBSLG00000018913)	etnppl (ENSBSLG00000018991)	ENSBSLG00000019067	ENSBSLG00000019088	larp7 (ENSBSLG00000019103)	ENSBSLG00000019121	ENSBSLG00000019149	plin2 (ENSBSLG00000019174)	ENSBSLG00000019184	ENSBSLG00000019203	ENSBSLG00000019326	plaa (ENSBSLG00000019346)	zdhhc21 (ENSBSLG00000000111)	NFIB (ENSBSLG00000000183) ##22	ENSBSLG00000000263	PPP3CA (ENSBSLG00000000319)	DDIT4L (ENSBSLG00000000405)	ENSBSLG00000000422	ENSBSLG00000000443	ENSBSLG00000000447	ENSBSLG00000000455	ENSBSLG00000000600	ENSBSLG00000000532	ENSBSLG00000000610	ENSBSLG00000000618	ENSBSLG00000000625	ENSBSLG00000000638	ENSBSLG00000000646	ENSBSLG00000000663
Climbing perch	MODERN SPECIES	9	ENSATEG00000016363	RPL34 (ENSATEG00000016338)	OSTC (ENSATEG00000016319)	ETNPPL (ENSATEG00000016261)	ENSATEG00000029379	COL25A1 (ENSATEG00000029427)	ENSATEG00000027750	ENSATEG00000016238	ENSATEG00000016224	ENSATEG00000016165	ENSATEG00000027846	ENSATEG00000016091	ENSATEG00000016059	ENSATEG00000016008	ENSATEG00000015967	ENSATEG00000015928 ##22	BANK1 (ENSATEG00000015898)	ENSATEG00000015858	DDIT4L (ENSATEG00000015843)	ENSATEG00000015737	ENSATEG00000015722	ENSATEG00000015684	ENSATEG00000015674	ENSATEG00000015633	ENSATEG00000026561	ENSATEG00000020909	ENSATEG00000025690	ENSATEG00000026948	ENSATEG00000029726	ENSATEG00000029339	ENSATEG00000020868
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331
Tetraodontidae	ANCESTRAL SPECIES	29	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT00940000160460	ENSGT00950000183137.b.a	ENSGT00390000015958.d	ENSGT00940000157294.d	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693
Fugu	MODERN SPECIES	20	ENSTRUG00000033268	PPARGC1A (ENSTRUG00000007210)	ccdc149a (ENSTRUG00000030376)	lgi2a (ENSTRUG00000006766)	ENSTRUG00000006161	rpl34 (ENSTRUG00000026991)	ostc (ENSTRUG00000005991)	etnppl (ENSTRUG00000005557)	COL25A1 (ENSTRUG00000026946)	ENSTRUG00000027701	ENSTRUG00000004922	ENSTRUG00000023787	plin2 (ENSTRUG00000004201)	plaa (ENSTRUG00000002447)	zdhhc21 (ENSTRUG00000002191)	NFIB (ENSTRUG00000001510) ##22	ENSTRUG00000026958	ENSTRUG00000028714	ENSTRUG00000030254	ENSTRUG00000032148	ENSTRUG00000008117	ENSTRUG00000033226	ENSTRUG00000031418	ENSTRUG00000027752	eif4e2rs1 (ENSTRUG00000006874)	zgc:158659 (ENSTRUG00000029194)	ENSTRUG00000021980	ENSTRUG00000005538	ATP1B2 (ENSTRUG00000027679)	ENSTRUG00000026651	ENSTRUG00000004570
Tetraodon	MODERN SPECIES	26	SLITRK3 (ENSTNIG00000019735)	ENSTNIG00000014914	ENSTNIG00000014913	ENSTNIG00000018845	rpl34 (ENSTNIG00000018846)	ostc (ENSTNIG00000018847)	etnppl (ENSTNIG00000018848)	ENSTNIG00000007182	larp7 (ENSTNIG00000007183)	ENSTNIG00000002074	plin2 (ENSTNIG00000007184)	DENND4C (ENSTNIG00000007185)	ENSTNIG00000007186	plaa (ENSTNIG00000007187)	ENSTNIG00000007188	NFIB (ENSTNIG00000007189) ##22	ENSTNIG00000007190	ENSTNIG00000001211	ENSTNIG00000005460	ENSTNIG00000005461	ENSTNIG00000005462	ENSTNIG00000002860	eif4e2rs1 (ENSTNIG00000002861)	zgc:158659 (ENSTNIG00000002862)	ENSTNIG00000004826	ASCC3 (ENSTNIG00000005079)	ADGRB1 (ENSTNIG00000007799)	ENSTNIG00000007800	ENSTNIG00000007801	arhgap36 (ENSTNIG00000006770)	ENSTNIG00000006771
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331
Ballan wrasse	MODERN SPECIES	32	SLC24A2 (ENSLBEG00000019874)	rpl34 (ENSLBEG00000019926)	ostc (ENSLBEG00000019949)	etnppl (ENSLBEG00000019967)	COL25A1 (ENSLBEG00000020026)	larp7 (ENSLBEG00000020062)	ENSLBEG00000020084	ENSLBEG00000020131	ENSLBEG00000020199	plin2 (ENSLBEG00000020233)	ENSLBEG00000020267	DENND4C (ENSLBEG00000020364)	haus6 (ENSLBEG00000020802)	plaa (ENSLBEG00000020936)	zdhhc21 (ENSLBEG00000020997)	NFIB (ENSLBEG00000021055) ##22
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331
Perciformes	ANCESTRAL SPECIES	19	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Cottioidei	ANCESTRAL SPECIES	20	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539
