Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00390000003555	ENSGT00940000156842 #7	ENSGT00640000091487 #8	ENSGT01060000248588.a.c.b #9	ENSGT00390000012346 #10	ENSGT00940000155372 #11	ENSGT00950000183130.A #12	ENSGT01010000222815	ENSGT00940000155988 #13	ENSGT01070000253744.a.b #15	ENSGT00510000046908.a.a.b #16	ENSGT00390000007586.a.b #17	ENSGT00940000158340 #18	ENSGT00940000153395.a #20	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570 #23	ENSGT00940000156337 #24	ENSGT00950000183027.b #25	ENSGT00950000183054.a.a.a #26	ENSGT00950000182924.A.b.a.b #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000160665 #30	ENSGT00510000046470.a.a.a.d.b #31	ENSGT00940000157168 #32	ENSGT00940000156545 #33	ENSGT00940000159954 #34	ENSGT00940000155150.a	ENSGT00940000155279.C	ENSGT00940000154949.b
Hystricomorpha	ANCESTRAL SPECIES	38	ENSGT00390000003555	ENSGT00940000156842 #7	ENSGT00640000091487 #8	ENSGT01060000248588.a.c.b #9	ENSGT00390000012346 #10	ENSGT00940000155372 #11	ENSGT00950000183130.A #12	ENSGT01010000222815	ENSGT00940000155988 #13	ENSGT01070000253744.a.b #15	ENSGT00510000046908.a.a.b #16	ENSGT00390000007586.a.b #17	ENSGT00940000158340 #18	ENSGT00940000153395.a #20	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570 #23	ENSGT00940000156337 #24	ENSGT00950000183027.b #25	ENSGT00950000183054.a.a.a #26	ENSGT00950000182924.A.b.a.b #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000160665 #30	ENSGT00510000046470.a.a.a.d.b #31	ENSGT00940000157168 #32	ENSGT00940000156545 #33	ENSGT00940000159954 #34	ENSGT00940000159769.b #35	ENSGT00940000155279.C	ENSGT00940000154949.b
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842 #7	ENSGT00640000091487 #8	ENSGT01060000248588.a.c.b #9	ENSGT00390000012346 #10	ENSGT00940000155372 #11	ENSGT00950000183130.A #12	ENSGT00940000155988 #13	ENSGT01070000253744.a.b #15	ENSGT00510000046908.a.a.b #16	ENSGT00390000007586.a.b #17	ENSGT00940000158340 #18	ENSGT00940000153395.a #20	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570 #23	ENSGT00940000156337 #24	ENSGT00950000183027.b #25	ENSGT00950000183054.a.a.a #26	ENSGT00950000182924.A.b.a.b #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000160665 #30	ENSGT00510000046470.a.a.a.d.b #31	ENSGT00940000157168 #32	ENSGT00940000156545 #33	ENSGT00940000159954 #34	ENSGT00940000159769.b #35	ENSGT00940000155279.C	ENSGT00940000154949.b
Hystricomorpha_b	ANCESTRAL SPECIES	75	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842 #7	ENSGT00640000091487 #8	ENSGT01060000248588.a.c.b #9	ENSGT00390000012346 #10	ENSGT00940000155372 #11	ENSGT00950000183130.A #12	ENSGT00940000155988 #13	ENSGT01070000253744.a.b #15	ENSGT00510000046908.a.a.b #16	ENSGT00390000007586.a.b #17	ENSGT00940000158340 #18	ENSGT00940000153395.a #20	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570 #23	ENSGT00940000156337 #24	ENSGT00950000183027.b #25	ENSGT00950000183054.a.a.a #26	ENSGT00950000182924.A.b.a.b #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00940000160665 #30	ENSGT00510000046470.a.a.a.d.b #31	ENSGT00940000157168 #32	ENSGT00940000156545 #33	ENSGT00940000159954 #34	ENSGT00940000159769.b #35
Long-tailed chinchilla	MODERN SPECIES	135	ADAD1 (ENSCLAG00000004688) #7	BLTP1 (ENSCLAG00000007818) #8	TRPC3 (ENSCLAG00000003574) #9	BBS7 (ENSCLAG00000004340) #10	CCNA2 (ENSCLAG00000003880) #11	EXOSC9 (ENSCLAG00000004644) #12	ANXA5 (ENSCLAG00000004278) #13	ENSCLAG00000005382 #14	QRFPR (ENSCLAG00000006789) #15	TNIP3 (ENSCLAG00000004304) #16	NDNF (ENSCLAG00000004819) #17	PRDM5 (ENSCLAG00000005392) #18	ENSCLAG00000003295 #19	MAD2L1 (ENSCLAG00000003756) #20	PDE5A (ENSCLAG00000004806) #21	FABP2 (ENSCLAG00000004293) #22	C4orf3 (ENSCLAG00000005064) #23	USP53 (ENSCLAG00000005403) #24	MYOZ2 (ENSCLAG00000003567) #25	SYNPO2 (ENSCLAG00000004412) #26	SEC24D (ENSCLAG00000009632) #27	METTL14 (ENSCLAG00000013189) #28	PRSS12 (ENSCLAG00000003330) #29	NDST3 (ENSCLAG00000004346) #30	TRAM1L1 (ENSCLAG00000016886) #31	NDST4 (ENSCLAG00000010385) #32	UGT8 (ENSCLAG00000006668) #33	ARSJ (ENSCLAG00000007365) #34	ENSCLAG00000004040 #35
