Gnathostomata	ANCESTRAL SPECIES	196												ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000165890	ENSGT00390000010331 #28
Euteleostomi	ANCESTRAL SPECIES	6	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00510000052431	ENSGT00390000017828	ENSGT00390000018225.A	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440	ENSGT01030000234539.a.a.b.a.b
Sarcopterygii	ANCESTRAL SPECIES	9	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00510000052431	ENSGT00390000017828	ENSGT00390000018225.A	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440	ENSGT01030000234539.a.a.b.a.b
Tetrapoda	ANCESTRAL SPECIES	11	ENSGT00940000161629	ENSGT00940000160167	ENSGT00510000052431	ENSGT00390000017828	ENSGT00390000018225.A	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440	ENSGT01030000234539.a.a.b.a.b
Amniota	ANCESTRAL SPECIES	15	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00510000052431	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Mammalia	ANCESTRAL SPECIES	28	ENSGT00390000017625 #9	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Theria	ANCESTRAL SPECIES	22	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Eutheria	ANCESTRAL SPECIES	8	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35
Primates	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Mouse lemur	MODERN SPECIES	22	UBAP1L (ENSMICG00000034396) #7	PDCD7 (ENSMICG00000034171) #8	CLPX (ENSMICG00000014970) #9	CILP (ENSMICG00000015198) #10	PARP16 (ENSMICG00000004993) #11	IGDCC3 (ENSMICG00000003513) #12	IGDCC4 (ENSMICG00000046639) #13	DPP8 (ENSMICG00000000049) #14	HACD3 (ENSMICG00000003985) #15	INTS14 (ENSMICG00000003990) #16	SLC24A1 (ENSMICG00000003996) #17	ENSMICG00000034025 #18	ENSMICG00000028970 #19	ENSMICG00000044235 #20	DENND4A (ENSMICG00000004000) #21	RAB11A (ENSMICG00000041504) #22	ENSMICG00000035335 #23	MEGF11 (ENSMICG00000004354) #24	DIS3L (ENSMICG00000004374) #25	TIPIN (ENSMICG00000004386) #26	MAP2K1 (ENSMICG00000004393) #27	SNAPC5 (ENSMICG00000004401) #28	RPL4 (ENSMICG00000004419) #29	ZWILCH (ENSMICG00000004429) #30	LCTL (ENSMICG00000004455) #31	SMAD6 (ENSMICG00000035205) #32	SMAD3 (ENSMICG00000006119) #33	AAGAB (ENSMICG00000044554) #34	IQCH (ENSMICG00000006127) #35	ENSMICG00000041604 #36	ENSMICG00000005597 #37
Lemuriformes_a	ANCESTRAL SPECIES	1	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00940000170330	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890
Greater bamboo lemur	MODERN SPECIES	105	APH1B (ENSPSMG00000004224)	RAB8B (ENSPSMG00000004246)	ENSPSMG00000004263	LACTB (ENSPSMG00000004273)	TPM1 (ENSPSMG00000005012)	ENSPSMG00000005970	TLN2 (ENSPSMG00000006148)	PARP16 (ENSPSMG00000006207) #11	IGDCC3 (ENSPSMG00000006222) #12	IGDCC4 (ENSPSMG00000006239) #13	DPP8 (ENSPSMG00000006379) #14	HACD3 (ENSPSMG00000006624) #15	INTS14 (ENSPSMG00000006782) #16	SLC24A1 (ENSPSMG00000006805) #17	DENND4A (ENSPSMG00000006976) #21	RAB11A (ENSPSMG00000007014) #22	MEGF11 (ENSPSMG00000007120) #24
Coquerels sifaka	DUPLICATION
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	863		CLIC2 (ENSPCOG00000012095)	RAB39B (ENSPCOG00000013225)	VBP1 (ENSPCOG00000019297)	BRCC3 (ENSPCOG00000010400)	ENSPCOG00000025743	MTCP1 (ENSPCOG00000018892)	CMC4 (ENSPCOG00000024860)	FUNDC2 (ENSPCOG00000015705)	F8 (ENSPCOG00000022504)	ENSPCOG00000001067	ENSPCOG00000025344	SMIM9 (ENSPCOG00000024173)	MPP1 (ENSPCOG00000006163)	DKC1 (ENSPCOG00000026874)	ENSPCOG00000015802 #22	GAB3 (ENSPCOG00000023755)
Coquerels sifaka	MODERN SPECIES	51																ENSPCOG00000016536 #22	ENSPCOG00000012889	SOX2 (ENSPCOG00000012108)	ATP11B (ENSPCOG00000009904)	DCUN1D1 (ENSPCOG00000026616)	MCCC1 (ENSPCOG00000020095)	ENSPCOG00000009968	MCF2L2 (ENSPCOG00000023043)	ENSPCOG00000025090	ENSPCOG00000025238	KLHL24 (ENSPCOG00000014525)	YEATS2 (ENSPCOG00000018918)	MAP6D1 (ENSPCOG00000027653)	PARL (ENSPCOG00000010637)	CYP2AB1 (ENSPCOG00000016717)	ABCC5 (ENSPCOG00000025758)
Coquerels sifaka	MODERN SPECIES	1017											ENSPCOG00000000945	ENSPCOG00000021577	FBLN2 (ENSPCOG00000020624)	ENSPCOG00000013542	WNT7A (ENSPCOG00000007560)	ENSPCOG00000015463 #22
Bushbaby	MODERN SPECIES	126	RASL12 (ENSOGAG00000010391)	KBTBD13 (ENSOGAG00000032677)	UBAP1L (ENSOGAG00000026705) #7	PDCD7 (ENSOGAG00000028484) #8	CLPX (ENSOGAG00000013626) #9	CILP (ENSOGAG00000033324) #10	PARP16 (ENSOGAG00000013641) #11	ENSOGAG00000027481	IGDCC3 (ENSOGAG00000013646) #12	IGDCC4 (ENSOGAG00000034827) #13	DPP8 (ENSOGAG00000013651) #14	HACD3 (ENSOGAG00000013661) #15	INTS14 (ENSOGAG00000013667) #16	SLC24A1 (ENSOGAG00000013674) #17	DENND4A (ENSOGAG00000013678) #21	RAB11A (ENSOGAG00000007642) #22	MEGF11 (ENSOGAG00000007644) #24	ENSOGAG00000034665	DIS3L (ENSOGAG00000024086) #25	ENSOGAG00000028488 #26	MAP2K1 (ENSOGAG00000015876) #27	SNAPC5 (ENSOGAG00000015881) #28	ENSOGAG00000015884 ##29	ZWILCH (ENSOGAG00000015886) #30	LCTL (ENSOGAG00000015893) #31	SMAD6 (ENSOGAG00000015387) #32	ENSOGAG00000034467	ENSOGAG00000029245	SMAD3 (ENSOGAG00000014217) #33	AAGAB (ENSOGAG00000014219) #34	IQCH (ENSOGAG00000014224) #35
Haplorrhini	ANCESTRAL SPECIES	17	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35
Tarsier	MODERN SPECIES	4469															ENSTSYG00000036223 #21	RAB11A (ENSTSYG00000031189) #22	MEGF11 (ENSTSYG00000030711) #24	DIS3L (ENSTSYG00000001936) #25	TIPIN (ENSTSYG00000013892) #26
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.a.a #29	ENSGT00390000013696 #30	ENSGT00910000147890	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35
Platyrrhini	ANCESTRAL SPECIES	27	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a.a #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.a.a #29	ENSGT00390000013696 #30	ENSGT00910000147890	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00910000146962
Cebidae	ANCESTRAL SPECIES	29	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00940000170330	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.a.a #29	ENSGT00390000013696 #30	ENSGT00910000147890	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00910000146962
Cebidae_a	ANCESTRAL SPECIES	39	ENSGT00390000017828	ENSGT00390000010409	ENSGT00940000160167	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.a.a #29	ENSGT00390000013696 #30	ENSGT00910000147890	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00910000146962	ENSGT00940000157505
Bolivian squirrel monkey	MODERN SPECIES	179	SLC51B (ENSSBOG00000023480)	RASL12 (ENSSBOG00000032264)	UBAP1L (ENSSBOG00000026917) #7	PDCD7 (ENSSBOG00000020378) #8	CLPX (ENSSBOG00000023525) #9	CILP (ENSSBOG00000034310) #10	PARP16 (ENSSBOG00000032698) #11	IGDCC3 (ENSSBOG00000030768) #12	IGDCC4 (ENSSBOG00000027481) #13	ENSSBOG00000019694	DPP8 (ENSSBOG00000031844) #14	HACD3 (ENSSBOG00000025352) #15	INTS14 (ENSSBOG00000033678) #16	SLC24A1 (ENSSBOG00000035560) #17	DENND4A (ENSSBOG00000021504) #21	RAB11A (ENSSBOG00000017326) #22	MEGF11 (ENSSBOG00000026335) #24
Capuchin	MODERN SPECIES	485	RASL12 (ENSCCAG00000037599)	ENSCCAG00000019927	UBAP1L (ENSCCAG00000037075) #7	PDCD7 (ENSCCAG00000026810) #8	ENSCCAG00000028918 #9	CILP (ENSCCAG00000021521) #10	PARP16 (ENSCCAG00000032095) #11	IGDCC3 (ENSCCAG00000029122) #12	IGDCC4 (ENSCCAG00000034061) #13	DPP8 (ENSCCAG00000023015) #14	HACD3 (ENSCCAG00000037841) #15	INTS14 (ENSCCAG00000030079) #16	SLC24A1 (ENSCCAG00000024899) #17	DENND4A (ENSCCAG00000036137) #21	ENSCCAG00000032078	RAB11A (ENSCCAG00000021286) #22	MEGF11 (ENSCCAG00000029113) #24	DIS3L (ENSCCAG00000037964) #25	ENSCCAG00000018227 #27
Marmoset	MODERN SPECIES	1	SLC51B (ENSCJAG00000006852)	RASL12 (ENSCJAG00000080082)	KBTBD13 (ENSCJAG00000023428)	UBAP1L (ENSCJAG00000035221) #7	PDCD7 (ENSCJAG00000045698) #8	CLPX (ENSCJAG00000006870) #9	CILP (ENSCJAG00000047691) #10	PARP16 (ENSCJAG00000006929) #11	IGDCC3 (ENSCJAG00000006940) #12	IGDCC4 (ENSCJAG00000006951) #13	DPP8 (ENSCJAG00000006987) #14	HACD3 (ENSCJAG00000007084) #15	INTS14 (ENSCJAG00000007118) #16	SLC24A1 (ENSCJAG00000007180) #17	DENND4A (ENSCJAG00000007209) #21	RAB11A (ENSCJAG00000042037) #22	ENSCJAG00000083582	MEGF11 (ENSCJAG00000007353) #24	DIS3L (ENSCJAG00000007411) #25	ENSCJAG00000085355	MAP2K1 (ENSCJAG00000007460) #27	SNAPC5 (ENSCJAG00000070895) #28	ENSCJAG00000007491 #29	ZWILCH (ENSCJAG00000007524) #30	LCTL (ENSCJAG00000007558) #31	SMAD6 (ENSCJAG00000044644) #32	SMAD3 (ENSCJAG00000002088) #33	AAGAB (ENSCJAG00000002113) #34	IQCH (ENSCJAG00000002130) #35	ENSCJAG00000051609	ENSCJAG00000073121
Mas night monkey	MODERN SPECIES	599	MTFMT (ENSANAG00000030327)	SLC51B (ENSANAG00000025993)	RASL12 (ENSANAG00000027475)	UBAP1L (ENSANAG00000029321) #7	PDCD7 (ENSANAG00000020593) #8	CLPX (ENSANAG00000023812) #9	CILP (ENSANAG00000022242) #10	PARP16 (ENSANAG00000026820) #11	IGDCC3 (ENSANAG00000021787) #12	IGDCC4 (ENSANAG00000026571) #13	DPP8 (ENSANAG00000038141) #14	ENSANAG00000026926 #15	INTS14 (ENSANAG00000038417) #16	SLC24A1 (ENSANAG00000016940) #17	DENND4A (ENSANAG00000037563) #21	RAB11A (ENSANAG00000008429) #22	MEGF11 (ENSANAG00000031211) #24	DIS3L (ENSANAG00000024523) #25	ENSANAG00000030739 #26	MAP2K1 (ENSANAG00000023179) #27	ENSANAG00000023149 #28	ENSANAG00000029866 #29	ZWILCH (ENSANAG00000037776) #30	LCTL (ENSANAG00000029715) #31	ENSANAG00000038383	IL33 (ENSANAG00000019780)	ENSANAG00000033312	KIAA2026 (ENSANAG00000028777)	MLANA (ENSANAG00000036926)	ERMP1 (ENSANAG00000034115)	RIC1 (ENSANAG00000037454)
Catarrhini	ANCESTRAL SPECIES	20	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.a.a #29	ENSGT00390000013696 #30	ENSGT00910000147890	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35
Cercopithecidae	ANCESTRAL SPECIES	21	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625.c #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.a.a #29	ENSGT00390000013696 #30	ENSGT00910000147890	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942
Rhinopithecus	ANCESTRAL SPECIES	49	ENSGT00390000017828	ENSGT00390000010409	ENSGT00940000160167	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625.c #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.a.a #29	ENSGT00390000013696 #30	ENSGT00910000147890	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942
Black snub-nosed monkey	MODERN SPECIES	1519						ENSRBIG00000028588 #9	CILP (ENSRBIG00000004854) #10	PARP16 (ENSRBIG00000040761) #11	IGDCC3 (ENSRBIG00000032739) #12	IGDCC4 (ENSRBIG00000024016) #13	DPP8 (ENSRBIG00000037591) #14	HACD3 (ENSRBIG00000040553) #15	INTS14 (ENSRBIG00000037004) #16	SLC24A1 (ENSRBIG00000029938) #17	DENND4A (ENSRBIG00000043812) #21	RAB11A (ENSRBIG00000035649) #22	MEGF11 (ENSRBIG00000032238) #24	DIS3L (ENSRBIG00000029360) #25	TIPIN (ENSRBIG00000035207) #26	MAP2K1 (ENSRBIG00000031516) #27	SNAPC5 (ENSRBIG00000033556) #28	ENSRBIG00000043139 #29	ZWILCH (ENSRBIG00000043121) #30	ENSRBIG00000038789	LCTL (ENSRBIG00000034724) #31	ENSRBIG00000044058	SMAD6 (ENSRBIG00000039005) #32	SMAD3 (ENSRBIG00000026650) #33	AAGAB (ENSRBIG00000027896) #34	IQCH (ENSRBIG00000037509) #35	C15orf61 (ENSRBIG00000041044)
Golden snub-nosed monkey	MODERN SPECIES	1106																RAB11A (ENSRROG00000035305) #22	MEGF11 (ENSRROG00000025747) #24	DIS3L (ENSRROG00000038323) #25	TIPIN (ENSRROG00000004107) #26	MAP2K1 (ENSRROG00000034405) #27	SNAPC5 (ENSRROG00000042536) #28	ENSRROG00000036201 #29	ZWILCH (ENSRROG00000042656) #30	LCTL (ENSRROG00000040652) #31	ENSRROG00000034499	ENSRROG00000009183	ENSRROG00000043245 #32	ENSRROG00000012076	ENSRROG00000003570	SMAD3 (ENSRROG00000024517) #33	AAGAB (ENSRROG00000042217) #34
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625.c #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.a.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942
Vervet Monkey	MODERN SPECIES	18	SLC51B (ENSCSAG00000012708)	RASL12 (ENSCSAG00000012718)	KBTBD13 (ENSCSAG00000019737)	UBAP1L (ENSCSAG00000012725) #7	PDCD7 (ENSCSAG00000012751) #8	CLPX (ENSCSAG00000012812) #9	CILP (ENSCSAG00000012835) #10	PARP16 (ENSCSAG00000012842) #11	IGDCC3 (ENSCSAG00000012887) #12	IGDCC4 (ENSCSAG00000012938) #13	DPP8 (ENSCSAG00000012960) #14	HACD3 (ENSCSAG00000012971) #15	INTS14 (ENSCSAG00000012981) #16	SLC24A1 (ENSCSAG00000013003) #17	DENND4A (ENSCSAG00000013032) #21	RAB11A (ENSCSAG00000013038) #22	MEGF11 (ENSCSAG00000013112) #24	DIS3L (ENSCSAG00000013140) #25	TIPIN (ENSCSAG00000013176) #26	MAP2K1 (ENSCSAG00000013191) #27	SNAPC5 (ENSCSAG00000013199) #28	ENSCSAG00000013205 ##29	ZWILCH (ENSCSAG00000013218) #30	LCTL (ENSCSAG00000013237) #31	SMAD6 (ENSCSAG00000013248) #32	ENSCSAG00000013271	ENSCSAG00000019736	SMAD3 (ENSCSAG00000013275) #33	AAGAB (ENSCSAG00000013281) #34	IQCH (ENSCSAG00000013352) #35	C15orf61 (ENSCSAG00000013380)
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625.c #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.a.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942
Cercopithecinae_b	ANCESTRAL SPECIES	31	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625.c #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.a.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942
Olive baboon	MODERN SPECIES	17	SLC51B (ENSPANG00000016744)	RASL12 (ENSPANG00000016745)	KBTBD13 (ENSPANG00000007309)	UBAP1L (ENSPANG00000016746) #7	PDCD7 (ENSPANG00000016743) #8	CLPX (ENSPANG00000016723) #9	CILP (ENSPANG00000016724) #10	PARP16 (ENSPANG00000016725) #11	IGDCC3 (ENSPANG00000016709) #12	IGDCC4 (ENSPANG00000016710) #13	DPP8 (ENSPANG00000016711) #14	HACD3 (ENSPANG00000016698) #15	INTS14 (ENSPANG00000016699) #16	SLC24A1 (ENSPANG00000016700) #17	DENND4A (ENSPANG00000016685) #21	RAB11A (ENSPANG00000016687) #22	MEGF11 (ENSPANG00000016670) #24	ENSPANG00000024144	ENSPANG00000046531	DIS3L (ENSPANG00000016671) #25	TIPIN (ENSPANG00000016672) #26	MAP2K1 (ENSPANG00000016664) #27	SNAPC5 (ENSPANG00000016665) #28	ENSPANG00000016666 #29	ZWILCH (ENSPANG00000016646) #30	LCTL (ENSPANG00000016647) #31	SMAD6 (ENSPANG00000016648) #32	ENSPANG00000016626	SMAD3 (ENSPANG00000016627) #33	AAGAB (ENSPANG00000016628) #34	IQCH (ENSPANG00000016625) #35
Cercopithecinae_d	ANCESTRAL SPECIES	37	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625.c #9	ENSGT00390000008152.B.b #10	ENSGT00910000147481	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.a.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942
Drill	MODERN SPECIES	253	SLC51B (ENSMLEG00000026018)	RASL12 (ENSMLEG00000043142)	KBTBD13 (ENSMLEG00000023512)	UBAP1L (ENSMLEG00000037677) #7	ENSMLEG00000029629 #9	CILP (ENSMLEG00000042537) #10	ENSMLEG00000027861	PARP16 (ENSMLEG00000035171) #11	IGDCC3 (ENSMLEG00000038371) #12	IGDCC4 (ENSMLEG00000028139) #13	DPP8 (ENSMLEG00000039474) #14	HACD3 (ENSMLEG00000005763) #15	INTS14 (ENSMLEG00000027622) #16	SLC24A1 (ENSMLEG00000039031) #17	DENND4A (ENSMLEG00000041101) #21	RAB11A (ENSMLEG00000032505) #22	MEGF11 (ENSMLEG00000042443) #24	ENSMLEG00000039621	DIS3L (ENSMLEG00000034558) #25	TIPIN (ENSMLEG00000031419) #26	MAP2K1 (ENSMLEG00000034124) #27	SNAPC5 (ENSMLEG00000044262) #28	ENSMLEG00000043250 #29	ZWILCH (ENSMLEG00000031789) #30	LCTL (ENSMLEG00000011538) #31	ENSMLEG00000036582	ENSMLEG00000039010	ENSMLEG00000033311	ENSMLEG00000039372	SMAD3 (ENSMLEG00000032633) #33	AAGAB (ENSMLEG00000042581) #34
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	336	RASL12 (ENSCATG00000042289)	KBTBD13 (ENSCATG00000021610)	UBAP1L (ENSCATG00000035325) #7	PDCD7 (ENSCATG00000032985) #8	ENSCATG00000041300 #9	CILP (ENSCATG00000007240) #10	ENSCATG00000031421	PARP16 (ENSCATG00000029968) #11	IGDCC3 (ENSCATG00000041269) #12	IGDCC4 (ENSCATG00000041870) #13	DPP8 (ENSCATG00000037927) #14	HACD3 (ENSCATG00000030252) #15	INTS14 (ENSCATG00000039488) #16	SLC24A1 (ENSCATG00000034684) #17	DENND4A (ENSCATG00000030001) #21	RAB11A (ENSCATG00000034739) #22	MEGF11 (ENSCATG00000032543) #24	DIS3L (ENSCATG00000044661) #25	TIPIN (ENSCATG00000040328) #26	MAP2K1 (ENSCATG00000038127) #27	SNAPC5 (ENSCATG00000029571) #28	ENSCATG00000031544 ##29	ZWILCH (ENSCATG00000036836) #30	LCTL (ENSCATG00000033622) #31	ENSCATG00000019079	SMAD6 (ENSCATG00000002013) #32	ENSCATG00000035445	ENSCATG00000000879	SMAD3 (ENSCATG00000009733) #33	AAGAB (ENSCATG00000043588) #34	IQCH (ENSCATG00000042766) #35