Lumpfish	MODERN SPECIES	9	rpl34 (ENSCLMG00005011271)	ostc (ENSCLMG00005011274)	etnppl (ENSCLMG00005011277)	larp7 (ENSCLMG00005011279)	ENSCLMG00005011280	ENSCLMG00005011282	ENSCLMG00005011283	ENSCLMG00005011284	ENSCLMG00005011285	plin2 (ENSCLMG00005011295)	ENSCLMG00005011296	DENND4C (ENSCLMG00005011298)	ENSCLMG00005011360	plaa (ENSCLMG00005011366)	zdhhc21 (ENSCLMG00005011416)	NFIB (ENSCLMG00005011424) ##22	ENSCLMG00005011521	PPP3CA (ENSCLMG00005011573)	ENSCLMG00005017458	DDIT4L (ENSCLMG00005017459)	ENSCLMG00005017460	ENSCLMG00005017461	pcxb (ENSCLMG00005017462)	ENSCLMG00005017476	slc3a2a (ENSCLMG00005017478)	snx15 (ENSCLMG00005017479)	prox3 (ENSCLMG00005017480)	tmem179ba (ENSCLMG00005017481)	brms1 (ENSCLMG00005017482)	ppp1r14bb (ENSCLMG00005017483)	plcb3 (ENSCLMG00005017505)
Stickleback	MODERN SPECIES	7	lgi2a (ENSGACG00000019575)	sepsecs (ENSGACG00000019587)	ENSGACG00000019590	rpl34 (ENSGACG00000019593)	ostc (ENSGACG00000019601)	etnppl (ENSGACG00000019605)	larp7 (ENSGACG00000019618)	ENSGACG00000019629	plin2 (ENSGACG00000019638)	ENSGACG00000019649	DENND4C (ENSGACG00000019650)	ENSGACG00000019655	ENSGACG00000019656	plaa (ENSGACG00000019658)	zdhhc21 (ENSGACG00000019672)	NFIB (ENSGACG00000019677) ##22	ENSGACG00000019686	PPP3CA (ENSGACG00000019688)	ENSGACG00000019699	DDIT4L (ENSGACG00000019700)	ENSGACG00000019701	ENSGACG00000019708	pcxb (ENSGACG00000019710)	ENSGACG00000019743	ENSGACG00000019745	snx15 (ENSGACG00000019747)	ENSGACG00000019750	tmem179ba (ENSGACG00000019751)	brms1 (ENSGACG00000019753)	ENSGACG00000019757	ppp1r14bb (ENSGACG00000019758)
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00390000007332	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Channel bull blenny	MODERN SPECIES	9	ENSCGOG00000012273	sepsecs (ENSCGOG00000012276)	SLC24A2 (ENSCGOG00000012334)	rpl34 (ENSCGOG00000012341)	ostc (ENSCGOG00000012347)	etnppl (ENSCGOG00000012362)	larp7 (ENSCGOG00000012378)	ENSCGOG00000012543	ADAMTSL1 (ENSCGOG00000012548)	plin2 (ENSCGOG00000012575)	ENSCGOG00000012603	DENND4C (ENSCGOG00000012628)	haus6 (ENSCGOG00000013333)	plaa (ENSCGOG00000013342)	zdhhc21 (ENSCGOG00000013541)	NFIB (ENSCGOG00000013550) ##22	ENSCGOG00000013627	PPP3CA (ENSCGOG00000013678)	PPP3CB (ENSCGOG00000013732)	DDIT4L (ENSCGOG00000013735)	ENSCGOG00000013737	ENSCGOG00000013750	ENSCGOG00000013754	pcxb (ENSCGOG00000013813)	ENSCGOG00000016042	ENSCGOG00000016047	ENSCGOG00000016081	slc3a2a (ENSCGOG00000016085)	snx15 (ENSCGOG00000016091)	prox3 (ENSCGOG00000016094)	tmem179ba (ENSCGOG00000016096)
Pike perch	MODERN SPECIES	65	lgi2a (ENSSLUG00000023568)	sepsecs (ENSSLUG00000023584)	SLC24A2 (ENSSLUG00000023616)	rpl34 (ENSSLUG00000023670)	ostc (ENSSLUG00000023673)	etnppl (ENSSLUG00000023691)	larp7 (ENSSLUG00000023715)	ENSSLUG00000023721	ENSSLUG00000023725	plin2 (ENSSLUG00000023736)	ENSSLUG00000023743	DENND4C (ENSSLUG00000023788)	haus6 (ENSSLUG00000023864)	plaa (ENSSLUG00000023886)	zdhhc21 (ENSSLUG00000023908)	NFIB (ENSSLUG00000023914) ##22	BANK1 (ENSSLUG00000023931)	PPP3CA (ENSSLUG00000023960)	ENSSLUG00000024286	DDIT4L (ENSSLUG00000024289)	ENSSLUG00000024298	ENSSLUG00000024306	pcxb (ENSSLUG00000024376)	ENSSLUG00000024712	ENSSLUG00000024714	slc3a2a (ENSSLUG00000024715)	snx15 (ENSSLUG00000024716)	prox3 (ENSSLUG00000024719)	tmem179ba (ENSSLUG00000024721)	brms1 (ENSSLUG00000024723)	ppp1r14bb (ENSSLUG00000024725)
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00390000007332	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125.d	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19	ENSGT00390000007332	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000178571	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00990000213447	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125.d	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331
European seabass	MODERN SPECIES	16	lgi2a (ENSDLAG00005028049)	sepsecs (ENSDLAG00005022341)	ENSDLAG00005027613	OSTC (ENSDLAG00005033655)	ENSDLAG00005022260	COL25A1 (ENSDLAG00005027354)	ENSDLAG00005022185	ENSDLAG00005022182	ENSDLAG00005022094	ENSDLAG00005022090	ENSDLAG00005021856	ENSDLAG00005021873	ENSDLAG00005021817	ENSDLAG00005021759	ENSDLAG00005021746	ENSDLAG00005021687 ##22	BANK1 (ENSDLAG00005021567)	ENSDLAG00005020224	ENSDLAG00005020155	DDIT4L (ENSDLAG00005033814)	ENSDLAG00005020039	ENSDLAG00005034162	ENSDLAG00005027359	ENSDLAG00005019774	ENSDLAG00005019754	ENSDLAG00005019747	snx15 (ENSDLAG00005019744)	ENSDLAG00005019737	tmem179ba (ENSDLAG00005027982)	ENSDLAG00005028278	brms1 (ENSDLAG00005019691)
