Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT01010000222815	ENSGT00940000155988	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570	ENSGT00940000156337 #23	ENSGT00950000183027.b #24	ENSGT00950000183054.a.a.a #25	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665	ENSGT00510000046470.a.a.a.d.b	ENSGT00940000157168	ENSGT00940000156545	ENSGT00940000159954	ENSGT00940000155150.a	ENSGT00940000155279.C	ENSGT00940000154949.b
Sciuridae	ANCESTRAL SPECIES	38	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT01010000222815	ENSGT00940000155988	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00940000156337 #23	ENSGT00950000183027.b #24	ENSGT00950000183054.a.a.a #25	ENSGT01060000248649.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00390000014067
Marmotini	ANCESTRAL SPECIES	123															ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00940000156337 #23	ENSGT00950000183027.b #24	ENSGT00950000183054.a.a.a #25	ENSGT01060000248649.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00390000014067
Marmotini_b	ANCESTRAL SPECIES	269															ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00940000156337 #23	ENSGT00950000183027.b #24	ENSGT00950000183054.a.a.a #25	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003
Arctic ground squirrel	MODERN SPECIES	774															PDE5A (ENSUPAG00010004525) #21	FABP2 (ENSUPAG00010004517) #22	USP53 (ENSUPAG00010004495) #23	MYOZ2 (ENSUPAG00010004487) #24	SYNPO2 (ENSUPAG00010004465) #25
Squirrel	MODERN SPECIES	468															PDE5A (ENSSTOG00000025252) #21	FABP2 (ENSSTOG00000004216) #22	USP53 (ENSSTOG00000004182) #23	MYOZ2 (ENSSTOG00000013812) #24	SEC24D (ENSSTOG00000014719)	METTL14 (ENSSTOG00000014707)
Alpin marmot	MODERN SPECIES	145														PDE5A (ENSMMMG00000022246) #21	ENSMMMG00000022243	FABP2 (ENSMMMG00000022242) #22	ENSMMMG00000022227 #23	MYOZ2 (ENSMMMG00000022226) #24	SYNPO2 (ENSMMMG00000022215) #25	ENSMMMG00000021544	METTL14 (ENSMMMG00000021528)	PRSS12 (ENSMMMG00000021522)	CCDC190 (ENSMMMG00000021515)
Eurasian red squirrel	MODERN SPECIES	18	ENSSVLG00005016021	BLTP1 (ENSSVLG00005015963)	TRPC3 (ENSSVLG00005015770)	BBS7 (ENSSVLG00005015419)	CCNA2 (ENSSVLG00005015372)	ENSSVLG00005015214	SMIM43 (ENSSVLG00005015189)	ANXA5 (ENSSVLG00005014980)	ENSSVLG00005014925	QRFPR (ENSSVLG00005014858)	NDNF (ENSSVLG00005014362)	PRDM5 (ENSSVLG00005014293)	MAD2L1 (ENSSVLG00005014204)	ENSSVLG00005014083	PDE5A (ENSSVLG00005013841) #21	FABP2 (ENSSVLG00005013640) #22	USP53 (ENSSVLG00005013592) #23	MYOZ2 (ENSSVLG00005013483) #24	ENSSVLG00005013417 ##25	SEC24D (ENSSVLG00005013288)	METTL14 (ENSSVLG00005013085)	PRSS12 (ENSSVLG00005012955)	ENSSVLG00005012895	ENSSVLG00005012798	ENSSVLG00005012769
Hystricomorpha	ANCESTRAL SPECIES	38	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT01010000222815	ENSGT00940000155988	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570	ENSGT00940000156337 #23	ENSGT00950000183027.b #24	ENSGT00950000183054.a.a.a #25	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665	ENSGT00510000046470.a.a.a.d.b	ENSGT00940000157168	ENSGT00940000156545	ENSGT00940000159954	ENSGT00940000159769.b	ENSGT00940000155279.C	ENSGT00940000154949.b
