Rodentia	ANCESTRAL SPECIES	3	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Hystricomorpha	ANCESTRAL SPECIES	36	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145.vb #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Hystricomorpha_a	ANCESTRAL SPECIES	38	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145.vb #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Hystricomorpha_b	ANCESTRAL SPECIES	35	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145.vb #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Long-tailed chinchilla	MODERN SPECIES	157	SLC51B (ENSCLAG00000011594) #7	RASL12 (ENSCLAG00000011152) #8	KBTBD13 (ENSCLAG00000018082) #9	UBAP1L (ENSCLAG00000010285) #10	PDCD7 (ENSCLAG00000007922) #11	CLPX (ENSCLAG00000016601) #12	CILP (ENSCLAG00000014495) #13	PARP16 (ENSCLAG00000012092) #14	IGDCC3 (ENSCLAG00000010244) #15	IGDCC4 (ENSCLAG00000007751) #16	DPP8 (ENSCLAG00000014937) #17	HACD3 (ENSCLAG00000010725) #18	INTS14 (ENSCLAG00000009395) #19	SLC24A1 (ENSCLAG00000013073) #20	DENND4A (ENSCLAG00000007003) #21	RAB11A (ENSCLAG00000007435) #22	MEGF11 (ENSCLAG00000013146) #23	DIS3L (ENSCLAG00000005741) #24	TIPIN (ENSCLAG00000004924) #25	MAP2K1 (ENSCLAG00000013042) #26	SNAPC5 (ENSCLAG00000011660) #27	RPL4 (ENSCLAG00000010827) #28	ZWILCH (ENSCLAG00000010124) #29	LCTL (ENSCLAG00000004564) #30	ENSCLAG00000005550 #31	SMAD3 (ENSCLAG00000005027) #32	AAGAB (ENSCLAG00000008364) #33	IQCH (ENSCLAG00000011031) #34	C15orf61 (ENSCLAG00000008894) #35	MAP2K5 (ENSCLAG00000005277) #36	SKOR1 (ENSCLAG00000007488) #37
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	67	ENSODEG00000016276 #10	PDCD7 (ENSODEG00000016758) #11	ENSODEG00000016607	CLPX (ENSODEG00000016361) #12	CILP (ENSODEG00000016085) #13	ENSODEG00000020368	PARP16 (ENSODEG00000016601) #14	IGDCC3 (ENSODEG00000016285) #15	IGDCC4 (ENSODEG00000016455) #16	DPP8 (ENSODEG00000016356) #17	HACD3 (ENSODEG00000016975) #18	INTS14 (ENSODEG00000017006) #19	SLC24A1 (ENSODEG00000016047) #20	ENSODEG00000016544 #21	ENSODEG00000016435	ENSODEG00000016878 #22	MEGF11 (ENSODEG00000015967) #23	DIS3L (ENSODEG00000015811) #24	MAP2K1 (ENSODEG00000016739) #26	ENSODEG00000016495 ##28	ZWILCH (ENSODEG00000016374) #29	LCTL (ENSODEG00000016271) #30	ENSODEG00000020317	SMAD6 (ENSODEG00000016272) #31	SMAD3 (ENSODEG00000015739) #32	ENSODEG00000015886 #33	ENSODEG00000020336	IQCH (ENSODEG00000016134) #34	C15orf61 (ENSODEG00000016721) #35	ENSODEG00000016511	MAP2K5 (ENSODEG00000015607) #36
Degu	MODERN SPECIES	88	DENND5B (ENSODEG00000004914)	ENSODEG00000005420	ENSODEG00000005301	CAPRIN2 (ENSODEG00000005454)	ENSODEG00000004763	CAPS2 (ENSODEG00000005006)	KCNC2 (ENSODEG00000004528)	ENSODEG00000004940	TPH2 (ENSODEG00000005879)	TBC1D15 (ENSODEG00000005472)	ENSODEG00000019110	TMEM19 (ENSODEG00000007134)	THAP2 (ENSODEG00000007099)	ENSODEG00000007051	ENSODEG00000006640	ENSODEG00000005318 #22	LGR5 (ENSODEG00000005026)	ENSODEG00000005914	PTPRR (ENSODEG00000004892)	PTPRB (ENSODEG00000005212)	ENSODEG00000004686	KCNMB4 (ENSODEG00000004677)	CNOT2 (ENSODEG00000004532)	ENSODEG00000004175	BEST3 (ENSODEG00000004391)	LRRC10 (ENSODEG00000004356)	FRS2 (ENSODEG00000004174)	ENSODEG00000019177	ENSODEG00000005231	ENSODEG00000005050	LYZ (ENSODEG00000004742)
Degu	MODERN SPECIES	331														ENSODEG00000002423	ENSODEG00000002362	ENSODEG00000002343 #22	ENSODEG00000002260	ENSODEG00000002224	ENSODEG00000002218
