Artiodactyla_b	ANCESTRAL SPECIES	25	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b #12	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403	ENSGT00500000044957 #24	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282 #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT00730000111899 #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000162148 #7	ENSGT00940000160775 #8	ENSGT00940000163572 #9	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b.a #12	ENSGT00940000162830.a.b.b ##11	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #24	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282 #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT00730000111899 #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34	ENSGT00940000160384 #35	ENSGT00390000001201 #36	ENSGT00950000183005.b.d #37
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000162148 #7	ENSGT00940000160775 #8	ENSGT00940000163572 #9	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b.a #12	ENSGT00940000162830.a.b.b ##11	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #24	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282 #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT00730000111899 #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34	ENSGT00940000160384 #35	ENSGT00390000001201 #36	ENSGT00950000183005.b.d #37
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000162148 #7	ENSGT00940000160775 #8	ENSGT00940000163572 #9	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b.a #12	ENSGT00940000162830.a.b.b ##11	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a.m #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #24	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282.d #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT00730000111899 #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34	ENSGT00940000160384 #35	ENSGT00390000001201 #36	ENSGT00950000183005.b.d #37
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000162148 #7	ENSGT00940000160775 #8	ENSGT00940000163572 #9	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b.a #12	ENSGT00940000162830.a.b.b ##11	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a.m #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #24	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282.d #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT00730000111899 #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34	ENSGT00940000160384 #35	ENSGT00390000001201 #36	ENSGT00950000183005.b.d #37
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00940000162148 #7	ENSGT00940000160775 #8	ENSGT00940000163572 #9	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b.a #12	ENSGT00940000162830.a.b.b ##11	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a.m #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #24	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282.d #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT00730000111899 #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34	ENSGT00940000160384 #35	ENSGT00390000001201 #36	ENSGT00950000183005.b.d #37