Degu	MODERN SPECIES	237								QRFPR (ENSODEG00000011261) #15	ENSODEG00000009181 #16	NDNF (ENSODEG00000008963) #17	PRDM5 (ENSODEG00000009133) #18	MAD2L1 (ENSODEG00000008659) #20	ENSODEG00000009337	ENSODEG00000009724	PDE5A (ENSODEG00000009775) #21	FABP2 (ENSODEG00000009356) #22	ENSODEG00000009751 #24	C4orf3 (ENSODEG00000009429) #23	MYOZ2 (ENSODEG00000010060) #25	SYNPO2 (ENSODEG00000008964) #26	ENSODEG00000009862	SEC24D (ENSODEG00000009782) #27	ENSODEG00000008761 #28	ENSODEG00000010268	PRSS12 (ENSODEG00000011205) #29	NDST3 (ENSODEG00000009516) #30
Guinea pig	MODERN SPECIES	7	IL21 (ENSCPOG00000012431)	IL2 (ENSCPOG00000008265)	ADAD1 (ENSCPOG00000014455) #7	BLTP1 (ENSCPOG00000010581) #8	TRPC3 (ENSCPOG00000001231) #9	BBS7 (ENSCPOG00000001229) #10	CCNA2 (ENSCPOG00000010373) #11	EXOSC9 (ENSCPOG00000034344) #12	ANXA5 (ENSCPOG00000038586) #13	QRFPR (ENSCPOG00000001530) #15	TNIP3 (ENSCPOG00000003813) #16	NDNF (ENSCPOG00000009703) #17	PRDM5 (ENSCPOG00000012883) #18	MAD2L1 (ENSCPOG00000030145) #20	PDE5A (ENSCPOG00000008756) #21	FABP2 (ENSCPOG00000008750) #22	C4orf3 (ENSCPOG00000021561) #23	ENSCPOG00000001323 #24	MYOZ2 (ENSCPOG00000007291) #25	SYNPO2 (ENSCPOG00000020548) #26	SEC24D (ENSCPOG00000004621) #27	METTL14 (ENSCPOG00000037880) #28	PRSS12 (ENSCPOG00000010027) #29	NDST3 (ENSCPOG00000003838) #30
Sciuridae	ANCESTRAL SPECIES	38	ENSGT00390000003555	ENSGT00940000156842 #7	ENSGT00640000091487 #8	ENSGT01060000248588.a.c.b #9	ENSGT00390000012346 #10	ENSGT00940000155372 #11	ENSGT00950000183130.A #12	ENSGT01010000222815	ENSGT00940000155988 #13	ENSGT01070000253744.a.b #15	ENSGT00510000046908.a.a.b #16	ENSGT00390000007586.a.b #17	ENSGT00940000158340 #18	ENSGT00940000153395.a #20	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00940000156337 #24	ENSGT00950000183027.b #25	ENSGT00950000183054.a.a.a #26	ENSGT01060000248649.a	ENSGT00950000182924.A.b.a.b #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00390000014067
Marmotini	ANCESTRAL SPECIES	123															ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00940000156337 #24	ENSGT00950000183027.b #25	ENSGT00950000183054.a.a.a #26	ENSGT01060000248649.a	ENSGT00950000182924.A.b.a.b #27	ENSGT00550000075003 #28	ENSGT00940000158131 #29	ENSGT00390000014067
Marmotini_b	ANCESTRAL SPECIES	269															ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00940000156337 #24	ENSGT00950000183027.b #25	ENSGT00950000183054.a.a.a #26	ENSGT00950000182924.A.b.a.b #27	ENSGT00550000075003 #28
Squirrel	MODERN SPECIES	468															PDE5A (ENSSTOG00000025252) #21	FABP2 (ENSSTOG00000004216) #22	USP53 (ENSSTOG00000004182) #24	MYOZ2 (ENSSTOG00000013812) #25	SEC24D (ENSSTOG00000014719) #27	METTL14 (ENSSTOG00000014707) #28
Arctic ground squirrel	MODERN SPECIES	774															PDE5A (ENSUPAG00010004525) #21	FABP2 (ENSUPAG00010004517) #22	USP53 (ENSUPAG00010004495) #24	MYOZ2 (ENSUPAG00010004487) #25	SYNPO2 (ENSUPAG00010004465) #26
Alpin marmot	MODERN SPECIES	145														PDE5A (ENSMMMG00000022246) #21	ENSMMMG00000022243	FABP2 (ENSMMMG00000022242) #22	ENSMMMG00000022227 #24	MYOZ2 (ENSMMMG00000022226) #25	SYNPO2 (ENSMMMG00000022215) #26	ENSMMMG00000021544	METTL14 (ENSMMMG00000021528) #28	PRSS12 (ENSMMMG00000021522) #29	CCDC190 (ENSMMMG00000021515)
Eurasian red squirrel	MODERN SPECIES	18	ENSSVLG00005016021 #7	BLTP1 (ENSSVLG00005015963) #8	TRPC3 (ENSSVLG00005015770) #9	BBS7 (ENSSVLG00005015419) #10	CCNA2 (ENSSVLG00005015372) #11	ENSSVLG00005015214 #12	SMIM43 (ENSSVLG00005015189)	ANXA5 (ENSSVLG00005014980) #13	ENSSVLG00005014925	QRFPR (ENSSVLG00005014858) #15	NDNF (ENSSVLG00005014362) #17	PRDM5 (ENSSVLG00005014293) #18	MAD2L1 (ENSSVLG00005014204) #20	ENSSVLG00005014083	PDE5A (ENSSVLG00005013841) #21	FABP2 (ENSSVLG00005013640) #22	USP53 (ENSSVLG00005013592) #24	MYOZ2 (ENSSVLG00005013483) #25	ENSSVLG00005013417 ##26	SEC24D (ENSSVLG00005013288) #27	METTL14 (ENSSVLG00005013085) #28	PRSS12 (ENSSVLG00005012955) #29	ENSSVLG00005012895	ENSSVLG00005012798	ENSSVLG00005012769