Guinea pig	MODERN SPECIES	101	MYO1E (ENSCPOG00000002570)	CCNB2 (ENSCPOG00000026977)	RNF111 (ENSCPOG00000010550)	SLTM (ENSCPOG00000026109)	MINDY2 (ENSCPOG00000002287)	CLPX (ENSCPOG00000003391) #12	CILP (ENSCPOG00000036223) #13	PARP16 (ENSCPOG00000025232) #14	IGDCC3 (ENSCPOG00000006751) #15	IGDCC4 (ENSCPOG00000004519) #16	DPP8 (ENSCPOG00000014124) #17	HACD3 (ENSCPOG00000013593) #18	INTS14 (ENSCPOG00000000764) #19	SLC24A1 (ENSCPOG00000013596) #20	DENND4A (ENSCPOG00000013602) #21	RAB11A (ENSCPOG00000037599) #22	MEGF11 (ENSCPOG00000006468) #23	DIS3L (ENSCPOG00000000250) #24	TIPIN (ENSCPOG00000000251) #25	MAP2K1 (ENSCPOG00000003053) #26	RPL4 (ENSCPOG00000003055) #28	ZWILCH (ENSCPOG00000001241) #29	LCTL (ENSCPOG00000001245) #30	ENSCPOG00000026722	ENSCPOG00000003533	ENSCPOG00000013176	ENSCPOG00000015403
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	4	PRLHR (ENSHGLG00000009873)	CACUL1 (ENSHGLG00000009961)	ENSHGLG00000011185	NANOS1 (ENSHGLG00000045577)	EIF3A (ENSHGLG00000013260)	DENND10 (ENSHGLG00000010220)	ENSHGLG00000009711	ENSHGLG00000011210	ENSHGLG00000038210	GRK5 (ENSHGLG00000050923)	RGS10 (ENSHGLG00000037265)	ENSHGLG00000034213	TIAL1 (ENSHGLG00000013775)	ENSHGLG00000012192	BAG3 (ENSHGLG00000013505)	ENSHGLG00000042038 #22	INPP5F (ENSHGLG00000009930)	ENSHGLG00000011466	SEC23IP (ENSHGLG00000013752)	ENSHGLG00000045415	PLPP4 (ENSHGLG00000012927)	ENSHGLG00000044013	WDR11 (ENSHGLG00000010871)	ENSHGLG00000011201	ENSHGLG00000032507	ENSHGLG00000006514	ENSHGLG00000045128	ENSHGLG00000018201	NSMCE4A (ENSHGLG00000013057)	ENSHGLG00000035516	ENSHGLG00000014774
Naked mole-rat female	MODERN SPECIES	15	ENSHGLG00000048508	THAP7 (ENSHGLG00000038188)	LZTR1 (ENSHGLG00000000653)	AIFM3 (ENSHGLG00000001645)	CRKL (ENSHGLG00000044151)	SNAP29 (ENSHGLG00000047985)	ENSHGLG00000033418	ENSHGLG00000001184	ENSHGLG00000017122	CRYBB3 (ENSHGLG00000013224)	ENSHGLG00000006116	ENSHGLG00000011538	ENSHGLG00000048899	ENSHGLG00000013506	ENSHGLG00000017402	ENSHGLG00000042210 #22	ASPHD2 (ENSHGLG00000050850)	HPS4 (ENSHGLG00000006487)	SRRD (ENSHGLG00000007556)	TFIP11 (ENSHGLG00000008873)	TPST2 (ENSHGLG00000010327)	CRYBB1 (ENSHGLG00000010592)	CRYBA4 (ENSHGLG00000011408)	ENSHGLG00000047034	MN1 (ENSHGLG00000005808)	ENSHGLG00000006229	ENSHGLG00000035833	TTC28 (ENSHGLG00000007637)	CHEK2 (ENSHGLG00000011056)	HSCB (ENSHGLG00000006538)	CCDC117 (ENSHGLG00000041095)
Naked mole-rat female	MODERN SPECIES	19	ENSHGLG00000008881 #8	ENSHGLG00000007567 #9	UBAP1L (ENSHGLG00000005478) #10	PDCD7 (ENSHGLG00000005335) #11	CLPX (ENSHGLG00000008735) #12	CILP (ENSHGLG00000011932) #13	PARP16 (ENSHGLG00000010657) #14	IGDCC3 (ENSHGLG00000006674) #15	IGDCC4 (ENSHGLG00000017462) #16	DPP8 (ENSHGLG00000014997) #17	HACD3 (ENSHGLG00000011870) #18	INTS14 (ENSHGLG00000010722) #19	SLC24A1 (ENSHGLG00000008872) #20	DENND4A (ENSHGLG00000009810) #21	ENSHGLG00000044288	RAB11A (ENSHGLG00000048551) #22	MEGF11 (ENSHGLG00000011012) #23	ENSHGLG00000007770 #24	ENSHGLG00000005971 #25	ENSHGLG00000048822	ENSHGLG00000010036 #26	ENSHGLG00000040904 #27	ENSHGLG00000008054 #28	ZWILCH (ENSHGLG00000016059) #29	LCTL (ENSHGLG00000015669) #30	SMAD6 (ENSHGLG00000008453) #31	SMAD3 (ENSHGLG00000048787) #32	AAGAB (ENSHGLG00000038898) #33	ENSHGLG00000026352 #34	C15orf61 (ENSHGLG00000038870) #35	MAP2K5 (ENSHGLG00000006627) #36
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Eurasian red squirrel	MODERN SPECIES	11	KBTBD13 (ENSSVLG00005022826) #9	UBAP1L (ENSSVLG00005022843) #10	PDCD7 (ENSSVLG00005022889) #11	CLPX (ENSSVLG00005022929) #12	CILP (ENSSVLG00005022969) #13	PARP16 (ENSSVLG00005023083) #14	ENSSVLG00005023161	IGDCC3 (ENSSVLG00005023208) #15	IGDCC4 (ENSSVLG00005023281) #16	DPP8 (ENSSVLG00005023347) #17	ENSSVLG00005023642	HACD3 (ENSSVLG00005023708) #18	INTS14 (ENSSVLG00005023820) #19	SLC24A1 (ENSSVLG00005023979) #20	DENND4A (ENSSVLG00005024160) #21	RAB11A (ENSSVLG00005024246) #22	MEGF11 (ENSSVLG00005024351) #23	DIS3L (ENSSVLG00005024622) #24	TIPIN (ENSSVLG00005024668) #25	MAP2K1 (ENSSVLG00005024707) #26	SNAPC5 (ENSSVLG00005024729) #27	ENSSVLG00005024744 #28	ZWILCH (ENSSVLG00005024833) #29	LCTL (ENSSVLG00005024912) #30	SMAD6 (ENSSVLG00005024946) #31	ENSSVLG00005024968	SMAD3 (ENSSVLG00005024991) #32	AAGAB (ENSSVLG00005025018) #33	IQCH (ENSSVLG00005025085) #34	C15orf61 (ENSSVLG00005006592) #35	MAP2K5 (ENSSVLG00005006656) #36