Large yellow croaker	MODERN SPECIES	2	lgi2a (ENSLCRG00005012703)	sepsecs (ENSLCRG00005012684)	SLC24A2 (ENSLCRG00005012682)	rpl34 (ENSLCRG00005012680)	ostc (ENSLCRG00005012676)	etnppl (ENSLCRG00005012338)	COL25A1 (ENSLCRG00005012329)	larp7 (ENSLCRG00005012321)	ENSLCRG00005012320	ADAMTSL1 (ENSLCRG00005012086)	plin2 (ENSLCRG00005012083)	DENND4C (ENSLCRG00005011806)	haus6 (ENSLCRG00005011786)	plaa (ENSLCRG00005011720)	zdhhc21 (ENSLCRG00005011700)	NFIB (ENSLCRG00005011270) ##22	ENSLCRG00005011266	ENSLCRG00005011263	PPP3CA (ENSLCRG00005010890)	DDIT4L (ENSLCRG00005010880)	ENSLCRG00005010879	ENSLCRG00005010877	ENSLCRG00005010876	ENSLCRG00005010874	pcxb (ENSLCRG00005009469)	ENSLCRG00005009448	slc3a2a (ENSLCRG00005009447)	ENSLCRG00005009445	ENSLCRG00005009441	prox3 (ENSLCRG00005009436)	tmem179ba (ENSLCRG00005009433)
Gilthead seabream	MODERN SPECIES	1	ENSSAUG00010026736	ENSSAUG00010026742	lgi2a (ENSSAUG00010026751)	sepsecs (ENSSAUG00010026768)	SLC24A2 (ENSSAUG00010026777)	rpl34 (ENSSAUG00010026778)	ostc (ENSSAUG00010026779)	etnppl (ENSSAUG00010026790)	larp7 (ENSSAUG00010026793)	plin2 (ENSSAUG00010026804)	ENSSAUG00010026805	DENND4C (ENSSAUG00010026811)	haus6 (ENSSAUG00010026875)	plaa (ENSSAUG00010026879)	zdhhc21 (ENSSAUG00010026889)	NFIB (ENSSAUG00010026891) ##22	ENSSAUG00010026904	PPP3CA (ENSSAUG00010026929)	DDIT4L (ENSSAUG00010027011)	ENSSAUG00010027020	ENSSAUG00010027027	pcxb (ENSSAUG00010027042)	ENSSAUG00010027046	ENSSAUG00010027047	slc3a2a (ENSSAUG00010027055)	snx15 (ENSSAUG00010027071)	ENSSAUG00010027073	prox3 (ENSSAUG00010027074)	tmem179ba (ENSSAUG00010027075)	brms1 (ENSSAUG00010027077)	ppp1r14bb (ENSSAUG00010027078)
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693.f	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331
Cyprinodontiformes	ANCESTRAL SPECIES	22	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693.f	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Aplocheiloidei	ANCESTRAL SPECIES	65	ENSGT00390000007332	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693.f	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00970000196969
Mangrove rivulus	MODERN SPECIES	29	sepsecs (ENSKMAG00000005232)	DENND4C (ENSKMAG00000005171)	ENSKMAG00000005127	plin2 (ENSKMAG00000005106)	ENSKMAG00000005088	ENSKMAG00000005074	larp7 (ENSKMAG00000005057)	COL25A1 (ENSKMAG00000004934)	etnppl (ENSKMAG00000004865)	ostc (ENSKMAG00000004843)	rpl34 (ENSKMAG00000004831)	ENSKMAG00000004722	zdhhc21 (ENSKMAG00000004659)	plaa (ENSKMAG00000004591)	ENSKMAG00000004534	NFIB (ENSKMAG00000004458) ##22	PPP3CA (ENSKMAG00000004390)	DDIT4L (ENSKMAG00000004380)	ENSKMAG00000004373	ENSKMAG00000004348	ENSKMAG00000004317	pcxb (ENSKMAG00000004192)	ENSKMAG00000004175	slc3a2a (ENSKMAG00000004158)	snx15 (ENSKMAG00000004147)	ENSKMAG00000004132
Turquoise killifish	MODERN SPECIES	1613	SEPSECS (ENSNFUG00015010637)	ENSNFUG00015010659	ostc (ENSNFUG00015010678)	RPL34 (ENSNFUG00015010687)	etnppl (ENSNFUG00015010717)	larp7 (ENSNFUG00015010820)	ENSNFUG00015010970	ADAMTSL1 (ENSNFUG00015010990)	ENSNFUG00015010999	ENSNFUG00015011002	plin2 (ENSNFUG00015011006)	ENSNFUG00015011026	HAUS6 (ENSNFUG00015011045)	plaa (ENSNFUG00015011156)	ZDHHC21 (ENSNFUG00015011401)	NFIB (ENSNFUG00015011447) ##22	ENSNFUG00015011569	ENSNFUG00015011573	ENSNFUG00015011584	ENSNFUG00015011589	PPP3CA (ENSNFUG00015011624)	ENSNFUG00015011891	ENSNFUG00015011893	DDIT4L (ENSNFUG00015011896)	TMEM179B (ENSNFUG00015011900)	BRMS1 (ENSNFUG00015011907)	PPP1R14B (ENSNFUG00015011920)	PLCB3 (ENSNFUG00015011945)	ENSNFUG00015012065	slc8a4b (ENSNFUG00015012074)	BAD (ENSNFUG00015012161)
Cyprinodontoidei	ANCESTRAL SPECIES	21	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539
Poeciliinae	ANCESTRAL SPECIES	21	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013762.a.f	ENSGT00900000141164.r.b	ENSGT00940000165651.b	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539
