Percora_a	ANCESTRAL SPECIES	13	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #15	ENSGT00390000010591 #14	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #26	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154958 #29	ENSGT00810000125473.A	ENSGT00940000157081 #30	ENSGT00530000063867.b #32	ENSGT00940000154186.a	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Bovidae	ANCESTRAL SPECIES	5	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #15	ENSGT00390000010591 #14	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #26	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154958 #29	ENSGT00810000125473.A	ENSGT00940000157081 #30	ENSGT00530000063867.b #32	ENSGT00940000154186.a	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a
Caprinae	ANCESTRAL SPECIES	9	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #15	ENSGT00390000010591 #14	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #26	ENSGT00910000147214	ENSGT00940000154556 #27	ENSGT00940000154958 #29	ENSGT00810000125473.A	ENSGT00940000157081 #30	ENSGT00940000154186.a	ENSGT00940000155337.h #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a.i	ENSGT00390000016551
Rambouillet Sheep	MODERN SPECIES	19	GFPT1 (ENSOARG00020006596) #7	ANTXR1 (ENSOARG00020006876) #8	GKN1 (ENSOARG00020006983) #9	GKN2 (ENSOARG00020007101) #10	ENSOARG00020007185 #11	BMP10 (ENSOARG00020007232) #12	ARHGAP25 (ENSOARG00020007287) #13	APLF (ENSOARG00020007769) #14	PROKR1 (ENSOARG00020007957) #15	FBXO48 (ENSOARG00020007981) #16	PLEK (ENSOARG00020000213) #17	CNRIP1 (ENSOARG00020000300) #18	PPP3R1 (ENSOARG00020000338) #19	PNO1 (ENSOARG00020000405) #20	DNAAF10 (ENSOARG00020000424) #21	C1D (ENSOARG00020000448) #22	ETAA1 (ENSOARG00020000471) #23	MEIS1 (ENSOARG00020000528) #24	ENSOARG00020000610 #25	SPRED2 (ENSOARG00020000634) #26	ACTR2 (ENSOARG00020000701) #27	ENSOARG00020000747 #28	RAB1A (ENSOARG00020000781) #29	SLC1A4 (ENSOARG00020000870) #30	ENSOARG00020000886 #31	SERTAD2 (ENSOARG00020000894) #32	LGALSL (ENSOARG00020000922) #33	PELI1 (ENSOARG00020000937) #34	ENSOARG00020000952 #35	VPS54 (ENSOARG00020000984) #36	UGP2 (ENSOARG00020001100) #37
Goat	MODERN SPECIES	2	GFPT1 (ENSCHIG00000021854) #7	ANTXR1 (ENSCHIG00000023428) #8	GKN1 (ENSCHIG00000021005) #9	GKN2 (ENSCHIG00000018418) #10	ENSCHIG00000002541 #11	BMP10 (ENSCHIG00000026064) #12	ARHGAP25 (ENSCHIG00000025694) #13	PROKR1 (ENSCHIG00000015056) #15	APLF (ENSCHIG00000015145) #14	FBXO48 (ENSCHIG00000018110) #16	PLEK (ENSCHIG00000017674) #17	CNRIP1 (ENSCHIG00000017116) #18	PPP3R1 (ENSCHIG00000004688) #19	PNO1 (ENSCHIG00000012839) #20	DNAAF10 (ENSCHIG00000022762) #21	C1D (ENSCHIG00000025729) #22	ETAA1 (ENSCHIG00000027011) #23	MEIS1 (ENSCHIG00000027207) #24	SPRED2 (ENSCHIG00000013086) #26	ENSCHIG00000027162	ACTR2 (ENSCHIG00000014272) #27	RAB1A (ENSCHIG00000014060) #29	CEP68 (ENSCHIG00000025433)	SLC1A4 (ENSCHIG00000025336) #30	ENSCHIG00000007620 #31	AFTPH (ENSCHIG00000009404)	LGALSL (ENSCHIG00000026638) #33	PELI1 (ENSCHIG00000022027) #34	ENSCHIG00000003100 ##35	VPS54 (ENSCHIG00000010990) #36	UGP2 (ENSCHIG00000021810) #37
Bovinae	ANCESTRAL SPECIES	4	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #15	ENSGT00390000010591 #14	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #26	ENSGT00940000154556 #27	ENSGT00940000154958 #29	ENSGT00810000125473.A	ENSGT00940000157081 #30	ENSGT00530000063867.b #32	ENSGT00940000154186.a	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000016551