Sooty mangabey	MODERN SPECIES	115							ENSCATG00000030821	CYP2C18 (ENSCATG00000040270)	CYP2C19 (ENSCATG00000035772)	HELLS (ENSCATG00000033830)	TBC1D12 (ENSCATG00000040590)	ENSCATG00000040576	NOC3L (ENSCATG00000035635)	PLCE1 (ENSCATG00000032075)	SLC35G1 (ENSCATG00000032972)	ENSCATG00000036621 #22	LGI1 (ENSCATG00000032789)	FRA10AC1 (ENSCATG00000038055)	PDE6C (ENSCATG00000029819)	FFAR4 (ENSCATG00000033579)	RBP4 (ENSCATG00000036680)	CEP55 (ENSCATG00000028663)	MYOF (ENSCATG00000041418)	ENSCATG00000033716	CYP26C1 (ENSCATG00000039097)	EXOC6 (ENSCATG00000035172)	ENSCATG00000022006	HHEX (ENSCATG00000042941)	KIF11 (ENSCATG00000040149)	IDE (ENSCATG00000039886)	ENSCATG00000039239
Macaca	ANCESTRAL SPECIES	1	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625.c #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.a.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625.c #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.a.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT01030000234570.d.b.a.a.a.b.a.b.a.c.b	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942
Rhesus	MODERN SPECIES	17	MTFMT (ENSMMUG00000061537)	SLC51B (ENSMMUG00000049468)	RASL12 (ENSMMUG00000004029)	KBTBD13 (ENSMMUG00000004028)	PDCD7 (ENSMMUG00000006297) #8	CLPX (ENSMMUG00000006714) #9	CILP (ENSMMUG00000009659) #10	PARP16 (ENSMMUG00000005749) #11	IGDCC3 (ENSMMUG00000021783) #12	IGDCC4 (ENSMMUG00000021788) #13	DPP8 (ENSMMUG00000015447) #14	HACD3 (ENSMMUG00000015450) #15	INTS14 (ENSMMUG00000008095) #16	SLC24A1 (ENSMMUG00000022059) #17	DENND4A (ENSMMUG00000022056) #21	RAB11A (ENSMMUG00000008006) #22	MEGF11 (ENSMMUG00000008007) #24	DIS3L (ENSMMUG00000003693) #25	TIPIN (ENSMMUG00000003695) #26	MAP2K1 (ENSMMUG00000016840) #27	SNAPC5 (ENSMMUG00000060148) #28	RPL4 (ENSMMUG00000016844) #29	ZWILCH (ENSMMUG00000029588) #30	LCTL (ENSMMUG00000017447) #31	ENSMMUG00000063378	SMAD6 (ENSMMUG00000019018) #32	ENSMMUG00000057696	SMAD3 (ENSMMUG00000015455) #33	ENSMMUG00000051534	AAGAB (ENSMMUG00000041415) #34	IQCH (ENSMMUG00000015458) #35
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000047489	CILP (ENSMFAG00000039594) #10	PARP16 (ENSMFAG00000051640) #11	ENSMFAG00000036137	ENSMFAG00000061482	IGDCC3 (ENSMFAG00000041666) #12	IGDCC4 (ENSMFAG00000031165) #13	DPP8 (ENSMFAG00000043661) #14	HACD3 (ENSMFAG00000032102) #15	INTS14 (ENSMFAG00000031689) #16	SLC24A1 (ENSMFAG00000000105) #17	DENND4A (ENSMFAG00000030601) #21	ENSMFAG00000047947	ENSMFAG00000060677	ENSMFAG00000055472	RAB11A (ENSMFAG00000000699) #22	MEGF11 (ENSMFAG00000038247) #24	DIS3L (ENSMFAG00000035628) #25	TIPIN (ENSMFAG00000031924) #26	MAP2K1 (ENSMFAG00000036522) #27	ENSMFAG00000063036	SNAPC5 (ENSMFAG00000046383) #28	RPL4 (ENSMFAG00000036412) #29	ZWILCH (ENSMFAG00000036529) #30	LCTL (ENSMFAG00000000458) #31	ENSMFAG00000037066	ENSMFAG00000062655	SMAD3 (ENSMFAG00000001781) #33	AAGAB (ENSMFAG00000040550) #34	IQCH (ENSMFAG00000001124) #35	C15orf61 (ENSMFAG00000053739)
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	77	SLC51B (ENSMNEG00000037631)	RASL12 (ENSMNEG00000043863)	KBTBD13 (ENSMNEG00000014591)	UBAP1L (ENSMNEG00000039075) #7	PDCD7 (ENSMNEG00000033283) #8	ENSMNEG00000030071 #9	CILP (ENSMNEG00000031330) #10	PARP16 (ENSMNEG00000028481) #11	IGDCC3 (ENSMNEG00000043800) #12	IGDCC4 (ENSMNEG00000039603) #13	DPP8 (ENSMNEG00000033598) #14	HACD3 (ENSMNEG00000037877) #15	INTS14 (ENSMNEG00000039516) #16	SLC24A1 (ENSMNEG00000041188) #17	DENND4A (ENSMNEG00000031159) #21	RAB11A (ENSMNEG00000043040) #22	MEGF11 (ENSMNEG00000028540) #24	DIS3L (ENSMNEG00000035066) #25	TIPIN (ENSMNEG00000031947) #26	MAP2K1 (ENSMNEG00000027299) #27	SNAPC5 (ENSMNEG00000032504) #28	ENSMNEG00000027886 #29	ZWILCH (ENSMNEG00000034955) #30	LCTL (ENSMNEG00000002923) #31	ENSMNEG00000031888	SMAD6 (ENSMNEG00000034598) #32	ENSMNEG00000032567	ENSMNEG00000030486	SMAD3 (ENSMNEG00000033094) #33	AAGAB (ENSMNEG00000040056) #34	IQCH (ENSMNEG00000034386) #35
Pig-tailed macaque	MODERN SPECIES	104				ENSMNEG00000040532	CYP2C9 (ENSMNEG00000038926)	ENSMNEG00000042327	ENSMNEG00000037980	ENSMNEG00000041232	ENSMNEG00000044889	HELLS (ENSMNEG00000042628)	TBC1D12 (ENSMNEG00000042246)	ENSMNEG00000021980	NOC3L (ENSMNEG00000027484)	PLCE1 (ENSMNEG00000030694)	SLC35G1 (ENSMNEG00000043665)	ENSMNEG00000033144 #22	LGI1 (ENSMNEG00000036411)	FRA10AC1 (ENSMNEG00000040322)	PDE6C (ENSMNEG00000040848)	FFAR4 (ENSMNEG00000031922)	RBP4 (ENSMNEG00000031052)	CEP55 (ENSMNEG00000032641)	MYOF (ENSMNEG00000013341)	ENSMNEG00000044241	ENSMNEG00000030366	CYP26A1 (ENSMNEG00000028946)	CYP26C1 (ENSMNEG00000045176)	EXOC6 (ENSMNEG00000043219)	HHEX (ENSMNEG00000037100)	KIF11 (ENSMNEG00000020591)	ENSMNEG00000028830
Hominoidea	ANCESTRAL SPECIES	20	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.b #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00910000146962
Hominidae	ANCESTRAL SPECIES	22	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.b #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00910000146962
Orangutan	MODERN SPECIES	6	SLC51B (ENSPPYG00000037628)	RASL12 (ENSPPYG00000006560)	KBTBD13 (ENSPPYG00000006561)	UBAP1L (ENSPPYG00000030696) #7	PDCD7 (ENSPPYG00000006562) #8	CLPX (ENSPPYG00000006563) #9	CILP (ENSPPYG00000006564) #10	PARP16 (ENSPPYG00000006565) #11	IGDCC3 (ENSPPYG00000006566) #12	IGDCC4 (ENSPPYG00000006567) #13	DPP8 (ENSPPYG00000006568) #14	HACD3 (ENSPPYG00000006569) #15	INTS14 (ENSPPYG00000006570) #16	SLC24A1 (ENSPPYG00000006571) #17	DENND4A (ENSPPYG00000006572) #21	RAB11A (ENSPPYG00000006573) #22	MEGF11 (ENSPPYG00000039385) #24	DIS3L (ENSPPYG00000006575) #25	TIPIN (ENSPPYG00000031745) #26	MAP2K1 (ENSPPYG00000006576) #27	ENSPPYG00000032290	SNAPC5 (ENSPPYG00000040277) #28	RPL4 (ENSPPYG00000006578) #29	ZWILCH (ENSPPYG00000006579) #30	LCTL (ENSPPYG00000006580) #31	ENSPPYG00000006581 #32	ENSPPYG00000006582	SMAD3 (ENSPPYG00000006583) #33	AAGAB (ENSPPYG00000006584) #34	IQCH (ENSPPYG00000006585) #35	C15orf61 (ENSPPYG00000006586)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	22	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.b.a.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00910000147041	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942
Homo/Pan group	ANCESTRAL SPECIES	21	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.b.a.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00910000147041	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942
Human	MODERN SPECIES	6	SLC51B (ENSG00000186198)	RASL12 (ENSG00000103710)	KBTBD13 (ENSG00000234438)	UBAP1L (ENSG00000246922) #7	PDCD7 (ENSG00000090470) #8	CLPX (ENSG00000166855) #9	CILP (ENSG00000138615) #10	PARP16 (ENSG00000138617) #11	IGDCC3 (ENSG00000174498) #12	IGDCC4 (ENSG00000103742) #13	DPP8 (ENSG00000074603) #14	HACD3 (ENSG00000074696) #15	INTS14 (ENSG00000138614) #16	SLC24A1 (ENSG00000074621) #17	DENND4A (ENSG00000174485) #21	RAB11A (ENSG00000103769) #22	MEGF11 (ENSG00000157890) #24	DIS3L (ENSG00000166938) #25	TIPIN (ENSG00000075131) #26	MAP2K1 (ENSG00000169032) #27	SNAPC5 (ENSG00000174446) #28	RPL4 (ENSG00000174444) #29	ZWILCH (ENSG00000174442) #30	LCTL (ENSG00000188501) #31	SMAD6 (ENSG00000137834) #32	SMAD3 (ENSG00000166949) #33	AAGAB (ENSG00000103591) #34	IQCH (ENSG00000103599) #35	C15orf61 (ENSG00000189227)	MAP2K5 (ENSG00000137764)	SKOR1 (ENSG00000188779)
Pan	ANCESTRAL SPECIES	20	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.g.a #26	ENSGT00510000046986.m.a	ENSGT00940000153487.b.b.i.a #27	ENSGT00390000010331 #28	ENSGT00390000018145.cb.a.b.a.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00910000147041	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	6	SLC51B (ENSPPAG00000029986)	RASL12 (ENSPPAG00000031385)	KBTBD13 (ENSPPAG00000010722)	ENSPPAG00000033811 #7	ENSPPAG00000035027 #8	CLPX (ENSPPAG00000040563) #9	CILP (ENSPPAG00000042751) #10	PARP16 (ENSPPAG00000030232) #11	IGDCC3 (ENSPPAG00000042057) #12	IGDCC4 (ENSPPAG00000036548) #13	DPP8 (ENSPPAG00000032419) #14	HACD3 (ENSPPAG00000014660) #15	INTS14 (ENSPPAG00000030391) #16	SLC24A1 (ENSPPAG00000042941) #17	DENND4A (ENSPPAG00000022752) #21	RAB11A (ENSPPAG00000030195) #22	MEGF11 (ENSPPAG00000043580) #24	DIS3L (ENSPPAG00000019888) #25	TIPIN (ENSPPAG00000033427) #26	ENSPPAG00000041842	ENSPPAG00000038145	MAP2K1 (ENSPPAG00000028577) #27	ENSPPAG00000033063	SNAPC5 (ENSPPAG00000041196) #28	ENSPPAG00000035309 #29	ZWILCH (ENSPPAG00000033861) #30	LCTL (ENSPPAG00000040836) #31	SMAD6 (ENSPPAG00000027722) #32	ENSPPAG00000036915	ENSPPAG00000020485	SMAD3 (ENSPPAG00000033769) #33
Bonobo	MODERN SPECIES	1	TCTN3 (ENSPPAG00000043730)	ALDH18A1 (ENSPPAG00000041118)	SORBS1 (ENSPPAG00000027495)	PDLIM1 (ENSPPAG00000024370)	ACSM6 (ENSPPAG00000037620)	CYP2C8 (ENSPPAG00000040639)	CYP2C9 (ENSPPAG00000042322)	CYP2C19 (ENSPPAG00000034854)	HELLS (ENSPPAG00000001726)	TBC1D12 (ENSPPAG00000031966)	NOC3L (ENSPPAG00000043755)	PLCE1 (ENSPPAG00000033051)	ENSPPAG00000026684	ENSPPAG00000041375	SLC35G1 (ENSPPAG00000030552)	ENSPPAG00000027315 #22	LGI1 (ENSPPAG00000035614)	FRA10AC1 (ENSPPAG00000038889)	PDE6C (ENSPPAG00000026870)	RBP4 (ENSPPAG00000041588)	FFAR4 (ENSPPAG00000013271)	CEP55 (ENSPPAG00000040332)	MYOF (ENSPPAG00000040575)	ENSPPAG00000029158	CYP26A1 (ENSPPAG00000033856)	CYP26C1 (ENSPPAG00000036382)	EXOC6 (ENSPPAG00000026890)	HHEX (ENSPPAG00000036114)	ENSPPAG00000033361	KIF11 (ENSPPAG00000043128)	IDE (ENSPPAG00000044069)
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	6	SLC51B (ENSPTRG00000007172)	RASL12 (ENSPTRG00000007173)	KBTBD13 (ENSPTRG00000042018)	UBAP1L (ENSPTRG00000039407) #7	PDCD7 (ENSPTRG00000045629) #8	CLPX (ENSPTRG00000007176) #9	CILP (ENSPTRG00000007177) #10	PARP16 (ENSPTRG00000007178) #11	IGDCC3 (ENSPTRG00000007179) #12	IGDCC4 (ENSPTRG00000007180) #13	DPP8 (ENSPTRG00000007182) #14	HACD3 (ENSPTRG00000007183) #15	INTS14 (ENSPTRG00000007184) #16	SLC24A1 (ENSPTRG00000007185) #17	DENND4A (ENSPTRG00000007186) #21	RAB11A (ENSPTRG00000044358) #22	MEGF11 (ENSPTRG00000007189) #24	DIS3L (ENSPTRG00000007191) #25	TIPIN (ENSPTRG00000007192) #26	ENSPTRG00000051889	MAP2K1 (ENSPTRG00000007193) #27	ENSPTRG00000049603	SNAPC5 (ENSPTRG00000007194) #28	RPL4 (ENSPTRG00000007195) #29	ZWILCH (ENSPTRG00000007196) #30	LCTL (ENSPTRG00000007197) #31	SMAD6 (ENSPTRG00000007198) #32	ENSPTRG00000044014	ENSPTRG00000047146	SMAD3 (ENSPTRG00000007199) #33	AAGAB (ENSPTRG00000007202) #34
Chimpanzee	MODERN SPECIES	1	ALDH18A1 (ENSPTRG00000002785)	SORBS1 (ENSPTRG00000002784)	PDLIM1 (ENSPTRG00000002783)	ACSM6 (ENSPTRG00000002782)	CYP2C8 (ENSPTRG00000002781)	CYP2C9 (ENSPTRG00000002780)	CYP2C19 (ENSPTRG00000002779)	ENSPTRG00000051994	HELLS (ENSPTRG00000002778)	TBC1D12 (ENSPTRG00000002777)	NOC3L (ENSPTRG00000002776)	PLCE1 (ENSPTRG00000002775)	ENSPTRG00000045483	PIPSL (ENSPTRG00000046503)	SLC35G1 (ENSPTRG00000002772)	ENSPTRG00000047673 #22	LGI1 (ENSPTRG00000002771)	FRA10AC1 (ENSPTRG00000002770)	PDE6C (ENSPTRG00000002769)	RBP4 (ENSPTRG00000002768)	FFAR4 (ENSPTRG00000002767)	CEP55 (ENSPTRG00000002766)	MYOF (ENSPTRG00000002765)	ENSPTRG00000052387	ENSPTRG00000047997	CYP26A1 (ENSPTRG00000002763)	CYP26C1 (ENSPTRG00000002762)	EXOC6 (ENSPTRG00000002761)	HHEX (ENSPTRG00000002760)	ENSPTRG00000042999	KIF11 (ENSPTRG00000002758)
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	6	SLC51B (ENSGGOG00000015637)	RASL12 (ENSGGOG00000024110)	UBAP1L (ENSGGOG00000038121) #7	PDCD7 (ENSGGOG00000005814) #8	CLPX (ENSGGOG00000000326) #9	CILP (ENSGGOG00000042968) #10	PARP16 (ENSGGOG00000022851) #11	IGDCC3 (ENSGGOG00000010452) #12	IGDCC4 (ENSGGOG00000010463) #13	DPP8 (ENSGGOG00000012470) #14	HACD3 (ENSGGOG00000022837) #15	INTS14 (ENSGGOG00000003838) #16	SLC24A1 (ENSGGOG00000016389) #17	DENND4A (ENSGGOG00000014870) #21	ENSGGOG00000022841	RAB11A (ENSGGOG00000014252) #22	MEGF11 (ENSGGOG00000000293) #24	DIS3L (ENSGGOG00000001549) #25	TIPIN (ENSGGOG00000000061) #26	ENSGGOG00000024529	MAP2K1 (ENSGGOG00000003687) #27	ENSGGOG00000042752	SNAPC5 (ENSGGOG00000003693) #28	ENSGGOG00000003695 #29	ZWILCH (ENSGGOG00000003703) #30	LCTL (ENSGGOG00000006350) #31	SMAD6 (ENSGGOG00000013002) #32	ENSGGOG00000038329	ENSGGOG00000012045	ENSGGOG00000004714 #34	IQCH (ENSGGOG00000004722) #35
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	1	ALDH18A1 (ENSGGOG00000012491)	ENSGGOG00000010457	PDLIM1 (ENSGGOG00000014381)	ACSM6 (ENSGGOG00000002283)	CYP2C8 (ENSGGOG00000000522)	CYP2C9 (ENSGGOG00000015433)	CYP2C19 (ENSGGOG00000000057)	CYP2C18 (ENSGGOG00000007842)	HELLS (ENSGGOG00000008103)	ENSGGOG00000026937	NOC3L (ENSGGOG00000014038)	PLCE1 (ENSGGOG00000007807)	ENSGGOG00000004954	ENSGGOG00000039423	SLC35G1 (ENSGGOG00000025811)	ENSGGOG00000042755 #22	ENSGGOG00000040835 #22	LGI1 (ENSGGOG00000002245)	FRA10AC1 (ENSGGOG00000010770)	PDE6C (ENSGGOG00000004416)	RBP4 (ENSGGOG00000008167)	FFAR4 (ENSGGOG00000004413)	CEP55 (ENSGGOG00000003954)	MYOF (ENSGGOG00000006659)	ENSGGOG00000040568	CYP26A1 (ENSGGOG00000009114)	CYP26C1 (ENSGGOG00000009105)	EXOC6 (ENSGGOG00000027393)	ENSGGOG00000039693	ENSGGOG00000024168	ENSGGOG00000039016
Gorilla	MODERN SPECIES	1	KIF11 (ENSGGOG00000011847)	ENSGGOG00000039016	ENSGGOG00000024168	ENSGGOG00000039693	EXOC6 (ENSGGOG00000027393)	CYP26C1 (ENSGGOG00000009105)	CYP26A1 (ENSGGOG00000009114)	ENSGGOG00000040568	MYOF (ENSGGOG00000006659)	CEP55 (ENSGGOG00000003954)	FFAR4 (ENSGGOG00000004413)	RBP4 (ENSGGOG00000008167)	PDE6C (ENSGGOG00000004416)	FRA10AC1 (ENSGGOG00000010770)	LGI1 (ENSGGOG00000002245)	ENSGGOG00000040835 #22	ENSGGOG00000042755 #22	SLC35G1 (ENSGGOG00000025811)	ENSGGOG00000039423	ENSGGOG00000004954	PLCE1 (ENSGGOG00000007807)	NOC3L (ENSGGOG00000014038)	ENSGGOG00000026937	HELLS (ENSGGOG00000008103)	CYP2C18 (ENSGGOG00000007842)	CYP2C19 (ENSGGOG00000000057)	CYP2C9 (ENSGGOG00000015433)	CYP2C8 (ENSGGOG00000000522)	ACSM6 (ENSGGOG00000002283)	PDLIM1 (ENSGGOG00000014381)	ENSGGOG00000010457
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	21	SLC51B (ENSNLEG00000012610)	RASL12 (ENSNLEG00000012613)	UBAP1L (ENSNLEG00000012621) #7	PDCD7 (ENSNLEG00000012628) #8	CLPX (ENSNLEG00000012633) #9	CILP (ENSNLEG00000012638) #10	ENSNLEG00000034448	ENSNLEG00000012643 #11	IGDCC3 (ENSNLEG00000012651) #12	IGDCC4 (ENSNLEG00000012668) #13	DPP8 (ENSNLEG00000012689) #14	HACD3 (ENSNLEG00000012725) #15	INTS14 (ENSNLEG00000012745) #16	ENSNLEG00000012767 #17	DENND4A (ENSNLEG00000012772) #21	RAB11A (ENSNLEG00000012853) #22	MEGF11 (ENSNLEG00000012863) #24	DIS3L (ENSNLEG00000012891) #25	TIPIN (ENSNLEG00000012909) #26	MAP2K1 (ENSNLEG00000012913) #27	SNAPC5 (ENSNLEG00000033124) #28	ENSNLEG00000012938 #29	ZWILCH (ENSNLEG00000012950) #30	LCTL (ENSNLEG00000012956) #31	SMAD6 (ENSNLEG00000032864) #32	ENSNLEG00000028836	SMAD3 (ENSNLEG00000012983) #33	AAGAB (ENSNLEG00000013006) #34	IQCH (ENSNLEG00000013025) #35	C15orf61 (ENSNLEG00000013065)	MAP2K5 (ENSNLEG00000013066)
Gibbon	MODERN SPECIES	18	ENSNLEG00000030823	ENSNLEG00000013078	PDLIM1 (ENSNLEG00000013055)	ENSNLEG00000031454	ENSNLEG00000027908	ACSM6 (ENSNLEG00000013050)	CYP2C8 (ENSNLEG00000013031)	ENSNLEG00000013026	CYP2C19 (ENSNLEG00000013002)	HELLS (ENSNLEG00000012987)	TBC1D12 (ENSNLEG00000012968)	NOC3L (ENSNLEG00000012959)	PLCE1 (ENSNLEG00000012910)	ENSNLEG00000032681	SLC35G1 (ENSNLEG00000029824)	ENSNLEG00000034751 #22	LGI1 (ENSNLEG00000012889)	FRA10AC1 (ENSNLEG00000012877)	PDE6C (ENSNLEG00000012855)	ENSNLEG00000012845	RBP4 (ENSNLEG00000012849)	CEP55 (ENSNLEG00000032627)	MYOF (ENSNLEG00000012741)	ENSNLEG00000034323	CYP26A1 (ENSNLEG00000012727)	CYP26C1 (ENSNLEG00000012723)	EXOC6 (ENSNLEG00000012713)	ENSNLEG00000012707	KIF11 (ENSNLEG00000012674)	IDE (ENSNLEG00000012631)	MARCHF5 (ENSNLEG00000012617)
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Glires	ANCESTRAL SPECIES	15	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Lagomorpha	ANCESTRAL SPECIES	7	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00950000183167.a.b.a	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00940000157505	ENSGT00940000158440
Pika	MODERN SPECIES	5428																RAB11A (ENSOPRG00000004681) #22	MEGF11 (ENSOPRG00000004700) #24	ENSOPRG00000004753 #25	TIPIN (ENSOPRG00000004809) #26
