Hystricomorpha	ANCESTRAL SPECIES	38	ENSGT00390000003555	ENSGT00940000156842 #7	ENSGT00640000091487 #8	ENSGT01060000248588.a.c.b #9	ENSGT00390000012346 #10	ENSGT00940000155372 #11	ENSGT00950000183130.A #12	ENSGT01010000222815	ENSGT00940000155988 #13	ENSGT01070000253744.a.b #15	ENSGT00510000046908.a.a.b #16	ENSGT00390000007586.a.b #17	ENSGT00940000158340 #18	ENSGT00940000153395.a #20	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570 #23	ENSGT00940000156337 #24	ENSGT00950000183027.b #25	ENSGT00950000183054.a.a.a #26	ENSGT00950000182924.A.b.a.b #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000160665 #30	ENSGT00510000046470.a.a.a.d.b #31	ENSGT00940000157168 #32	ENSGT00940000156545 #33	ENSGT00940000159954 #34	ENSGT00940000159769.b #35	ENSGT00940000155279.C	ENSGT00940000154949.b
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842 #7	ENSGT00640000091487 #8	ENSGT01060000248588.a.c.b #9	ENSGT00390000012346 #10	ENSGT00940000155372 #11	ENSGT00950000183130.A #12	ENSGT00940000155988 #13	ENSGT01070000253744.a.b #15	ENSGT00510000046908.a.a.b #16	ENSGT00390000007586.a.b #17	ENSGT00940000158340 #18	ENSGT00940000153395.a #20	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570 #23	ENSGT00940000156337 #24	ENSGT00950000183027.b #25	ENSGT00950000183054.a.a.a #26	ENSGT00950000182924.A.b.a.b #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000160665 #30	ENSGT00510000046470.a.a.a.d.b #31	ENSGT00940000157168 #32	ENSGT00940000156545 #33	ENSGT00940000159954 #34	ENSGT00940000159769.b #35	ENSGT00940000155279.C	ENSGT00940000154949.b
Hystricomorpha_b	ANCESTRAL SPECIES	75	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842 #7	ENSGT00640000091487 #8	ENSGT01060000248588.a.c.b #9	ENSGT00390000012346 #10	ENSGT00940000155372 #11	ENSGT00950000183130.A #12	ENSGT00940000155988 #13	ENSGT01070000253744.a.b #15	ENSGT00510000046908.a.a.b #16	ENSGT00390000007586.a.b #17	ENSGT00940000158340 #18	ENSGT00940000153395.a #20	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570 #23	ENSGT00940000156337 #24	ENSGT00950000183027.b #25	ENSGT00950000183054.a.a.a #26	ENSGT00950000182924.A.b.a.b #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000160665 #30	ENSGT00510000046470.a.a.a.d.b #31	ENSGT00940000157168 #32	ENSGT00940000156545 #33	ENSGT00940000159954 #34	ENSGT00940000159769.b #35
Long-tailed chinchilla	MODERN SPECIES	135	ADAD1 (ENSCLAG00000004688) #7	BLTP1 (ENSCLAG00000007818) #8	TRPC3 (ENSCLAG00000003574) #9	BBS7 (ENSCLAG00000004340) #10	CCNA2 (ENSCLAG00000003880) #11	EXOSC9 (ENSCLAG00000004644) #12	ANXA5 (ENSCLAG00000004278) #13	ENSCLAG00000005382 #14	QRFPR (ENSCLAG00000006789) #15	TNIP3 (ENSCLAG00000004304) #16	NDNF (ENSCLAG00000004819) #17	PRDM5 (ENSCLAG00000005392) #18	ENSCLAG00000003295 #19	MAD2L1 (ENSCLAG00000003756) #20	PDE5A (ENSCLAG00000004806) #21	FABP2 (ENSCLAG00000004293) #22	C4orf3 (ENSCLAG00000005064) #23	USP53 (ENSCLAG00000005403) #24	MYOZ2 (ENSCLAG00000003567) #25	SYNPO2 (ENSCLAG00000004412) #26	SEC24D (ENSCLAG00000009632) #27	METTL14 (ENSCLAG00000013189) #28	PRSS12 (ENSCLAG00000003330) #29	NDST3 (ENSCLAG00000004346) #30	TRAM1L1 (ENSCLAG00000016886) #31	NDST4 (ENSCLAG00000010385) #32	UGT8 (ENSCLAG00000006668) #33	ARSJ (ENSCLAG00000007365) #34	ENSCLAG00000004040 #35
Degu	MODERN SPECIES	237								QRFPR (ENSODEG00000011261) #15	ENSODEG00000009181 #16	NDNF (ENSODEG00000008963) #17	PRDM5 (ENSODEG00000009133) #18	MAD2L1 (ENSODEG00000008659) #20	ENSODEG00000009337	ENSODEG00000009724	PDE5A (ENSODEG00000009775) #21	FABP2 (ENSODEG00000009356) #22	ENSODEG00000009751 #24	C4orf3 (ENSODEG00000009429) #23	MYOZ2 (ENSODEG00000010060) #25	SYNPO2 (ENSODEG00000008964) #26	ENSODEG00000009862	SEC24D (ENSODEG00000009782) #27	ENSODEG00000008761 #28	ENSODEG00000010268	PRSS12 (ENSODEG00000011205) #29	NDST3 (ENSODEG00000009516) #30
Guinea pig	MODERN SPECIES	7	IL21 (ENSCPOG00000012431)	IL2 (ENSCPOG00000008265)	ADAD1 (ENSCPOG00000014455) #7	BLTP1 (ENSCPOG00000010581) #8	TRPC3 (ENSCPOG00000001231) #9	BBS7 (ENSCPOG00000001229) #10	CCNA2 (ENSCPOG00000010373) #11	EXOSC9 (ENSCPOG00000034344) #12	ANXA5 (ENSCPOG00000038586) #13	QRFPR (ENSCPOG00000001530) #15	TNIP3 (ENSCPOG00000003813) #16	NDNF (ENSCPOG00000009703) #17	PRDM5 (ENSCPOG00000012883) #18	MAD2L1 (ENSCPOG00000030145) #20	PDE5A (ENSCPOG00000008756) #21	FABP2 (ENSCPOG00000008750) #22	C4orf3 (ENSCPOG00000021561) #23	ENSCPOG00000001323 #24	MYOZ2 (ENSCPOG00000007291) #25	SYNPO2 (ENSCPOG00000020548) #26	SEC24D (ENSCPOG00000004621) #27	METTL14 (ENSCPOG00000037880) #28	PRSS12 (ENSCPOG00000010027) #29	NDST3 (ENSCPOG00000003838) #30