Marmotini	ANCESTRAL SPECIES	9	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Alpin marmot	MODERN SPECIES	7	ENSMMMG00000007278 #7	RASL12 (ENSMMMG00000007263) #8	KBTBD13 (ENSMMMG00000007256) #9	UBAP1L (ENSMMMG00000007244) #10	CLPX (ENSMMMG00000007193) #12	CILP (ENSMMMG00000007122) #13	PARP16 (ENSMMMG00000007101) #14	IGDCC3 (ENSMMMG00000007025) #15	IGDCC4 (ENSMMMG00000006948) #16	DPP8 (ENSMMMG00000006899) #17	HACD3 (ENSMMMG00000006884) #18	INTS14 (ENSMMMG00000006868) #19	SLC24A1 (ENSMMMG00000006817) #20	DENND4A (ENSMMMG00000006769) #21	ENSMMMG00000006762	RAB11A (ENSMMMG00000006747) #22	MEGF11 (ENSMMMG00000006311) #23	DIS3L (ENSMMMG00000006220) #24	TIPIN (ENSMMMG00000006196) #25	MAP2K1 (ENSMMMG00000006173) #26	SNAPC5 (ENSMMMG00000006163) #27	RPL4 (ENSMMMG00000006109) #28	ENSMMMG00000006104	ZWILCH (ENSMMMG00000006077) #29	LCTL (ENSMMMG00000006061) #30	SMAD6 (ENSMMMG00000006032) #31	ENSMMMG00000006027	SMAD3 (ENSMMMG00000005977) #32	AAGAB (ENSMMMG00000005970) #33	IQCH (ENSMMMG00000005869) #34	ENSMMMG00000005844
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Squirrel	MODERN SPECIES	71	RASL12 (ENSSTOG00000024973) #8	KBTBD13 (ENSSTOG00000010131) #9	UBAP1L (ENSSTOG00000019679) #10	PDCD7 (ENSSTOG00000003742) #11	CLPX (ENSSTOG00000003763) #12	CILP (ENSSTOG00000026112) #13	PARP16 (ENSSTOG00000008979) #14	IGDCC3 (ENSSTOG00000023391) #15	IGDCC4 (ENSSTOG00000002189) #16	DPP8 (ENSSTOG00000002203) #17	ENSSTOG00000025872	HACD3 (ENSSTOG00000002211) #18	INTS14 (ENSSTOG00000002217) #19	SLC24A1 (ENSSTOG00000002228) #20	DENND4A (ENSSTOG00000026966) #21	RAB11A (ENSSTOG00000015255) #22	MEGF11 (ENSSTOG00000015258) #23	DIS3L (ENSSTOG00000009158) #24	TIPIN (ENSSTOG00000009182) #25	MAP2K1 (ENSSTOG00000009190) #26	SNAPC5 (ENSSTOG00000009201) #27	RPL4 (ENSSTOG00000009221) #28	ZWILCH (ENSSTOG00000009607) #29	LCTL (ENSSTOG00000028073) #30	SMAD6 (ENSSTOG00000000696) #31	SMAD3 (ENSSTOG00000010286) #32	AAGAB (ENSSTOG00000010291) #33	IQCH (ENSSTOG00000010299) #34	C15orf61 (ENSSTOG00000010312) #35	MAP2K5 (ENSSTOG00000010318) #36	SKOR1 (ENSSTOG00000002675) #37
Arctic ground squirrel	MODERN SPECIES	33	SLC51B (ENSUPAG00010000624) #7	RASL12 (ENSUPAG00010000634) #8	KBTBD13 (ENSUPAG00010000664) #9	UBAP1L (ENSUPAG00010000672) #10	PDCD7 (ENSUPAG00010000682) #11	CLPX (ENSUPAG00010000698) #12	CILP (ENSUPAG00010000774) #13	PARP16 (ENSUPAG00010000785) #14	IGDCC3 (ENSUPAG00010000811) #15	IGDCC4 (ENSUPAG00010000872) #16	DPP8 (ENSUPAG00010000912) #17	HACD3 (ENSUPAG00010001090) #18	INTS14 (ENSUPAG00010001105) #19	SLC24A1 (ENSUPAG00010001132) #20	DENND4A (ENSUPAG00010001204) #21	RAB11A (ENSUPAG00010001338) #22	MEGF11 (ENSUPAG00010001370) #23	DIS3L (ENSUPAG00010001911) #24
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Kangaroo rat	MODERN SPECIES	330	Mtfmt (ENSDORG00000004684)	Slc51b (ENSDORG00000023591) #7	Rasl12 (ENSDORG00000000119) #8	Kbtbd13 (ENSDORG00000024320) #9	Ubap1l (ENSDORG00000024217) #10	Pdcd7 (ENSDORG00000008214) #11	Clpx (ENSDORG00000016116) #12	Cilp (ENSDORG00000014410) #13	Parp16 (ENSDORG00000028265) #14	Igdcc4 (ENSDORG00000015148) #16	Dpp8 (ENSDORG00000009050) #17	Hacd3 (ENSDORG00000009307) #18	Ints14 (ENSDORG00000009309) #19	Slc24a1 (ENSDORG00000007185) #20	Dennd4a (ENSDORG00000002146) #21	ENSDORG00000028034 #22	ENSDORG00000026125	Megf11 (ENSDORG00000001008) #23	Dis3l (ENSDORG00000014909) #24	Tipin (ENSDORG00000028988) #25	Map2k1 (ENSDORG00000001301) #26	Snapc5 (ENSDORG00000030051) #27	Rpl4 (ENSDORG00000016287) #28	Zwilch (ENSDORG00000016288) #29	Lctl (ENSDORG00000016291) #30	Smad6 (ENSDORG00000028234) #31	ENSDORG00000026894	Smad3 (ENSDORG00000029949) #32	ENSDORG00000026611 #33	Iqch (ENSDORG00000006468) #34	2300009A05Rik (ENSDORG00000028687) #35