Rabbit	MODERN SPECIES	8	RASL12 (ENSOCUG00000010729)	KBTBD13 (ENSOCUG00000022127)	UBAP1L (ENSOCUG00000029183) #7	ENSOCUG00000032347	PDCD7 (ENSOCUG00000007292) #8	CLPX (ENSOCUG00000007293) #9	CILP (ENSOCUG00000007302) #10	PARP16 (ENSOCUG00000007306) #11	IGDCC3 (ENSOCUG00000000310) #12	IGDCC4 (ENSOCUG00000000312) #13	DPP8 (ENSOCUG00000011751) #14	HACD3 (ENSOCUG00000007513) #15	INTS14 (ENSOCUG00000007520) #16	ENSOCUG00000027844 #17	DENND4A (ENSOCUG00000007953) #21	RAB11A (ENSOCUG00000014755) #22	MEGF11 (ENSOCUG00000014760) #24	DIS3L (ENSOCUG00000002206) #25	TIPIN (ENSOCUG00000002212) #26	ENSOCUG00000023060	MAP2K1 (ENSOCUG00000008782) #27	SNAPC5 (ENSOCUG00000039231) #28	ENSOCUG00000008794 #29	ZWILCH (ENSOCUG00000008800) #30	LCTL (ENSOCUG00000021771) #31	ENSOCUG00000006134 #32	ENSOCUG00000014186	SMAD3 (ENSOCUG00000029601) #33	ENSOCUG00000039204	AAGAB (ENSOCUG00000006644) #34	IQCH (ENSOCUG00000006647) #35
Rodentia	ANCESTRAL SPECIES	3	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Kangaroo rat	MODERN SPECIES	330	Mtfmt (ENSDORG00000004684)	Slc51b (ENSDORG00000023591)	Rasl12 (ENSDORG00000000119)	Kbtbd13 (ENSDORG00000024320)	Ubap1l (ENSDORG00000024217) #7	Pdcd7 (ENSDORG00000008214) #8	Clpx (ENSDORG00000016116) #9	Cilp (ENSDORG00000014410) #10	Parp16 (ENSDORG00000028265) #11	Igdcc4 (ENSDORG00000015148) #13	Dpp8 (ENSDORG00000009050) #14	Hacd3 (ENSDORG00000009307) #15	Ints14 (ENSDORG00000009309) #16	Slc24a1 (ENSDORG00000007185) #17	Dennd4a (ENSDORG00000002146) #21	ENSDORG00000028034 #22	ENSDORG00000026125	Megf11 (ENSDORG00000001008) #24	Dis3l (ENSDORG00000014909) #25	Tipin (ENSDORG00000028988) #26	Map2k1 (ENSDORG00000001301) #27	Snapc5 (ENSDORG00000030051) #28	Rpl4 (ENSDORG00000016287) #29	Zwilch (ENSDORG00000016288) #30	Lctl (ENSDORG00000016291) #31	Smad6 (ENSDORG00000028234) #32	ENSDORG00000026894	Smad3 (ENSDORG00000029949) #33	ENSDORG00000026611 #34	Iqch (ENSDORG00000006468) #35	2300009A05Rik (ENSDORG00000028687)
Myomorpha	ANCESTRAL SPECIES	25	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	45	Pcsk1 (ENSJJAG00000014871)	Erap1 (ENSJJAG00000010373)	Lnpep (ENSJJAG00000012174)	Lix1 (ENSJJAG00000023046)	Ghrl (ENSJJAG00000020141)	Sec13 (ENSJJAG00000023600)	Atp2b2 (ENSJJAG00000009628)	Slc6a11 (ENSJJAG00000008690)	Slc6a1 (ENSJJAG00000013717)	Hrh1 (ENSJJAG00000012905)	Atg7 (ENSJJAG00000021264)	Vgll4 (ENSJJAG00000017532)	Tamm41 (ENSJJAG00000015841)	Timp4 (ENSJJAG00000015654)	ENSJJAG00000015072	ENSJJAG00000012036 #22	Pparg (ENSJJAG00000023734)	ENSJJAG00000002861	ENSJJAG00000015646	Mkrn2os (ENSJJAG00000022652)	Mkrn2 (ENSJJAG00000019765)	ENSJJAG00000016961	Tmem40 (ENSJJAG00000009444)	Cand2 (ENSJJAG00000018247)	ENSJJAG00000021233	ENSJJAG00000016695	Ift122 (ENSJJAG00000020288)	Rho (ENSJJAG00000022285)	ENSJJAG00000014828	Plxnd1 (ENSJJAG00000014069)	ENSJJAG00000020659
Lesser Egyptian jerboa	MODERN SPECIES	92	Slc51b (ENSJJAG00000017452)	Rasl12 (ENSJJAG00000019387)	ENSJJAG00000011177	ENSJJAG00000016922 #7	Pdcd7 (ENSJJAG00000012031) #8	Clpx (ENSJJAG00000012714) #9	Cilp (ENSJJAG00000012559) #10	Parp16 (ENSJJAG00000019303) #11	Igdcc3 (ENSJJAG00000010487) #12	Igdcc4 (ENSJJAG00000022092) #13	Dpp8 (ENSJJAG00000018252) #14	Hacd3 (ENSJJAG00000016608) #15	Ints14 (ENSJJAG00000005359) #16	Slc24a1 (ENSJJAG00000009344) #17	ENSJJAG00000012113 #21	ENSJJAG00000015445 #22	Megf11 (ENSJJAG00000023890) #24	ENSJJAG00000019234	Dis3l (ENSJJAG00000016147) #25	Tipin (ENSJJAG00000017947) #26	Map2k1 (ENSJJAG00000021452) #27	Snapc5 (ENSJJAG00000022013) #28	ENSJJAG00000013677 #29	Zwilch (ENSJJAG00000010189) #30	Lctl (ENSJJAG00000013579) #31	Smad6 (ENSJJAG00000019623) #32	Smad3 (ENSJJAG00000021414) #33	ENSJJAG00000018312 #34	Iqch (ENSJJAG00000024416) #35	2300009A05Rik (ENSJJAG00000019436)	Map2k5 (ENSJJAG00000024208)
Lesser Egyptian jerboa	MODERN SPECIES	96	Arhgef38 (ENSJJAG00000014797)	ENSJJAG00000015299	Gstcd (ENSJJAG00000021904)	Npnt (ENSJJAG00000007539)	ENSJJAG00000014460	Aimp1 (ENSJJAG00000016873)	Gimd1 (ENSJJAG00000017692)	Lrp12 (ENSJJAG00000020477)	Dpys (ENSJJAG00000008928)	Dcstamp (ENSJJAG00000011201)	Rims2 (ENSJJAG00000013990)	ENSJJAG00000000607	ENSJJAG00000001990	Slc25a32 (ENSJJAG00000001066)	ENSJJAG00000007630	ENSJJAG00000009949 #22	Fzd6 (ENSJJAG00000012386)	Baalc (ENSJJAG00000016925)	Atp6v1c1 (ENSJJAG00000016526)	Azin1 (ENSJJAG00000020420)	Klf10 (ENSJJAG00000002095)	Odf1 (ENSJJAG00000004566)	Ubr5 (ENSJJAG00000013619)	Rrm2b (ENSJJAG00000015803)	Ncald (ENSJJAG00000017643)	Grhl2 (ENSJJAG00000021484)	Zfp706 (ENSJJAG00000000146)	ENSJJAG00000002258	ENSJJAG00000010886	ENSJJAG00000015918	Snx31 (ENSJJAG00000018446)
Muroidea	ANCESTRAL SPECIES	23	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Upper Galilee mountains blind mole rat	MODERN SPECIES	955	Slc51b (ENSNGAG00000016122)	Rasl12 (ENSNGAG00000019976)	ENSNGAG00000011880	Ubap1l (ENSNGAG00000022357) #7	Pdcd7 (ENSNGAG00000018415) #8	Clpx (ENSNGAG00000001488) #9	Cilp (ENSNGAG00000019472) #10	Parp16 (ENSNGAG00000004884) #11	Igdcc3 (ENSNGAG00000012915) #12	Igdcc4 (ENSNGAG00000022064) #13	Dpp8 (ENSNGAG00000019579) #14	Hacd3 (ENSNGAG00000016924) #15	Ints14 (ENSNGAG00000007105) #16	Slc24a1 (ENSNGAG00000010674) #17	ENSNGAG00000022619 #21	Rab11a (ENSNGAG00000013726) #22	Megf11 (ENSNGAG00000011352) #24	Dis3l (ENSNGAG00000017008) #25	Tipin (ENSNGAG00000018237) #26	Map2k1 (ENSNGAG00000006894) #27	Snapc5 (ENSNGAG00000006133) #28	ENSNGAG00000006653 #29	Zwilch (ENSNGAG00000016626) #30	Lctl (ENSNGAG00000012911) #31	Smad6 (ENSNGAG00000021223) #32	ENSNGAG00000022756	Smad3 (ENSNGAG00000023535) #33	ENSNGAG00000010708 #34	Iqch (ENSNGAG00000019505) #35	2300009A05Rik (ENSNGAG00000004715)	Map2k5 (ENSNGAG00000011076)
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.kb #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Chinese hamster chok1gshd	MODERN SPECIES	284	Slc51b (ENSCGRG00001013856)	Rasl12 (ENSCGRG00001015470)	Kbtbd13 (ENSCGRG00001012125)	Ubap1l (ENSCGRG00001023243) #7	Pdcd7 (ENSCGRG00001011256) #8	Clpx (ENSCGRG00001020872) #9	Cilp (ENSCGRG00001023319) #10	Parp16 (ENSCGRG00001011381) #11	Igdcc3 (ENSCGRG00001015803) #12	Igdcc4 (ENSCGRG00001004819) #13	Dpp8 (ENSCGRG00001024771) #14	Hacd3 (ENSCGRG00001019214) #15	Ints14 (ENSCGRG00001022061) #16	Slc24a1 (ENSCGRG00001023812) #17	Dennd4a (ENSCGRG00001019979) #21	Rab11a (ENSCGRG00001023313) #22	Megf11 (ENSCGRG00001019210) #24	Dis3l (ENSCGRG00001017825) #25	Tipin (ENSCGRG00001018146) #26	Snapc5 (ENSCGRG00001013968) #28	Zwilch (ENSCGRG00001018206) #30	Lctl (ENSCGRG00001017716) #31	Smad6 (ENSCGRG00001002733) #32	Smad3 (ENSCGRG00001013999) #33	Aagab (ENSCGRG00001020082) #34	Iqch (ENSCGRG00001006084) #35	ENSCGRG00001000811	2300009A05Rik (ENSCGRG00001009275)	Map2k5 (ENSCGRG00001024707)	Skor1 (ENSCGRG00001000300)	Pias1 (ENSCGRG00001018818)
Golden Hamster	MODERN SPECIES	672	Rasl12 (ENSMAUG00000021367)	Kbtbd13 (ENSMAUG00000007549)	Ubap1l (ENSMAUG00000019477) #7	Pdcd7 (ENSMAUG00000010175) #8	Clpx (ENSMAUG00000018798) #9	ENSMAUG00000009833	Cilp (ENSMAUG00000019346) #10	Parp16 (ENSMAUG00000014432) #11	Igdcc3 (ENSMAUG00000019761) #12	Igdcc4 (ENSMAUG00000021589) #13	Dpp8 (ENSMAUG00000020059) #14	Hacd3 (ENSMAUG00000004278) #15	Ints14 (ENSMAUG00000020937) #16	Slc24a1 (ENSMAUG00000012813) #17	Dennd4a (ENSMAUG00000018527) #21	Rab11a (ENSMAUG00000018551) #22	Megf11 (ENSMAUG00000003129) #24	Dis3l (ENSMAUG00000008265) #25	Tipin (ENSMAUG00000012421) #26	Map2k1 (ENSMAUG00000011379) #27	Snapc5 (ENSMAUG00000008645) #28	Rpl4 (ENSMAUG00000018867) #29	Zwilch (ENSMAUG00000021210) #30	Lctl (ENSMAUG00000009957) #31	Smad6 (ENSMAUG00000009859) #32	Smad3 (ENSMAUG00000022258) #33	Aagab (ENSMAUG00000005383) #34	Iqch (ENSMAUG00000004333) #35	Map2k5 (ENSMAUG00000015370)	Skor1 (ENSMAUG00000020780)	Pias1 (ENSMAUG00000000785)
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Prairie vole	MODERN SPECIES	13	Slc51b (ENSMOCG00000016544)	Rasl12 (ENSMOCG00000022051)	Kbtbd13 (ENSMOCG00000001263)	Ubap1l (ENSMOCG00000021453) #7	Pdcd7 (ENSMOCG00000007159) #8	Clpx (ENSMOCG00000011980) #9	Cilp (ENSMOCG00000022194) #10	Parp16 (ENSMOCG00000014635) #11	Igdcc3 (ENSMOCG00000017628) #12	Igdcc4 (ENSMOCG00000017733) #13	Dpp8 (ENSMOCG00000018103) #14	Hacd3 (ENSMOCG00000004995) #15	Ints14 (ENSMOCG00000020364) #16	Slc24a1 (ENSMOCG00000002968) #17	Dennd4a (ENSMOCG00000008521) #21	Rab11a (ENSMOCG00000021138) #22	Megf11 (ENSMOCG00000003573) #24	Dis3l (ENSMOCG00000005278) #25	Tipin (ENSMOCG00000010343) #26	Map2k1 (ENSMOCG00000013072) #27	Snapc5 (ENSMOCG00000015348) #28	ENSMOCG00000021901 #29	Zwilch (ENSMOCG00000017159) #30	Lctl (ENSMOCG00000004744) #31	Smad6 (ENSMOCG00000014458) #32	Smad3 (ENSMOCG00000018490) #33	Aagab (ENSMOCG00000021340) #34	Iqch (ENSMOCG00000016873) #35	2300009A05Rik (ENSMOCG00000013991)	Map2k5 (ENSMOCG00000022058)	Skor1 (ENSMOCG00000018261)
Northern American deer mouse	DUPLICATION
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	20	Slc51b (ENSPEMG00000030201)	Rasl12 (ENSPEMG00000026265)	Kbtbd13 (ENSPEMG00000005949)	Ubap1l (ENSPEMG00000017986) #7	Pdcd7 (ENSPEMG00000001830) #8	Clpx (ENSPEMG00000021528) #9	Cilp (ENSPEMG00000021273) #10	Parp16 (ENSPEMG00000022071) #11	Igdcc3 (ENSPEMG00000021097) #12	Igdcc4 (ENSPEMG00000020857) #13	Dpp8 (ENSPEMG00000024195) #14	Hacd3 (ENSPEMG00000008076) #15	Ints14 (ENSPEMG00000008550) #16	Slc24a1 (ENSPEMG00000022814) #17	Dennd4a (ENSPEMG00000022452) #21	ENSPEMG00000021125 #22	Megf11 (ENSPEMG00000017797) #24	Dis3l (ENSPEMG00000001213) #25	Tipin (ENSPEMG00000002370) #26	Map2k1 (ENSPEMG00000007282) #27	Snapc5 (ENSPEMG00000007852) #28	Rpl4 (ENSPEMG00000012064) #29	Zwilch (ENSPEMG00000014485) #30	Lctl (ENSPEMG00000016229) #31	Smad6 (ENSPEMG00000017040) #32	Smad3 (ENSPEMG00000028676) #33	Aagab (ENSPEMG00000018465) #34	ENSPEMG00000028831	Iqch (ENSPEMG00000005753) #35	2300009A05Rik (ENSPEMG00000009306)	Map2k5 (ENSPEMG00000010361)
Northern American deer mouse	MODERN SPECIES	7	Plekhg1 (ENSPEMG00000003381)	Mthfd1l (ENSPEMG00000012428)	ENSPEMG00000028722	Zbtb2 (ENSPEMG00000028248)	Rmnd1 (ENSPEMG00000014544)	Armt1 (ENSPEMG00000027664)	Ccdc170 (ENSPEMG00000018858)	ENSPEMG00000028412	Esr1 (ENSPEMG00000012747)	ENSPEMG00000000704	ENSPEMG00000029017	ENSPEMG00000013933	ENSPEMG00000007014	Myct1 (ENSPEMG00000016041)	Vip (ENSPEMG00000007974)	ENSPEMG00000005147 #22	Fbxo5 (ENSPEMG00000017534)	Mtrf1l (ENSPEMG00000018112)	Rgs17 (ENSPEMG00000002088)	Oprm1 (ENSPEMG00000013691)	Ipcef1 (ENSPEMG00000017460)	Cnksr3 (ENSPEMG00000009492)	Scaf8 (ENSPEMG00000010531)	Tiam2 (ENSPEMG00000019186)	Tfb1m (ENSPEMG00000010410)	ENSPEMG00000030418	Nox3 (ENSPEMG00000010502)	ENSPEMG00000014483	Arid1b (ENSPEMG00000008950)	Tmem242 (ENSPEMG00000016796)	Zdhhc14 (ENSPEMG00000019121)
Northern American deer mouse	MODERN SPECIES	21	Garin3 (ENSPEMG00000007819)	Itk (ENSPEMG00000014168)	Fndc9 (ENSPEMG00000030039)	Cyfip2 (ENSPEMG00000013244)	Nipal4 (ENSPEMG00000030993)	Adam19 (ENSPEMG00000011893)	Sox30 (ENSPEMG00000000554)	Thg1l (ENSPEMG00000022707)	Lsm11 (ENSPEMG00000028614)	Clint1 (ENSPEMG00000022779)	Ebf1 (ENSPEMG00000022652)	Rnf145 (ENSPEMG00000016589)	ENSPEMG00000028711	Ublcp1 (ENSPEMG00000014160)	Il12b (ENSPEMG00000015420)	ENSPEMG00000018217 #22	ENSPEMG00000012981	Adra1b (ENSPEMG00000018698)	Ttc1 (ENSPEMG00000018843)	Pwwp2a (ENSPEMG00000000774)	Fabp6 (ENSPEMG00000004485)	Ccnjl (ENSPEMG00000007234)	C1qtnf2 (ENSPEMG00000008301)	Slu7 (ENSPEMG00000016646)	ENSPEMG00000007013	Atp10b (ENSPEMG00000014226)	ENSPEMG00000029937	ENSPEMG00000029792	Gabrb2 (ENSPEMG00000017451)	Gabra6 (ENSPEMG00000000050)	ENSPEMG00000027790
Murinae	ANCESTRAL SPECIES	3	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Mus	ANCESTRAL SPECIES	4	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Ryukyu mouse	MODERN SPECIES	18	Slc51b (MGP_CAROLIEiJ_G0032361)	Rasl12 (MGP_CAROLIEiJ_G0032360)	Kbtbd13 (MGP_CAROLIEiJ_G0032359)	Ubap1l (MGP_CAROLIEiJ_G0032358) #7	Pdcd7 (MGP_CAROLIEiJ_G0032357) #8	Clpx (MGP_CAROLIEiJ_G0032356) #9	MGP_CAROLIEiJ_G0032355	Parp16 (MGP_CAROLIEiJ_G0032354) #11	Igdcc3 (MGP_CAROLIEiJ_G0032353) #12	Igdcc4 (MGP_CAROLIEiJ_G0032352) #13	Dpp8 (MGP_CAROLIEiJ_G0032351) #14	Hacd3 (MGP_CAROLIEiJ_G0032350) #15	Ints14 (MGP_CAROLIEiJ_G0032349) #16	Slc24a1 (MGP_CAROLIEiJ_G0032348) #17	Dennd4a (MGP_CAROLIEiJ_G0032347) #21	Rab11a (MGP_CAROLIEiJ_G0032346) #22	Megf11 (MGP_CAROLIEiJ_G0032345) #24	Dis3l (MGP_CAROLIEiJ_G0032344) #25	Tipin (MGP_CAROLIEiJ_G0032343) #26	MGP_CAROLIEiJ_G0032342	Map2k1 (MGP_CAROLIEiJ_G0032341) #27	Snapc5 (MGP_CAROLIEiJ_G0032340) #28	Rpl4 (MGP_CAROLIEiJ_G0032339) #29	Zwilch (MGP_CAROLIEiJ_G0032338) #30	Lctl (MGP_CAROLIEiJ_G0032337) #31	Smad6 (MGP_CAROLIEiJ_G0032336) #32	Smad3 (MGP_CAROLIEiJ_G0032335) #33	Aagab (MGP_CAROLIEiJ_G0032334) #34	Iqch (MGP_CAROLIEiJ_G0032333) #35	2300009A05Rik (MGP_CAROLIEiJ_G0032332)	Map2k5 (MGP_CAROLIEiJ_G0032331)
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Mouse	MODERN SPECIES	18	Slc51b (ENSMUSG00000053862)	Rasl12 (ENSMUSG00000041696)	Kbtbd13 (ENSMUSG00000054978)	Ubap1l (ENSMUSG00000086228) #7	Pdcd7 (ENSMUSG00000041837) #8	Clpx (ENSMUSG00000015357) #9	Cilp (ENSMUSG00000042254) #10	Parp16 (ENSMUSG00000032392) #11	Igdcc3 (ENSMUSG00000032394) #12	Igdcc4 (ENSMUSG00000032816) #13	Dpp8 (ENSMUSG00000032393) #14	Hacd3 (ENSMUSG00000033629) #15	Ints14 (ENSMUSG00000034263) #16	Slc24a1 (ENSMUSG00000034452) #17	Dennd4a (ENSMUSG00000053641) #21	Rab11a (ENSMUSG00000004771) #22	Megf11 (ENSMUSG00000036466) #24	Dis3l (ENSMUSG00000032396) #25	Tipin (ENSMUSG00000032397) #26	Uchl4 (ENSMUSG00000035337)	Map2k1 (ENSMUSG00000004936) #27	Snapc5 (ENSMUSG00000032398) #28	Rpl4 (ENSMUSG00000032399) #29	Zwilch (ENSMUSG00000032400) #30	Lctl (ENSMUSG00000032401) #31	Smad6 (ENSMUSG00000036867) #32	Smad3 (ENSMUSG00000032402) #33	Aagab (ENSMUSG00000037257) #34	Iqch (ENSMUSG00000037801) #35	2300009A05Rik (ENSMUSG00000032403)	Map2k5 (ENSMUSG00000058444)
Mus_C	ANCESTRAL SPECIES	8	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000154925.c.a	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Steppe mouse	MODERN SPECIES	3365	Kbtbd13 (ENSMSIG00000005647)	ENSMSIG00000005605 #7	Pdcd7 (ENSMSIG00000005596) #8	ENSMSIG00000005574	ENSMSIG00000005568	Clpx (ENSMSIG00000005427) #9	Cilp (ENSMSIG00000005391) #10	Parp16 (ENSMSIG00000005362) #11	Igdcc3 (ENSMSIG00000005288) #12	Igdcc4 (ENSMSIG00000005197) #13	Dpp8 (ENSMSIG00000005153) #14	Hacd3 (ENSMSIG00000005101) #15	Ints14 (ENSMSIG00000005077) #16	Slc24a1 (ENSMSIG00000005039) #17	Dennd4a (ENSMSIG00000004975) #21	Rab11a (ENSMSIG00000004938) #22	Megf11 (ENSMSIG00000004481) #24	Dis3l (ENSMSIG00000004353) #25	Tipin (ENSMSIG00000004296) #26	Uchl4 (ENSMSIG00000004289)	Map2k1 (ENSMSIG00000004246) #27	Snapc5 (ENSMSIG00000004231) #28	Rpl4 (ENSMSIG00000004124) #29	Zwilch (ENSMSIG00000003872) #30	Lctl (ENSMSIG00000003776) #31	ENSMSIG00000003769	ENSMSIG00000003749	Smad6 (ENSMSIG00000003718) #32	ENSMSIG00000003710	Smad3 (ENSMSIG00000003679) #33	Aagab (ENSMSIG00000003642) #34
spretus	MODERN SPECIES	18	Slc51b (MGP_SPRETEiJ_G0033500)	Rasl12 (MGP_SPRETEiJ_G0033499)	Kbtbd13 (MGP_SPRETEiJ_G0033498)	Ubap1l (MGP_SPRETEiJ_G0033497) #7	Pdcd7 (MGP_SPRETEiJ_G0033496) #8	Clpx (MGP_SPRETEiJ_G0033495) #9	Cilp (MGP_SPRETEiJ_G0033494) #10	Parp16 (MGP_SPRETEiJ_G0033493) #11	Igdcc3 (MGP_SPRETEiJ_G0033492) #12	Igdcc4 (MGP_SPRETEiJ_G0033491) #13	Dpp8 (MGP_SPRETEiJ_G0033490) #14	Hacd3 (MGP_SPRETEiJ_G0033489) #15	Ints14 (MGP_SPRETEiJ_G0033488) #16	Slc24a1 (MGP_SPRETEiJ_G0033487) #17	Dennd4a (MGP_SPRETEiJ_G0033486) #21	Rab11a (MGP_SPRETEiJ_G0033485) #22	Megf11 (MGP_SPRETEiJ_G0033484) #24	Dis3l (MGP_SPRETEiJ_G0033483) #25	Tipin (MGP_SPRETEiJ_G0033482) #26	MGP_SPRETEiJ_G0033481	Map2k1 (MGP_SPRETEiJ_G0033480) #27	Snapc5 (MGP_SPRETEiJ_G0033479) #28	Rpl4 (MGP_SPRETEiJ_G0033478) #29	Zwilch (MGP_SPRETEiJ_G0033477) #30	Lctl (MGP_SPRETEiJ_G0033476) #31	Smad6 (MGP_SPRETEiJ_G0033475) #32	Smad3 (MGP_SPRETEiJ_G0033474) #33	Aagab (MGP_SPRETEiJ_G0033473) #34	Iqch (MGP_SPRETEiJ_G0033472) #35	2300009A05Rik (MGP_SPRETEiJ_G0033471)	Map2k5 (MGP_SPRETEiJ_G0033470)
