Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000000954 #7	ENSGT01010000222313.A.b.a.d #8	ENSGT00390000002579 #9	ENSGT00940000154539.b #10	ENSGT00940000160336 #11	ENSGT01050000248481	ENSGT00390000012668 #13	ENSGT00950000182955.a.a.a #14	ENSGT00950000183110.b.b #15	ENSGT00940000155624.b #16	ENSGT00510000047658 #17	ENSGT00510000048142 #18	ENSGT00940000154130.a.a.b #19	ENSGT00950000183047.c.b #20	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570	ENSGT00940000156337 #23	ENSGT00950000183027.b #24	ENSGT00950000183054.a.a.a #25	ENSGT00950000182924.A.b.a.b #26	ENSGT00550000075003 #27	ENSGT00940000158131 #28	ENSGT00940000160665 #29	ENSGT00510000046470.a.a.a.d.b #30	ENSGT00940000163685.k.b.a #31	ENSGT00940000167903 #32	ENSGT00940000157168 #33	ENSGT00940000156545 #34	ENSGT00940000159954 #35	ENSGT00940000159769.b #36
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0025582 #7	Tlcd4 (MGP_CAROLIEiJ_G0025583) #8	Alg14 (MGP_CAROLIEiJ_G0025584) #9	Cnn3 (MGP_CAROLIEiJ_G0025585) #10	Slc44a3 (MGP_CAROLIEiJ_G0025586) #11	MGP_CAROLIEiJ_G0025587 #12	F3 (MGP_CAROLIEiJ_G0025588) #13	Abcd3 (MGP_CAROLIEiJ_G0025589) #14	Arhgap29 (MGP_CAROLIEiJ_G0025590) #15	MGP_CAROLIEiJ_G0025591 #16	Gclm (MGP_CAROLIEiJ_G0025592) #17	Dnttip2 (MGP_CAROLIEiJ_G0025593) #18	Bcar3 (MGP_CAROLIEiJ_G0025594) #19	Fnbp1l (MGP_CAROLIEiJ_G0025595) #20	Pde5a (MGP_CAROLIEiJ_G0025596) #21	Fabp2 (MGP_CAROLIEiJ_G0025597) #22	Usp53 (MGP_CAROLIEiJ_G0025598) #23	Myoz2 (MGP_CAROLIEiJ_G0025599) #24	Synpo2 (MGP_CAROLIEiJ_G0025600) #25	Sec24d (MGP_CAROLIEiJ_G0025601) #26	Mettl14 (MGP_CAROLIEiJ_G0025602) #27	Prss12 (MGP_CAROLIEiJ_G0025603) #28	Ndst3 (MGP_CAROLIEiJ_G0025604) #29	Tram1l1 (MGP_CAROLIEiJ_G0025605) #30	1700006A11Rik (MGP_CAROLIEiJ_G0025606) #31	MGP_CAROLIEiJ_G0025607 #32	Ndst4 (MGP_CAROLIEiJ_G0025608) #33	Ugt8a (MGP_CAROLIEiJ_G0025609) #34	Arsj (MGP_CAROLIEiJ_G0025610) #35	Camk2d (MGP_CAROLIEiJ_G0025611) #36	MGP_CAROLIEiJ_G0025612 #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000000954 #7	ENSGT01010000222313.A.b.a.d #8	ENSGT00390000002579 #9	ENSGT00940000154539.b #10	ENSGT00940000160336 #11	ENSGT01050000248481	ENSGT00390000012668 #13	ENSGT00950000182955.a.a.a #14	ENSGT00950000183110.b.b #15	ENSGT00940000155624.b #16	ENSGT00510000047658 #17	ENSGT00510000048142 #18	ENSGT00940000154130.a.a.b #19	ENSGT00950000183047.c.b #20	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570	ENSGT00940000156337 #23	ENSGT00950000183027.b #24	ENSGT00950000183054.a.a.a #25	ENSGT00950000182924.A.b.a.b #26	ENSGT00550000075003 #27	ENSGT00940000158131 #28	ENSGT00940000160665 #29	ENSGT00510000046470.a.a.a.d.b #30	ENSGT00940000163685.k.b.a #31	ENSGT00940000167903 #32	ENSGT00940000157168 #33	ENSGT00940000156545 #34	ENSGT00940000159954 #35	ENSGT00940000159769.b #36