Myomorpha	ANCESTRAL SPECIES	25	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	45	Pcsk1 (ENSJJAG00000014871)	Erap1 (ENSJJAG00000010373)	Lnpep (ENSJJAG00000012174)	Lix1 (ENSJJAG00000023046)	Ghrl (ENSJJAG00000020141)	Sec13 (ENSJJAG00000023600)	Atp2b2 (ENSJJAG00000009628)	Slc6a11 (ENSJJAG00000008690)	Slc6a1 (ENSJJAG00000013717)	Hrh1 (ENSJJAG00000012905)	Atg7 (ENSJJAG00000021264)	Vgll4 (ENSJJAG00000017532)	Tamm41 (ENSJJAG00000015841)	Timp4 (ENSJJAG00000015654)	ENSJJAG00000015072	ENSJJAG00000012036 #22	Pparg (ENSJJAG00000023734)	ENSJJAG00000002861	ENSJJAG00000015646	Mkrn2os (ENSJJAG00000022652)	Mkrn2 (ENSJJAG00000019765)	ENSJJAG00000016961	Tmem40 (ENSJJAG00000009444)	Cand2 (ENSJJAG00000018247)	ENSJJAG00000021233	ENSJJAG00000016695	Ift122 (ENSJJAG00000020288)	Rho (ENSJJAG00000022285)	ENSJJAG00000014828	Plxnd1 (ENSJJAG00000014069)	ENSJJAG00000020659
Lesser Egyptian jerboa	MODERN SPECIES	92	Slc51b (ENSJJAG00000017452) #7	Rasl12 (ENSJJAG00000019387) #8	ENSJJAG00000011177 #9	ENSJJAG00000016922 #10	Pdcd7 (ENSJJAG00000012031) #11	Clpx (ENSJJAG00000012714) #12	Cilp (ENSJJAG00000012559) #13	Parp16 (ENSJJAG00000019303) #14	Igdcc3 (ENSJJAG00000010487) #15	Igdcc4 (ENSJJAG00000022092) #16	Dpp8 (ENSJJAG00000018252) #17	Hacd3 (ENSJJAG00000016608) #18	Ints14 (ENSJJAG00000005359) #19	Slc24a1 (ENSJJAG00000009344) #20	ENSJJAG00000012113 #21	ENSJJAG00000015445 #22	Megf11 (ENSJJAG00000023890) #23	ENSJJAG00000019234	Dis3l (ENSJJAG00000016147) #24	Tipin (ENSJJAG00000017947) #25	Map2k1 (ENSJJAG00000021452) #26	Snapc5 (ENSJJAG00000022013) #27	ENSJJAG00000013677 #28	Zwilch (ENSJJAG00000010189) #29	Lctl (ENSJJAG00000013579) #30	Smad6 (ENSJJAG00000019623) #31	Smad3 (ENSJJAG00000021414) #32	ENSJJAG00000018312 #33	Iqch (ENSJJAG00000024416) #34	2300009A05Rik (ENSJJAG00000019436) #35	Map2k5 (ENSJJAG00000024208) #36
Lesser Egyptian jerboa	MODERN SPECIES	96	Arhgef38 (ENSJJAG00000014797)	ENSJJAG00000015299	Gstcd (ENSJJAG00000021904)	Npnt (ENSJJAG00000007539)	ENSJJAG00000014460	Aimp1 (ENSJJAG00000016873)	Gimd1 (ENSJJAG00000017692)	Lrp12 (ENSJJAG00000020477)	Dpys (ENSJJAG00000008928)	Dcstamp (ENSJJAG00000011201)	Rims2 (ENSJJAG00000013990)	ENSJJAG00000000607	ENSJJAG00000001990	Slc25a32 (ENSJJAG00000001066)	ENSJJAG00000007630	ENSJJAG00000009949 #22	Fzd6 (ENSJJAG00000012386)	Baalc (ENSJJAG00000016925)	Atp6v1c1 (ENSJJAG00000016526)	Azin1 (ENSJJAG00000020420)	Klf10 (ENSJJAG00000002095)	Odf1 (ENSJJAG00000004566)	Ubr5 (ENSJJAG00000013619)	Rrm2b (ENSJJAG00000015803)	Ncald (ENSJJAG00000017643)	Grhl2 (ENSJJAG00000021484)	Zfp706 (ENSJJAG00000000146)	ENSJJAG00000002258	ENSJJAG00000010886	ENSJJAG00000015918	Snx31 (ENSJJAG00000018446)
Muroidea	ANCESTRAL SPECIES	23	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	955	Slc51b (ENSNGAG00000016122) #7	Rasl12 (ENSNGAG00000019976) #8	ENSNGAG00000011880 #9	Ubap1l (ENSNGAG00000022357) #10	Pdcd7 (ENSNGAG00000018415) #11	Clpx (ENSNGAG00000001488) #12	Cilp (ENSNGAG00000019472) #13	Parp16 (ENSNGAG00000004884) #14	Igdcc3 (ENSNGAG00000012915) #15	Igdcc4 (ENSNGAG00000022064) #16	Dpp8 (ENSNGAG00000019579) #17	Hacd3 (ENSNGAG00000016924) #18	Ints14 (ENSNGAG00000007105) #19	Slc24a1 (ENSNGAG00000010674) #20	ENSNGAG00000022619 #21	Rab11a (ENSNGAG00000013726) #22	Megf11 (ENSNGAG00000011352) #23	Dis3l (ENSNGAG00000017008) #24	Tipin (ENSNGAG00000018237) #25	Map2k1 (ENSNGAG00000006894) #26	Snapc5 (ENSNGAG00000006133) #27	ENSNGAG00000006653 #28	Zwilch (ENSNGAG00000016626) #29	Lctl (ENSNGAG00000012911) #30	Smad6 (ENSNGAG00000021223) #31	ENSNGAG00000022756	Smad3 (ENSNGAG00000023535) #32	ENSNGAG00000010708 #33	Iqch (ENSNGAG00000019505) #34	2300009A05Rik (ENSNGAG00000004715) #35	Map2k5 (ENSNGAG00000011076) #36