Shrew mouse	MODERN SPECIES	1	Slc51b (MGP_PahariEiJ_G0015226)	Rasl12 (MGP_PahariEiJ_G0015225)	Kbtbd13 (MGP_PahariEiJ_G0015224)	Ubap1l (MGP_PahariEiJ_G0015223) #7	Pdcd7 (MGP_PahariEiJ_G0015222) #8	Clpx (MGP_PahariEiJ_G0015221) #9	MGP_PahariEiJ_G0015220	Parp16 (MGP_PahariEiJ_G0015219) #11	MGP_PahariEiJ_G0015218 #12	Igdcc4 (MGP_PahariEiJ_G0015217) #13	Dpp8 (MGP_PahariEiJ_G0015216) #14	Hacd3 (MGP_PahariEiJ_G0015215) #15	Ints14 (MGP_PahariEiJ_G0015214) #16	Slc24a1 (MGP_PahariEiJ_G0015213) #17	Dennd4a (MGP_PahariEiJ_G0015212) #21	Rab11a (MGP_PahariEiJ_G0015211) #22	Megf11 (MGP_PahariEiJ_G0015210) #24	Dis3l (MGP_PahariEiJ_G0015209) #25	Tipin (MGP_PahariEiJ_G0015208) #26	Map2k1 (MGP_PahariEiJ_G0015207) #27	Snapc5 (MGP_PahariEiJ_G0015206) #28	Rpl4 (MGP_PahariEiJ_G0015205) #29	Zwilch (MGP_PahariEiJ_G0015204) #30	Smad6 (MGP_PahariEiJ_G0015202) #32	Smad3 (MGP_PahariEiJ_G0015201) #33	Aagab (MGP_PahariEiJ_G0015200) #34	Iqch (MGP_PahariEiJ_G0015199) #35	2300009A05Rik (MGP_PahariEiJ_G0015198)	Map2k5 (MGP_PahariEiJ_G0015197)	Skor1 (MGP_PahariEiJ_G0015196)	Pias1 (MGP_PahariEiJ_G0015195)
Rat	DUPLICATION
Rat	MODERN SPECIES	18	AABR07070456.1 (ENSRNOG00000014383)	Ubap1l (ENSRNOG00000050979) #7	Pdcd7 (ENSRNOG00000014340) #8	Clpx (ENSRNOG00000030225) #9	Cilp (ENSRNOG00000029911) #10	Parp16 (ENSRNOG00000029127) #11	ENSRNOG00000063066	Igdcc3 (ENSRNOG00000030800) #12	Igdcc4 (ENSRNOG00000033496) #13	Dpp8 (ENSRNOG00000019105) #14	Hacd3 (ENSRNOG00000030232) #15	Ints14 (ENSRNOG00000012469) #16	Slc24a1 (ENSRNOG00000052051) #17	Dennd4a (ENSRNOG00000011739) #21	LOC120094392 (ENSRNOG00000071140)	Rab11a (ENSRNOG00000011302) #22	Megf11 (ENSRNOG00000010634) #24	Dis3l (ENSRNOG00000010537) #25	Tipin (ENSRNOG00000043068) #26	Map2k1 (ENSRNOG00000010176) #27	Rpl4 (ENSRNOG00000009378) #29	Zwilch (ENSRNOG00000009303) #30	Lctl (ENSRNOG00000009193) #31	Smad6 (ENSRNOG00000009173) #32	Smad3 (ENSRNOG00000008620) #33	Aagab (ENSRNOG00000008424) #34	Iqch (ENSRNOG00000008353) #35	C8h15orf61 (ENSRNOG00000008340)	AC132740.1 (ENSRNOG00000054780)	Map2k5 (ENSRNOG00000007926)	Skor1 (ENSRNOG00000013959)
Rat	MODERN SPECIES	1	Krt13 (ENSRNOG00000014070)	Krt36 (ENSRNOG00000031805)	Krt35 (ENSRNOG00000013754)	Krt32 (ENSRNOG00000013611)	Krt31 (ENSRNOG00000030344)	Krt34 (ENSRNOG00000051302)	Krt33b (ENSRNOG00000068212)	Krt33a (ENSRNOG00000062912)	Krtap17-1 (ENSRNOG00000042473)	Krtap16-1 (ENSRNOG00000070593)	Krtap29-1 (ENSRNOG00000067188)	LOC100364862 (ENSRNOG00000063867)	Krtap31-1 (ENSRNOG00000036838)	Krtap31-2 (ENSRNOG00000042736)	LOC680428 (ENSRNOG00000042701)	ENSRNOG00000066770 #22	LOC100910814 (ENSRNOG00000064993)	Krtap9-7 (ENSRNOG00000026803)	Krtap4-3 (ENSRNOG00000034110)	LOC100909494 (ENSRNOG00000065268)	AABR07030464.1 (ENSRNOG00000012973)	AC099183.3 (ENSRNOG00000058172)	Gm11555 (ENSRNOG00000066540)	ENSRNOG00000068861	Krtap2-4 (ENSRNOG00000061130)	Krtap2-4l (ENSRNOG00000060847)	Krtap2-1 (ENSRNOG00000065269)	RGD1561684 (ENSRNOG00000063772)	LOC100365588 (ENSRNOG00000053283)	Krtap1-3 (ENSRNOG00000052388)	Krtap1-1 (ENSRNOG00000012955)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Hystricomorpha	ANCESTRAL SPECIES	36	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.vb #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	4	PRLHR (ENSHGLG00000009873)	CACUL1 (ENSHGLG00000009961)	ENSHGLG00000011185	NANOS1 (ENSHGLG00000045577)	EIF3A (ENSHGLG00000013260)	DENND10 (ENSHGLG00000010220)	ENSHGLG00000009711	ENSHGLG00000011210	ENSHGLG00000038210	GRK5 (ENSHGLG00000050923)	RGS10 (ENSHGLG00000037265)	ENSHGLG00000034213	TIAL1 (ENSHGLG00000013775)	ENSHGLG00000012192	BAG3 (ENSHGLG00000013505)	ENSHGLG00000042038 #22	INPP5F (ENSHGLG00000009930)	ENSHGLG00000011466	SEC23IP (ENSHGLG00000013752)	ENSHGLG00000045415	PLPP4 (ENSHGLG00000012927)	ENSHGLG00000044013	WDR11 (ENSHGLG00000010871)	ENSHGLG00000011201	ENSHGLG00000032507	ENSHGLG00000006514	ENSHGLG00000045128	ENSHGLG00000018201	NSMCE4A (ENSHGLG00000013057)	ENSHGLG00000035516	ENSHGLG00000014774
Naked mole-rat female	MODERN SPECIES	15	ENSHGLG00000048508	THAP7 (ENSHGLG00000038188)	LZTR1 (ENSHGLG00000000653)	AIFM3 (ENSHGLG00000001645)	CRKL (ENSHGLG00000044151)	SNAP29 (ENSHGLG00000047985)	ENSHGLG00000033418	ENSHGLG00000001184	ENSHGLG00000017122	CRYBB3 (ENSHGLG00000013224)	ENSHGLG00000006116	ENSHGLG00000011538	ENSHGLG00000048899	ENSHGLG00000013506	ENSHGLG00000017402	ENSHGLG00000042210 #22	ASPHD2 (ENSHGLG00000050850)	HPS4 (ENSHGLG00000006487)	SRRD (ENSHGLG00000007556)	TFIP11 (ENSHGLG00000008873)	TPST2 (ENSHGLG00000010327)	CRYBB1 (ENSHGLG00000010592)	CRYBA4 (ENSHGLG00000011408)	ENSHGLG00000047034	MN1 (ENSHGLG00000005808)	ENSHGLG00000006229	ENSHGLG00000035833	TTC28 (ENSHGLG00000007637)	CHEK2 (ENSHGLG00000011056)	HSCB (ENSHGLG00000006538)	CCDC117 (ENSHGLG00000041095)
Naked mole-rat female	MODERN SPECIES	19	ENSHGLG00000008881	ENSHGLG00000007567	UBAP1L (ENSHGLG00000005478) #7	PDCD7 (ENSHGLG00000005335) #8	CLPX (ENSHGLG00000008735) #9	CILP (ENSHGLG00000011932) #10	PARP16 (ENSHGLG00000010657) #11	IGDCC3 (ENSHGLG00000006674) #12	IGDCC4 (ENSHGLG00000017462) #13	DPP8 (ENSHGLG00000014997) #14	HACD3 (ENSHGLG00000011870) #15	INTS14 (ENSHGLG00000010722) #16	SLC24A1 (ENSHGLG00000008872) #17	DENND4A (ENSHGLG00000009810) #21	ENSHGLG00000044288	RAB11A (ENSHGLG00000048551) #22	MEGF11 (ENSHGLG00000011012) #24	ENSHGLG00000007770 #25	ENSHGLG00000005971 #26	ENSHGLG00000048822	ENSHGLG00000010036 #27	ENSHGLG00000040904 #28	ENSHGLG00000008054 #29	ZWILCH (ENSHGLG00000016059) #30	LCTL (ENSHGLG00000015669) #31	SMAD6 (ENSHGLG00000008453) #32	SMAD3 (ENSHGLG00000048787) #33	AAGAB (ENSHGLG00000038898) #34	ENSHGLG00000026352 #35	C15orf61 (ENSHGLG00000038870)	MAP2K5 (ENSHGLG00000006627)
Hystricomorpha_a	ANCESTRAL SPECIES	38	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.vb #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Guinea pig	MODERN SPECIES	101	MYO1E (ENSCPOG00000002570)	CCNB2 (ENSCPOG00000026977)	RNF111 (ENSCPOG00000010550)	SLTM (ENSCPOG00000026109)	MINDY2 (ENSCPOG00000002287)	CLPX (ENSCPOG00000003391) #9	CILP (ENSCPOG00000036223) #10	PARP16 (ENSCPOG00000025232) #11	IGDCC3 (ENSCPOG00000006751) #12	IGDCC4 (ENSCPOG00000004519) #13	DPP8 (ENSCPOG00000014124) #14	HACD3 (ENSCPOG00000013593) #15	INTS14 (ENSCPOG00000000764) #16	SLC24A1 (ENSCPOG00000013596) #17	DENND4A (ENSCPOG00000013602) #21	RAB11A (ENSCPOG00000037599) #22	MEGF11 (ENSCPOG00000006468) #24	DIS3L (ENSCPOG00000000250) #25	TIPIN (ENSCPOG00000000251) #26	MAP2K1 (ENSCPOG00000003053) #27	RPL4 (ENSCPOG00000003055) #29	ZWILCH (ENSCPOG00000001241) #30	LCTL (ENSCPOG00000001245) #31	ENSCPOG00000026722	ENSCPOG00000003533	ENSCPOG00000013176	ENSCPOG00000015403
Hystricomorpha_b	ANCESTRAL SPECIES	35	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.vb #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Long-tailed chinchilla	MODERN SPECIES	157	SLC51B (ENSCLAG00000011594)	RASL12 (ENSCLAG00000011152)	KBTBD13 (ENSCLAG00000018082)	UBAP1L (ENSCLAG00000010285) #7	PDCD7 (ENSCLAG00000007922) #8	CLPX (ENSCLAG00000016601) #9	CILP (ENSCLAG00000014495) #10	PARP16 (ENSCLAG00000012092) #11	IGDCC3 (ENSCLAG00000010244) #12	IGDCC4 (ENSCLAG00000007751) #13	DPP8 (ENSCLAG00000014937) #14	HACD3 (ENSCLAG00000010725) #15	INTS14 (ENSCLAG00000009395) #16	SLC24A1 (ENSCLAG00000013073) #17	DENND4A (ENSCLAG00000007003) #21	RAB11A (ENSCLAG00000007435) #22	MEGF11 (ENSCLAG00000013146) #24	DIS3L (ENSCLAG00000005741) #25	TIPIN (ENSCLAG00000004924) #26	MAP2K1 (ENSCLAG00000013042) #27	SNAPC5 (ENSCLAG00000011660) #28	RPL4 (ENSCLAG00000010827) #29	ZWILCH (ENSCLAG00000010124) #30	LCTL (ENSCLAG00000004564) #31	ENSCLAG00000005550 #32	SMAD3 (ENSCLAG00000005027) #33	AAGAB (ENSCLAG00000008364) #34	IQCH (ENSCLAG00000011031) #35	C15orf61 (ENSCLAG00000008894)	MAP2K5 (ENSCLAG00000005277)	SKOR1 (ENSCLAG00000007488)
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	67	ENSODEG00000016276 #7	PDCD7 (ENSODEG00000016758) #8	ENSODEG00000016607	CLPX (ENSODEG00000016361) #9	CILP (ENSODEG00000016085) #10	ENSODEG00000020368	PARP16 (ENSODEG00000016601) #11	IGDCC3 (ENSODEG00000016285) #12	IGDCC4 (ENSODEG00000016455) #13	DPP8 (ENSODEG00000016356) #14	HACD3 (ENSODEG00000016975) #15	INTS14 (ENSODEG00000017006) #16	SLC24A1 (ENSODEG00000016047) #17	ENSODEG00000016544 #21	ENSODEG00000016435	ENSODEG00000016878 #22	MEGF11 (ENSODEG00000015967) #24	DIS3L (ENSODEG00000015811) #25	MAP2K1 (ENSODEG00000016739) #27	ENSODEG00000016495 #29	ZWILCH (ENSODEG00000016374) #30	LCTL (ENSODEG00000016271) #31	ENSODEG00000020317	SMAD6 (ENSODEG00000016272) #32	SMAD3 (ENSODEG00000015739) #33	ENSODEG00000015886 #34	ENSODEG00000020336	IQCH (ENSODEG00000016134) #35	C15orf61 (ENSODEG00000016721)	ENSODEG00000016511	MAP2K5 (ENSODEG00000015607)
Degu	MODERN SPECIES	88	DENND5B (ENSODEG00000004914)	ENSODEG00000005420	ENSODEG00000005301	CAPRIN2 (ENSODEG00000005454)	ENSODEG00000004763	CAPS2 (ENSODEG00000005006)	KCNC2 (ENSODEG00000004528)	ENSODEG00000004940	TPH2 (ENSODEG00000005879)	TBC1D15 (ENSODEG00000005472)	ENSODEG00000019110	TMEM19 (ENSODEG00000007134)	THAP2 (ENSODEG00000007099)	ENSODEG00000007051	ENSODEG00000006640	ENSODEG00000005318 #22	LGR5 (ENSODEG00000005026)	ENSODEG00000005914	PTPRR (ENSODEG00000004892)	PTPRB (ENSODEG00000005212)	ENSODEG00000004686	KCNMB4 (ENSODEG00000004677)	CNOT2 (ENSODEG00000004532)	ENSODEG00000004175	BEST3 (ENSODEG00000004391)	LRRC10 (ENSODEG00000004356)	FRS2 (ENSODEG00000004174)	ENSODEG00000019177	ENSODEG00000005231	ENSODEG00000005050	LYZ (ENSODEG00000004742)
Degu	MODERN SPECIES	331														ENSODEG00000002423	ENSODEG00000002362	ENSODEG00000002343 #22	ENSODEG00000002260	ENSODEG00000002224	ENSODEG00000002218
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Eurasian red squirrel	MODERN SPECIES	11	KBTBD13 (ENSSVLG00005022826)	UBAP1L (ENSSVLG00005022843) #7	PDCD7 (ENSSVLG00005022889) #8	CLPX (ENSSVLG00005022929) #9	CILP (ENSSVLG00005022969) #10	PARP16 (ENSSVLG00005023083) #11	ENSSVLG00005023161	IGDCC3 (ENSSVLG00005023208) #12	IGDCC4 (ENSSVLG00005023281) #13	DPP8 (ENSSVLG00005023347) #14	ENSSVLG00005023642	HACD3 (ENSSVLG00005023708) #15	INTS14 (ENSSVLG00005023820) #16	SLC24A1 (ENSSVLG00005023979) #17	DENND4A (ENSSVLG00005024160) #21	RAB11A (ENSSVLG00005024246) #22	MEGF11 (ENSSVLG00005024351) #24	DIS3L (ENSSVLG00005024622) #25	TIPIN (ENSSVLG00005024668) #26	MAP2K1 (ENSSVLG00005024707) #27	SNAPC5 (ENSSVLG00005024729) #28	ENSSVLG00005024744 #29	ZWILCH (ENSSVLG00005024833) #30	LCTL (ENSSVLG00005024912) #31	SMAD6 (ENSSVLG00005024946) #32	ENSSVLG00005024968	SMAD3 (ENSSVLG00005024991) #33	AAGAB (ENSSVLG00005025018) #34	IQCH (ENSSVLG00005025085) #35	C15orf61 (ENSSVLG00005006592)	MAP2K5 (ENSSVLG00005006656)
Marmotini	ANCESTRAL SPECIES	9	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Alpin marmot	MODERN SPECIES	7	ENSMMMG00000007278	RASL12 (ENSMMMG00000007263)	KBTBD13 (ENSMMMG00000007256)	UBAP1L (ENSMMMG00000007244) #7	CLPX (ENSMMMG00000007193) #9	CILP (ENSMMMG00000007122) #10	PARP16 (ENSMMMG00000007101) #11	IGDCC3 (ENSMMMG00000007025) #12	IGDCC4 (ENSMMMG00000006948) #13	DPP8 (ENSMMMG00000006899) #14	HACD3 (ENSMMMG00000006884) #15	INTS14 (ENSMMMG00000006868) #16	SLC24A1 (ENSMMMG00000006817) #17	DENND4A (ENSMMMG00000006769) #21	ENSMMMG00000006762	RAB11A (ENSMMMG00000006747) #22	MEGF11 (ENSMMMG00000006311) #24	DIS3L (ENSMMMG00000006220) #25	TIPIN (ENSMMMG00000006196) #26	MAP2K1 (ENSMMMG00000006173) #27	SNAPC5 (ENSMMMG00000006163) #28	RPL4 (ENSMMMG00000006109) #29	ENSMMMG00000006104	ZWILCH (ENSMMMG00000006077) #30	LCTL (ENSMMMG00000006061) #31	SMAD6 (ENSMMMG00000006032) #32	ENSMMMG00000006027	SMAD3 (ENSMMMG00000005977) #33	AAGAB (ENSMMMG00000005970) #34	IQCH (ENSMMMG00000005869) #35	ENSMMMG00000005844
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Squirrel	MODERN SPECIES	71	RASL12 (ENSSTOG00000024973)	KBTBD13 (ENSSTOG00000010131)	UBAP1L (ENSSTOG00000019679) #7	PDCD7 (ENSSTOG00000003742) #8	CLPX (ENSSTOG00000003763) #9	CILP (ENSSTOG00000026112) #10	PARP16 (ENSSTOG00000008979) #11	IGDCC3 (ENSSTOG00000023391) #12	IGDCC4 (ENSSTOG00000002189) #13	DPP8 (ENSSTOG00000002203) #14	ENSSTOG00000025872	HACD3 (ENSSTOG00000002211) #15	INTS14 (ENSSTOG00000002217) #16	SLC24A1 (ENSSTOG00000002228) #17	DENND4A (ENSSTOG00000026966) #21	RAB11A (ENSSTOG00000015255) #22	MEGF11 (ENSSTOG00000015258) #24	DIS3L (ENSSTOG00000009158) #25	TIPIN (ENSSTOG00000009182) #26	MAP2K1 (ENSSTOG00000009190) #27	SNAPC5 (ENSSTOG00000009201) #28	RPL4 (ENSSTOG00000009221) #29	ZWILCH (ENSSTOG00000009607) #30	LCTL (ENSSTOG00000028073) #31	SMAD6 (ENSSTOG00000000696) #32	SMAD3 (ENSSTOG00000010286) #33	AAGAB (ENSSTOG00000010291) #34	IQCH (ENSSTOG00000010299) #35	C15orf61 (ENSSTOG00000010312)	MAP2K5 (ENSSTOG00000010318)	SKOR1 (ENSSTOG00000002675)
Arctic ground squirrel	MODERN SPECIES	33	SLC51B (ENSUPAG00010000624)	RASL12 (ENSUPAG00010000634)	KBTBD13 (ENSUPAG00010000664)	UBAP1L (ENSUPAG00010000672) #7	PDCD7 (ENSUPAG00010000682) #8	CLPX (ENSUPAG00010000698) #9	CILP (ENSUPAG00010000774) #10	PARP16 (ENSUPAG00010000785) #11	IGDCC3 (ENSUPAG00010000811) #12	IGDCC4 (ENSUPAG00010000872) #13	DPP8 (ENSUPAG00010000912) #14	HACD3 (ENSUPAG00010001090) #15	INTS14 (ENSUPAG00010001105) #16	SLC24A1 (ENSUPAG00010001132) #17	DENND4A (ENSUPAG00010001204) #21	RAB11A (ENSUPAG00010001338) #22	MEGF11 (ENSUPAG00010001370) #24	DIS3L (ENSUPAG00010001911) #25
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154914 #22
Common shrew	MODERN SPECIES	365																ENSSARG00000006285 #22
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942
Carnivora	ANCESTRAL SPECIES		ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00910000146962
Felidae	ANCESTRAL SPECIES	1	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00910000146962
Panthera	ANCESTRAL SPECIES	3	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000063881.a.b	ENSGT00940000154450	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00910000146962
Tiger	MODERN SPECIES	204	SLC51B (ENSPTIG00000021613)	RASL12 (ENSPTIG00000021753)	ENSPTIG00000005399	UBAP1L (ENSPTIG00000021877) #7	CLPX (ENSPTIG00000022022) #9	CILP (ENSPTIG00000001633) #10	PARP16 (ENSPTIG00000004433) #11	IGDCC3 (ENSPTIG00000005842) #12	IGDCC4 (ENSPTIG00000006772) #13	DPP8 (ENSPTIG00000008731) #14	ENSPTIG00000012013	HACD3 (ENSPTIG00000012698) #15	INTS14 (ENSPTIG00000014987) #16	SLC24A1 (ENSPTIG00000017335) #17	DENND4A (ENSPTIG00000018874) #21	RAB11A (ENSPTIG00000021637) #22	MEGF11 (ENSPTIG00000001273) #24	DIS3L (ENSPTIG00000009042) #25	ENSPTIG00000009826	MAP2K1 (ENSPTIG00000010070) #27	SNAPC5 (ENSPTIG00000010493) #28	ENSPTIG00000010784 #29	ZWILCH (ENSPTIG00000011456) #30	LCTL (ENSPTIG00000012036) #31	SMAD3 (ENSPTIG00000012606) #33	AAGAB (ENSPTIG00000013747) #34	IQCH (ENSPTIG00000014096) #35	ENSPTIG00000015816	MAP2K5 (ENSPTIG00000016073)	ENSPTIG00000017654	PIAS1 (ENSPTIG00000017759)
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000063881.a.b	ENSGT00940000154450	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00860000136046	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00910000146962
lion	MODERN SPECIES	6	RASL12 (ENSPLOG00000010906)	KBTBD13 (ENSPLOG00000010867)	UBAP1L (ENSPLOG00000010817) #7	PDCD7 (ENSPLOG00000010782) #8	CLPX (ENSPLOG00000010665) #9	CILP (ENSPLOG00000010583) #10	PARP16 (ENSPLOG00000010532) #11	IGDCC3 (ENSPLOG00000010421) #12	IGDCC4 (ENSPLOG00000010305) #13	DPP8 (ENSPLOG00000010171) #14	ENSPLOG00000010122	HACD3 (ENSPLOG00000009943) #15	INTS14 (ENSPLOG00000009755) #16	SLC24A1 (ENSPLOG00000009464) #17	DENND4A (ENSPLOG00000008717) #21	RAB11A (ENSPLOG00000008488) #22	MEGF11 (ENSPLOG00000008100) #24	DIS3L (ENSPLOG00000007929) #25	TIPIN (ENSPLOG00000007894) #26	MAP2K1 (ENSPLOG00000007836) #27	SNAPC5 (ENSPLOG00000007792) #28	RPL4 (ENSPLOG00000007707) #29	ZWILCH (ENSPLOG00000007600) #30	LCTL (ENSPLOG00000007528) #31	SMAD6 (ENSPLOG00000007495) #32	ENSPLOG00000007093	SMAD3 (ENSPLOG00000007068) #33	AAGAB (ENSPLOG00000007046) #34	IQCH (ENSPLOG00000006897) #35	C15orf61 (ENSPLOG00000006817)	MAP2K5 (ENSPLOG00000006228)
leopard	MODERN SPECIES	7	RASL12 (ENSPPRG00000024033)	KBTBD13 (ENSPPRG00000014815)	UBAP1L (ENSPPRG00000023664) #7	PDCD7 (ENSPPRG00000023540) #8	CLPX (ENSPPRG00000023475) #9	CILP (ENSPPRG00000023132) #10	PARP16 (ENSPPRG00000022890) #11	IGDCC3 (ENSPPRG00000022706) #12	IGDCC4 (ENSPPRG00000000219) #13	DPP8 (ENSPPRG00000001353) #14	ENSPPRG00000001945	HACD3 (ENSPPRG00000003107) #15	INTS14 (ENSPPRG00000003935) #16	SLC24A1 (ENSPPRG00000006682) #17	DENND4A (ENSPPRG00000009637) #21	RAB11A (ENSPPRG00000010471) #22	MEGF11 (ENSPPRG00000014069) #24	DIS3L (ENSPPRG00000019912) #25	TIPIN (ENSPPRG00000022554) #26	MAP2K1 (ENSPPRG00000022608) #27	SNAPC5 (ENSPPRG00000000465) #28	ENSPPRG00000000610 #29	ZWILCH (ENSPPRG00000001390) #30	LCTL (ENSPPRG00000002315) #31	SMAD6 (ENSPPRG00000002502) #32	SMAD3 (ENSPPRG00000003306) #33	AAGAB (ENSPPRG00000003564) #34	IQCH (ENSPPRG00000005647) #35	C15orf61 (ENSPPRG00000005929)	ENSPPRG00000005987	MAP2K5 (ENSPPRG00000006923)