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT00940000155988	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570	ENSGT00940000156337 #23	ENSGT00950000183027.b #24	ENSGT00950000183054.a.a.a #25	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665	ENSGT00510000046470.a.a.a.d.b	ENSGT00940000157168	ENSGT00940000156545	ENSGT00940000159954	ENSGT00940000159769.b	ENSGT00940000155279.C	ENSGT00940000154949.b
Guinea pig	MODERN SPECIES	7	IL21 (ENSCPOG00000012431)	IL2 (ENSCPOG00000008265)	ADAD1 (ENSCPOG00000014455)	BLTP1 (ENSCPOG00000010581)	TRPC3 (ENSCPOG00000001231)	BBS7 (ENSCPOG00000001229)	CCNA2 (ENSCPOG00000010373)	EXOSC9 (ENSCPOG00000034344)	ANXA5 (ENSCPOG00000038586)	QRFPR (ENSCPOG00000001530)	TNIP3 (ENSCPOG00000003813)	NDNF (ENSCPOG00000009703)	PRDM5 (ENSCPOG00000012883)	MAD2L1 (ENSCPOG00000030145)	PDE5A (ENSCPOG00000008756) #21	FABP2 (ENSCPOG00000008750) #22	C4orf3 (ENSCPOG00000021561)	ENSCPOG00000001323 #23	MYOZ2 (ENSCPOG00000007291) #24	SYNPO2 (ENSCPOG00000020548) #25	SEC24D (ENSCPOG00000004621)	METTL14 (ENSCPOG00000037880)	PRSS12 (ENSCPOG00000010027)	NDST3 (ENSCPOG00000003838)
Hystricomorpha_b	ANCESTRAL SPECIES	75	ENSGT00390000010494	ENSGT00390000003555	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372	ENSGT00950000183130.A	ENSGT00940000155988	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00940000155475 #21	ENSGT00800000124172 #22	ENSGT00530000064570	ENSGT00940000156337 #23	ENSGT00950000183027.b #24	ENSGT00950000183054.a.a.a #25	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665	ENSGT00510000046470.a.a.a.d.b	ENSGT00940000157168	ENSGT00940000156545	ENSGT00940000159954	ENSGT00940000159769.b
Degu	MODERN SPECIES	237								QRFPR (ENSODEG00000011261)	ENSODEG00000009181	NDNF (ENSODEG00000008963)	PRDM5 (ENSODEG00000009133)	MAD2L1 (ENSODEG00000008659)	ENSODEG00000009337	ENSODEG00000009724	PDE5A (ENSODEG00000009775) #21	FABP2 (ENSODEG00000009356) #22	ENSODEG00000009751 #23	C4orf3 (ENSODEG00000009429)	MYOZ2 (ENSODEG00000010060) #24	SYNPO2 (ENSODEG00000008964) #25	ENSODEG00000009862	SEC24D (ENSODEG00000009782)	ENSODEG00000008761	ENSODEG00000010268	PRSS12 (ENSODEG00000011205)	NDST3 (ENSODEG00000009516)
Long-tailed chinchilla	MODERN SPECIES	135	ADAD1 (ENSCLAG00000004688)	BLTP1 (ENSCLAG00000007818)	TRPC3 (ENSCLAG00000003574)	BBS7 (ENSCLAG00000004340)	CCNA2 (ENSCLAG00000003880)	EXOSC9 (ENSCLAG00000004644)	ANXA5 (ENSCLAG00000004278)	ENSCLAG00000005382	QRFPR (ENSCLAG00000006789)	TNIP3 (ENSCLAG00000004304)	NDNF (ENSCLAG00000004819)	PRDM5 (ENSCLAG00000005392)	ENSCLAG00000003295	MAD2L1 (ENSCLAG00000003756)	PDE5A (ENSCLAG00000004806) #21	FABP2 (ENSCLAG00000004293) #22	C4orf3 (ENSCLAG00000005064)	USP53 (ENSCLAG00000005403) #23	MYOZ2 (ENSCLAG00000003567) #24	SYNPO2 (ENSCLAG00000004412) #25	SEC24D (ENSCLAG00000009632)	METTL14 (ENSCLAG00000013189)	PRSS12 (ENSCLAG00000003330)	NDST3 (ENSCLAG00000004346)	TRAM1L1 (ENSCLAG00000016886)	NDST4 (ENSCLAG00000010385)	UGT8 (ENSCLAG00000006668)	ARSJ (ENSCLAG00000007365)	ENSCLAG00000004040