Narwhal	MODERN SPECIES	298	ZFR2 (ENSMMNG00015002202) #7	MATK (ENSMMNG00015002087) #8	RAX2 (ENSMMNG00015002052) #9	ZNF555 (ENSMMNG00015002028) #10	ENSMMNG00015002004 #11	ENSMMNG00015001988 #12	ENSMMNG00015001966 #13	ENSMMNG00015001925 #14	TLE2 (ENSMMNG00015001829) #15	TLE5 (ENSMMNG00015001757) #16	GNA11 (ENSMMNG00015001728) #17	GNA15 (ENSMMNG00015001704) #18	S1PR4 (ENSMMNG00015001684) #19	NCLN (ENSMMNG00015001627) #20	CELF5 (ENSMMNG00015001491) #21	NFIC (ENSMMNG00015001309) #22	SMIM24 (ENSMMNG00015001179) #23	DOHH (ENSMMNG00015001138) #24	FZR1 (ENSMMNG00015001082) #25	TEKTIP1 (ENSMMNG00015001041) #26	MFSD12 (ENSMMNG00015000990) #27	HMG20B (ENSMMNG00015000925) #28	GIPC3 (ENSMMNG00015000888) #29	ENSMMNG00015000865 #30	TBXA2R (ENSMMNG00015000841) #31	CACTIN (ENSMMNG00015000805) #32	PIP5K1C (ENSMMNG00015000718) #33	TJP3 (ENSMMNG00015000585) #34	APBA3 (ENSMMNG00015000514) #35	MRPL54 (ENSMMNG00015000490) #36	MBD3 (ENSMMNG00015000454) #37
Beluga whale	MODERN SPECIES	62	RAX2 (ENSDLEG00000020322) #9	ZNF555 (ENSDLEG00000020325) #10	ENSDLEG00000020329 ##11	ENSDLEG00000020333 #11	ENSDLEG00000020335 ##11	ENSDLEG00000020339 #14	ENSDLEG00000020344 #15	ENSDLEG00000020351 ##14	AES (ENSDLEG00000020354) #16	GNA11 (ENSDLEG00000020358) #17	GNA15 (ENSDLEG00000020362) #18	S1PR4 (ENSDLEG00000020368) #19	NCLN (ENSDLEG00000020375) #20	ENSDLEG00000020390	ENSDLEG00000020396 #21	NFIC (ENSDLEG00000020401) #22	ENSDLEG00000020426 #23	DOHH (ENSDLEG00000020431) #24	FZR1 (ENSDLEG00000020434) #25	ENSDLEG00000015356 #26	MFSD12 (ENSDLEG00000015360) #27	HMG20B (ENSDLEG00000015376) #28	GIPC3 (ENSDLEG00000015384) #29	TBXA2R (ENSDLEG00000015397) #31	CACTIN (ENSDLEG00000015406) #32	PIP5K1C (ENSDLEG00000015428) #33	TJP3 (ENSDLEG00000015460) #34	APBA3 (ENSDLEG00000015494) #35	MRPL54 (ENSDLEG00000015510) #36	MBD3 (ENSDLEG00000015523) #37	ENSDLEG00000015534
Vaquita	MODERN SPECIES	14	RAX2 (ENSPSNG00000011818) #9	ZNF555 (ENSPSNG00000011767) #10	ENSPSNG00000011752 #11	ENSPSNG00000011739 #12	ENSPSNG00000011716 ##11	ENSPSNG00000011693	TLE6 (ENSPSNG00000011672) #14	TLE2 (ENSPSNG00000011350) #15	TLE5 (ENSPSNG00000011246) #16	GNA11 (ENSPSNG00000011201) #17	GNA15 (ENSPSNG00000011159) #18	S1PR4 (ENSPSNG00000011138) #19	NCLN (ENSPSNG00000011058) #20	CELF5 (ENSPSNG00000010809) #21	SMIM24 (ENSPSNG00000010742) #23	NFIC (ENSPSNG00000010514) #22	DOHH (ENSPSNG00000010352) #24	FZR1 (ENSPSNG00000010251) #25	TEKTIP1 (ENSPSNG00000010156) #26	MFSD12 (ENSPSNG00000009980) #27	HMG20B (ENSPSNG00000009908) #28	GIPC3 (ENSPSNG00000009792) #29	ENSPSNG00000009640 #30	TBXA2R (ENSPSNG00000019240) #31	CACTIN (ENSPSNG00000019192) #32	PIP5K1C (ENSPSNG00000019044) #33	TJP3 (ENSPSNG00000018690) #34	APBA3 (ENSPSNG00000018571) #35	MRPL54 (ENSPSNG00000018508) #36	MBD3 (ENSPSNG00000018406) #37	TCF3 (ENSPSNG00000018208)