Cat	MODERN SPECIES	237	SLC51B (ENSFCAG00000026998)	RASL12 (ENSFCAG00000011458)	KBTBD13 (ENSFCAG00000030165)	UBAP1L (ENSFCAG00000044872) #7	PDCD7 (ENSFCAG00000040312) #8	CLPX (ENSFCAG00000026710) #9	CILP (ENSFCAG00000011462) #10	PARP16 (ENSFCAG00000011463) #11	IGDCC3 (ENSFCAG00000011465) #12	IGDCC4 (ENSFCAG00000011466) #13	DPP8 (ENSFCAG00000025415) #14	HACD3 (ENSFCAG00000008691) #15	INTS14 (ENSFCAG00000008692) #16	SLC24A1 (ENSFCAG00000008693) #17	DENND4A (ENSFCAG00000008694) #21	RAB11A (ENSFCAG00000030174) #22	MEGF11 (ENSFCAG00000003091) #24	DIS3L (ENSFCAG00000029869) #25	TIPIN (ENSFCAG00000035191) #26	MAP2K1 (ENSFCAG00000028389) #27	SNAPC5 (ENSFCAG00000012291) #28	RPL4 (ENSFCAG00000012293) #29	ZWILCH (ENSFCAG00000012294) #30	LCTL (ENSFCAG00000012298) #31	SMAD6 (ENSFCAG00000012300) #32	SMAD3 (ENSFCAG00000027081) #33	AAGAB (ENSFCAG00000004418) #34	IQCH (ENSFCAG00000004419) #35	CB3H15orf61 (ENSFCAG00000040546)	MAP2K5 (ENSFCAG00000004420)	SKOR1 (ENSFCAG00000043709)
Caniformia	ANCESTRAL SPECIES	12	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Ursidae	ANCESTRAL SPECIES	21	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B.p #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Ursus	ANCESTRAL SPECIES	37	ENSGT00390000017828	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B.p #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Polar bear	MODERN SPECIES	320	SPG21 (ENSUMAG00000012587)	MTFMT (ENSUMAG00000012561)	SLC51B (ENSUMAG00000012546)	RASL12 (ENSUMAG00000012538)	ENSUMAG00000012533	CLPX (ENSUMAG00000012513) #9	CILP (ENSUMAG00000012508) #10	PARP16 (ENSUMAG00000012504) #11	IGDCC3 (ENSUMAG00000012461) #12	ENSUMAG00000012451 #13	DPP8 (ENSUMAG00000012441) #14	HACD3 (ENSUMAG00000012379) #15	INTS14 (ENSUMAG00000012368) #16	SLC24A1 (ENSUMAG00000012325) #17	DENND4A (ENSUMAG00000012290) #21	RAB11A (ENSUMAG00000012273) #22	MEGF11 (ENSUMAG00000012242) #24	DIS3L (ENSUMAG00000012227) #25	TIPIN (ENSUMAG00000012215) #26	MAP2K1 (ENSUMAG00000012208) #27	RPL4 (ENSUMAG00000012178) #29	ZWILCH (ENSUMAG00000012145) #30	LCTL (ENSUMAG00000012072) #31	ENSUMAG00000012057 #33	AAGAB (ENSUMAG00000012048) #34	IQCH (ENSUMAG00000012020) #35	C15orf61 (ENSUMAG00000012016)	MAP2K5 (ENSUMAG00000011992)	ENSUMAG00000011983	PIAS1 (ENSUMAG00000011980)	CALML4 (ENSUMAG00000011979)
American black bear	MODERN SPECIES	5656																RAB11A (ENSUAMG00000026548) #22	MEGF11 (ENSUAMG00000026546) #24
Giant Panda	MODERN SPECIES	15	ENSAMEG00000002772	RASL12 (ENSAMEG00000029508)	KBTBD13 (ENSAMEG00000025813)	UBAP1L (ENSAMEG00000030738) #7	PDCD7 (ENSAMEG00000027984) #8	CLPX (ENSAMEG00000002810) #9	CILP (ENSAMEG00000002854) #10	PARP16 (ENSAMEG00000002861) #11	IGDCC3 (ENSAMEG00000002876) #12	IGDCC4 (ENSAMEG00000002889) #13	DPP8 (ENSAMEG00000002924) #14	HACD3 (ENSAMEG00000002983) #15	INTS14 (ENSAMEG00000003002) #16	SLC24A1 (ENSAMEG00000003029) #17	DENND4A (ENSAMEG00000003046) #21	RAB11A (ENSAMEG00000003119) #22	MEGF11 (ENSAMEG00000003131) #24	DIS3L (ENSAMEG00000003166) #25	TIPIN (ENSAMEG00000027725) #26	MAP2K1 (ENSAMEG00000003218) #27	SNAPC5 (ENSAMEG00000003249) #28	ENSAMEG00000029170 #29	ZWILCH (ENSAMEG00000003251) #30	LCTL (ENSAMEG00000003300) #31	SMAD6 (ENSAMEG00000029979) #32	SMAD3 (ENSAMEG00000003318) #33	AAGAB (ENSAMEG00000028433) #34	IQCH (ENSAMEG00000005044) #35	C15orf61 (ENSAMEG00000029099)	MAP2K5 (ENSAMEG00000005013)	SKOR1 (ENSAMEG00000004996)
Mustelinae	ANCESTRAL SPECIES	66	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Ferret	MODERN SPECIES	228	MTFMT (ENSMPUG00000000527)	RASL12 (ENSMPUG00000000526)	KBTBD13 (ENSMPUG00000019445)	UBAP1L (ENSMPUG00000000525) #7	PDCD7 (ENSMPUG00000000523) #8	CLPX (ENSMPUG00000000518) #9	CILP (ENSMPUG00000000506) #10	PARP16 (ENSMPUG00000000505) #11	IGDCC3 (ENSMPUG00000000488) #12	IGDCC4 (ENSMPUG00000000484) #13	DPP8 (ENSMPUG00000000480) #14	HACD3 (ENSMPUG00000000475) #15	INTS14 (ENSMPUG00000000472) #16	SLC24A1 (ENSMPUG00000000468) #17	DENND4A (ENSMPUG00000000388) #21	RAB11A (ENSMPUG00000000387) #22	MEGF11 (ENSMPUG00000000383) #24	DIS3L (ENSMPUG00000000378) #25	TIPIN (ENSMPUG00000000365) #26	MAP2K1 (ENSMPUG00000000363) #27	SNAPC5 (ENSMPUG00000000356) #28	ENSMPUG00000000337 #29	ZWILCH (ENSMPUG00000000333) #30	LCTL (ENSMPUG00000000312) #31	ENSMPUG00000000309	SMAD6 (ENSMPUG00000000307) #32	SMAD3 (ENSMPUG00000000304) #33	AAGAB (ENSMPUG00000000292) #34	IQCH (ENSMPUG00000000289) #35	C15orf61 (ENSMPUG00000000287)	MAP2K5 (ENSMPUG00000000285)
American mink	MODERN SPECIES	46	RASL12 (ENSNVIG00000017710)	KBTBD13 (ENSNVIG00000017694)	UBAP1L (ENSNVIG00000017675) #7	PDCD7 (ENSNVIG00000017665) #8	CLPX (ENSNVIG00000017631) #9	CILP (ENSNVIG00000017597) #10	PARP16 (ENSNVIG00000017580) #11	ENSNVIG00000017573	IGDCC3 (ENSNVIG00000017539) #12	IGDCC4 (ENSNVIG00000017489) #13	DPP8 (ENSNVIG00000017340) #14	HACD3 (ENSNVIG00000017259) #15	CO044 (ENSNVIG00000017199) #16	SLC24A1 (ENSNVIG00000017089) #17	DENND4A (ENSNVIG00000016862) #21	RAB11A (ENSNVIG00000016821) #22	MEGF11 (ENSNVIG00000016583) #24	DIS3L (ENSNVIG00000016535) #25	TIPIN (ENSNVIG00000016513) #26	MAP2K1 (ENSNVIG00000016498) #27	SNAPC5 (ENSNVIG00000016483) #28	RPL4 (ENSNVIG00000016412) #29	ZWILC (ENSNVIG00000016326) #30	LCTL (ENSNVIG00000016282) #31	SMAD6 (ENSNVIG00000016271) #32	SMAD3 (ENSNVIG00000016249) #33	AAGAB (ENSNVIG00000016212) #34	IQCH (ENSNVIG00000016136) #35	MP2K5 (ENSNVIG00000015958)	SKOR1 (ENSNVIG00000015923)	PIAS1 (ENSNVIG00000015868)
Canidae	ANCESTRAL SPECIES	15	ENSGT00390000010409	ENSGT00940000160167.q	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00950000185603	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218.m #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00390000010409	ENSGT00940000160167.q	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.lc.a #29	ENSGT00390000013696 #30	ENSGT00950000185603	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218.m #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Dingo	MODERN SPECIES	205	ENSCAFG00020008821	KBTBD13 (ENSCAFG00020008818)	UBAP1L (ENSCAFG00020008809) #7	PDCD7 (ENSCAFG00020008800) #8	CLPX (ENSCAFG00020008792) #9	CILP (ENSCAFG00020008785) #10	ENSCAFG00020008780	PARP16 (ENSCAFG00020008773) #11	IGDCC3 (ENSCAFG00020008743) #12	IGDCC4 (ENSCAFG00020008701) #13	DPP8 (ENSCAFG00020008685) #14	HACD3 (ENSCAFG00020008678) #15	INTS14 (ENSCAFG00020008669) #16	SLC24A1 (ENSCAFG00020008562) #17	DENND4A (ENSCAFG00020008501) #21	RAB11A (ENSCAFG00020008478) #22	MEGF11 (ENSCAFG00020008443) #24	DIS3L (ENSCAFG00020008413) #25	TIPIN (ENSCAFG00020008398) #26	MAP2K1 (ENSCAFG00020008392) #27	SNAPC5 (ENSCAFG00020008387) #28	ENSCAFG00020008355 #29	ZWILCH (ENSCAFG00020008215) #30	LCTL (ENSCAFG00020008195) #31	SMAD6 (ENSCAFG00020008193) #32	SMAD3 (ENSCAFG00020008177) #33	ENSCAFG00020008170 #34	IQCH (ENSCAFG00020008118) #35	C15orf61 (ENSCAFG00020008094)	MAP2K5 (ENSCAFG00020008071)	SKOR1 (ENSCAFG00020008049)
Dog	MODERN SPECIES	23	SLC51B (ENSCAFG00845024623)	KBTBD13 (ENSCAFG00845024657)	PDCD7 (ENSCAFG00845024725) #8	UBAP1L (ENSCAFG00845024876) #7	CLPX (ENSCAFG00845024932) #9	CILP (ENSCAFG00845025013) #10	AVPI1 (ENSCAFG00845025073)	PARP16 (ENSCAFG00845025116) #11	IGDCC3 (ENSCAFG00845025254) #12	IGDCC4 (ENSCAFG00845025408) #13	DPP8 (ENSCAFG00845025611) #14	HACD3 (ENSCAFG00845025953) #15	INTS14 (ENSCAFG00845026081) #16	SLC24A1 (ENSCAFG00845026323) #17	DENND4A (ENSCAFG00845026536) #21	RAB11A (ENSCAFG00845027320) #22	ENSCAFG00845014976 #24	DIS3L (ENSCAFG00845015076) #25	TIPIN (ENSCAFG00845015229) #26	ENSCAFG00845015268	MAP2K1 (ENSCAFG00845015371) #27	SNAPC5 (ENSCAFG00845015512) #28	RPL4 (ENSCAFG00845015609) #29	ZWILCH (ENSCAFG00845015845) #30	ENSCAFG00845016122	LCTL (ENSCAFG00845016168) #31	SMAD6 (ENSCAFG00845016415) #32	SMAD3 (ENSCAFG00845016639) #33	AAGAB (ENSCAFG00845016886) #34	IQCH (ENSCAFG00845017088) #35	C15orf61 (ENSCAFG00845017380)
Red fox	MODERN SPECIES		MTFMT (ENSVVUG00000013827)	SLC51B (ENSVVUG00000013831)	RASL12 (ENSVVUG00000013838)	ENSVVUG00000013847	PDCD7 (ENSVVUG00000013851) #8	CLPX (ENSVVUG00000013882) #9	CILP (ENSVVUG00000014204) #10	PARP16 (ENSVVUG00000014214) #11	IGDCC3 (ENSVVUG00000014224) #12	IGDCC4 (ENSVVUG00000014242) #13	DPP8 (ENSVVUG00000014284) #14	HACD3 (ENSVVUG00000014290) #15	INTS14 (ENSVVUG00000014296) #16	SLC24A1 (ENSVVUG00000014313) #17	DENND4A (ENSVVUG00000014392) #21	RAB11A (ENSVVUG00000014435) #22	MEGF11 (ENSVVUG00000014448) #24	DIS3L (ENSVVUG00000014492) #25	TIPIN (ENSVVUG00000014501) #26	MAP2K1 (ENSVVUG00000014514) #27	SNAPC5 (ENSVVUG00000014527) #28	ENSVVUG00000014531 #29	ZWILCH (ENSVVUG00000014559) #30	ENSVVUG00000014578	LCTL (ENSVVUG00000014585) #31	ENSVVUG00000014612	ENSVVUG00000014615	SMAD6 (ENSVVUG00000014625) #32	SMAD3 (ENSVVUG00000014647) #33	AAGAB (ENSVVUG00000014658) #34	IQCH (ENSVVUG00000014665) #35
Laurasiatheria_c	DUPLICATION
Laurasiatheria_c	DUPLICATION
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914.db.a #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Chiroptera	ANCESTRAL SPECIES	17	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914.db.a #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914.db.a #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147041	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1052	KBTBD13 (ENSMLUG00000029350)	PDCD7 (ENSMLUG00000030414) #8	CLPX (ENSMLUG00000008769) #9	CILP (ENSMLUG00000008793) #10	ENSMLUG00000008817 #11	ENSMLUG00000008591	ENSMLUG00000028492	ENSMLUG00000028574	IGDCC3 (ENSMLUG00000000621) #12	IGDCC4 (ENSMLUG00000000632) #13	DPP8 (ENSMLUG00000009434) #14	ENSMLUG00000015087 #15	INTS14 (ENSMLUG00000015095) #16	SLC24A1 (ENSMLUG00000015104) #17	DENND4A (ENSMLUG00000015110) #21	ENSMLUG00000008820 #22	MEGF11 (ENSMLUG00000008226) #24	ENSMLUG00000022949 #25	MAP2K1 (ENSMLUG00000011790) #27	SNAPC5 (ENSMLUG00000011803) #28	ENSMLUG00000011809 #29	ZWILCH (ENSMLUG00000011819) #30	LCTL (ENSMLUG00000011849) #31
Microbat	MODERN SPECIES	1043									ENSMLUG00000008469	TMEM126B (ENSMLUG00000005891)	TMEM126A (ENSMLUG00000005896)	CCDC89 (ENSMLUG00000005906)	ENSMLUG00000005910	CCDC83 (ENSMLUG00000005923)	PICALM (ENSMLUG00000005936)	ENSMLUG00000026711 #22	EED (ENSMLUG00000014688)	HIKESHI (ENSMLUG00000016260)	CCDC81 (ENSMLUG00000001952)	ME3 (ENSMLUG00000001964)	PRSS23 (ENSMLUG00000001979)	FZD4 (ENSMLUG00000009453)	ENSMLUG00000029442	ENSMLUG00000008814	RAB38 (ENSMLUG00000010537)	CTSC (ENSMLUG00000010550)	GRM5 (ENSMLUG00000016200)	ENSMLUG00000024818	TYR (ENSMLUG00000016206)	NOX4 (ENSMLUG00000016907)	ENSMLUG00000025886
Greater horseshoe bat	MODERN SPECIES	24	SLC51B (ENSRFEG00010007859)	RASL12 (ENSRFEG00010007809)	KBTBD13 (ENSRFEG00010007789)	UBAP1L (ENSRFEG00010007722) #7	PDCD7 (ENSRFEG00010007642) #8	CLPX (ENSRFEG00010007597) #9	CILP (ENSRFEG00010007498) #10	PARP16 (ENSRFEG00010007410) #11	IGDCC3 (ENSRFEG00010007254) #12	IGDCC4 (ENSRFEG00010007212) #13	DPP8 (ENSRFEG00010007043) #14	HACD3 (ENSRFEG00010004527) #15	INTS14 (ENSRFEG00010004454) #16	SLC24A1 (ENSRFEG00010004368) #17	DENND4A (ENSRFEG00010004242) #21	ENSRFEG00010004168 #22	MEGF11 (ENSRFEG00010004126) #24	DIS3L (ENSRFEG00010004058) #25	TIPIN (ENSRFEG00010004026) #26	MAP2K1 (ENSRFEG00010004010) #27	SNAPC5 (ENSRFEG00010003999) #28	ENSRFEG00010003980 #29	ZWILCH (ENSRFEG00010003952) #30	LCTL (ENSRFEG00010003917) #31	ENSRFEG00010003900	SMAD6 (ENSRFEG00010003887) #32	SMAD3 (ENSRFEG00010003872) #33	AAGAB (ENSRFEG00010003850) #34	IQCH (ENSRFEG00010003782) #35	MAP2K5 (ENSRFEG00010003624)	SKOR1 (ENSRFEG00010003500)
Megabat	MODERN SPECIES	2040						CLPX (ENSPVAG00000004858) #9	CILP (ENSPVAG00000004867) #10	PARP16 (ENSPVAG00000004875) #11	IGDCC3 (ENSPVAG00000004879) #12	IGDCC4 (ENSPVAG00000004888) #13	DPP8 (ENSPVAG00000004890) #14	HACD3 (ENSPVAG00000004891) #15	INTS14 (ENSPVAG00000004892) #16	SLC24A1 (ENSPVAG00000004893) #17	DENND4A (ENSPVAG00000004894) #21	RAB11A (ENSPVAG00000004909) #22	MEGF11 (ENSPVAG00000004914) #24	DIS3L (ENSPVAG00000004927) #25	TIPIN (ENSPVAG00000004933) #26
Laurasiatheria_c	ANCESTRAL SPECIES																	ENSGT00940000154914.db.b #22
Equus	ANCESTRAL SPECIES																	ENSGT00940000154914.db.b #22
Donkey	MODERN SPECIES	11	SLC51B (ENSEASG00005029917)	RASL12 (ENSEASG00005006494)	KBTBD13 (ENSEASG00005036296)	UBAP1L (ENSEASG00005006489) #7	PDCD7 (ENSEASG00005006486) #8	CLPX (ENSEASG00005006483) #9	CILP (ENSEASG00005006479) #10	PARP16 (ENSEASG00005030198) #11	IGDCC3 (ENSEASG00005006470) #12	IGDCC4 (ENSEASG00005006466) #13	DPP8 (ENSEASG00005006459) #14	HACD3 (ENSEASG00005006456) #15	INTS14 (ENSEASG00005006454) #16	SLC24A1 (ENSEASG00005006448) #17	DENND4A (ENSEASG00005006437) #21	RAB11A (ENSEASG00005006431) #22	MEGF11 (ENSEASG00005006429) #24	DIS3L (ENSEASG00005006407) #25	TIPIN (ENSEASG00005006396) #26	MAP2K1 (ENSEASG00005006387) #27	SNAPC5 (ENSEASG00005006384) #28	RPL4 (ENSEASG00005006373) #29	ZWILCH (ENSEASG00005006339) #30	LCTL (ENSEASG00005006319) #31	ENSEASG00005025450 #32	SMAD3 (ENSEASG00005006315) #33	AAGAB (ENSEASG00005006311) #34	IQCH (ENSEASG00005006301) #35	ENSEASG00005006297	MAP2K5 (ENSEASG00005006290)	SKOR1 (ENSEASG00005006277)
Chiroptera	ANCESTRAL SPECIES																	ENSGT00940000154914.db.b #22
Microchiroptera	ANCESTRAL SPECIES																	ENSGT00940000154914.db.b #22
Greater horseshoe bat	MODERN SPECIES	7	ENSRFEG00010021868	ENSRFEG00010021865	PCDH15 (ENSRFEG00010021032)	ENSRFEG00010020418	ENSRFEG00010020396	MBL2 (ENSRFEG00010020367)	DKK1 (ENSRFEG00010020338)	CSTF2T (ENSRFEG00010020325)	ENSRFEG00010020300	PRKG1 (ENSRFEG00010020166)	A1CF (ENSRFEG00010020111)	ENSRFEG00010019865	SGMS1 (ENSRFEG00010019788)	ENSRFEG00010019748	MINPP1 (ENSRFEG00010019675)	ENSRFEG00010019643 #22	PAPSS2 (ENSRFEG00010019528)	ATAD1 (ENSRFEG00010019472)	PTEN (ENSRFEG00010019405)	RNLS (ENSRFEG00010019358)	LIPK (ENSRFEG00010019342)	LIPM (ENSRFEG00010019214)	ANKRD22 (ENSRFEG00010019181)	ACTA2 (ENSRFEG00010019133)	STAMBPL1 (ENSRFEG00010019067)	ENSRFEG00010019037	LIPA (ENSRFEG00010018997)	IFIT2 (ENSRFEG00010018968)	IFIT3 (ENSRFEG00010018935)	IFIT1 (ENSRFEG00010018894)	IFIT5 (ENSRFEG00010018858)
Laurasiatheria_c	ANCESTRAL SPECIES																	ENSGT00940000154914.eb #22
Chiroptera	ANCESTRAL SPECIES																	ENSGT00940000154914.eb #22
Microchiroptera	ANCESTRAL SPECIES																	ENSGT00940000154914.eb #22
Greater horseshoe bat	MODERN SPECIES	3	ENSRFEG00010015896	FAM120A (ENSRFEG00010015835)	PHF2 (ENSRFEG00010015717)	ENSRFEG00010015683	BARX1 (ENSRFEG00010015567)	PTPDC1 (ENSRFEG00010015242)	ENSRFEG00010015125	ENSRFEG00010014852	ENSRFEG00010014777	ENSRFEG00010014497	ENSRFEG00010014380	ENSRFEG00010014350	ENSRFEG00010014026	SPIN1 (ENSRFEG00010013795)	NXNL2 (ENSRFEG00010013755)	ENSRFEG00010013675 #22	S1PR3 (ENSRFEG00010013643)	ENSRFEG00010013604	SHC3 (ENSRFEG00010013291)	CKS2 (ENSRFEG00010013235)	SECISBP2 (ENSRFEG00010013149)	SEMA4D (ENSRFEG00010012999)	GADD45G (ENSRFEG00010012920)	DIRAS2 (ENSRFEG00010012896)	ENSRFEG00010012850	SYK (ENSRFEG00010012729)	ENSRFEG00010012637	AUH (ENSRFEG00010012532)	NFIL3 (ENSRFEG00010012497)	ENSRFEG00010012451	ROR2 (ENSRFEG00010012333)
Equus	ANCESTRAL SPECIES	4	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914.eb #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Horse	MODERN SPECIES		SLC51B (ENSECAG00000012241)	RASL12 (ENSECAG00000009263)	KBTBD13 (ENSECAG00000003990)	UBAP1L (ENSECAG00000033711) #7	PDCD7 (ENSECAG00000026989) #8	CLPX (ENSECAG00000016127) #9	CILP (ENSECAG00000014515) #10	PARP16 (ENSECAG00000011251) #11	IGDCC3 (ENSECAG00000024763) #12	IGDCC4 (ENSECAG00000024668) #13	DPP8 (ENSECAG00000010846) #14	HACD3 (ENSECAG00000023082) #15	INTS14 (ENSECAG00000018884) #16	SLC24A1 (ENSECAG00000013327) #17	DENND4A (ENSECAG00000024306) #21	RAB11A (ENSECAG00000023865) #22	MEGF11 (ENSECAG00000000706) #24	DIS3L (ENSECAG00000007302) #25	TIPIN (ENSECAG00000004590) #26	MAP2K1 (ENSECAG00000010640) #27	RPL4 (ENSECAG00000023179) #29	ZWILCH (ENSECAG00000018367) #30	LCTL (ENSECAG00000014254) #31	SMAD6 (ENSECAG00000013706) #32	SMAD3 (ENSECAG00000020259) #33	ENSECAG00000047849 #35	AAGAB (ENSECAG00000013142) #34	IQCH (ENSECAG00000007674) #35	ENSECAG00000029823	MAP2K5 (ENSECAG00000022411)	SKOR1 (ENSECAG00000036584)