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145.kb #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Chinese hamster chok1gshd	MODERN SPECIES	284	Slc51b (ENSCGRG00001013856) #7	Rasl12 (ENSCGRG00001015470) #8	Kbtbd13 (ENSCGRG00001012125) #9	Ubap1l (ENSCGRG00001023243) #10	Pdcd7 (ENSCGRG00001011256) #11	Clpx (ENSCGRG00001020872) #12	Cilp (ENSCGRG00001023319) #13	Parp16 (ENSCGRG00001011381) #14	Igdcc3 (ENSCGRG00001015803) #15	Igdcc4 (ENSCGRG00001004819) #16	Dpp8 (ENSCGRG00001024771) #17	Hacd3 (ENSCGRG00001019214) #18	Ints14 (ENSCGRG00001022061) #19	Slc24a1 (ENSCGRG00001023812) #20	Dennd4a (ENSCGRG00001019979) #21	Rab11a (ENSCGRG00001023313) #22	Megf11 (ENSCGRG00001019210) #23	Dis3l (ENSCGRG00001017825) #24	Tipin (ENSCGRG00001018146) #25	Snapc5 (ENSCGRG00001013968) #27	Zwilch (ENSCGRG00001018206) #29	Lctl (ENSCGRG00001017716) #30	Smad6 (ENSCGRG00001002733) #31	Smad3 (ENSCGRG00001013999) #32	Aagab (ENSCGRG00001020082) #33	Iqch (ENSCGRG00001006084) #34	ENSCGRG00001000811	2300009A05Rik (ENSCGRG00001009275) #35	Map2k5 (ENSCGRG00001024707) #36	Skor1 (ENSCGRG00001000300) #37	Pias1 (ENSCGRG00001018818)
Golden Hamster	MODERN SPECIES	672	Rasl12 (ENSMAUG00000021367) #8	Kbtbd13 (ENSMAUG00000007549) #9	Ubap1l (ENSMAUG00000019477) #10	Pdcd7 (ENSMAUG00000010175) #11	Clpx (ENSMAUG00000018798) #12	ENSMAUG00000009833	Cilp (ENSMAUG00000019346) #13	Parp16 (ENSMAUG00000014432) #14	Igdcc3 (ENSMAUG00000019761) #15	Igdcc4 (ENSMAUG00000021589) #16	Dpp8 (ENSMAUG00000020059) #17	Hacd3 (ENSMAUG00000004278) #18	Ints14 (ENSMAUG00000020937) #19	Slc24a1 (ENSMAUG00000012813) #20	Dennd4a (ENSMAUG00000018527) #21	Rab11a (ENSMAUG00000018551) #22	Megf11 (ENSMAUG00000003129) #23	Dis3l (ENSMAUG00000008265) #24	Tipin (ENSMAUG00000012421) #25	Map2k1 (ENSMAUG00000011379) #26	Snapc5 (ENSMAUG00000008645) #27	Rpl4 (ENSMAUG00000018867) #28	Zwilch (ENSMAUG00000021210) #29	Lctl (ENSMAUG00000009957) #30	Smad6 (ENSMAUG00000009859) #31	Smad3 (ENSMAUG00000022258) #32	Aagab (ENSMAUG00000005383) #33	Iqch (ENSMAUG00000004333) #34	Map2k5 (ENSMAUG00000015370) #36	Skor1 (ENSMAUG00000020780) #37	Pias1 (ENSMAUG00000000785)
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Prairie vole	MODERN SPECIES	13	Slc51b (ENSMOCG00000016544) #7	Rasl12 (ENSMOCG00000022051) #8	Kbtbd13 (ENSMOCG00000001263) #9	Ubap1l (ENSMOCG00000021453) #10	Pdcd7 (ENSMOCG00000007159) #11	Clpx (ENSMOCG00000011980) #12	Cilp (ENSMOCG00000022194) #13	Parp16 (ENSMOCG00000014635) #14	Igdcc3 (ENSMOCG00000017628) #15	Igdcc4 (ENSMOCG00000017733) #16	Dpp8 (ENSMOCG00000018103) #17	Hacd3 (ENSMOCG00000004995) #18	Ints14 (ENSMOCG00000020364) #19	Slc24a1 (ENSMOCG00000002968) #20	Dennd4a (ENSMOCG00000008521) #21	Rab11a (ENSMOCG00000021138) #22	Megf11 (ENSMOCG00000003573) #23	Dis3l (ENSMOCG00000005278) #24	Tipin (ENSMOCG00000010343) #25	Map2k1 (ENSMOCG00000013072) #26	Snapc5 (ENSMOCG00000015348) #27	ENSMOCG00000021901 #28	Zwilch (ENSMOCG00000017159) #29	Lctl (ENSMOCG00000004744) #30	Smad6 (ENSMOCG00000014458) #31	Smad3 (ENSMOCG00000018490) #32	Aagab (ENSMOCG00000021340) #33	Iqch (ENSMOCG00000016873) #34	2300009A05Rik (ENSMOCG00000013991) #35	Map2k5 (ENSMOCG00000022058) #36	Skor1 (ENSMOCG00000018261) #37