Poecilia	ANCESTRAL SPECIES	48	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693.f	ENSGT00390000013762.a.f	ENSGT00900000141164.r.b	ENSGT00940000165651.b	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
NAME_6	ANCESTRAL SPECIES	167	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693.f
Amazon molly	MODERN SPECIES	361	ENSPFOG00000000476	rpl34 (ENSPFOG00000000440)	ostc (ENSPFOG00000000415)	etnppl (ENSPFOG00000022180)	COL25A1 (ENSPFOG00000000329)	ENSPFOG00000000314	larp7 (ENSPFOG00000000265)	ENSPFOG00000000245	ADAMTSL1 (ENSPFOG00000000171)	plin2 (ENSPFOG00000000129)	ENSPFOG00000000121	DENND4C (ENSPFOG00000000092)	ENSPFOG00000000081	plaa (ENSPFOG00000000075)	zdhhc21 (ENSPFOG00000000070)	NFIB (ENSPFOG00000000065) ##22	ENSPFOG00000000060	PPP3CA (ENSPFOG00000000045)	DDIT4L (ENSPFOG00000000042)	ENSPFOG00000000033
Sailfin molly	MODERN SPECIES	126							larp7 (ENSPLAG00000012181)	ENSPLAG00000012200	ENSPLAG00000012212	plin2 (ENSPLAG00000012220)	ENSPLAG00000012227	DENND4C (ENSPLAG00000012320)	ENSPLAG00000000266	plaa (ENSPLAG00000000269)	zdhhc21 (ENSPLAG00000012396)	NFIB (ENSPLAG00000012426) ##22
Guppy	MODERN SPECIES	448	sepsecs (ENSPREG00000019358)	SLC24A2 (ENSPREG00000019395)	rpl34 (ENSPREG00000019431)	ostc (ENSPREG00000019453)	etnppl (ENSPREG00000019475)	larp7 (ENSPREG00000019513)	ENSPREG00000019534	ENSPREG00000019555	ENSPREG00000019569	plin2 (ENSPREG00000019580)	ENSPREG00000019591	DENND4C (ENSPREG00000019613)	ENSPREG00000019666	plaa (ENSPREG00000019752)	zdhhc21 (ENSPREG00000019810)	NFIB (ENSPREG00000019859) ##22	ENSPREG00000019896	PPP3CA (ENSPREG00000019921)	DDIT4L (ENSPREG00000019942)	ENSPREG00000019956	pcxb (ENSPREG00000020000)	ENSPREG00000020067	ENSPREG00000020093	ENSPREG00000020118	ENSPREG00000020138	snx15 (ENSPREG00000020149)	prox3 (ENSPREG00000020160)	tmem179ba (ENSPREG00000020173)	si:ch211-285j22.3 (ENSPREG00000020184)	brms1 (ENSPREG00000020193)	ppp1r14bb (ENSPREG00000020224)
Platyfish	MODERN SPECIES	5	ENSXMAG00000027969	lgi2a (ENSXMAG00000008444)	sepsecs (ENSXMAG00000008452)	ENSXMAG00000008464	ostc (ENSXMAG00000025929)	etnppl (ENSXMAG00000028512)	larp7 (ENSXMAG00000008479)	ENSXMAG00000008487	ADAMTSL1 (ENSXMAG00000008488)	ENSXMAG00000026993	plin2 (ENSXMAG00000008491)	DENND4C (ENSXMAG00000008498)	haus6 (ENSXMAG00000029941)	plaa (ENSXMAG00000008506)	zdhhc21 (ENSXMAG00000008523)	NFIB (ENSXMAG00000008538) ##22	ENSXMAG00000008559	PPP3CA (ENSXMAG00000008560)	DDIT4L (ENSXMAG00000022743)	ENSXMAG00000005888	ENSXMAG00000023753	pcxb (ENSXMAG00000008574)	ENSXMAG00000024139	ENSXMAG00000029159	slc3a2a (ENSXMAG00000008626)	snx15 (ENSXMAG00000026422)	prox3 (ENSXMAG00000022382)	tmem179ba (ENSXMAG00000027159)	si:ch211-285j22.3 (ENSXMAG00000019523)	brms1 (ENSXMAG00000008643)	ppp1r14bb (ENSXMAG00000025753)
NAME_4	ANCESTRAL SPECIES	89	ENSGT00390000007332	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00940000181945	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Mummichog	MODERN SPECIES	2374															zdhhc21 (ENSFHEG00000009925)	NFIB (ENSFHEG00000010053) ##22	PPP3CA (ENSFHEG00000010077)	ENSFHEG00000010086	DDIT4L (ENSFHEG00000010090)	ENSFHEG00000010095	ENSFHEG00000010190	ENSFHEG00000010276	pcxb (ENSFHEG00000010369)	ENSFHEG00000010378	slc3a2a (ENSFHEG00000010390)	snx15 (ENSFHEG00000010396)	prox3 (ENSFHEG00000010411)	tmem179ba (ENSFHEG00000010424)	si:ch211-285j22.3 (ENSFHEG00000010429)	brms1 (ENSFHEG00000010440)	ppp1r14bb (ENSFHEG00000010452)
Sheepshead minnow	MODERN SPECIES	205										plin2 (ENSCVAG00000015304)	ENSCVAG00000015314	DENND4C (ENSCVAG00000015506)	ENSCVAG00000015565	plaa (ENSCVAG00000015614)	zdhhc21 (ENSCVAG00000015652)	NFIB (ENSCVAG00000015678) ##22	ENSCVAG00000015703	PPP3CA (ENSCVAG00000015759)	DDIT4L (ENSCVAG00000015778)	ENSCVAG00000015890	ENSCVAG00000015913	ENSCVAG00000015938	pcxb (ENSCVAG00000016055)	ENSCVAG00000016070	ENSCVAG00000016080	snx15 (ENSCVAG00000016085)	prox3 (ENSCVAG00000016093)	tmem179ba (ENSCVAG00000016099)	si:ch211-285j22.3 (ENSCVAG00000016108)	brms1 (ENSCVAG00000016237)	ppp1r14bb (ENSCVAG00000016257)