Dolphin	MODERN SPECIES	1354															CELF5 (ENSTTRG00000009625) #21	NFIC (ENSTTRG00000009660) #22	SMIM44 (ENSTTRG00000009690)	DOHH (ENSTTRG00000009703) #24
Sperm whale	MODERN SPECIES	11	SIRT6 (ENSPCTG00005016278)	CREB3L3 (ENSPCTG00005016528)	PIAS4 (ENSPCTG00005016559)	EEF2 (ENSPCTG00005016617)	DAPK3 (ENSPCTG00005016679)	NMRK2 (ENSPCTG00005016732)	ATCAY (ENSPCTG00005016906)	ENSPCTG00005016973 #7	ENSPCTG00005017007 #7	MATK (ENSPCTG00005017055) #8	RAX2 (ENSPCTG00005017465) #9	ENSPCTG00005017499	ZNF555 (ENSPCTG00005017508) #10	ENSPCTG00005017562 #12	ENSPCTG00005017573 ##11	NFIC (ENSPCTG00005017610) #22	SMIM24 (ENSPCTG00005017813) #23	DOHH (ENSPCTG00005017916) #24	ENSPCTG00005017955	TLE5 (ENSPCTG00005018020) #16	TLE2 (ENSPCTG00005018210) #15	PIP5K1C (ENSPCTG00005019009) #33	ENSPCTG00005019154	ENSPCTG00005019177	APBA3 (ENSPCTG00005019206) #35	MRPL54 (ENSPCTG00005019236) #36	MBD3 (ENSPCTG00005019289) #37	ENSPCTG00005019396	TCF3 (ENSPCTG00005019427)	ONECUT3 (ENSPCTG00005019483)	KLF16 (ENSPCTG00005019503)
Blue whale	MODERN SPECIES	14	ZFR2 (ENSBMSG00010006830) #7	ZNF555 (ENSBMSG00010007047) #10	ENSBMSG00010007074 #11	ENSBMSG00010007090	ENSBMSG00010007121 #12	ENSBMSG00010007140 ##11	ENSBMSG00010007156	ENSBMSG00010007176 #14	TLE2 (ENSBMSG00010007244) #15	TLE5 (ENSBMSG00010007577) #16	GNA11 (ENSBMSG00010007614) #17	GNA15 (ENSBMSG00010007638) #18	S1PR4 (ENSBMSG00010007650) #19	NCLN (ENSBMSG00010007666) #20	CELF5 (ENSBMSG00010007695) #21	NFIC (ENSBMSG00010007764) #22	ENSBMSG00010007983 #23	DOHH (ENSBMSG00010008048) #24	FZR1 (ENSBMSG00010008072) #25	MFSD12 (ENSBMSG00010008150) #27	HMG20B (ENSBMSG00010008175) #28	GIPC3 (ENSBMSG00010008191) #29	TBXA2R (ENSBMSG00010008203) #31	CACTIN (ENSBMSG00010008209) #32	PIP5K1C (ENSBMSG00010008234) #33	TJP3 (ENSBMSG00010008320) #34	APBA3 (ENSBMSG00010008350) #35	MRPL54 (ENSBMSG00010008367) #36	MBD3 (ENSBMSG00010008380) #37	TCF3 (ENSBMSG00010008426)	ONECUT3 (ENSBMSG00010008489)
Pecora	ANCESTRAL SPECIES		ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b #12	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403	ENSGT00500000044957 #24	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282 #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT00730000111899 #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34
Yarkand deer	MODERN SPECIES	32	DIRAS1 (ENSCHYG00000004359)	SLC39A3 (ENSCHYG00000004339)	SGTA (ENSCHYG00000004319)	THOP1 (ENSCHYG00000004286)	ZNF554 (ENSCHYG00000004250)	ZNF555 (ENSCHYG00000004235) #10	ENSCHYG00000004218 #12	TLE6 (ENSCHYG00000004189) #14	ENSCHYG00000004147 #15	ENSCHYG00000004111 ##14	GNA11 (ENSCHYG00000004093) #17	GNA15 (ENSCHYG00000004083) #18	S1PR4 (ENSCHYG00000004078) #19	NCLN (ENSCHYG00000004043) #20	CELF5 (ENSCHYG00000004001) #21	NFIC (ENSCHYG00000003885) #22	SMIM24 (ENSCHYG00000003795) #23	ENSCHYG00000003765 #24	FZR1 (ENSCHYG00000003667) #25	ENSCHYG00000003615 #26	MFSD12 (ENSCHYG00000003571) #27	HMG20B (ENSCHYG00000003538) #28	GIPC3 (ENSCHYG00000003521) #29	TBXA2R (ENSCHYG00000003508) #31	CACTIN (ENSCHYG00000003483) #32	PIP5K1C (ENSCHYG00000003264) #33	TJP3 (ENSCHYG00000003169) #34	APBA3 (ENSCHYG00000003126) #35	RAX2 (ENSCHYG00000003107) #9	MATK (ENSCHYG00000003016) #8	MRPL54 (ENSCHYG00000002977) #36