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Suina	ANCESTRAL SPECIES	12	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Pig	MODERN SPECIES		SLC51B (ENSSSCG00000004923)	RASL12 (ENSSSCG00000038071)	KBTBD13 (ENSSSCG00000035667)	UBAP1L (ENSSSCG00000035506) #7	PDCD7 (ENSSSCG00000004926) #8	CLPX (ENSSSCG00000004927) #9	CILP (ENSSSCG00000004928) #10	PARP16 (ENSSSCG00000004929) #11	IGDCC3 (ENSSSCG00000054127) #12	IGDCC4 (ENSSSCG00000004931) #13	DPP8 (ENSSSCG00000004934) #14	HACD3 (ENSSSCG00000004935) #15	INTS14 (ENSSSCG00000004936) #16	SLC24A1 (ENSSSCG00000004937) #17	DENND4A (ENSSSCG00000004938) #21	RAB11A (ENSSSCG00000032312) #22	MEGF11 (ENSSSCG00000004939) #24	DIS3L (ENSSSCG00000004941) #25	TIPIN (ENSSSCG00000004942) #26	MAP2K1 (ENSSSCG00000004943) #27	SNAPC5 (ENSSSCG00000038941) #28	RPL4 (ENSSSCG00000004945) #29	ZWILCH (ENSSSCG00000004946) #30	ENSSSCG00000051767	LCTL (ENSSSCG00000004947) #31	SMAD6 (ENSSSCG00000004948) #32	SMAD3 (ENSSSCG00000004952) #33	AAGAB (ENSSSCG00000004951) #34	ENSSSCG00000057448 #35	ENSSSCG00000034963 #35	C15orf61 (ENSSSCG00000004954)
Chacoan peccary	MODERN SPECIES	786	SLC51B (ENSCWAG00000019198)	RASL12 (ENSCWAG00000019157)	KBTBD13 (ENSCWAG00000019145)	UBAP1L (ENSCWAG00000019106) #7	PDCD7 (ENSCWAG00000019076) #8	CLPX (ENSCWAG00000019024) #9	CILP (ENSCWAG00000019001) #10	PARP16 (ENSCWAG00000018965) #11	IGDCC3 (ENSCWAG00000018736) #12	IGDCC4 (ENSCWAG00000018683) #13	DPP8 (ENSCWAG00000018161) #14	HACD3 (ENSCWAG00000017975) #15	INTS14 (ENSCWAG00000017595) #16	SLC24A1 (ENSCWAG00000017106) #17	DENND4A (ENSCWAG00000016363) #21	RAB11A (ENSCWAG00000016259) #22	MEGF11 (ENSCWAG00000015726) #24	DIS3L (ENSCWAG00000015597) #25	TIPIN (ENSCWAG00000015560) #26	MAP2K1 (ENSCWAG00000015519) #27	SNAPC5 (ENSCWAG00000015485) #28	RPL4 (ENSCWAG00000015376) #29	ZWILCH (ENSCWAG00000015266) #30	LCTL (ENSCWAG00000015109) #31	SMAD6 (ENSCWAG00000015079) #32	SMAD3 (ENSCWAG00000015026) #33	AAGAB (ENSCWAG00000014993) #34	IQCH (ENSCWAG00000014432) #35	C15orf61 (ENSCWAG00000014382)	MAP2K5 (ENSCWAG00000013886)	SKOR1 (ENSCWAG00000013676)
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Camelidae	ANCESTRAL SPECIES	83	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Alpaca	MODERN SPECIES	2210											DPP8 (ENSVPAG00000004541) #14	HACD3 (ENSVPAG00000004546) #15	INTS14 (ENSVPAG00000004548) #16	ENSVPAG00000004549 #17	DENND4A (ENSVPAG00000004550) #21	RAB11A (ENSVPAG00000004556) #22
Arabian camel	MODERN SPECIES	32	SLC51B (ENSCDRG00005001421)	RASL12 (ENSCDRG00005001442)	ENSCDRG00005001457	ENSCDRG00005001464 #7	PDCD7 (ENSCDRG00005001491) #8	CLPX (ENSCDRG00005001522) #9	CILP (ENSCDRG00005001549) #10	PARP16 (ENSCDRG00005001584) #11	IGDCC3 (ENSCDRG00005001651) #12	IGDCC4 (ENSCDRG00005001726) #13	DPP8 (ENSCDRG00005001839) #14	HACD3 (ENSCDRG00005001929) #15	INTS14 (ENSCDRG00005001994) #16	SLC24A1 (ENSCDRG00005002129) #17	DENND4A (ENSCDRG00005002286) #21	RAB11A (ENSCDRG00005002443) #22	MEGF11 (ENSCDRG00005002479) #24	DIS3L (ENSCDRG00005002526) #25	TIPIN (ENSCDRG00005002562) #26	MAP2K1 (ENSCDRG00005002580) #27	SNAPC5 (ENSCDRG00005002604) #28	ENSCDRG00005002627 #29	ZWILCH (ENSCDRG00005002673) #30	LCTL (ENSCDRG00005002712) #31	ENSCDRG00005002745	ENSCDRG00005002755 #32	SMAD3 (ENSCDRG00005002780) #33	AAGAB (ENSCDRG00005002843) #34	IQCH (ENSCDRG00005002929) #35	C15orf61 (ENSCDRG00005003109)	MAP2K5 (ENSCDRG00005003152)
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.xc #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Cetacea	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.xc.b #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942
Blue whale	MODERN SPECIES	11	MTFMT (ENSBMSG00010005614)	SLC51B (ENSBMSG00010005596)	KBTBD13 (ENSBMSG00010005585)	UBAP1L (ENSBMSG00010005534) #7	PDCD7 (ENSBMSG00010005492) #8	CLPX (ENSBMSG00010005401) #9	CILP (ENSBMSG00010005283) #10	PARP16 (ENSBMSG00010005241) #11	IGDCC3 (ENSBMSG00010005178) #12	IGDCC4 (ENSBMSG00010005162) #13	DPP8 (ENSBMSG00010004802) #14	HACD3 (ENSBMSG00010004707) #15	INTS14 (ENSBMSG00010004651) #16	SLC24A1 (ENSBMSG00010004497) #17	DENND4A (ENSBMSG00010004402) #21	RAB11A (ENSBMSG00010004363) #22	MEGF11 (ENSBMSG00010004218) #24	DIS3L (ENSBMSG00010004171) #25	ENSBMSG00010004151 #26	ENSBMSG00010004137	MAP2K1 (ENSBMSG00010004109) #27	ENSBMSG00010004081 #28	ENSBMSG00010004041 #29	ZWILCH (ENSBMSG00010004025) #30	LCTL (ENSBMSG00010003979) #31	SMAD6 (ENSBMSG00010003960) #32	SMAD3 (ENSBMSG00010003929) #33	AAGAB (ENSBMSG00010003912) #34	IQCH (ENSBMSG00010003720) #35	C15orf61 (ENSBMSG00010003681)	MAP2K5 (ENSBMSG00010003598)
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.xc.b #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392.a #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.xc.b #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35
Dolphin	MODERN SPECIES	2020									IGDCC3 (ENSTTRG00000011813) #12	IGDCC4 (ENSTTRG00000011838) #13	DPP8 (ENSTTRG00000011856) #14	HACD3 (ENSTTRG00000011863) #15	INTS14 (ENSTTRG00000011869) #16	SLC24A1 (ENSTTRG00000011873) #17	DENND4A (ENSTTRG00000011877) #21	RAB11A (ENSTTRG00000011885) #22	MEGF11 (ENSTTRG00000011888) #24
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392.a #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.xc.b #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35
Vaquita	MODERN SPECIES	11	RASL12 (ENSPSNG00000003572)	KBTBD13 (ENSPSNG00000003554)	UBAP1L (ENSPSNG00000003535) #7	PDCD7 (ENSPSNG00000003524) #8	CLPX (ENSPSNG00000003510) #9	CILP (ENSPSNG00000003465) #10	PARP16 (ENSPSNG00000003434) #11	IGDCC3 (ENSPSNG00000003386) #12	IGDCC4 (ENSPSNG00000003316) #13	DPP8 (ENSPSNG00000003202) #14	HACD3 (ENSPSNG00000003119) #15	INTS14 (ENSPSNG00000003047) #16	SLC24A1 (ENSPSNG00000002890) #17	DENND4A (ENSPSNG00000002770) #21	ENSPSNG00000002715	RAB11A (ENSPSNG00000002694) #22	MEGF11 (ENSPSNG00000002539) #24	ENSPSNG00000002464 #25	TIPIN (ENSPSNG00000002436) #26	MAP2K1 (ENSPSNG00000002407) #27	SNAPC5 (ENSPSNG00000002388) #28	ENSPSNG00000002352 #29	ZWILCH (ENSPSNG00000002336) #30	LCTL (ENSPSNG00000002318) #31	ENSPSNG00000002306	SMAD6 (ENSPSNG00000002293) #32	ENSPSNG00000002286	SMAD3 (ENSPSNG00000002263) #33	AAGAB (ENSPSNG00000002239) #34	IQCH (ENSPSNG00000002126) #35	C15orf61 (ENSPSNG00000002043)
Monodontidae	ANCESTRAL SPECIES	27	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392.a #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00390000012563.i.a	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.xc.b #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00390000000134.b.p.b	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35
Beluga whale	MODERN SPECIES	20	SLC51B (ENSDLEG00000008675)	RASL12 (ENSDLEG00000008693)	KBTBD13 (ENSDLEG00000008734)	UBAP1L (ENSDLEG00000008757) #7	PDCD7 (ENSDLEG00000008786) #8	CLPX (ENSDLEG00000008818) #9	CILP (ENSDLEG00000008922) #10	PARP16 (ENSDLEG00000008951) #11	IGDCC3 (ENSDLEG00000009011) #12	IGDCC4 (ENSDLEG00000009168) #13	DPP8 (ENSDLEG00000009245) #14	HACD3 (ENSDLEG00000009324) #15	INTS14 (ENSDLEG00000009368) #16	SLC24A1 (ENSDLEG00000009406) #17	DENND4A (ENSDLEG00000009569) #21	RAB11A (ENSDLEG00000009643) #22	MEGF11 (ENSDLEG00000009720) #24	DIS3L (ENSDLEG00000009982) #25	TIPIN (ENSDLEG00000010313) #26	ENSDLEG00000010343	MAP2K1 (ENSDLEG00000010364) #27	SNAPC5 (ENSDLEG00000010421) #28	RPL4 (ENSDLEG00000010430) #29	ZWILCH (ENSDLEG00000010482) #30	LCTL (ENSDLEG00000010607) #31	ENSDLEG00000010647	ENSDLEG00000010657	SMAD6 (ENSDLEG00000010676) #32	ENSDLEG00000010689	SMAD3 (ENSDLEG00000010707) #33	AAGAB (ENSDLEG00000010803) #34
Narwhal	MODERN SPECIES	308	MTFMT (ENSMMNG00015011203)	SLC51B (ENSMMNG00015011224)	RASL12 (ENSMMNG00015011250)	KBTBD13 (ENSMMNG00015011265)	UBAP1L (ENSMMNG00015011279) #7	PDCD7 (ENSMMNG00015006276) #8	CILP (ENSMMNG00015006369) #10	PARP16 (ENSMMNG00015006524) #11	IGDCC3 (ENSMMNG00015006574) #12	IGDCC4 (ENSMMNG00015006606) #13	DPP8 (ENSMMNG00015006705) #14	HACD3 (ENSMMNG00015006843) #15	INTS14 (ENSMMNG00015006934) #16	SLC24A1 (ENSMMNG00015007028) #17	DENND4A (ENSMMNG00015007114) #21	RAB11A (ENSMMNG00015007170) #22	MEGF11 (ENSMMNG00015007280) #24	DIS3L (ENSMMNG00015007393) #25	TIPIN (ENSMMNG00015007474) #26	ENSMMNG00015007536	MAP2K1 (ENSMMNG00015007579) #27	SNAPC5 (ENSMMNG00015007601) #28	ENSMMNG00015007652 #29	ZWILCH (ENSMMNG00015007746) #30	LCTL (ENSMMNG00015007784) #31	ENSMMNG00015007816	SMAD6 (ENSMMNG00015007869) #32	ENSMMNG00015007889	SMAD3 (ENSMMNG00015007909) #33	AAGAB (ENSMMNG00015007942) #34	IQCH (ENSMMNG00015008052) #35
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	8	PRR19 (ENSPCTG00005006423)	TMEM145 (ENSPCTG00005006442)	ENSPCTG00005006481	ENSPCTG00005006495	LIPE (ENSPCTG00005006526)	ENSPCTG00005006540	ENSPCTG00005006569	ENSPCTG00005006591	BCKDHA (ENSPCTG00005006616)	B3GNT8 (ENSPCTG00005006644)	ENSPCTG00005006654	ENSPCTG00005006668	AXL (ENSPCTG00005006693)	CYP2S1 (ENSPCTG00005006912)	ENSPCTG00005006942	ENSPCTG00005006970 #22	ENSPCTG00005006988	LTBP4 (ENSPCTG00005007058)	SHKBP1 (ENSPCTG00005007527)	SPTBN4 (ENSPCTG00005007644)	AKT2 (ENSPCTG00005007740)	ENSPCTG00005007911	ENSPCTG00005007924	ZNF546 (ENSPCTG00005007934)	LEUTX (ENSPCTG00005007958)	ENSPCTG00005007966	MED29 (ENSPCTG00005008008)	PAF1 (ENSPCTG00005008093)	SAMD4B (ENSPCTG00005008151)	GMFG (ENSPCTG00005008254)	LRFN1 (ENSPCTG00005008674)
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	2	SLC51B (ENSPCTG00005013568)	RASL12 (ENSPCTG00005013690)	KBTBD13 (ENSPCTG00005013835)	UBAP1L (ENSPCTG00005013861) #7	PDCD7 (ENSPCTG00005013950) #8	CLPX (ENSPCTG00005014028) #9	CILP (ENSPCTG00005014102) #10	PARP16 (ENSPCTG00005014147) #11	IGDCC3 (ENSPCTG00005014269) #12	IGDCC4 (ENSPCTG00005014441) #13	DPP8 (ENSPCTG00005014761) #14	HACD3 (ENSPCTG00005015026) #15	INTS14 (ENSPCTG00005015317) #16	SLC24A1 (ENSPCTG00005015689) #17	DENND4A (ENSPCTG00005016168) #21	RAB11A (ENSPCTG00005016434) #22	MEGF11 (ENSPCTG00005016590) #24	DIS3L (ENSPCTG00005017408) #25	TIPIN (ENSPCTG00005017493) #26	MAP2K1 (ENSPCTG00005017538) #27	SNAPC5 (ENSPCTG00005017569) #28	ENSPCTG00005017611 #29	ZWILCH (ENSPCTG00005017727) #30	LCTL (ENSPCTG00005017782) #31	ENSPCTG00005018004	SMAD6 (ENSPCTG00005018032) #32	ENSPCTG00005018068	SMAD3 (ENSPCTG00005018084) #33	AAGAB (ENSPCTG00005018169) #34	IQCH (ENSPCTG00005018285) #35	C11H15orf61 (ENSPCTG00005018901)
Sperm whale	MODERN SPECIES	10	P2RX4 (ENSPCTG00005020835)	CAMKK2 (ENSPCTG00005020886)	ANAPC5 (ENSPCTG00005021002)	RNF34 (ENSPCTG00005021118)	ENSPCTG00005021159	ENSPCTG00005021177	TMEM120B (ENSPCTG00005021189)	ENSPCTG00005009069	ENSPCTG00005009145	LRRC43 (ENSPCTG00005009311)	B3GNT4 (ENSPCTG00005009517)	DIABLO (ENSPCTG00005009539)	ENSPCTG00005009664	VPS33A (ENSPCTG00005009687)	CLIP1 (ENSPCTG00005009772)	ENSPCTG00005010009 #22	ZCCHC8 (ENSPCTG00005010035)	RSRC2 (ENSPCTG00005010085)	KNTC1 (ENSPCTG00005010211)	ENSPCTG00005011280	HCAR1 (ENSPCTG00005011288)	DENR (ENSPCTG00005011303)	CCDC62 (ENSPCTG00005011429)	HIP1R (ENSPCTG00005011607)	VPS37B (ENSPCTG00005011671)	ENSPCTG00005011703	C19H12orf65 (ENSPCTG00005011741)	CDK2AP1 (ENSPCTG00005011777)	SBNO1 (ENSPCTG00005011851)	KMT5A (ENSPCTG00005012443)	RILPL2 (ENSPCTG00005012549)
Pecora	ANCESTRAL SPECIES	6	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.xc #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Percora_a	ANCESTRAL SPECIES	8	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.xc #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Bovidae	ANCESTRAL SPECIES	7	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.xc #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES	32	ENSGT00940000155485.a.b.e	ENSGT00940000155485.a.b.f	ENSGT00390000015719.d	ENSGT00390000011425.B	ENSGT01000000214434.B.b.e.a.i.b	ENSGT00940000159499	ENSGT00940000154342.C	ENSGT00940000164247.f	ENSGT00940000154883.h	ENSGT00940000164247.e	ENSGT00530000063484.b.b	ENSGT00950000183442	ENSGT00940000162825.p.a	ENSGT00940000162825.p.b	ENSGT00940000159699	ENSGT00940000154914.hb #22	ENSGT00940000163254	ENSGT00940000165165	ENSGT00940000162492.x	ENSGT00950000182841.b.a.a.a.d.b.a.a.b	ENSGT00940000158538	ENSGT00940000163515	ENSGT00950000182841.b.a.a.a.d.b.a.b	ENSGT00530000063186.a	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009.i	ENSGT00940000162492.w	ENSGT00940000158618	ENSGT00940000160302	ENSGT00940000159616
American bison	MODERN SPECIES	2090																ENSBBBG00000022716 #22
Bos	ANCESTRAL SPECIES	32	ENSGT00940000155485.a.b.f	ENSGT00390000015719.d	ENSGT00390000011425.B	ENSGT01000000214434.B.b.e.a.i.b	ENSGT00940000159499	ENSGT00940000154342.C	ENSGT00940000164247.f.b	ENSGT00940000154883.h.i	ENSGT00940000164247.f.a	ENSGT00950000182841.b.a.a.a.d.b.b	ENSGT00530000063484.b.b	ENSGT00950000183442	ENSGT00940000162825.p.a	ENSGT00940000162825.p.b	ENSGT00940000159699	ENSGT00940000154914.hb #22	ENSGT00940000163254	ENSGT00940000165165	ENSGT00940000162492.x	ENSGT00950000182841.b.a.a.a.d.b.a.a.b	ENSGT00940000158538	ENSGT00940000163515	ENSGT00950000182841.b.a.a.a.d.b.a.b	ENSGT00530000063186.a	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009.i	ENSGT00940000162492.w	ENSGT00940000158618	ENSGT00940000160302	ENSGT00940000159616
Bos_b	ANCESTRAL SPECIES	142																ENSGT00940000154914.hb #22	ENSGT00940000163254
Hybrid Bos Indicus	MODERN SPECIES	1	SLC51B (ENSBIXG00005008262)	RASL12 (ENSBIXG00005008245)	KBTBD13 (ENSBIXG00005008220)	UBAP1L (ENSBIXG00005008208) #7	PDCD7 (ENSBIXG00005008169) #8	CILP (ENSBIXG00005008107) #10	PARP16 (ENSBIXG00005008021) #11	IGDCC3 (ENSBIXG00005007974) #12	IGDCC4 (ENSBIXG00005007962) #13	DPP8 (ENSBIXG00005007925) #14	DENND4A (ENSBIXG00005007862) #21	HACD3 (ENSBIXG00005029324) #15	INTS14 (ENSBIXG00005029402) #16	SLC24A1 (ENSBIXG00005029443) #17	ENSBIXG00005029457	RAB11A (ENSBIXG00005029469) #22	MEGF11 (ENSBIXG00005029582) #24	DIS3L (ENSBIXG00005029839) #25	TIPIN (ENSBIXG00005029852) #26	ENSBIXG00005029869 #27	SNAPC5 (ENSBIXG00005029881) #28	ENSBIXG00005029889 #29	ZWILCH (ENSBIXG00005029921) #30	LCTL (ENSBIXG00005029961) #31	SMAD6 (ENSBIXG00005030012) #32	SMAD3 (ENSBIXG00005030065) #33	AAGAB (ENSBIXG00005030085) #34	IQCH (ENSBIXG00005030120) #35	C15orf61 (ENSBIXG00005030179)	MAP2K5 (ENSBIXG00005030309)	SKOR1 (ENSBIXG00005030471)
Cow	MODERN SPECIES	177	ENSBTAG00000048795	TAB3 (ENSBTAG00000048159)	ENSBTAG00000008248	ENSBTAG00000053663	ENSBTAG00000050905	ENSBTAG00000054277	ENSBTAG00000046838	ENSBTAG00000052471	ENSBTAG00000054004	ENSBTAG00000049636	ENSBTAG00000040357	ENSBTAG00000012533	TMEM47 (ENSBTAG00000014304)	ENSBTAG00000040406	MAGEB16 (ENSBTAG00000038595)	ENSBTAG00000048711 #22	ENSBTAG00000047410	ENSBTAG00000005749	H2AL1Q (ENSBTAG00000049451)	ENSBTAG00000048419	ENSBTAG00000050369	PRRG1 (ENSBTAG00000050233)	ENSBTAG00000046589	ENSBTAG00000055305	LANCL3 (ENSBTAG00000003088)	ENSBTAG00000052354	CYBB (ENSBTAG00000019953)	DYNLT3 (ENSBTAG00000038156)	H2AL3 (ENSBTAG00000052113)	SYTL5 (ENSBTAG00000004955)	ENSBTAG00000055069
Bos_a	ANCESTRAL SPECIES	26	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914.ib #22	ENSGT00940000154914.hb #22	ENSGT00940000165165	ENSGT00940000162492.x	ENSGT00950000182841.b.a.a.a.d.b.a.a.a.b	ENSGT00940000158538	ENSGT00940000163515	ENSGT00950000182841.b.a.a.a.d.b.a.b	ENSGT00530000063186.a	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009.i	ENSGT00940000162492.w	ENSGT00940000158618	ENSGT00940000159616	ENSGT00510000047417.j	ENSGT00940000153096.b.c.a.a.b
Wild yak	MODERN SPECIES	1147	MTFMT (ENSBMUG00000004677)	SLC51B (ENSBMUG00000004707)	RASL12 (ENSBMUG00000004727)	ENSBMUG00000004737	ENSBMUG00000004770	ENSBMUG00000004785 #8	CILP (ENSBMUG00000004840) #10	PARP16 (ENSBMUG00000004892) #11	IGDCC3 (ENSBMUG00000004930) #12	IGDCC4 (ENSBMUG00000004971) #13	DPP8 (ENSBMUG00000005098) #14	HACD3 (ENSBMUG00000005161) #15	INTS14 (ENSBMUG00000005195) #16	SLC24A1 (ENSBMUG00000005281) #17	DENND4A (ENSBMUG00000005355) #21	RAB11A (ENSBMUG00000005380) #22	MEGF11 (ENSBMUG00000005468) #24