Oryzias	ANCESTRAL SPECIES	21	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693.f	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539
Oryzias_b	ANCESTRAL SPECIES	18	ENSGT00390000007332	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a
Indian medaka	MODERN SPECIES	19	SLC24A2 (ENSOMEG00000006308)	rpl34 (ENSOMEG00000006389)	ostc (ENSOMEG00000006412)	etnppl (ENSOMEG00000006448)	COL25A1 (ENSOMEG00000006833)	larp7 (ENSOMEG00000006920)	ENSOMEG00000006939	ENSOMEG00000006961	ENSOMEG00000007016	ENSOMEG00000007048	plin2 (ENSOMEG00000007065)	DENND4C (ENSOMEG00000007166)	ENSOMEG00000007219	plaa (ENSOMEG00000007273)	zdhhc21 (ENSOMEG00000000948)	NFIB (ENSOMEG00000007380) ##22	ENSOMEG00000007427	PPP3CA (ENSOMEG00000007511)	DDIT4L (ENSOMEG00000007560)	ENSOMEG00000007594	ENSOMEG00000007609	pcxb (ENSOMEG00000007719)	SLC3A2 (ENSOMEG00000007823)	snx15 (ENSOMEG00000007842)	prox3 (ENSOMEG00000007863)	tmem179ba (ENSOMEG00000007901)	brms1 (ENSOMEG00000007933)	ppp1r14bb (ENSOMEG00000007960)	plcb3 (ENSOMEG00000008118)	slc8a4b (ENSOMEG00000008263)	ENSOMEG00000008313
Javanese ricefish	MODERN SPECIES	9	sepsecs (ENSOJAG00000013136)	SLC24A2 (ENSOJAG00000013120)	rpl34 (ENSOJAG00000013084)	ostc (ENSOJAG00000013035)	etnppl (ENSOJAG00000012942)	ENSOJAG00000012922	larp7 (ENSOJAG00000012909)	ENSOJAG00000012900	ENSOJAG00000012891	plin2 (ENSOJAG00000012882)	ENSOJAG00000012873	DENND4C (ENSOJAG00000012692)	ENSOJAG00000012564	plaa (ENSOJAG00000012010)	zdhhc21 (ENSOJAG00000011974)	NFIB (ENSOJAG00000011889) ##22	ENSOJAG00000011862	PPP3CA (ENSOJAG00000011436)	DDIT4L (ENSOJAG00000011375)	ENSOJAG00000011365	ENSOJAG00000011355	pcxb (ENSOJAG00000010733)	ENSOJAG00000010603	SLC3A2 (ENSOJAG00000010590)	snx15 (ENSOJAG00000010581)	prox3 (ENSOJAG00000020644)	tmem179ba (ENSOJAG00000020636)	brms1 (ENSOJAG00000020625)	ppp1r14bb (ENSOJAG00000020615)	slc8a4b (ENSOJAG00000019561)	zgc:101765 (ENSOJAG00000019498)
Oryzias_a	ANCESTRAL SPECIES	27	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00390000005970	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693.f	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160330	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539
Japanese Medaka HdrR	MODERN SPECIES	9	ostc (ENSORLG00000004900)	etnppl (ENSORLG00000004922)	COL25A1 (ENSORLG00000004934)	larp7 (ENSORLG00000004978)	ENSORLG00000027637	ENSORLG00000022811	ENSORLG00000005000	ENSORLG00000021989	ENSORLG00000026147	ENSORLG00000005041	plin2 (ENSORLG00000030481)	DENND4C (ENSORLG00000005090)	ENSORLG00000005097	plaa (ENSORLG00000005124)	zdhhc21 (ENSORLG00000005132)	NFIB (ENSORLG00000005185) ##22	ENSORLG00000005223	ENSORLG00000024971	DDIT4L (ENSORLG00000030486)	ENSORLG00000005265	ENSORLG00000005287	pcxb (ENSORLG00000005298)	ENSORLG00000005321	ENSORLG00000028848	slc3a2a (ENSORLG00000005367)	snx15 (ENSORLG00000005383)	prox3 (ENSORLG00000024210)	tmem179ba (ENSORLG00000005394)	ENSORLG00000027489	brms1 (ENSORLG00000005411)	ppp1r14bb (ENSORLG00000028526)
Chinese medaka	MODERN SPECIES	335	sepsecs (ENSOSIG00000017745)	SLC24A2 (ENSOSIG00000017737)	rpl34 (ENSOSIG00000017720)	ostc (ENSOSIG00000017716)	COL25A1 (ENSOSIG00000017705)	ENSOSIG00000017680	larp7 (ENSOSIG00000017676)	ENSOSIG00000017669	ENSOSIG00000017666	plin2 (ENSOSIG00000017655)	ENSOSIG00000017652	ENSOSIG00000017523	ENSOSIG00000017488	plaa (ENSOSIG00000017253)	zdhhc21 (ENSOSIG00000017243)	NFIB (ENSOSIG00000017233) ##22	PPP3CA (ENSOSIG00000017111)	DDIT4L (ENSOSIG00000017071)	ENSOSIG00000017068	ENSOSIG00000017063	ENSOSIG00000017060	pcxb (ENSOSIG00000015035)	ENSOSIG00000015026	slc3a2a (ENSOSIG00000015024)	snx15 (ENSOSIG00000015022)	tmem179ba (ENSOSIG00000015020)	brms1 (ENSOSIG00000015017)	ppp1r14bb (ENSOSIG00000015016)	slc8a4b (ENSOSIG00000014469)	gpha2 (ENSOSIG00000014468)	ENSOSIG00000014467
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Pomacentridae	ANCESTRAL SPECIES	28	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Pomacentridae_A	ANCESTRAL SPECIES	22	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a