Northern American deer mouse	DUPLICATION
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	20	Slc51b (ENSPEMG00000030201) #7	Rasl12 (ENSPEMG00000026265) #8	Kbtbd13 (ENSPEMG00000005949) #9	Ubap1l (ENSPEMG00000017986) #10	Pdcd7 (ENSPEMG00000001830) #11	Clpx (ENSPEMG00000021528) #12	Cilp (ENSPEMG00000021273) #13	Parp16 (ENSPEMG00000022071) #14	Igdcc3 (ENSPEMG00000021097) #15	Igdcc4 (ENSPEMG00000020857) #16	Dpp8 (ENSPEMG00000024195) #17	Hacd3 (ENSPEMG00000008076) #18	Ints14 (ENSPEMG00000008550) #19	Slc24a1 (ENSPEMG00000022814) #20	Dennd4a (ENSPEMG00000022452) #21	ENSPEMG00000021125 #22	Megf11 (ENSPEMG00000017797) #23	Dis3l (ENSPEMG00000001213) #24	Tipin (ENSPEMG00000002370) #25	Map2k1 (ENSPEMG00000007282) #26	Snapc5 (ENSPEMG00000007852) #27	Rpl4 (ENSPEMG00000012064) #28	Zwilch (ENSPEMG00000014485) #29	Lctl (ENSPEMG00000016229) #30	Smad6 (ENSPEMG00000017040) #31	Smad3 (ENSPEMG00000028676) #32	Aagab (ENSPEMG00000018465) #33	ENSPEMG00000028831	Iqch (ENSPEMG00000005753) #34	2300009A05Rik (ENSPEMG00000009306) #35	Map2k5 (ENSPEMG00000010361) #36
Northern American deer mouse	MODERN SPECIES	7	Plekhg1 (ENSPEMG00000003381)	Mthfd1l (ENSPEMG00000012428)	ENSPEMG00000028722	Zbtb2 (ENSPEMG00000028248)	Rmnd1 (ENSPEMG00000014544)	Armt1 (ENSPEMG00000027664)	Ccdc170 (ENSPEMG00000018858)	ENSPEMG00000028412	Esr1 (ENSPEMG00000012747)	ENSPEMG00000000704	ENSPEMG00000029017	ENSPEMG00000013933	ENSPEMG00000007014	Myct1 (ENSPEMG00000016041)	Vip (ENSPEMG00000007974)	ENSPEMG00000005147 #22	Fbxo5 (ENSPEMG00000017534)	Mtrf1l (ENSPEMG00000018112)	Rgs17 (ENSPEMG00000002088)	Oprm1 (ENSPEMG00000013691)	Ipcef1 (ENSPEMG00000017460)	Cnksr3 (ENSPEMG00000009492)	Scaf8 (ENSPEMG00000010531)	Tiam2 (ENSPEMG00000019186)	Tfb1m (ENSPEMG00000010410)	ENSPEMG00000030418	Nox3 (ENSPEMG00000010502)	ENSPEMG00000014483	Arid1b (ENSPEMG00000008950)	Tmem242 (ENSPEMG00000016796)	Zdhhc14 (ENSPEMG00000019121)
Northern American deer mouse	MODERN SPECIES	21	Garin3 (ENSPEMG00000007819)	Itk (ENSPEMG00000014168)	Fndc9 (ENSPEMG00000030039)	Cyfip2 (ENSPEMG00000013244)	Nipal4 (ENSPEMG00000030993)	Adam19 (ENSPEMG00000011893)	Sox30 (ENSPEMG00000000554)	Thg1l (ENSPEMG00000022707)	Lsm11 (ENSPEMG00000028614)	Clint1 (ENSPEMG00000022779)	Ebf1 (ENSPEMG00000022652)	Rnf145 (ENSPEMG00000016589)	ENSPEMG00000028711	Ublcp1 (ENSPEMG00000014160)	Il12b (ENSPEMG00000015420)	ENSPEMG00000018217 #22	ENSPEMG00000012981	Adra1b (ENSPEMG00000018698)	Ttc1 (ENSPEMG00000018843)	Pwwp2a (ENSPEMG00000000774)	Fabp6 (ENSPEMG00000004485)	Ccnjl (ENSPEMG00000007234)	C1qtnf2 (ENSPEMG00000008301)	Slu7 (ENSPEMG00000016646)	ENSPEMG00000007013	Atp10b (ENSPEMG00000014226)	ENSPEMG00000029937	ENSPEMG00000029792	Gabrb2 (ENSPEMG00000017451)	Gabra6 (ENSPEMG00000000050)	ENSPEMG00000027790
Murinae	ANCESTRAL SPECIES	3	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Mus	ANCESTRAL SPECIES	4	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36	ENSGT00940000158440 #37
Ryukyu mouse	MODERN SPECIES	18	Slc51b (MGP_CAROLIEiJ_G0032361) #7	Rasl12 (MGP_CAROLIEiJ_G0032360) #8	Kbtbd13 (MGP_CAROLIEiJ_G0032359) #9	Ubap1l (MGP_CAROLIEiJ_G0032358) #10	Pdcd7 (MGP_CAROLIEiJ_G0032357) #11	Clpx (MGP_CAROLIEiJ_G0032356) #12	MGP_CAROLIEiJ_G0032355	Parp16 (MGP_CAROLIEiJ_G0032354) #14	Igdcc3 (MGP_CAROLIEiJ_G0032353) #15	Igdcc4 (MGP_CAROLIEiJ_G0032352) #16	Dpp8 (MGP_CAROLIEiJ_G0032351) #17	Hacd3 (MGP_CAROLIEiJ_G0032350) #18	Ints14 (MGP_CAROLIEiJ_G0032349) #19	Slc24a1 (MGP_CAROLIEiJ_G0032348) #20	Dennd4a (MGP_CAROLIEiJ_G0032347) #21	Rab11a (MGP_CAROLIEiJ_G0032346) #22	Megf11 (MGP_CAROLIEiJ_G0032345) #23	Dis3l (MGP_CAROLIEiJ_G0032344) #24	Tipin (MGP_CAROLIEiJ_G0032343) #25	MGP_CAROLIEiJ_G0032342	Map2k1 (MGP_CAROLIEiJ_G0032341) #26	Snapc5 (MGP_CAROLIEiJ_G0032340) #27	Rpl4 (MGP_CAROLIEiJ_G0032339) #28	Zwilch (MGP_CAROLIEiJ_G0032338) #29	Lctl (MGP_CAROLIEiJ_G0032337) #30	Smad6 (MGP_CAROLIEiJ_G0032336) #31	Smad3 (MGP_CAROLIEiJ_G0032335) #32	Aagab (MGP_CAROLIEiJ_G0032334) #33	Iqch (MGP_CAROLIEiJ_G0032333) #34	2300009A05Rik (MGP_CAROLIEiJ_G0032332) #35	Map2k5 (MGP_CAROLIEiJ_G0032331) #36