Percora_a	ANCESTRAL SPECIES		ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b #12	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403	ENSGT00500000044957 #24	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282 #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT00730000111899 #30	ENSGT01030000234559.a.a.a #31	ENSGT00520000060565	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34
Siberian musk deer	MODERN SPECIES	99	SLC39A3 (ENSMMSG00000001047)	SGTA (ENSMMSG00000001020)	THOP1 (ENSMMSG00000000968)	ZNF554 (ENSMMSG00000000944)	ZNF555 (ENSMMSG00000000926) #10	ENSMMSG00000000907 #11	ENSMMSG00000000894 #12	ENSMMSG00000000868 #14	TLE2 (ENSMMSG00000000627) #15	TLE5 (ENSMMSG00000000569) #16	GNA11 (ENSMMSG00000000551) #17	GNA15 (ENSMMSG00000000532) #18	S1PR4 (ENSMMSG00000000524) #19	NCLN (ENSMMSG00000000514) #20	CELF5 (ENSMMSG00000000449) #21	NFIC (ENSMMSG00000000253) #22	ENSMMSG00000000182	SMIM44 (ENSMMSG00000000172)	ENSMMSG00000000156	DOHH (ENSMMSG00000000141) #24	FZR1 (ENSMMSG00000000085) #25	TEKTIP1 (ENSMMSG00000000060) #26	MFSD12 (ENSMMSG00000000043) #27	HMG20B (ENSMMSG00000000025) #28	GIPC3 (ENSMMSG00000023147) #29	TBXA2R (ENSMMSG00000023142) #31	ENSMMSG00000023139	CACTIN (ENSMMSG00000023129) #32	PIP5K1C (ENSMMSG00000023101) #33	TJP3 (ENSMMSG00000023025) #34	APBA3 (ENSMMSG00000023004) #35
Bovidae	ANCESTRAL SPECIES		ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b #12	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403	ENSGT00500000044957 #24	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282 #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT00730000111899 #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34	ENSGT00940000160384 #35
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b #12	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #24	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282 #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34	ENSGT00940000160384 #35	ENSGT00390000001201 #36	ENSGT00940000163572 #9	ENSGT00940000160775 #8
Goat	MODERN SPECIES	26	SLC39A3 (ENSCHIG00000019215)	SGTA (ENSCHIG00000025763)	THOP1 (ENSCHIG00000013949)	ZNF554 (ENSCHIG00000021466)	ZNF555 (ENSCHIG00000013462) #10	ENSCHIG00000013771 #11	ENSCHIG00000011999 #12	TLE6 (ENSCHIG00000018660) #14	TLE2 (ENSCHIG00000026991) #15	TLE5 (ENSCHIG00000012967) #16	GNA11 (ENSCHIG00000012068) #17	GNA15 (ENSCHIG00000006621) #18	S1PR4 (ENSCHIG00000012284) #19	NCLN (ENSCHIG00000021992) #20	CELF5 (ENSCHIG00000004008) #21	NFIC (ENSCHIG00000015364) #22	