Amphiprion	ANCESTRAL SPECIES	43										ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a
Orange clownfish	MODERN SPECIES	15	ostc (ENSAPEG00000022258)	ENSAPEG00000022222	ELP1 (ENSAPEG00000022178)	plin2 (ENSAPEG00000022161)	ENSAPEG00000022147	DENND4C (ENSAPEG00000022009)	ENSAPEG00000021962	ENSAPEG00000021893	ENSAPEG00000021867	ENSAPEG00000021863	larp7 (ENSAPEG00000021823)	etnppl (ENSAPEG00000021767)	ENSAPEG00000021720	plaa (ENSAPEG00000021678)	zdhhc21 (ENSAPEG00000021644)	NFIB (ENSAPEG00000021618) ##22	ENSAPEG00000021533	PPP3CA (ENSAPEG00000021489)	DDIT4L (ENSAPEG00000021471)	ENSAPEG00000021426	ENSAPEG00000021404	pcxb (ENSAPEG00000021274)	slc3a2a (ENSAPEG00000021232)	ENSAPEG00000021221	snx15 (ENSAPEG00000021203)	ENSAPEG00000021181	tmem179ba (ENSAPEG00000021161)	si:ch211-285j22.3 (ENSAPEG00000021151)	brms1 (ENSAPEG00000021133)	ppp1r14bb (ENSAPEG00000021114)	plcb3 (ENSAPEG00000021001)
Clown anemonefish	MODERN SPECIES	753													haus6 (ENSAOCG00000016532)	plaa (ENSAOCG00000016572)	zdhhc21 (ENSAOCG00000016612)	NFIB (ENSAOCG00000016656) ##22	ENSAOCG00000016700	ENSAOCG00000016719	PPP3CA (ENSAOCG00000016839)	DDIT4L (ENSAOCG00000016868)	ENSAOCG00000016888
Spiny chromis	MODERN SPECIES	29				ENSAPOG00000024212	zgc:101765 (ENSAPOG00000024194)	slc8a4b (ENSAPOG00000024121)	plcb3 (ENSAPOG00000024044)	ppp1r14bb (ENSAPOG00000023980)	brms1 (ENSAPOG00000023974)	si:ch211-285j22.3 (ENSAPOG00000023940)	tmem179ba (ENSAPOG00000023916)	prox3 (ENSAPOG00000023882)	snx15 (ENSAPOG00000023849)	plaa (ENSAPOG00000023834)	zdhhc21 (ENSAPOG00000023746)	NFIB (ENSAPOG00000023677) ##22	BANK1 (ENSAPOG00000023557)	PPP3CA (ENSAPOG00000023432)	DDIT4L (ENSAPOG00000023267)	ENSAPOG00000023253	pcxb (ENSAPOG00000023217)	ENSAPOG00000023094	ENSAPOG00000023078	ENSAPOG00000023059	slc3a2a (ENSAPOG00000023046)	p2rx7 (ENSAPOG00000022980)	ENSAPOG00000022915	DENND4C (ENSAPOG00000022827)	plin2 (ENSAPOG00000022596)	ENSAPOG00000022609	ENSAPOG00000022580
Bicolor damselfish	MODERN SPECIES	1351											plin2 (ENSSPAG00000019232)	DENND4C (ENSSPAG00000019065)	ENSSPAG00000019014	plaa (ENSSPAG00000018969)	zdhhc21 (ENSSPAG00000018939)	NFIB (ENSSPAG00000018917) ##22
Cichlidae	ANCESTRAL SPECIES	20	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910.a	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910.a	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	23	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910.a	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243	ENSGT00390000005970	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Haplochromini	ANCESTRAL SPECIES	28	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910.a	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000159642.e	ENSGT00940000156243.mb	ENSGT00390000005970	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Haplochromini_A	ANCESTRAL SPECIES	38	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910.a	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000156243.lb	ENSGT00940000159642.e	ENSGT00940000156243.mb	ENSGT00390000005970	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Haplochromini_B	ANCESTRAL SPECIES	25	ENSGT00390000008294	ENSGT00390000001376	ENSGT00940000157910.a	ENSGT00940000159823	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000156243.lb	ENSGT00940000159642.e	ENSGT00940000156243.mb	ENSGT00390000005970	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b ##22	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000165651.b	ENSGT00900000141164.r.b	ENSGT00940000160303.a.a	ENSGT00940000156646.c	ENSGT00940000160125	ENSGT00940000154790.a.b	ENSGT00510000048151.a	ENSGT00770000120838.A	ENSGT00940000166331	ENSGT00950000182985.b.b.sc
