Sarcopterygii	ANCESTRAL SPECIES	54	ENSGT00940000159704	ENSGT00940000162838	ENSGT00390000007046.b.a.a	ENSGT00950000182767.b.a.b.b.a	ENSGT00940000156965	ENSGT00390000016976	ENSGT00940000154544 #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00660000097267	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a
Tetrapoda	ANCESTRAL SPECIES	15	ENSGT00940000157404	ENSGT00940000159704	ENSGT00940000162838	ENSGT00390000007046.b.a.a	ENSGT00950000182767.b.a.b.b.a	ENSGT00940000156965	ENSGT00390000016976	ENSGT00940000154544 #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00940000154186.a #31	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36	ENSGT00530000063410.a #37
Amniota	ANCESTRAL SPECIES	12	ENSGT00940000162977	ENSGT00940000170045	ENSGT00940000162838	ENSGT00390000007046.b.a.a	ENSGT00950000182767.b.a.b.b.a	ENSGT00940000156965	ENSGT00390000016976	ENSGT00940000154544 #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00810000125473.A #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00390000001858 #32	ENSGT00940000154186.a #31	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36	ENSGT00530000063410.a #37
Mammalia	ANCESTRAL SPECIES	22	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00940000154544 #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00810000125473.A #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00390000001858 #32	ENSGT00940000154186.a #31	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36	ENSGT00530000063410.a #37
Theria	ANCESTRAL SPECIES	13	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00940000154544 #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00810000125473.A #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00940000154186.a #31	ENSGT00390000001858 #32	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36	ENSGT00530000063410.a #37
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000158488	ENSGT00940000156522 #7	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00810000125473.A #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00390000001858 #32	ENSGT00940000154186.a #31	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36	ENSGT00530000063410.a #37
Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT00940000158488	ENSGT00940000156522 #7	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00810000125473.A #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00390000001858 #32	ENSGT00940000154186.a #31	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00940000158488	ENSGT00940000156522 #7	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00910000147398	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00810000125473.A #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00390000001858 #32	ENSGT00940000154186.a #31	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00940000158488	ENSGT00940000156522 #7	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00960000190724	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00810000125473.A #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00390000001858 #32	ENSGT00940000154186.a #31	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36
Glires	ANCESTRAL SPECIES	13	ENSGT00940000158488	ENSGT00940000156522 #7	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00960000190724	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00810000125473.A #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00940000154186.a #31	ENSGT00390000001858 #32	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36
Rodentia	ANCESTRAL SPECIES	15	ENSGT00940000158488	ENSGT00940000156522 #7	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00960000190724	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00810000125473.A #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00940000154186.a #31	ENSGT00390000001858 #32	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000158488	ENSGT00940000156522 #7	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00960000190724	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00810000125473.A #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00390000001858 #32	ENSGT00940000154186.a #31	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00940000158488	ENSGT00940000156522 #7	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00810000125473.A.f #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00390000001858 #32	ENSGT00940000154186.a #31	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36	ENSGT00530000063410.a #37
Hystricomorpha_a	ANCESTRAL SPECIES	35	ENSGT00940000158488	ENSGT00940000156522 #7	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #26	ENSGT00940000154958 #27	ENSGT00810000125473.A.f #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00940000154186.a #31	ENSGT00390000001858 #32	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36	ENSGT00530000063410.a #37
Hystricomorpha_b	ANCESTRAL SPECIES	33	ENSGT00940000158488	ENSGT00940000156522 #7	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #14	ENSGT00390000010591 #15	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #25	ENSGT00940000154556 #26	ENSGT00940000154958.y #27	ENSGT00810000125473.A.f #28	ENSGT00940000157081 #29	ENSGT00530000063867.b #30	ENSGT00940000154186.a #31	ENSGT00390000001858 #32	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #35	ENSGT00940000153464.B #36	ENSGT00530000063410.a #37
Long-tailed chinchilla	MODERN SPECIES	131	ANTXR1 (ENSCLAG00000011983) #7	ENSCLAG00000010348 #8	GKN1 (ENSCLAG00000010820) #9	GKN2 (ENSCLAG00000015981) #10	ENSCLAG00000007045 #11	BMP10 (ENSCLAG00000007285) #12	ARHGAP25 (ENSCLAG00000007583) #13	PROKR1 (ENSCLAG00000008825) #14	APLF (ENSCLAG00000009519) #15	FBXO48 (ENSCLAG00000010201) #16	PLEK (ENSCLAG00000010835) #17	CNRIP1 (ENSCLAG00000012035) #18	PPP3R1 (ENSCLAG00000012159) #19	PNO1 (ENSCLAG00000015058) #20	DNAAF10 (ENSCLAG00000014702) #21	C1D (ENSCLAG00000011883) #22	ETAA1 (ENSCLAG00000013575) #23	MEIS1 (ENSCLAG00000010420) #24	SPRED2 (ENSCLAG00000011449) #25	ACTR2 (ENSCLAG00000010920) #26	RAB1A (ENSCLAG00000014766) #27	CEP68 (ENSCLAG00000012193) #28	SLC1A4 (ENSCLAG00000008207) #29	SERTAD2 (ENSCLAG00000008318) #30	AFTPH (ENSCLAG00000012032) #31	ENSCLAG00000012344 #32	LGALSL (ENSCLAG00000015114) #33	PELI1 (ENSCLAG00000006481) #34	VPS54 (ENSCLAG00000007366) #35	UGP2 (ENSCLAG00000010416) #36	MDH1 (ENSCLAG00000007815) #37