SMIM24 (ENSCHIG00000016053) #23	DOHH (ENSCHIG00000023284) #24	FZR1 (ENSCHIG00000014824) #25	MFSD12 (ENSCHIG00000024505) #27	TEKTIP1 (ENSCHIG00000012701) #26	HMG20B (ENSCHIG00000023604) #28	GIPC3 (ENSCHIG00000018804) #29	TBXA2R (ENSCHIG00000012747) #31	CACTIN (ENSCHIG00000026750) #32	PIP5K1C (ENSCHIG00000022491) #33	TJP3 (ENSCHIG00000017841) #34	APBA3 (ENSCHIG00000014574) #35	MRPL54 (ENSCHIG00000026538) #36	RAX2 (ENSCHIG00000020868) #9	MATK (ENSCHIG00000014576) #8
Rambouillet Sheep	MODERN SPECIES	21	DIRAS1 (ENSOARG00020021668)	SLC39A3 (ENSOARG00020021617)	SGTA (ENSOARG00020021585)	THOP1 (ENSOARG00020021465)	ZNF554 (ENSOARG00020021423)	ZNF555 (ENSOARG00020021394) #10	ENSOARG00020021357	ENSOARG00020021289 #14	TLE2 (ENSOARG00020020198) #15	TLE5 (ENSOARG00020020135) #16	GNA11 (ENSOARG00020020092) #17	GNA15 (ENSOARG00020020045) #18	S1PR4 (ENSOARG00020020029) #19	NCLN (ENSOARG00020019971) #20	CELF5 (ENSOARG00020019796) #21	NFIC (ENSOARG00020019406) #22	SMIM24 (ENSOARG00020019336) #23	DOHH (ENSOARG00020019251) #24	FZR1 (ENSOARG00020019125) #25	TEKTIP1 (ENSOARG00020019053) #26	MFSD12 (ENSOARG00020018933) #27	HMG20B (ENSOARG00020018879) #28	GIPC3 (ENSOARG00020018810) #29	TBXA2R (ENSOARG00020018783) #31	CACTIN (ENSOARG00020018654) #32	PIP5K1C (ENSOARG00020017829) #33	TJP3 (ENSOARG00020017288) #34	APBA3 (ENSOARG00020017206) #35	MRPL54 (ENSOARG00020017174) #36	RAX2 (ENSOARG00020017140) #9	MATK (ENSOARG00020017085) #8
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b #12	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00390000003403	ENSGT00500000044957 #24	ENSGT00960000187413	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282 #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT00730000111899 #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34
American bison	MODERN SPECIES	3349	GNG7 (ENSBBBG00000023928)	DIRAS1 (ENSBBBG00000023894)	SLC39A3 (ENSBBBG00000000305)	SGTA (ENSBBBG00000023876)	THOP1 (ENSBBBG00000023819)	ZNF554 (ENSBBBG00000023794)	ZNF555 (ENSBBBG00000023789) #10	ENSBBBG00000023769 #14	TLE2 (ENSBBBG00000023745) #15	TLE5 (ENSBBBG00000023655) #16	GNA11 (ENSBBBG00000006176) #17	GNA15 (ENSBBBG00000006167) #18	S1PR4 (ENSBBBG00000023601) #19	NCLN (ENSBBBG00000023582) #20	ENSBBBG00000008686	NFIC (ENSBBBG00000023432) #22	SMIM24 (ENSBBBG00000023341) #23	SMIM44 (ENSBBBG00000023332)	DOHH (ENSBBBG00000008411) #24	ENSBBBG00000023317	FZR1 (ENSBBBG00000023304) #25	TEKTIP1 (ENSBBBG00000023231) #26	MFSD12 (ENSBBBG00000023220) #27	HMG20B (ENSBBBG00000023190) #28	GIPC3 (ENSBBBG00000000334) #29	TBXA2R (ENSBBBG00000000372) #31	CACTIN (ENSBBBG00000000388) #32	PIP5K1C (ENSBBBG00000000451) #33	TJP3 (ENSBBBG00000023169) #34	APBA3 (ENSBBBG00000006868) #35	MRPL54 (ENSBBBG00000023057) #36