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000000954 #7	ENSGT01010000222313.A.b.a.d #8	ENSGT00390000002579 #9	ENSGT00940000154539.b #10	ENSGT00940000160336 #11	ENSGT01050000248481	ENSGT00390000012668 #13	ENSGT00950000182955.a.a.a #14	ENSGT00950000183110.b.b #15	ENSGT00940000155624.b #16	ENSGT00510000047658 #17	ENSGT00510000048142 #18	ENSGT00940000154130.a.a.b #19	ENSGT00950000183047.c.b #20	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570	ENSGT00940000156337 #23	ENSGT00950000183027.b #24	ENSGT00950000183054.a.a.a #25	ENSGT00950000182924.A.b.a.b #26	ENSGT00550000075003 #27	ENSGT00940000158131 #28	ENSGT00940000160665 #29	ENSGT00510000046470.a.a.a.d.b #30	ENSGT00940000163685.k.b.a #31	ENSGT00940000167903 #32	ENSGT00940000157168 #33	ENSGT00940000156545 #34	ENSGT00940000159954 #35	ENSGT00940000159769.b #36
Steppe mouse	MODERN SPECIES	3290													Bcar3 (ENSMSIG00000014946) #19	Fnbp1l (ENSMSIG00000014989) #20	Pde5a (ENSMSIG00000015248) #21	Fabp2 (ENSMSIG00000016508) #22	1810037I17Rik (ENSMSIG00000016527)	Usp53 (ENSMSIG00000016537) #23	Myoz2 (ENSMSIG00000016617) #24	Synpo2 (ENSMSIG00000016629) #25	Sec24d (ENSMSIG00000016666) #26	Mettl14 (ENSMSIG00000016719) #27	Prss12 (ENSMSIG00000016761) #28	Ndst3 (ENSMSIG00000016807) #29	Tram1l1 (ENSMSIG00000016869) #30	1700006A11Rik (ENSMSIG00000016876) #31	1700003H04Rik (ENSMSIG00000016921) #32	Ndst4 (ENSMSIG00000016973) #33	ENSMSIG00000017033	Ugt8a (ENSMSIG00000017043) #34
spretus	MODERN SPECIES	12	Ptbp2 (MGP_SPRETEiJ_G0026532)	MGP_SPRETEiJ_G0026533 #7	Tlcd4 (MGP_SPRETEiJ_G0026534) #8	Alg14 (MGP_SPRETEiJ_G0026535) #9	Cnn3 (MGP_SPRETEiJ_G0026536) #10	Slc44a3 (MGP_SPRETEiJ_G0026537) #11	MGP_SPRETEiJ_G0026538	MGP_SPRETEiJ_G0026539	Abcd3 (MGP_SPRETEiJ_G0026540) #14	Arhgap29 (MGP_SPRETEiJ_G0026541) #15	Abca4 (MGP_SPRETEiJ_G0026542) #16	Gclm (MGP_SPRETEiJ_G0026543) #17	Dnttip2 (MGP_SPRETEiJ_G0026544) #18	Fnbp1l (MGP_SPRETEiJ_G0026546) #20	Pde5a (MGP_SPRETEiJ_G0026547) #21	Fabp2 (MGP_SPRETEiJ_G0026548) #22	MGP_SPRETEiJ_G0026549	1810037I17Rik (MGP_SPRETEiJ_G0026550)	Usp53 (MGP_SPRETEiJ_G0026551) #23	Myoz2 (MGP_SPRETEiJ_G0026552) #24	Synpo2 (MGP_SPRETEiJ_G0026553) #25	Sec24d (MGP_SPRETEiJ_G0026554) #26	Mettl14 (MGP_SPRETEiJ_G0026555) #27	Prss12 (MGP_SPRETEiJ_G0026556) #28	Ndst3 (MGP_SPRETEiJ_G0026557) #29	Tram1l1 (MGP_SPRETEiJ_G0026558) #30	MGP_SPRETEiJ_G0026559	MGP_SPRETEiJ_G0026560 #32	Ndst4 (MGP_SPRETEiJ_G0026561) #33	Ugt8a (MGP_SPRETEiJ_G0026562) #34	Arsj (MGP_SPRETEiJ_G0026563) #35
Mouse	MODERN SPECIES	12	Ptbp2 (ENSMUSG00000028134)	Rwdd3 (ENSMUSG00000028133) #7	Tlcd4 (ENSMUSG00000028132) #8	Alg14 (ENSMUSG00000039887) #9	Cnn3 (ENSMUSG00000053931) #10	Slc44a3 (ENSMUSG00000039865) #11	F3 (ENSMUSG00000028128) #13	Abcd3 (ENSMUSG00000028127) #14	Arhgap29 (ENSMUSG00000039831) #15	Abca4 (ENSMUSG00000028125) #16	Gclm (ENSMUSG00000028124) #17	Dnttip2 (ENSMUSG00000039756) #18	Bcar3 (ENSMUSG00000028121) #19	Fnbp1l (ENSMUSG00000039735) #20	Pde5a (ENSMUSG00000053965) #21	Fabp2 (ENSMUSG00000023057) #22	1810037I17Rik (ENSMUSG00000054091)	Usp53 (ENSMUSG00000039701) #23	Myoz2 (ENSMUSG00000028116) #24	Synpo2 (ENSMUSG00000050315) #25	Sec24d (ENSMUSG00000039234) #26	Mettl14 (ENSMUSG00000028114) #27	Prss12 (ENSMUSG00000027978) #28	Ndst3 (ENSMUSG00000027977) #29	Tram1l1 (ENSMUSG00000044528) #30	1700006A11Rik (ENSMUSG00000027973) #31	1700003H04Rik (ENSMUSG00000039174) #32	Ndst4 (ENSMUSG00000027971) #33	Ugt8a (ENSMUSG00000032854) #34	Arsj (ENSMUSG00000046561) #35	Camk2d (ENSMUSG00000053819) #36