Bos	ANCESTRAL SPECIES	5	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #15	ENSGT00390000010591 #14	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #26	ENSGT00940000154556.ib #27	ENSGT00940000154958 #29	ENSGT00810000125473.A	ENSGT00940000157081 #30	ENSGT00530000063867.b #32	ENSGT00940000154186.a	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000011179.o.a
Bos_a	ANCESTRAL SPECIES	6	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #15	ENSGT00390000010591 #14	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #26	ENSGT00940000154556.ib #27	ENSGT00940000154958 #29	ENSGT00810000125473.A	ENSGT00940000157081 #30	ENSGT00530000063867.b #32	ENSGT00940000154186.a	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000011179.o.a
Wild yak	MODERN SPECIES	577															DNAAF10 (ENSBMUG00000020199) #21	C1D (ENSBMUG00000020190) #22	ETAA1 (ENSBMUG00000020179) #23	MEIS1 (ENSBMUG00000020154) #24	SPRED2 (ENSBMUG00000020108) #26	ENSBMUG00000020074 #27	RAB1A (ENSBMUG00000020049) #29	CEP68 (ENSBMUG00000020034)	SLC1A4 (ENSBMUG00000019988) #30
Domestic yak	MODERN SPECIES	28	NFU1 (ENSBGRG00000004641)	GFPT1 (ENSBGRG00000004514) #7	ANTXR1 (ENSBGRG00000004323) #8	GKN1 (ENSBGRG00000004227) #9	GKN2 (ENSBGRG00000004175) #10	ENSBGRG00000004101 #11	BMP10 (ENSBGRG00000004060) #12	ARHGAP25 (ENSBGRG00000003917) #13	PROKR1 (ENSBGRG00000003888) #15	APLF (ENSBGRG00000003735) #14	FBXO48 (ENSBGRG00000003679) #16	PLEK (ENSBGRG00000003648) #17	CNRIP1 (ENSBGRG00000003591) #18	PNO1 (ENSBGRG00000003558) #20	DNAAF10 (ENSBGRG00000013337) #21	C1D (ENSBGRG00000013288) #22	ENSBGRG00000013266	ETAA1 (ENSBGRG00000013146) #23	ENSBGRG00000013128	MEIS1 (ENSBGRG00000012913) #24	SPRED2 (ENSBGRG00000012585) #26	ACTR2 (ENSBGRG00000012280) #27	RAB1A (ENSBGRG00000012081) #29	CEP68 (ENSBGRG00000011823)	SLC1A4 (ENSBGRG00000011713) #30	SERTAD2 (ENSBGRG00000011678) #32	AFTPH (ENSBGRG00000011500)	ENSBGRG00000011374 #33	PELI1 (ENSBGRG00000011236) #34	VPS54 (ENSBGRG00000010687) #36	UGP2 (ENSBGRG00000010367) #37
Bos_b	ANCESTRAL SPECIES	16	ENSGT00940000158488 #7	ENSGT00940000156522 #8	ENSGT00930000150969.A.c.b.a #9	ENSGT00930000150969.A.c.a #10	ENSGT00930000150969.A.c.b.b #11	ENSGT00940000156279 #12	ENSGT00950000183015.A #13	ENSGT00940000154544.a #15	ENSGT00390000010591 #14	ENSGT00390000012248 #16	ENSGT00940000157885 #17	ENSGT00390000004284 #18	ENSGT00940000156530.c #19	ENSGT00390000018052 #20	ENSGT00950000183091.A.b #21	ENSGT00390000015405 #22	ENSGT00390000009597 #23	ENSGT00940000156327 #24	ENSGT00940000156841 #26	ENSGT00940000154556.ib #27	ENSGT00940000154958 #29	ENSGT00810000125473.A	ENSGT00940000157081 #30	ENSGT00530000063867.b #32	ENSGT00940000154186.a	ENSGT00940000155337 #33	ENSGT00950000183050.b.b.a #34	ENSGT00390000000583 #36	ENSGT00940000153464.B #37	ENSGT00530000063410.a	ENSGT00390000011179.o.a