Bos	ANCESTRAL SPECIES	3	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b #12	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00500000044957 #24	ENSGT00960000187413	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282 #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT00730000111899 #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34	ENSGT00940000160384 #35
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b #12	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000182916.a.a #22	ENSGT00940000154660.a #23	ENSGT00500000044957 #24	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282 #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34	ENSGT00940000160384 #35	ENSGT00390000001201 #36	ENSGT00940000163572 #9	ENSGT00940000160775 #8
Wild yak	MODERN SPECIES	144	SLC39A3 (ENSBMUG00000013351)	SGTA (ENSBMUG00000013321)	THOP1 (ENSBMUG00000013288)	ZNF554 (ENSBMUG00000013275)	ZNF555 (ENSBMUG00000013266) #10	ENSBMUG00000013233 #12	ENSBMUG00000013196 #14	TLE2 (ENSBMUG00000013141) #15	TLE5 (ENSBMUG00000012985) #16	GNA11 (ENSBMUG00000012972) #17	GNA15 (ENSBMUG00000012918) #18	S1PR4 (ENSBMUG00000012890) #19	NCLN (ENSBMUG00000012866) #20	CELF5 (ENSBMUG00000012845) #21	ENSBMUG00000012820	NFIC (ENSBMUG00000012806) #22	ENSBMUG00000012785 #23	DOHH (ENSBMUG00000012771) #24	FZR1 (ENSBMUG00000012724) #25	TEKTIP1 (ENSBMUG00000012671) #26	MFSD12 (ENSBMUG00000012651) #27
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	27	SGTA (ENSBGRG00000001178)	ENSBGRG00000001155	THOP1 (ENSBGRG00000001102)	ZNF554 (ENSBGRG00000001093)	ZNF555 (ENSBGRG00000001084) #10	ENSBGRG00000001060 #11	ENSBGRG00000001055 #12	TLE6 (ENSBGRG00000001034) #14	TLE2 (ENSBGRG00000000857) #15	TLE5 (ENSBGRG00000000793) #16	GNA11 (ENSBGRG00000000769) #17	GNA15 (ENSBGRG00000000748) #18	S1PR4 (ENSBGRG00000000735) #19	NCLN (ENSBGRG00000000641) #20	CELF5 (ENSBGRG00000000565) #21	ENSBGRG00000000535 #22	ENSBGRG00000000421 #22	ENSBGRG00000000370 #23	DOHH (ENSBGRG00000021664) #24	FZR1 (ENSBGRG00000021298) #25	TEKTIP1 (ENSBGRG00000021216) #26	MFSD12 (ENSBGRG00000021107) #27	HMG20B (ENSBGRG00000021064) #28	GIPC3 (ENSBGRG00000021004) #29	TBXA2R (ENSBGRG00000020972) #31	CACTIN (ENSBGRG00000020942) #32	PIP5K1C (ENSBGRG00000020521) #33	TJP3 (ENSBGRG00000019950) #34	APBA3 (ENSBGRG00000019857) #35	MRPL54 (ENSBGRG00000019811) #36	RAX2 (ENSBGRG00000019785) #9
Domestic yak	MODERN SPECIES	27	ENSBGRG00000001155	THOP1 (ENSBGRG00000001102)	ZNF554 (ENSBGRG00000001093)	ZNF555 (ENSBGRG00000001084) #10	ENSBGRG00000001060 #11	ENSBGRG00000001055 #12	TLE6 (ENSBGRG00000001034) #14	TLE2 (ENSBGRG00000000857) #15	TLE5 (ENSBGRG00000000793) #16	GNA11 (ENSBGRG00000000769) #17	GNA15 (ENSBGRG00000000748) #18	S1PR4 (ENSBGRG00000000735) #19	NCLN (ENSBGRG00000000641) #20	CELF5 (ENSBGRG00000000565) #21	ENSBGRG00000000535 #22	ENSBGRG00000000421 #22	ENSBGRG00000000370 #23	DOHH (ENSBGRG00000021664) #24	FZR1 (ENSBGRG00000021298) #25	TEKTIP1 (ENSBGRG00000021216) #26	MFSD12 (ENSBGRG00000021107) #27	HMG20B (ENSBGRG00000021064) #28	GIPC3 (ENSBGRG00000021004) #29	TBXA2R (ENSBGRG00000020972) #31	CACTIN (ENSBGRG00000020942) #32	PIP5K1C (ENSBGRG00000020521) #33	TJP3 (ENSBGRG00000019950) #34	APBA3 (ENSBGRG00000019857) #35	MRPL54 (ENSBGRG00000019811) #36	RAX2 (ENSBGRG00000019785) #9	MATK (ENSBGRG00000019523) #8