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36
Mouse	MODERN SPECIES	18	Slc51b (ENSMUSG00000053862) #7	Rasl12 (ENSMUSG00000041696) #8	Kbtbd13 (ENSMUSG00000054978) #9	Ubap1l (ENSMUSG00000086228) #10	Pdcd7 (ENSMUSG00000041837) #11	Clpx (ENSMUSG00000015357) #12	Cilp (ENSMUSG00000042254) #13	Parp16 (ENSMUSG00000032392) #14	Igdcc3 (ENSMUSG00000032394) #15	Igdcc4 (ENSMUSG00000032816) #16	Dpp8 (ENSMUSG00000032393) #17	Hacd3 (ENSMUSG00000033629) #18	Ints14 (ENSMUSG00000034263) #19	Slc24a1 (ENSMUSG00000034452) #20	Dennd4a (ENSMUSG00000053641) #21	Rab11a (ENSMUSG00000004771) #22	Megf11 (ENSMUSG00000036466) #23	Dis3l (ENSMUSG00000032396) #24	Tipin (ENSMUSG00000032397) #25	Uchl4 (ENSMUSG00000035337)	Map2k1 (ENSMUSG00000004936) #26	Snapc5 (ENSMUSG00000032398) #27	Rpl4 (ENSMUSG00000032399) #28	Zwilch (ENSMUSG00000032400) #29	Lctl (ENSMUSG00000032401) #30	Smad6 (ENSMUSG00000036867) #31	Smad3 (ENSMUSG00000032402) #32	Aagab (ENSMUSG00000037257) #33	Iqch (ENSMUSG00000037801) #34	2300009A05Rik (ENSMUSG00000032403) #35	Map2k5 (ENSMUSG00000058444) #36
Mus_C	ANCESTRAL SPECIES	8	ENSGT00390000010409 #7	ENSGT00940000160167 #8	ENSGT00940000161629 #9	ENSGT00390000008092.b #10	ENSGT00390000017392 #11	ENSGT00390000017625 #12	ENSGT00390000008152.B.b #13	ENSGT00950000183129.a #14	ENSGT00940000156969 #15	ENSGT00940000159637 #16	ENSGT00940000160717 #17	ENSGT00530000062962.b.a #18	ENSGT00390000009486 #19	ENSGT01030000234532.B.e.b #20	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #23	ENSGT00530000063106.B #24	ENSGT00390000005764 #25	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #26	ENSGT00390000010331 #27	ENSGT00390000018145 #28	ENSGT00390000013696 #29	ENSGT00940000157369 #30	ENSGT00940000158146 #31	ENSGT00940000153499.b.b #32	ENSGT00390000007218 #33	ENSGT00390000008908 #34	ENSGT00390000015942 #35	ENSGT00940000157505 #36
Steppe mouse	MODERN SPECIES	3365	Kbtbd13 (ENSMSIG00000005647) #9	ENSMSIG00000005605 #10	Pdcd7 (ENSMSIG00000005596) #11	ENSMSIG00000005574	ENSMSIG00000005568	Clpx (ENSMSIG00000005427) #12	Cilp (ENSMSIG00000005391) #13	Parp16 (ENSMSIG00000005362) #14	Igdcc3 (ENSMSIG00000005288) #15	Igdcc4 (ENSMSIG00000005197) #16	Dpp8 (ENSMSIG00000005153) #17	Hacd3 (ENSMSIG00000005101) #18	Ints14 (ENSMSIG00000005077) #19	Slc24a1 (ENSMSIG00000005039) #20	Dennd4a (ENSMSIG00000004975) #21	Rab11a (ENSMSIG00000004938) #22	Megf11 (ENSMSIG00000004481) #23	Dis3l (ENSMSIG00000004353) #24	Tipin (ENSMSIG00000004296) #25	Uchl4 (ENSMSIG00000004289)	Map2k1 (ENSMSIG00000004246) #26	Snapc5 (ENSMSIG00000004231) #27	Rpl4 (ENSMSIG00000004124) #28	Zwilch (ENSMSIG00000003872) #29	Lctl (ENSMSIG00000003776) #30	ENSMSIG00000003769	ENSMSIG00000003749	Smad6 (ENSMSIG00000003718) #31	ENSMSIG00000003710	Smad3 (ENSMSIG00000003679) #32	Aagab (ENSMSIG00000003642) #33