Zebra mbuna	MODERN SPECIES	1106	SLC24A2 (ENSMZEG00005001969)	rpl34 (ENSMZEG00005001997)	ostc (ENSMZEG00005002057)	etnppl (ENSMZEG00005002019)	ENSMZEG00005002072	larp7 (ENSMZEG00005002084)	ENSMZEG00005002100	ENSMZEG00005002105	ENSMZEG00005002178	ENSMZEG00005002216	plin2 (ENSMZEG00005002224)	DENND4C (ENSMZEG00005002264)	ENSMZEG00005002374	plaa (ENSMZEG00005002404)	zdhhc21 (ENSMZEG00005002434)	NFIB (ENSMZEG00005002467) ##22	ENSMZEG00005002523	PPP3CA (ENSMZEG00005002547)	DDIT4L (ENSMZEG00005002599)	ENSMZEG00005002614	ENSMZEG00005002689	pcxb (ENSMZEG00005002715)	ENSMZEG00005002788	ENSMZEG00005002823	slc3a2a (ENSMZEG00005002842)	snx15 (ENSMZEG00005002849)	prox3 (ENSMZEG00005002858)	tmem179ba (ENSMZEG00005002862)	si:ch211-285j22.3 (ENSMZEG00005002868)	brms1 (ENSMZEG00005002894)	ppp1r14bb (ENSMZEG00005002913)
Eastern happy	MODERN SPECIES	15	SLC24A2 (ENSACLG00000000199)	rpl34 (ENSACLG00000023428)	ostc (ENSACLG00000023420)	etnppl (ENSACLG00000023369)	COL25A1 (ENSACLG00000023203)	larp7 (ENSACLG00000023184)	ENSACLG00000023178	ENSACLG00000023155	ENSACLG00000023151	ENSACLG00000022975	plin2 (ENSACLG00000022990)	DENND4C (ENSACLG00000022766)	ENSACLG00000022725	plaa (ENSACLG00000022649)	zdhhc21 (ENSACLG00000022617)	NFIB (ENSACLG00000022544) ##22	ENSACLG00000022465	ENSACLG00000022322	DDIT4L (ENSACLG00000022303)	ENSACLG00000022234	ENSACLG00000022184	ENSACLG00000022170	ENSACLG00000022149	ENSACLG00000022140	pcxb (ENSACLG00000022114)	ENSACLG00000022086	zgc:158423 (ENSACLG00000022026)	snx15 (ENSACLG00000022010)	prox3 (ENSACLG00000021996)	tmem179ba (ENSACLG00000021977)	brms1 (ENSACLG00000021905)
P. nyererei	MODERN SPECIES	506												DENND4C (ENSPNYG00000021922)	haus6 (ENSPNYG00000021852)	plaa (ENSPNYG00000021816)	zdhhc21 (ENSPNYG00000021792)	NFIB (ENSPNYG00000021742) ##22	ENSPNYG00000021703	PPP3CA (ENSPNYG00000021649)	DDIT4L (ENSPNYG00000021625)	ENSPNYG00000021612	ENSPNYG00000021558	ENSPNYG00000021533	PC (ENSPNYG00000021491)	slc3a2a (ENSPNYG00000021444)	snx15 (ENSPNYG00000021411)	prox3 (ENSPNYG00000021381)	tmem179ba (ENSPNYG00000021362)	si:ch211-285j22.3 (ENSPNYG00000021350)	brms1 (ENSPNYG00000021336)	ppp1r14bb (ENSPNYG00000021318)	plcb3 (ENSPNYG00000021207)
Burton s mouthbrooder	MODERN SPECIES	358	SLC24A2 (ENSHBUG00000019534)	rpl34 (ENSHBUG00000019460)	ostc (ENSHBUG00000019334)	etnppl (ENSHBUG00000019415)	COL25A1 (ENSHBUG00000019304)	larp7 (ENSHBUG00000019223)	ENSHBUG00000019215	ENSHBUG00000019208	ENSHBUG00000019194	plin2 (ENSHBUG00000019172)	ENSHBUG00000019182	ENSHBUG00000019148	ENSHBUG00000019124	plaa (ENSHBUG00000019109)	zdhhc21 (ENSHBUG00000019087)	NFIB (ENSHBUG00000019049) ##22	BANK1 (ENSHBUG00000019000)	ENSHBUG00000018985	DDIT4L (ENSHBUG00000018898)	ENSHBUG00000018874	pcxb (ENSHBUG00000018780)	ENSHBUG00000017200	slc3a2a (ENSHBUG00000000935)	snx15 (ENSHBUG00000017182)	prox3 (ENSHBUG00000017170)	tmem179ba (ENSHBUG00000017159)	si:ch211-285j22.3 (ENSHBUG00000017141)	brms1 (ENSHBUG00000017133)	ppp1r14bb (ENSHBUG00000017091)	plcb3 (ENSHBUG00000017029)	slc8a4b (ENSHBUG00000016783)
Lyretail cichlid	MODERN SPECIES	381	ostc (ENSNBRG00000008029)	etnppl (ENSNBRG00000007990)	ENSNBRG00000007978	larp7 (ENSNBRG00000007968)	ENSNBRG00000007951	ENSNBRG00000007938	ENSNBRG00000007902	ENSNBRG00000007863	plin2 (ENSNBRG00000007802)	DENND4C (ENSNBRG00000007705)	ENSNBRG00000007696	ENSNBRG00000007648	haus6 (ENSNBRG00000007598)	plaa (ENSNBRG00000007538)	zdhhc21 (ENSNBRG00000007509)	NFIB (ENSNBRG00000007455) ##22	ENSNBRG00000007379	PPP3CA (ENSNBRG00000007040)	DDIT4L (ENSNBRG00000006989)	ENSNBRG00000006960	ENSNBRG00000006890	pcxb (ENSNBRG00000006831)	slc3a2a (ENSNBRG00000006815)	snx15 (ENSNBRG00000006804)	prox3 (ENSNBRG00000006786)	tmem179ba (ENSNBRG00000006759)	brms1 (ENSNBRG00000006704)	ppp1r14bb (ENSNBRG00000006684)	plcb3 (ENSNBRG00000006591)	slc8a4b (ENSNBRG00000006527)	ENSNBRG00000006508
Nile tilapia	MODERN SPECIES	15	SLC24A2 (ENSONIG00000008752)	rpl34 (ENSONIG00000038178)	ENSONIG00000008774	ostc (ENSONIG00000037519)	etnppl (ENSONIG00000008754)	COL25A1 (ENSONIG00000008760)	larp7 (ENSONIG00000008763)	ENSONIG00000033929	ADAMTSL1 (ENSONIG00000008766)	plin2 (ENSONIG00000008770)	ENSONIG00000043093	DENND4C (ENSONIG00000013437)	ENSONIG00000013446	plaa (ENSONIG00000013448)	zdhhc21 (ENSONIG00000035752)	NFIB (ENSONIG00000013455) ##22	BANK1 (ENSONIG00000013461)	PPP3CA (ENSONIG00000013465)	DDIT4L (ENSONIG00000013475)	ENSONIG00000013476	ENSONIG00000013478	ENSONIG00000013495	pcxb (ENSONIG00000013481)	ENSONIG00000040255	slc3a2a (ENSONIG00000013499)	snx15 (ENSONIG00000013503)	prox3 (ENSONIG00000037877)	tmem179ba (ENSONIG00000013506)	brms1 (ENSONIG00000013509)	ppp1r14bb (ENSONIG00000013511)	plcb3 (ENSONIG00000013512)