Hybrid Bos Indicus	MODERN SPECIES	2	GKN1 (ENSBIXG00005008210) #9	GKN2 (ENSBIXG00005008219) #10	ENSBIXG00005008228 #11	BMP10 (ENSBIXG00005008241) #12	ENSBIXG00005008244	ARHGAP25 (ENSBIXG00005008280) #13	PROKR1 (ENSBIXG00005008293) #15	ENSBIXG00005008303	APLF (ENSBIXG00005008315) #14	FBXO48 (ENSBIXG00005008327) #16	PLEK (ENSBIXG00005008346) #17	ENSBIXG00005008358	ENSBIXG00005000174 #18	PNO1 (ENSBIXG00005000175) #20	DNAAF10 (ENSBIXG00005008434) #21	C1D (ENSBIXG00005000197) #22	ETAA1 (ENSBIXG00005008485) #23	MEIS1 (ENSBIXG00005000216) #24	SPRED2 (ENSBIXG00005000234) #26	ACTR2 (ENSBIXG00005008678) #27	CEP68 (ENSBIXG00005006085)	SLC1A4 (ENSBIXG00005008778) #30	ENSBIXG00005008797	RAB1A (ENSBIXG00005000282) #29	SERTAD2 (ENSBIXG00005008870) #32	AFTPH (ENSBIXG00005008912)	ENSBIXG00005008944 #33	PELI1 (ENSBIXG00005008978) #34	VPS54 (ENSBIXG00005009062) #36	UGP2 (ENSBIXG00005009159) #37	MDH1 (ENSBIXG00005009206)
Cow	MODERN SPECIES	2	GFPT1 (ENSBTAG00000017626) #7	ANTXR1 (ENSBTAG00000007808) #8	GKN1 (ENSBTAG00000012949) #9	GKN2 (ENSBTAG00000017199) #10	ENSBTAG00000038835 #11	BMP10 (ENSBTAG00000000992) #12	ARHGAP25 (ENSBTAG00000023976) #13	PROKR1 (ENSBTAG00000050333) #15	APLF (ENSBTAG00000018401) #14	FBXO48 (ENSBTAG00000047772) #16	PLEK (ENSBTAG00000009658) #17	CNRIP1 (ENSBTAG00000001408) #18	PPP3R1 (ENSBTAG00000010619) #19	PNO1 (ENSBTAG00000010604) #20	DNAAF10 (ENSBTAG00000010595) #21	C1D (ENSBTAG00000049002) #22	ETAA1 (ENSBTAG00000011727) #23	MEIS1 (ENSBTAG00000008448) #24	SPRED2 (ENSBTAG00000019456) #26	ACTR2 (ENSBTAG00000009761) #27	RAB1A (ENSBTAG00000016720) #29	CEP68 (ENSBTAG00000016717)	SLC1A4 (ENSBTAG00000007763) #30	ENSBTAG00000050435	SERTAD2 (ENSBTAG00000049341) #32	AFTPH (ENSBTAG00000009299)	LGALSL (ENSBTAG00000055296) #33	ENSBTAG00000053585	PELI1 (ENSBTAG00000020865) #34	VPS54 (ENSBTAG00000000115) #36	UGP2 (ENSBTAG00000000111) #37
American bison	MODERN SPECIES	3132	GFPT1 (ENSBBBG00000016730) #7	ANTXR1 (ENSBBBG00000007995) #8	GKN1 (ENSBBBG00000004096) #9	GKN2 (ENSBBBG00000016594) #10	ENSBBBG00000000743 #11	BMP10 (ENSBBBG00000000758) #12	ARHGAP25 (ENSBBBG00000016580) #13	PROKR1 (ENSBBBG00000008335) #15	APLF (ENSBBBG00000016534) #14	FBXO48 (ENSBBBG00000016515) #16	PLEK (ENSBBBG00000016507) #17	CNRIP1 (ENSBBBG00000016489) #18	PPP3R1 (ENSBBBG00000004071) #19	PNO1 (ENSBBBG00000016461) #20	DNAAF10 (ENSBBBG00000016449) #21	C1D (ENSBBBG00000004066) #22	ENSBBBG00000016408 #23	SIDT1 (ENSBBBG00000004058)	USF3 (ENSBBBG00000016318)	NAA50 (ENSBBBG00000016293)	ATP6V1A (ENSBBBG00000016246)	GRAMD1C (ENSBBBG00000016223)	ZDHHC23 (ENSBBBG00000007081)	CCDC191 (ENSBBBG00000004018)	QTRT2 (ENSBBBG00000004001)	DRD3 (ENSBBBG00000016079)	TIGIT (ENSBBBG00000008552)	ZBTB20 (ENSBBBG00000016026)	GAP43 (ENSBBBG00000003984)	ENSBBBG00000016008	LSAMP (ENSBBBG00000015995)
Siberian musk deer	MODERN SPECIES	240	ANTXR1 (ENSMMSG00000010913) #8	GKN1 (ENSMMSG00000010979) #9	GKN2 (ENSMMSG00000011009) #10	ENSMMSG00000011056 #11	BMP10 (ENSMMSG00000011075) #12	ARHGAP25 (ENSMMSG00000011100) #13	PROKR1 (ENSMMSG00000011183) #15	APLF (ENSMMSG00000011197) #14	FBXO48 (ENSMMSG00000011229) #16	PLEK (ENSMMSG00000011254) #17	CNRIP1 (ENSMMSG00000011305) #18	ENSMMSG00000011356 #19	ENSMMSG00000011434	PNO1 (ENSMMSG00000011455) #20	DNAAF10 (ENSMMSG00000011471) #21	C1D (ENSMMSG00000011514) #22	ENSMMSG00000006279	ENSMMSG00000006311	ETAA1 (ENSMMSG00000006322) #23	MEIS1 (ENSMMSG00000006369) #24	SPRED2 (ENSMMSG00000006652) #26	ACTR2 (ENSMMSG00000006727) #27	ENSMMSG00000006773	RAB1A (ENSMMSG00000006809) #29	CEP68 (ENSMMSG00000006928)	SLC1A4 (ENSMMSG00000007010) #30	ENSMMSG00000007124	SERTAD2 (ENSMMSG00000007146) #32	AFTPH (ENSMMSG00000007162)	LGALSL (ENSMMSG00000007219) #33	PELI1 (ENSMMSG00000007255) #34