spretus	MODERN SPECIES	18	Slc51b (MGP_SPRETEiJ_G0033500) #7	Rasl12 (MGP_SPRETEiJ_G0033499) #8	Kbtbd13 (MGP_SPRETEiJ_G0033498) #9	Ubap1l (MGP_SPRETEiJ_G0033497) #10	Pdcd7 (MGP_SPRETEiJ_G0033496) #11	Clpx (MGP_SPRETEiJ_G0033495) #12	Cilp (MGP_SPRETEiJ_G0033494) #13	Parp16 (MGP_SPRETEiJ_G0033493) #14	Igdcc3 (MGP_SPRETEiJ_G0033492) #15	Igdcc4 (MGP_SPRETEiJ_G0033491) #16	Dpp8 (MGP_SPRETEiJ_G0033490) #17	Hacd3 (MGP_SPRETEiJ_G0033489) #18	Ints14 (MGP_SPRETEiJ_G0033488) #19	Slc24a1 (MGP_SPRETEiJ_G0033487) #20	Dennd4a (MGP_SPRETEiJ_G0033486) #21	Rab11a (MGP_SPRETEiJ_G0033485) #22	Megf11 (MGP_SPRETEiJ_G0033484) #23	Dis3l (MGP_SPRETEiJ_G0033483) #24	Tipin (MGP_SPRETEiJ_G0033482) #25	MGP_SPRETEiJ_G0033481	Map2k1 (MGP_SPRETEiJ_G0033480) #26	Snapc5 (MGP_SPRETEiJ_G0033479) #27	Rpl4 (MGP_SPRETEiJ_G0033478) #28	Zwilch (MGP_SPRETEiJ_G0033477) #29	Lctl (MGP_SPRETEiJ_G0033476) #30	Smad6 (MGP_SPRETEiJ_G0033475) #31	Smad3 (MGP_SPRETEiJ_G0033474) #32	Aagab (MGP_SPRETEiJ_G0033473) #33	Iqch (MGP_SPRETEiJ_G0033472) #34	2300009A05Rik (MGP_SPRETEiJ_G0033471) #35	Map2k5 (MGP_SPRETEiJ_G0033470) #36
Shrew mouse	MODERN SPECIES	1	Slc51b (MGP_PahariEiJ_G0015226) #7	Rasl12 (MGP_PahariEiJ_G0015225) #8	Kbtbd13 (MGP_PahariEiJ_G0015224) #9	Ubap1l (MGP_PahariEiJ_G0015223) #10	Pdcd7 (MGP_PahariEiJ_G0015222) #11	Clpx (MGP_PahariEiJ_G0015221) #12	MGP_PahariEiJ_G0015220	Parp16 (MGP_PahariEiJ_G0015219) #14	MGP_PahariEiJ_G0015218 #15	Igdcc4 (MGP_PahariEiJ_G0015217) #16	Dpp8 (MGP_PahariEiJ_G0015216) #17	Hacd3 (MGP_PahariEiJ_G0015215) #18	Ints14 (MGP_PahariEiJ_G0015214) #19	Slc24a1 (MGP_PahariEiJ_G0015213) #20	Dennd4a (MGP_PahariEiJ_G0015212) #21	Rab11a (MGP_PahariEiJ_G0015211) #22	Megf11 (MGP_PahariEiJ_G0015210) #23	Dis3l (MGP_PahariEiJ_G0015209) #24	Tipin (MGP_PahariEiJ_G0015208) #25	Map2k1 (MGP_PahariEiJ_G0015207) #26	Snapc5 (MGP_PahariEiJ_G0015206) #27	Rpl4 (MGP_PahariEiJ_G0015205) #28	Zwilch (MGP_PahariEiJ_G0015204) #29	Smad6 (MGP_PahariEiJ_G0015202) #31	Smad3 (MGP_PahariEiJ_G0015201) #32	Aagab (MGP_PahariEiJ_G0015200) #33	Iqch (MGP_PahariEiJ_G0015199) #34	2300009A05Rik (MGP_PahariEiJ_G0015198) #35	Map2k5 (MGP_PahariEiJ_G0015197) #36	Skor1 (MGP_PahariEiJ_G0015196) #37	Pias1 (MGP_PahariEiJ_G0015195)
Rat	DUPLICATION
Rat	MODERN SPECIES	18	AABR07070456.1 (ENSRNOG00000014383) #9	Ubap1l (ENSRNOG00000050979) #10	Pdcd7 (ENSRNOG00000014340) #11	Clpx (ENSRNOG00000030225) #12	Cilp (ENSRNOG00000029911) #13	Parp16 (ENSRNOG00000029127) #14	ENSRNOG00000063066	Igdcc3 (ENSRNOG00000030800) #15	Igdcc4 (ENSRNOG00000033496) #16	Dpp8 (ENSRNOG00000019105) #17	Hacd3 (ENSRNOG00000030232) #18	Ints14 (ENSRNOG00000012469) #19	Slc24a1 (ENSRNOG00000052051) #20	Dennd4a (ENSRNOG00000011739) #21	LOC120094392 (ENSRNOG00000071140)	Rab11a (ENSRNOG00000011302) #22	Megf11 (ENSRNOG00000010634) #23	Dis3l (ENSRNOG00000010537) #24	Tipin (ENSRNOG00000043068) #25	Map2k1 (ENSRNOG00000010176) #26	Rpl4 (ENSRNOG00000009378) #28	Zwilch (ENSRNOG00000009303) #29	Lctl (ENSRNOG00000009193) #30	Smad6 (ENSRNOG00000009173) #31	Smad3 (ENSRNOG00000008620) #32	Aagab (ENSRNOG00000008424) #33	Iqch (ENSRNOG00000008353) #34	C8h15orf61 (ENSRNOG00000008340) #35	AC132740.1 (ENSRNOG00000054780)	Map2k5 (ENSRNOG00000007926) #36	Skor1 (ENSRNOG00000013959) #37
Rat	MODERN SPECIES	1	Krt13 (ENSRNOG00000014070)	Krt36 (ENSRNOG00000031805)	Krt35 (ENSRNOG00000013754)	Krt32 (ENSRNOG00000013611)	Krt31 (ENSRNOG00000030344)	Krt34 (ENSRNOG00000051302)	Krt33b (ENSRNOG00000068212)	Krt33a (ENSRNOG00000062912)	Krtap17-1 (ENSRNOG00000042473)	Krtap16-1 (ENSRNOG00000070593)	Krtap29-1 (ENSRNOG00000067188)	LOC100364862 (ENSRNOG00000063867)	Krtap31-1 (ENSRNOG00000036838)	Krtap31-2 (ENSRNOG00000042736)	LOC680428 (ENSRNOG00000042701)	ENSRNOG00000066770 #22	LOC100910814 (ENSRNOG00000064993)	Krtap9-7 (ENSRNOG00000026803)	Krtap4-3 (ENSRNOG00000034110)	LOC100909494 (ENSRNOG00000065268)	AABR07030464.1 (ENSRNOG00000012973)	AC099183.3 (ENSRNOG00000058172)	Gm11555 (ENSRNOG00000066540)	ENSRNOG00000068861	Krtap2-4 (ENSRNOG00000061130)	Krtap2-4l (ENSRNOG00000060847)	Krtap2-1 (ENSRNOG00000065269)	RGD1561684 (ENSRNOG00000063772)	LOC100365588 (ENSRNOG00000053283)	Krtap1-3 (ENSRNOG00000052388)	Krtap1-1 (ENSRNOG00000012955)