Midas cichlid	MODERN SPECIES	1021	ENSACIG00000023801	rpl34 (ENSACIG00000023805)	ostc (ENSACIG00000023808)	etnppl (ENSACIG00000023844)	larp7 (ENSACIG00000023850)	ENSACIG00000023858	ENSACIG00000023860	ENSACIG00000023865	plin2 (ENSACIG00000023868)	ENSACIG00000023871	DENND4C (ENSACIG00000023877)	ENSACIG00000023889	ENSACIG00000023893	plaa (ENSACIG00000023901)	zdhhc21 (ENSACIG00000023902)	NFIB (ENSACIG00000023904) ##22	ENSACIG00000023907	ENSACIG00000023922	DDIT4L (ENSACIG00000023973)	ENSACIG00000023975	ENSACIG00000023977	pcxb (ENSACIG00000023981)	ENSACIG00000023987	ENSACIG00000023997	slc3a2a (ENSACIG00000024000)	snx15 (ENSACIG00000024004)	prox3 (ENSACIG00000024008)	tmem179ba (ENSACIG00000024010)	si:ch211-285j22.3 (ENSACIG00000024012)	brms1 (ENSACIG00000024013)	ppp1r14bb (ENSACIG00000024015)
Cod	MODERN SPECIES	8	ENSGMOG00000030124	ENSGMOG00000036132	ENSGMOG00000002468	ENSGMOG00000025485	ENSGMOG00000032578	ENSGMOG00000013971	ENSGMOG00000027414	ENSGMOG00000010553	ENSGMOG00000023858	ENSGMOG00000005179	ENSGMOG00000034370	ENSGMOG00000005133	ENSGMOG00000035301	ENSGMOG00000005229	ENSGMOG00000030595	ENSGMOG00000019827 ##22	ENSGMOG00000008048	ENSGMOG00000030044	ENSGMOG00000036351	ENSGMOG00000031728	ENSGMOG00000025235	ENSGMOG00000027744	ap1s1 (ENSGMOG00000010148)	serpine1 (ENSGMOG00000013886)	ENSGMOG00000022706	ENSGMOG00000036644	ENSGMOG00000029445	ENSGMOG00000030046	ENSGMOG00000026054	ENSGMOG00000031149	ENSGMOG00000034552
Elephant shark	MODERN SPECIES	1506	ENSCMIG00000016962	ENSCMIG00000016967	ENSCMIG00000016986	ENSCMIG00000017046	UBA6 (ENSCMIG00000017130)	gnrhr4 (ENSCMIG00000017381)	ENSCMIG00000017387	ENSCMIG00000017390	SNAPC3 (ENSCMIG00000017394)	ENSCMIG00000017404	TTC39B (ENSCMIG00000017416)	ENSCMIG00000017430	frem1a (ENSCMIG00000017433)	ENSCMIG00000017448	zdhhc21 (ENSCMIG00000017451)	NFIB (ENSCMIG00000017467) ##22	MPDZ (ENSCMIG00000017633)	ENSCMIG00000017872	PLGRKT (ENSCMIG00000017874)	ENSCMIG00000017875	jak2b (ENSCMIG00000017879)	DNAH6 (ENSCMIG00000017938)	ENSCMIG00000017986	chrnb3b (ENSCMIG00000017990)	chrna6 (ENSCMIG00000017992)	ENSCMIG00000017999	THUMPD2 (ENSCMIG00000018003)	ENSCMIG00000018007	ENSCMIG00000018009 #29	ENSCMIG00000018011	ENSCMIG00000018013
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Archosauria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Aves	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Anatidae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Duck	MODERN SPECIES	1831																ENSAPLG00000030171 ##22	ENSAPLG00000029230	ENSAPLG00000026491
Phasianidae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Turkey	MODERN SPECIES	23	FSD1 (ENSMGAG00000008264)	ENSMGAG00000019987	ENSMGAG00000001149	ENSMGAG00000001156	CELF5 (ENSMGAG00000001169)	NCLN (ENSMGAG00000001222) #20	S1PR4 (ENSMGAG00000020349)	ENSMGAG00000017983	ENSMGAG00000020928	GNA11 (ENSMGAG00000011971) #18	ENSMGAG00000018357 ##17	ENSMGAG00000020401 ##17	ENSMGAG00000010080	ENSMGAG00000007708	ENSMGAG00000009189	ENSMGAG00000022151 ##22	DOHH (ENSMGAG00000001468) #25	ENSMGAG00000001467	FZR1 (ENSMGAG00000001395) #26	TEKTIP1 (ENSMGAG00000018114) #27	ENSMGAG00000001386	MFSD12 (ENSMGAG00000001371) #28	HMG20B (ENSMGAG00000001362) #29	GIPC3 (ENSMGAG00000018477) #30	TBXA2R (ENSMGAG00000015732) #31	ENSMGAG00000001353 ##32	PIP5K1C (ENSMGAG00000001308)	TJP3 (ENSMGAG00000000963)	APBA3 (ENSMGAG00000000958)	ENSMGAG00000000932	ENSMGAG00000000927
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Episquamata	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Toxicofera	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Elapidae	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00950000182916.a.b.b ##22
Blue-lipped sea krait	MODERN SPECIES	2144																ENSLLTG00000007969 ##22