Domestic yak	MODERN SPECIES	69	ENSBGRG00000008820	ENSBGRG00000008800	ENSBGRG00000008651	ENSBGRG00000008617	ENSBGRG00000008605	ENSBGRG00000008590	ENSBGRG00000008563	ENSBGRG00000008513	ENSBGRG00000008441	ENSBGRG00000008430	TMEM47 (ENSBGRG00000008401)	ENSBGRG00000008355	ENSBGRG00000008290	ENSBGRG00000008253	ENSBGRG00000008170	ENSBGRG00000008137 #22	ENSBGRG00000008090	ENSBGRG00000008058	ENSBGRG00000008034	PRRG1 (ENSBGRG00000007941)	ENSBGRG00000007894	ENSBGRG00000007860	LANCL3 (ENSBGRG00000007763)	CYBB (ENSBGRG00000007179)	ENSBGRG00000007080	ENSBGRG00000007060	ENSBGRG00000022166	SYTL5 (ENSBGRG00000021997)	ENSBGRG00000021428	OTC (ENSBGRG00000021238)	ENSBGRG00000021188
Bovinae	ANCESTRAL SPECIES	33	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914.ib #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.xc #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Bos	ANCESTRAL SPECIES	31	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914.ib #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.xc.e.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Bos_b	ANCESTRAL SPECIES	28	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914.ib #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.xc.e.a #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00910000147890	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Cow	MODERN SPECIES	1	MTFMT (ENSBTAG00000021630)	SLC51B (ENSBTAG00000003737)	RASL12 (ENSBTAG00000000062)	KBTBD13 (ENSBTAG00000017471)	UBAP1L (ENSBTAG00000051351) #7	PDCD7 (ENSBTAG00000039658) #8	CLPX (ENSBTAG00000008386) #9	PARP16 (ENSBTAG00000012352) #11	IGDCC3 (ENSBTAG00000008828) #12	IGDCC4 (ENSBTAG00000006440) #13	DPP8 (ENSBTAG00000014807) #14	HACD3 (ENSBTAG00000015155) #15	INTS14 (ENSBTAG00000015158) #16	SLC24A1 (ENSBTAG00000025826) #17	DENND4A (ENSBTAG00000017095) #21	RAB11A (ENSBTAG00000018959) #22	MEGF11 (ENSBTAG00000034140) #24	DIS3L (ENSBTAG00000000371) #25	TIPIN (ENSBTAG00000000372) #26	MAP2K1 (ENSBTAG00000033983) #27	SNAPC5 (ENSBTAG00000005210) #28	RPL4 (ENSBTAG00000005211) #29	ZWILCH (ENSBTAG00000005213) #30	LCTL (ENSBTAG00000005214) #31	ENSBTAG00000050356	SMAD6 (ENSBTAG00000000625) #32	SMAD3 (ENSBTAG00000012599) #33	AAGAB (ENSBTAG00000040368) #34	IQCH (ENSBTAG00000013638) #35	C10H15orf61 (ENSBTAG00000045628)	MAP2K5 (ENSBTAG00000000218)
Bos_a	ANCESTRAL SPECIES	26	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914.ib #22	ENSGT00940000154914.hb #22	ENSGT00940000165165	ENSGT00940000162492.x	ENSGT00950000182841.b.a.a.a.d.b.a.a.a.b	ENSGT00940000158538	ENSGT00940000163515	ENSGT00950000182841.b.a.a.a.d.b.a.b	ENSGT00530000063186.a	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009.i	ENSGT00940000162492.w	ENSGT00940000158618	ENSGT00940000159616	ENSGT00510000047417.j
Domestic yak	MODERN SPECIES	2	KBTBD13 (ENSBGRG00000003675)	ENSBGRG00000003640	UBAP1L (ENSBGRG00000003616) #7	PDCD7 (ENSBGRG00000025646) #8	CLPX (ENSBGRG00000025615) #9	CILP (ENSBGRG00000025584) #10	PARP16 (ENSBGRG00000025545) #11	IGDCC3 (ENSBGRG00000025511) #12	IGDCC4 (ENSBGRG00000025454) #13	DPP8 (ENSBGRG00000025360) #14	HACD3 (ENSBGRG00000025307) #15	INTS14 (ENSBGRG00000025180) #16	SLC24A1 (ENSBGRG00000025095) #17	ENSBGRG00000025078	DENND4A (ENSBGRG00000024953) #21	ENSBGRG00000024884 #22	MEGF11 (ENSBGRG00000024819) #24	DIS3L (ENSBGRG00000024760) #25	TIPIN (ENSBGRG00000024730) #26	MAP2K1 (ENSBGRG00000024678) #27	SNAPC5 (ENSBGRG00000024649) #28	ENSBGRG00000024489 #29	ZWILCH (ENSBGRG00000024356) #30	LCTL (ENSBGRG00000024229) #31	SMAD6 (ENSBGRG00000024050) #32	SMAD3 (ENSBGRG00000023965) #33	AAGAB (ENSBGRG00000023783) #34	IQCH (ENSBGRG00000023490) #35	ENSBGRG00000023451	ENSBGRG00000023428	MAP2K5 (ENSBGRG00000023013)
American bison	MODERN SPECIES	2972	MTFMT (ENSBBBG00000025276)	SLC51B (ENSBBBG00000025287)	RASL12 (ENSBBBG00000007855)	ENSBBBG00000006712	PDCD7 (ENSBBBG00000007861) #8	CLPX (ENSBBBG00000025450) #9	CILP (ENSBBBG00000025485) #10	PARP16 (ENSBBBG00000009370) #11	IGDCC3 (ENSBBBG00000001479) #12	IGDCC4 (ENSBBBG00000009376) #13	DPP8 (ENSBBBG00000001480) #14	HACD3 (ENSBBBG00000009384) #15	INTS14 (ENSBBBG00000001482) #16	SLC24A1 (ENSBBBG00000009385) #17	DENND4A (ENSBBBG00000009388) #21	ENSBBBG00000001484 #22	MEGF11 (ENSBBBG00000009393) #24	DIS3L (ENSBBBG00000001485) #25	ENSBBBG00000009401	MAP2K1 (ENSBBBG00000009402) #27	SNAPC5 (ENSBBBG00000009405) #28	RPL4 (ENSBBBG00000009410) #29	ZWILCH (ENSBBBG00000007486) #30	LCTL (ENSBBBG00000009415) #31	SMAD6 (ENSBBBG00000001493) #32	SMAD3 (ENSBBBG00000009419) #33	AAGAB (ENSBBBG00000009422) #34	IQCH (ENSBBBG00000009426) #35	C15orf61 (ENSBBBG00000009428)	MAP2K5 (ENSBBBG00000009430)	PIAS1 (ENSBBBG00000009435)
Caprinae	ANCESTRAL SPECIES	30	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.o #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145.xc #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	1	ENSOARG00020009052	ENSOARG00020006241	ENSOARG00020004163	ENSOARG00020004016	SOX21 (ENSOARG00020004000)	GPR180 (ENSOARG00020003965)	TGDS (ENSOARG00020003861)	DCT (ENSOARG00020003829)	GPC6 (ENSOARG00020003765)	GPC5 (ENSOARG00020003688)	ENSOARG00020003564	SLITRK5 (ENSOARG00020003517)	ENSOARG00020003440	ENSOARG00020003428	ENSOARG00020003415	ENSOARG00020003396 #22	ENSOARG00020003363	ENSOARG00020003340	SLITRK6 (ENSOARG00020003278)	ENSOARG00020003266	ENSOARG00020003191	ENSOARG00020003130	SLITRK1 (ENSOARG00020003079)	SPRY2 (ENSOARG00020018823)	NDFIP2 (ENSOARG00020018757)	RBM26 (ENSOARG00020016077)	OBI1 (ENSOARG00020015941)	POU4F1 (ENSOARG00020015922)	EDNRB (ENSOARG00020015802)	SLAIN1 (ENSOARG00020015048)	SCEL (ENSOARG00020013398)
Rambouillet Sheep	MODERN SPECIES	23	RASL12 (ENSOARG00020005185)	KBTBD13 (ENSOARG00020005214)	UBAP1L (ENSOARG00020005231) #7	PDCD7 (ENSOARG00020005266) #8	ENSOARG00020005294	CLPX (ENSOARG00020005303) #9	CILP (ENSOARG00020005386) #10	PARP16 (ENSOARG00020005448) #11	IGDCC3 (ENSOARG00020005562) #12	IGDCC4 (ENSOARG00020005613) #13	DPP8 (ENSOARG00020005690) #14	HACD3 (ENSOARG00020005830) #15	INTS14 (ENSOARG00020006021) #16	SLC24A1 (ENSOARG00020006188) #17	DENND4A (ENSOARG00020006221) #21	ENSOARG00020006812 #22	MEGF11 (ENSOARG00020006928) #24	DIS3L (ENSOARG00020007756) #25	TIPIN (ENSOARG00020007825) #26	MAP2K1 (ENSOARG00020007890) #27	SNAPC5 (ENSOARG00020007973) #28	RPL4 (ENSOARG00020008040) #29	ZWILCH (ENSOARG00020008203) #30	LCTL (ENSOARG00020008384) #31	SMAD6 (ENSOARG00020008552) #32	SMAD3 (ENSOARG00020008589) #33	ENSOARG00020008703 #34	IQCH (ENSOARG00020008820) #35	C15orf61 (ENSOARG00020009584)	MAP2K5 (ENSOARG00020009665)	SKOR1 (ENSOARG00020010969)
Goat	DUPLICATION
Goat	MODERN SPECIES	29	CYBB (ENSCHIG00000012563)	ENSCHIG00000006980	DYNLT3 (ENSCHIG00000006920)	SYTL5 (ENSCHIG00000012520)	ENSCHIG00000019872	ENSCHIG00000018467	ENSCHIG00000013190	ENSCHIG00000018590	OTC (ENSCHIG00000007645)	ENSCHIG00000005388	ENSCHIG00000024768	ENSCHIG00000014221	ENSCHIG00000021648	ENSCHIG00000003744	ENSCHIG00000021141	ENSCHIG00000013602 #22	ENSCHIG00000009753	PRRG1 (ENSCHIG00000020544)	ENSCHIG00000014357	ENSCHIG00000025556	ENSCHIG00000013904	TMEM47 (ENSCHIG00000023518)	ENSCHIG00000024770	ENSCHIG00000015615	ENSCHIG00000024249	ENSCHIG00000015130	ENSCHIG00000007883	TAB3 (ENSCHIG00000002896)	ENSCHIG00000020917	TASL (ENSCHIG00000019394)	IL1RAPL1 (ENSCHIG00000014833)
Goat	MODERN SPECIES	1	RASL12 (ENSCHIG00000011540)	KBTBD13 (ENSCHIG00000006594)	UBAP1L (ENSCHIG00000019099) #7	PDCD7 (ENSCHIG00000014756) #8	CLPX (ENSCHIG00000023656) #9	CILP (ENSCHIG00000012679) #10	PARP16 (ENSCHIG00000011861) #11	IGDCC3 (ENSCHIG00000013215) #12	IGDCC4 (ENSCHIG00000021302) #13	DPP8 (ENSCHIG00000013527) #14	HACD3 (ENSCHIG00000020855) #15	INTS14 (ENSCHIG00000012971) #16	SLC24A1 (ENSCHIG00000023644) #17	ENSCHIG00000015128	DENND4A (ENSCHIG00000024015) #21	ENSCHIG00000012183 #22	ENSCHIG00000006809	MEGF11 (ENSCHIG00000023140) #24	DIS3L (ENSCHIG00000009744) #25	ENSCHIG00000000481 #26	MAP2K1 (ENSCHIG00000021340) #27	SNAPC5 (ENSCHIG00000011315) #28	RPL4 (ENSCHIG00000012421) #29	ZWILCH (ENSCHIG00000015830) #30	LCTL (ENSCHIG00000017181) #31	SMAD6 (ENSCHIG00000012651) #32	SMAD3 (ENSCHIG00000013774) #33	ENSCHIG00000015028 #34	IQCH (ENSCHIG00000009034) #35	C15orf61 (ENSCHIG00000026630)	MAP2K5 (ENSCHIG00000022039)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	76								ENSMMSG00000014267	ENSMMSG00000014252	ENSMMSG00000014230	ENSMMSG00000014212	ENSMMSG00000014198	TMEM47 (ENSMMSG00000012828)	ENSMMSG00000012803	ENSMMSG00000012777	ENSMMSG00000012763 #22	CFAP47 (ENSMMSG00000012416)	ENSMMSG00000012332	ENSMMSG00000012308
Siberian musk deer	MODERN SPECIES	70	KBTBD13 (ENSMMSG00000019390)	UBAP1L (ENSMMSG00000019405) #7	PDCD7 (ENSMMSG00000019450) #8	CLPX (ENSMMSG00000019476) #9	CILP (ENSMMSG00000019540) #10	PARP16 (ENSMMSG00000019586) #11	IGDCC3 (ENSMMSG00000000099) #12	IGDCC4 (ENSMMSG00000000147) #13	DPP8 (ENSMMSG00000000258) #14	ENSMMSG00000000445	HACD3 (ENSMMSG00000000485) #15	INTS14 (ENSMMSG00000000581) #16	SLC24A1 (ENSMMSG00000000735) #17	ENSMMSG00000000783	DENND4A (ENSMMSG00000000845) #21	ENSMMSG00000000971 #22	MEGF11 (ENSMMSG00000001023) #24	DIS3L (ENSMMSG00000001148) #25	TIPIN (ENSMMSG00000001178) #26	MAP2K1 (ENSMMSG00000001210) #27	SNAPC5 (ENSMMSG00000001249) #28	ENSMMSG00000001277 #29	ZWILCH (ENSMMSG00000001358) #30	LCTL (ENSMMSG00000001442) #31	SMAD6 (ENSMMSG00000001473) #32	SMAD3 (ENSMMSG00000001493) #33	AAGAB (ENSMMSG00000001517) #34	IQCH (ENSMMSG00000001575) #35	C15orf61 (ENSMMSG00000001796)	MAP2K5 (ENSMMSG00000001850)	SKOR1 (ENSMMSG00000002112)
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000017854	ENSCHYG00000017837	NR0B1 (ENSCHYG00000017774)	TASL (ENSCHYG00000017678)	ENSCHYG00000017279	TAB3 (ENSCHYG00000017183)	ENSCHYG00000017141	DMD (ENSCHYG00000025075)	ENSCHYG00000024891	ENSCHYG00000024884	ENSCHYG00000024874	ENSCHYG00000024865	ENSCHYG00000024844	ENSCHYG00000024831	ENSCHYG00000024803	ENSCHYG00000024784 #22	ENSCHYG00000024760	ENSCHYG00000024561	ENSCHYG00000024537	ENSCHYG00000024517	ENSCHYG00000024508	ENSCHYG00000024484	PRRG1 (ENSCHYG00000024453)	ENSCHYG00000024437	ENSCHYG00000024427	LANCL3 (ENSCHYG00000024391)	CYBB (ENSCHYG00000024252)	DYNLT3 (ENSCHYG00000024212)	ENSCHYG00000024198	SYTL5 (ENSCHYG00000024135)	ENSCHYG00000023658
Yarkand deer	MODERN SPECIES	3	RASL12 (ENSCHYG00000006929)	KBTBD13 (ENSCHYG00000006975)	UBAP1L (ENSCHYG00000007000) #7	PDCD7 (ENSCHYG00000007035) #8	CLPX (ENSCHYG00000007103) #9	CILP (ENSCHYG00000007285) #10	ENSCHYG00000007376 #11	IGDCC3 (ENSCHYG00000007443) #12	IGDCC4 (ENSCHYG00000007622) #13	DPP8 (ENSCHYG00000007762) #14	HACD3 (ENSCHYG00000008236) #15	INTS14 (ENSCHYG00000008447) #16	SLC24A1 (ENSCHYG00000008613) #17	DENND4A (ENSCHYG00000008838) #21	ENSCHYG00000009117	ENSCHYG00000009145 #22	MEGF11 (ENSCHYG00000009296) #24	DIS3L (ENSCHYG00000010099) #25	TIPIN (ENSCHYG00000010297) #26	MAP2K1 (ENSCHYG00000010364) #27	ENSCHYG00000010432	SNAPC5 (ENSCHYG00000010450) #28	ENSCHYG00000010506 #29	ZWILCH (ENSCHYG00000010774) #30	LCTL (ENSCHYG00000011283) #31	ENSCHYG00000011323	SMAD6 (ENSCHYG00000011380) #32	SMAD3 (ENSCHYG00000011473) #33	AAGAB (ENSCHYG00000011610) #34	IQCH (ENSCHYG00000011825) #35	C15orf61 (ENSCHYG00000012160)
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Xenarthra	ANCESTRAL SPECIES	230										ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32
Sloth	MODERN SPECIES	558																ENSCHOG00000000669 #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	984										IGDCC4 (ENSDNOG00000015741) #13	DPP8 (ENSDNOG00000001444) #14	HACD3 (ENSDNOG00000001687) #15	INTS14 (ENSDNOG00000001690) #16	SLC24A1 (ENSDNOG00000000816) #17	DENND4A (ENSDNOG00000019872) #21	ENSDNOG00000038479 #22	MEGF11 (ENSDNOG00000016951) #24	DIS3L (ENSDNOG00000016967) #25	TIPIN (ENSDNOG00000003177) #26	MAP2K1 (ENSDNOG00000016563) #27	ENSDNOG00000006689 #28	ENSDNOG00000006693 #29	ZWILCH (ENSDNOG00000006711) #30	LCTL (ENSDNOG00000006740) #31	SMAD6 (ENSDNOG00000008227) #32
Armadillo	MODERN SPECIES	628														TRPA1 (ENSDNOG00000005728)	MSC (ENSDNOG00000019019)	ENSDNOG00000046234 #22	EYA1 (ENSDNOG00000010896)	ENSDNOG00000045912	XKR9 (ENSDNOG00000018807)	ENSDNOG00000045238	ENSDNOG00000049653	TRAM1 (ENSDNOG00000009296)	NCOA2 (ENSDNOG00000014500)	SLCO5A1 (ENSDNOG00000037230)	SULF1 (ENSDNOG00000004499)	C8orf34 (ENSDNOG00000019309)	PREX2 (ENSDNOG00000017027)
Afrotheria	ANCESTRAL SPECIES	58	ENSGT00390000017828	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Tenrec	MODERN SPECIES	8084																RAB11A (ENSETEG00000004920) #22	ENSETEG00000004923 #24	ENSETEG00000004930
Afrotheria_a	ANCESTRAL SPECIES	56	ENSGT00390000017828	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Elephant	MODERN SPECIES	466	SPG21 (ENSLAFG00000002639)	MTFMT (ENSLAFG00000006985)	SLC51B (ENSLAFG00000030011)	RASL12 (ENSLAFG00000006982)	KBTBD13 (ENSLAFG00000031048)	PDCD7 (ENSLAFG00000004977) #8	CLPX (ENSLAFG00000004978) #9	CILP (ENSLAFG00000005873) #10	PARP16 (ENSLAFG00000014938) #11	IGDCC3 (ENSLAFG00000000244) #12	IGDCC4 (ENSLAFG00000022955) #13	DPP8 (ENSLAFG00000013000) #14	HACD3 (ENSLAFG00000010226) #15	INTS14 (ENSLAFG00000010235) #16	DENND4A (ENSLAFG00000010247) #21	RAB11A (ENSLAFG00000011418) #22	MEGF11 (ENSLAFG00000011424) #24	DIS3L (ENSLAFG00000006866) #25	TIPIN (ENSLAFG00000026016) #26	MAP2K1 (ENSLAFG00000006487) #27	SNAPC5 (ENSLAFG00000006491) #28	RPL4 (ENSLAFG00000006494) #29	LCTL (ENSLAFG00000012306) #31	SMAD6 (ENSLAFG00000013285) #32	SMAD3 (ENSLAFG00000021903) #33	AAGAB (ENSLAFG00000022590) #34	IQCH (ENSLAFG00000011381) #35	C15orf61 (ENSLAFG00000000737)	MAP2K5 (ENSLAFG00000001427)	SKOR1 (ENSLAFG00000018189)	ENSLAFG00000029244
Hyrax	MODERN SPECIES	506																RAB11A (ENSPCAG00000002640) #22	MEGF11 (ENSPCAG00000002677) #24
Marsupialia	ANCESTRAL SPECIES		ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Opossum	MODERN SPECIES		ENSMODG00000048415	RASL12 (ENSMODG00000038689)	UBAP1L (ENSMODG00000029751) #7	PDCD7 (ENSMODG00000010358) #8	CLPX (ENSMODG00000010348) #9	ENSMODG00000029783	CILP (ENSMODG00000010296) #10	PARP16 (ENSMODG00000041084) #11	IGDCC3 (ENSMODG00000010271) #12	IGDCC4 (ENSMODG00000010244) #13	DPP8 (ENSMODG00000010208) #14	HACD3 (ENSMODG00000009893) #15	INTS14 (ENSMODG00000009876) #16	SLC24A1 (ENSMODG00000009861) #17	DENND4A (ENSMODG00000009838) #21	RAB11A (ENSMODG00000009810) #22	MEGF11 (ENSMODG00000009795) #24	DIS3L (ENSMODG00000009760) #25	TIPIN (ENSMODG00000009724) #26	ENSMODG00000039883	MAP2K1 (ENSMODG00000009715) #27	ENSMODG00000025470 #28	RPL4 (ENSMODG00000009657) #29	ZWILCH (ENSMODG00000009648) #30	LCTL (ENSMODG00000009632) #31	SMAD6 (ENSMODG00000009620) #32	SMAD3 (ENSMODG00000038564) #33	ENSMODG00000009585 #34	ENSMODG00000009566 #35	C15orf61 (ENSMODG00000036723)	MAP2K5 (ENSMODG00000009527)
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000010231	RASL12 (ENSSHAG00000010405)	KBTBD13 (ENSSHAG00000031944)	UBAP1L (ENSSHAG00000024296) #7	PDCD7 (ENSSHAG00000021601) #8	CLPX (ENSSHAG00000021063) #9	CILP (ENSSHAG00000011619) #10	PARP16 (ENSSHAG00000028933) #11	IGDCC3 (ENSSHAG00000012266) #12	IGDCC4 (ENSSHAG00000012686) #13	DPP8 (ENSSHAG00000012989) #14	HACD3 (ENSSHAG00000013349) #15	INTS14 (ENSSHAG00000013462) #16	SLC24A1 (ENSSHAG00000013623) #17	DENND4A (ENSSHAG00000002367) #21	RAB11A (ENSSHAG00000006622) #22	MEGF11 (ENSSHAG00000006869) #24	DIS3L (ENSSHAG00000010970) #25	TIPIN (ENSSHAG00000011237) #26	MAP2K1 (ENSSHAG00000029460) #27	SNAPC5 (ENSSHAG00000025154) #28	RPL4 (ENSSHAG00000002421) #29	ZWILCH (ENSSHAG00000002622) #30	LCTL (ENSSHAG00000003461) #31	SMAD6 (ENSSHAG00000007962) #32	SMAD3 (ENSSHAG00000023904) #33	AAGAB (ENSSHAG00000012729) #34	IQCH (ENSSHAG00000012985) #35	C15orf61 (ENSSHAG00000031222)	MAP2K5 (ENSSHAG00000014400)	SKOR1 (ENSSHAG00000027578)
Diprotodontia	ANCESTRAL SPECIES		ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Wallaby	MODERN SPECIES	1311																RAB11A (ENSMEUG00000005937) #22