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT00940000163560	ENSGT00940000163425 #10	ENSGT00940000162830.a.a.a #11	ENSGT00940000162830.a.b #12	ENSGT01030000234519.e.a.a.b.a.a.a #14	ENSGT01030000234519.e.a.a.b.a.a.b.a.a #15	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.a #16	ENSGT00940000161033 #17	ENSGT00940000161736 #18	ENSGT01050000244887.B #19	ENSGT00500000044945.a #20	ENSGT00940000154201.a.a.b.d #21	ENSGT00950000185200	ENSGT00950000182916.a.a #22	ENSGT00950000185935	ENSGT00940000154660.a #23	ENSGT00500000044957 #24	ENSGT00960000187413	ENSGT00950000183104.B.a.a #25	ENSGT00390000004282 #26	ENSGT00390000005318.a #27	ENSGT00940000161213 #28	ENSGT00390000003420.b #29	ENSGT00730000111899 #30	ENSGT01030000234559.a.a.a #31	ENSGT00950000183102.A.a #32	ENSGT00940000159258 #33	ENSGT00940000160036 #34	ENSGT00940000160384 #35
Hybrid Bos Indicus	MODERN SPECIES	26	SLC39A3 (ENSBIXG00005016121)	ENSBIXG00005002558	SGTA (ENSBIXG00005016070)	THOP1 (ENSBIXG00005016046)	ZNF554 (ENSBIXG00005002533)	ZNF555 (ENSBIXG00005015972) #10	ENSBIXG00005015965 #11	ENSBIXG00005015961 #12	TLE6 (ENSBIXG00005002519) #14	TLE2 (ENSBIXG00005015910) #15	TLE5 (ENSBIXG00005015803) #16	GNA11 (ENSBIXG00005002462) #17	GNA15 (ENSBIXG00005002453) #18	S1PR4 (ENSBIXG00005015709) #19	NCLN (ENSBIXG00005002433) #20	NFIC (ENSBIXG00005002308) #22	ENSBIXG00005015296	SMIM24 (ENSBIXG00005015291) #23	DOHH (ENSBIXG00005015281) #24	ENSBIXG00005015258	FZR1 (ENSBIXG00005006231) #25	TEKTIP1 (ENSBIXG00005015154) #26	MFSD12 (ENSBIXG00005015129) #27	HMG20B (ENSBIXG00005015091) #28	GIPC3 (ENSBIXG00005002213) #29	TBXA2R (ENSBIXG00005015046) #31	CACTIN (ENSBIXG00005002202) #32	PIP5K1C (ENSBIXG00005014985) #33	TJP3 (ENSBIXG00005002143) #34	APBA3 (ENSBIXG00005005496) #35	MRPL54 (ENSBIXG00005014674) #36
Cow	MODERN SPECIES	26	THOP1 (ENSBTAG00000020446)	ZNF554 (ENSBTAG00000031352)	ZNF555 (ENSBTAG00000008397) #10	ENSBTAG00000012868 #12	TLE6 (ENSBTAG00000001152) #14	TLE2 (ENSBTAG00000001153) #15	TLE5 (ENSBTAG00000031363) #16	GNA11 (ENSBTAG00000012181) #17	GNA15 (ENSBTAG00000019988) #18	S1PR4 (ENSBTAG00000000381) #19	NCLN (ENSBTAG00000020759) #20	CELF5 (ENSBTAG00000021774) #21	ENSBTAG00000054212	ENSBTAG00000051439 #21	ENSBTAG00000049701	NFIC (ENSBTAG00000008520) #22	ENSBTAG00000054259	SMIM24 (ENSBTAG00000031383) #23	DOHH (ENSBTAG00000005272) #24	ENSBTAG00000051400	FZR1 (ENSBTAG00000031387) #25	TEKTIP1 (ENSBTAG00000014982) #26	MFSD12 (ENSBTAG00000014979) #27	HMG20B (ENSBTAG00000008789) #28	GIPC3 (ENSBTAG00000050809) #29	ENSBTAG00000053812 #30	TBXA2R (ENSBTAG00000014944) #31	CACTIN (ENSBTAG00000010373) #32	PIP5K1C (ENSBTAG00000000710) #33	TJP3 (ENSBTAG00000018342) #34	APBA3 (ENSBTAG00000008395) #35