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00390000010409	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b #7	ENSGT00390000017392 #8	ENSGT00390000017625 #9	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Common wonbat	MODERN SPECIES	581	MTFMT (ENSVURG00010016671)	RASL12 (ENSVURG00010016692)	KBTBD13 (ENSVURG00010016711)	UBAP1L (ENSVURG00010016718) #7	PDCD7 (ENSVURG00010016727) #8	CLPX (ENSVURG00010016746) #9	CILP (ENSVURG00010016754) #10	PARP16 (ENSVURG00010016773) #11	IGDCC3 (ENSVURG00010016786) #12	IGDCC4 (ENSVURG00010016817) #13	DPP8 (ENSVURG00010016847) #14	HACD3 (ENSVURG00010016877) #15	INTS14 (ENSVURG00010016912) #16	ENSVURG00010017031 #17	DENND4A (ENSVURG00010017069) #21	RAB11A (ENSVURG00010017156) #22	MEGF11 (ENSVURG00010017205) #24	DIS3L (ENSVURG00010017304) #25	TIPIN (ENSVURG00010017324) #26	MAP2K1 (ENSVURG00010017352) #27	SNAPC5 (ENSVURG00010017361) #28	RPL4 (ENSVURG00010017371) #29	ZWILCH (ENSVURG00010017403) #30	LCTL (ENSVURG00010017479) #31	SMAD6 (ENSVURG00010017499) #32	SMAD3 (ENSVURG00010017513) #33	AAGAB (ENSVURG00010017532) #34	IQCH (ENSVURG00010017554) #35	ENSVURG00010017577	C15orf61 (ENSVURG00010017585)	MAP2K5 (ENSVURG00010017619)
koala	MODERN SPECIES		SPG21 (ENSPCIG00000024124)	MTFMT (ENSPCIG00000024121)	ENSPCIG00000024118	RASL12 (ENSPCIG00000035910)	UBAP1L (ENSPCIG00000024116) #7	PDCD7 (ENSPCIG00000024115) #8	CLPX (ENSPCIG00000024113) #9	CILP (ENSPCIG00000024111) #10	PARP16 (ENSPCIG00000024110) #11	IGDCC4 (ENSPCIG00000024106) #13	DPP8 (ENSPCIG00000024105) #14	HACD3 (ENSPCIG00000008851) #15	INTS14 (ENSPCIG00000008852) #16	ENSPCIG00000008854 #17	DENND4A (ENSPCIG00000006919) #21	RAB11A (ENSPCIG00000006878) #22	MEGF11 (ENSPCIG00000006843) #24	DIS3L (ENSPCIG00000006827) #25	TIPIN (ENSPCIG00000006818) #26	MAP2K1 (ENSPCIG00000006816) #27	ENSPCIG00000006812 #28	RPL4 (ENSPCIG00000006799) #29	ZWILCH (ENSPCIG00000006798) #30	LCTL (ENSPCIG00000006796) #31	SMAD6 (ENSPCIG00000006792) #32	SMAD3 (ENSPCIG00000014066) #33	AAGAB (ENSPCIG00000014065) #34	IQCH (ENSPCIG00000023221) #35	C15orf61 (ENSPCIG00000023229)	MAP2K5 (ENSPCIG00000023233)	SKOR1 (ENSPCIG00000023240)
Platypus	MODERN SPECIES	16	SPG21 (ENSOANG00000038130)	CLPX (ENSOANG00000009957) #9	PDCD7 (ENSOANG00000039127) #8	KBTBD13 (ENSOANG00000037536)	RASL12 (ENSOANG00000047854)	MTFMT (ENSOANG00000036007)	CILP (ENSOANG00000002696) #10	PARP16 (ENSOANG00000008180) #11	IGDCC3 (ENSOANG00000012253) #12	IGDCC4 (ENSOANG00000011112) #13	DPP8 (ENSOANG00000008346) #14	ENSOANG00000046972 #15	INTS14 (ENSOANG00000001669) #16	ENSOANG00000043682 #17	DENND4A (ENSOANG00000044994) #21	RAB11A (ENSOANG00000038794) #22	MEGF11 (ENSOANG00000037204) #24	DIS3L (ENSOANG00000009753) #25	TIPIN (ENSOANG00000048848) #26	MAP2K1 (ENSOANG00000009750) #27	SNAPC5 (ENSOANG00000039654) #28	RPL4 (ENSOANG00000048650) #29	ZWILCH (ENSOANG00000004555) #30	LCTL (ENSOANG00000004554) #31	SMAD6 (ENSOANG00000042174) #32	SMAD3 (ENSOANG00000037003) #33	AAGAB (ENSOANG00000046695) #34	ENSOANG00000013556 #35	C15orf61 (ENSOANG00000042403)	MAP2K5 (ENSOANG00000013555)	SKOR1 (ENSOANG00000041839)
Sauria	ANCESTRAL SPECIES	10	ENSGT00940000161629	ENSGT00940000160167	ENSGT00510000052431	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00950000182960.b	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00950000186456	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Archelosauria	ANCESTRAL SPECIES	13	ENSGT00940000161629	ENSGT00940000160167	ENSGT00510000052431	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00950000182960.b.f	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00950000186456	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Cryptodira	ANCESTRAL SPECIES	13	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00510000052431	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00950000186456	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Chinese turtle	MODERN SPECIES	1534	UBAP1L (ENSPSIG00000013562) #7	KBTBD13 (ENSPSIG00000000666)	RASL12 (ENSPSIG00000013266)	MTFMT (ENSPSIG00000013256)	CILP (ENSPSIG00000013247) #10	ENSPSIG00000013222	PARP16 (ENSPSIG00000013215) #11	IGDCC3 (ENSPSIG00000013033) #12	IGDCC4 (ENSPSIG00000012679) #13	ENSPSIG00000000654	DPP8 (ENSPSIG00000012529) #14	HACD3 (ENSPSIG00000012431) #15	INTS14 (ENSPSIG00000012238) #16	SLC24A1 (ENSPSIG00000012130) #17	DENND4A (ENSPSIG00000011965) #21	RAB11A (ENSPSIG00000011930) #22	ENSPSIG00000011794 #24	ENSPSIG00000011768 #24	DIS3L (ENSPSIG00000011629) #25	TIPIN (ENSPSIG00000011616) #26	MAP2K1 (ENSPSIG00000011457) #27	RPL4 (ENSPSIG00000011400) #29	ZWILCH (ENSPSIG00000011386) #30	LCTL (ENSPSIG00000011332) #31
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00510000052431	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00950000186456	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Emydidae	ANCESTRAL SPECIES	21	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00510000052431	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764.b #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
painted turtle	MODERN SPECIES	802					MTFMT (ENSCPBG00000014686)	CILP (ENSCPBG00000014676) #10	ENSCPBG00000014672	PARP16 (ENSCPBG00000014669) #11	IGDCC3 (ENSCPBG00000014663) #12	IGDCC4 (ENSCPBG00000014652) #13	DPP8 (ENSCPBG00000014645) #14	HACD3 (ENSCPBG00000014643) #15	INTS14 (ENSCPBG00000014639) #16	SLC24A1 (ENSCPBG00000014637) #17	DENND4A (ENSCPBG00000014626) #21	RAB11A (ENSCPBG00000014614) #22	MEGF11 (ENSCPBG00000014150) #24	DIS3L (ENSCPBG00000014111) #25	ENSCPBG00000014108 #26	MAP2K1 (ENSCPBG00000014102) #27	SNAPC5 (ENSCPBG00000014100) #28	RPL4 (ENSCPBG00000014091) #29	ZWILCH (ENSCPBG00000014089) #30	LCTL (ENSCPBG00000014087) #31	NADSYN1 (ENSCPBG00000014079)	DHCR7 (ENSCPBG00000014076)	ZDHHC13 (ENSCPBG00000014073)	CSRP3 (ENSCPBG00000014072)	E2F8 (ENSCPBG00000014068)	NAV2 (ENSCPBG00000014050)	DBX1 (ENSCPBG00000014043)
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	102	MRPL24 (ENSTMTG00000020554)	METTL25B (ENSTMTG00000020559)	ISG20L2 (ENSTMTG00000020564)	CRABP2 (ENSTMTG00000020566)	ENSTMTG00000020577	ENSTMTG00000020582	BCAN (ENSTMTG00000020597)	HAPLN2 (ENSTMTG00000020622)	RHBG (ENSTMTG00000020629)	MEF2D (ENSTMTG00000020638)	IQGAP3 (ENSTMTG00000020666)	UBQLN4 (ENSTMTG00000020912)	LAMTOR2 (ENSTMTG00000020971)	RAB25 (ENSTMTG00000020976)	ENSTMTG00000020981	ENSTMTG00000020985 #22	MEX3A (ENSTMTG00000020991)	ENSTMTG00000021000	ENSTMTG00000021004	ENSTMTG00000021008	SLC25A44 (ENSTMTG00000021015)	PMF1 (ENSTMTG00000021018)	ENSTMTG00000021022	PAQR6 (ENSTMTG00000021023)	SMG5 (ENSTMTG00000021032)	TMEM79 (ENSTMTG00000021042)	GLMP (ENSTMTG00000021048)	CCT3 (ENSTMTG00000021053)	ARHGEF2 (ENSTMTG00000021070)	ENSTMTG00000021094	RXFP4 (ENSTMTG00000021106)
Three-toed box turtle	MODERN SPECIES	27	UBAP1L (ENSTMTG00000006872) #7	KBTBD13 (ENSTMTG00000006908)	RASL12 (ENSTMTG00000006934)	ENSTMTG00000006996	MTFMT (ENSTMTG00000007020)	CILP (ENSTMTG00000007052) #10	ENSTMTG00000007083	PARP16 (ENSTMTG00000007137) #11	IGDCC3 (ENSTMTG00000007155) #12	IGDCC4 (ENSTMTG00000007233) #13	DPP8 (ENSTMTG00000007513) #14	HACD3 (ENSTMTG00000007567) #15	INTS14 (ENSTMTG00000007590) #16	SLC24A1 (ENSTMTG00000007638) #17	DENND4A (ENSTMTG00000007680) #21	RAB11A (ENSTMTG00000007735) #22	MEGF11 (ENSTMTG00000007756) #24	DIS3L (ENSTMTG00000007906) #25	ENSTMTG00000007940 #26	MAP2K1 (ENSTMTG00000007966) #27	ENSTMTG00000007987	ENSTMTG00000008003 #29	ZWILCH (ENSTMTG00000008057) #30	LCTL (ENSTMTG00000008371) #31	SMAD6 (ENSTMTG00000008403) #32	SMAD3 (ENSTMTG00000008413) #33	AAGAB (ENSTMTG00000008426) #34	IQCH (ENSTMTG00000008467) #35	ENSTMTG00000008700	MAP2K5 (ENSTMTG00000008725)	SKOR1 (ENSTMTG00000008807)
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00960000189242	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00960000193170	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00950000186456	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Goode s thornscrub tortoise	MODERN SPECIES	1	UBAP1L (ENSGEVG00005006777) #7	KBTBD13 (ENSGEVG00005006765)	ENSGEVG00005006705	ENSGEVG00005006652	MTFMT (ENSGEVG00005006568)	CILP (ENSGEVG00005006481) #10	ENSGEVG00005006396	PARP16 (ENSGEVG00005006356) #11	IGDCC3 (ENSGEVG00005006282) #12	IGDCC4 (ENSGEVG00005006195) #13	DPP8 (ENSGEVG00005006156) #14	HACD3 (ENSGEVG00005006129) #15	INTS14 (ENSGEVG00005006084) #16	SLC24A1 (ENSGEVG00005006015) #17	DENND4A (ENSGEVG00005005910) #21	RAB11A (ENSGEVG00005005859) #22	ENSGEVG00005005833	MEGF11 (ENSGEVG00005005633) #24	DIS3L (ENSGEVG00005005574) #25	TIPIN (ENSGEVG00005005547) #26	MAP2K1 (ENSGEVG00005005509) #27	SNAPC5 (ENSGEVG00005005478) #28	RPL4 (ENSGEVG00005005421) #29	ZWILCH (ENSGEVG00005005317) #30	LCTL (ENSGEVG00005005207) #31	SMAD6 (ENSGEVG00005005184) #32	SMAD3 (ENSGEVG00005005160) #33	AAGAB (ENSGEVG00005005135) #34	ENSGEVG00005005107	IQCH (ENSGEVG00005005068) #35	C15orf61 (ENSGEVG00005005051)
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	1671	ENSCABG00000017751	ENSCABG00000017754	ENSCABG00000017759	ENSCABG00000017765	HAPLN2 (ENSCABG00000017810)	RHBG (ENSCABG00000017984)	MEF2D (ENSCABG00000017991)	IQGAP3 (ENSCABG00000018011)	NAXE (ENSCABG00000018099)	ENSCABG00000018102	ENSCABG00000018117 #18	UBQLN4 (ENSCABG00000018121)	LAMTOR2 (ENSCABG00000018126)	RAB25 (ENSCABG00000018130)	ENSCABG00000018133	ENSCABG00000018135 #22	MEX3A (ENSCABG00000018137)	LMNA (ENSCABG00000018140)	SEMA4A (ENSCABG00000018143)	SLC25A44 (ENSCABG00000018148)	PMF1 (ENSCABG00000018150)	ENSCABG00000018151	ENSCABG00000018152	SMG5 (ENSCABG00000018154)	TMEM79 (ENSCABG00000018156)	ENSCABG00000018157	ENSCABG00000018158	CCT3 (ENSCABG00000018159)	SSR2 (ENSCABG00000018160)	ARHGEF2 (ENSCABG00000018164)	ENSCABG00000018294
Abingdon island giant tortoise	MODERN SPECIES	2548	CLPX (ENSCABG00000013633) #9	UBAP1L (ENSCABG00000013636) #7	KBTBD13 (ENSCABG00000013639)	RASL12 (ENSCABG00000013642)	MTFMT (ENSCABG00000013646)	CILP (ENSCABG00000013652) #10	ENSCABG00000013655	PARP16 (ENSCABG00000013665) #11	IGDCC3 (ENSCABG00000013669) #12	IGDCC4 (ENSCABG00000013673) #13	DPP8 (ENSCABG00000013708) #14	HACD3 (ENSCABG00000015923) #15	INTS14 (ENSCABG00000015930) #16	SLC24A1 (ENSCABG00000015939) #17	DENND4A (ENSCABG00000015963) #21	RAB11A (ENSCABG00000016119) #22	MEGF11 (ENSCABG00000016122) #24	ENSCABG00000016124	DIS3L (ENSCABG00000016126) #25	TIPIN (ENSCABG00000016127) #26	MAP2K1 (ENSCABG00000016130) #27	SNAPC5 (ENSCABG00000016133) #28	RPL4 (ENSCABG00000016134) #29	ZWILCH (ENSCABG00000016148) #30	LCTL (ENSCABG00000016203) #31	SMAD6 (ENSCABG00000016207) #32
Archosauria	ANCESTRAL SPECIES	9	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00950000182960.b.f	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Australian saltwater crocodile	MODERN SPECIES	31	KBTBD13 (ENSCPRG00005000153)	RASL12 (ENSCPRG00005000165)	MTFMT (ENSCPRG00005000206)	CILP (ENSCPRG00005000226) #10	GNRHR (ENSCPRG00005000240)	PARP16 (ENSCPRG00005000279) #11	ENSCPRG00005000326	IGDCC3 (ENSCPRG00005000353) #12	IGDCC4 (ENSCPRG00005000364) #13	DPP8 (ENSCPRG00005000410) #14	HACD3 (ENSCPRG00005000454) #15	INTS14 (ENSCPRG00005000472) #16	ENSCPRG00005000476 #17	ENSCPRG00005000484 #17	DENND4A (ENSCPRG00005000499) #21	RAB11A (ENSCPRG00005000532) #22	MEGF11 (ENSCPRG00005000552) #24	DIS3L (ENSCPRG00005000594) #25	TIPIN (ENSCPRG00005000607) #26	MAP2K1 (ENSCPRG00005000623) #27	SNAPC5 (ENSCPRG00005000626) #28	RPL4 (ENSCPRG00005000630) #29	ZWILCH (ENSCPRG00005000651) #30	LCTL (ENSCPRG00005000669) #31	SMAD6 (ENSCPRG00005000698) #32	SMAD3 (ENSCPRG00005000730) #33	AAGAB (ENSCPRG00005000756) #34	IQCH (ENSCPRG00005000770) #35	C15orf61 (ENSCPRG00005000791)	MAP2K5 (ENSCPRG00005000813)	PIAS1 (ENSCPRG00005000826)
Aves	ANCESTRAL SPECIES	14	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
African ostrich	MODERN SPECIES	834	SPG21 (ENSSCUG00000013243)	CLPX (ENSSCUG00000013235) #9	KBTBD13 (ENSSCUG00000013233)	ENSSCUG00000013230	MTFMT (ENSSCUG00000013228)	CILP (ENSSCUG00000013224) #10	ENSSCUG00000013219	PARP16 (ENSSCUG00000013209) #11	IGDCC3 (ENSSCUG00000013201) #12	IGDCC4 (ENSSCUG00000013192) #13	DPP8 (ENSSCUG00000013188) #14	HACD3 (ENSSCUG00000013184) #15	INTS14 (ENSSCUG00000013179) #16	SLC24A1 (ENSSCUG00000013178) #17	DENND4A (ENSSCUG00000013174) #21	RAB11A (ENSSCUG00000013170) #22	MEGF11 (ENSSCUG00000013159) #24	DIS3L (ENSSCUG00000013154) #25	TIPIN (ENSSCUG00000013149) #26
Neognathae	ANCESTRAL SPECIES	11	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Neognathae_b	ANCESTRAL SPECIES	13	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Neognathae_c	ANCESTRAL SPECIES	15	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Golden eagle	MODERN SPECIES	21	PDCD7 (ENSACCG00020008848) #8	UBAP1L (ENSACCG00020008862) #7	KBTBD13 (ENSACCG00020008880)	RASL12 (ENSACCG00020008888)	MTFMT (ENSACCG00020008908)	CILP (ENSACCG00020008937) #10	ENSACCG00020008952	PARP16 (ENSACCG00020008969) #11	IGDCC3 (ENSACCG00020009002) #12	IGDCC4 (ENSACCG00020009048) #13	DPP8 (ENSACCG00020009512) #14	HACD3 (ENSACCG00020009900) #15	INTS14 (ENSACCG00020009917) #16	SLC24A1 (ENSACCG00020009936) #17	DENND4A (ENSACCG00020009959) #21	RAB11A (ENSACCG00020009992) #22	MEGF11 (ENSACCG00020010081) #24	DIS3L (ENSACCG00020010156) #25	TIPIN (ENSACCG00020010172) #26	MAP2K1 (ENSACCG00020010187) #27	SNAPC5 (ENSACCG00020010201) #28	RPL4 (ENSACCG00020000310) #29	ZWILCH (ENSACCG00020000434) #30	LCTL (ENSACCG00020000480) #31	SMAD6 (ENSACCG00020000507) #32	SMAD3 (ENSACCG00020000522) #33	AAGAB (ENSACCG00020000560) #34	C15orf61 (ENSACCG00020000661)	MAP2K5 (ENSACCG00020000704)	SKOR1 (ENSACCG00020000753)	PIAS1 (ENSACCG00020000781)
Kakapo	MODERN SPECIES	1	UBAP1L (ENSSHBG00005014999) #7	KBTBD13 (ENSSHBG00005014990)	RASL12 (ENSSHBG00005014984)	MTFMT (ENSSHBG00005014974)	CILP (ENSSHBG00005014963) #10	ENSSHBG00005014956	PARP16 (ENSSHBG00005014952) #11	IGDCC3 (ENSSHBG00005014931) #12	IGDCC4 (ENSSHBG00005014913) #13	ENSSHBG00005014900	DPP8 (ENSSHBG00005009877) #14	HACD3 (ENSSHBG00005009669) #15	INTS14 (ENSSHBG00005009649) #16	SLC24A1 (ENSSHBG00005009620) #17	DENND4A (ENSSHBG00005009346) #21	RAB11A (ENSSHBG00005009201) #22	ENSSHBG00005009181 #24	ENSSHBG00005009158 #24	DIS3L (ENSSHBG00005009084) #25	TIPIN (ENSSHBG00005009068) #26	MAP2K1 (ENSSHBG00005009053) #27	SNAPC5 (ENSSHBG00005009047) #28	RPL4 (ENSSHBG00005009017) #29	ZWILCH (ENSSHBG00005008951) #30	LCTL (ENSSHBG00005008922) #31	SMAD6 (ENSSHBG00005000779) #32	SMAD3 (ENSSHBG00005000770) #33	AAGAB (ENSSHBG00005000737) #34	IQCH (ENSSHBG00005000728) #35	C15orf61 (ENSSHBG00005000716)	MAP2K5 (ENSSHBG00005000699)
Passeriformes	ANCESTRAL SPECIES	12	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Great tit	MODERN SPECIES	1	PDCD7 (ENSPMJG00000009809) #8	UBAP1L (ENSPMJG00000009813) #7	KBTBD13 (ENSPMJG00000009814)	RASL12 (ENSPMJG00000009816)	MTFMT (ENSPMJG00000009817)	CILP (ENSPMJG00000009819) #10	ENSPMJG00000009825	PARP16 (ENSPMJG00000009828) #11	IGDCC3 (ENSPMJG00000009863) #12	IGDCC4 (ENSPMJG00000009904) #13	DPP8 (ENSPMJG00000009912) #14	HACD3 (ENSPMJG00000009915) #15	INTS14 (ENSPMJG00000009916) #16	SLC24A1 (ENSPMJG00000009917) #17	DENND4A (ENSPMJG00000009918) #21	RAB11A (ENSPMJG00000009921) #22	MEGF11 (ENSPMJG00000009924) #24	DIS3L (ENSPMJG00000009931) #25	TIPIN (ENSPMJG00000009939) #26	MAP2K1 (ENSPMJG00000009964) #27	SNAPC5 (ENSPMJG00000009967) #28	RPL4 (ENSPMJG00000009971) #29	ZWILCH (ENSPMJG00000009977) #30	LCTL (ENSPMJG00000009979) #31	SMAD6 (ENSPMJG00000009983) #32	SMAD3 (ENSPMJG00000009991) #33	AAGAB (ENSPMJG00000009992) #34	IQCH (ENSPMJG00000009995) #35	C15orf61 (ENSPMJG00000009998)	MAP2K5 (ENSPMJG00000010012)	PIAS1 (ENSPMJG00000010016)
Passeriformes_d	ANCESTRAL SPECIES	12	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440	ENSGT01030000234539.a.a.b.a.b
Passeriformes_g	ANCESTRAL SPECIES	13	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT01060000252718	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Medium ground finch	MODERN SPECIES	69	CLPX (ENSGFOG00000010023) #9	UBAP1L (ENSGFOG00000010035) #7	KBTBD13 (ENSGFOG00000010042)	RASL12 (ENSGFOG00000010043)	MTFMT (ENSGFOG00000010047)	CILP (ENSGFOG00000010056) #10	GNRHR (ENSGFOG00000010060)	PARP16 (ENSGFOG00000010067) #11	IGDCC3 (ENSGFOG00000010086) #12	IGDCC4 (ENSGFOG00000010130) #13	DPP8 (ENSGFOG00000010227) #14	HACD3 (ENSGFOG00000010246) #15	INTS14 (ENSGFOG00000010255) #16	SLC24A1 (ENSGFOG00000010269) #17	DENND4A (ENSGFOG00000010346) #21	RAB11A (ENSGFOG00000011557) #22	MEGF11 (ENSGFOG00000011585) #24	DIS3L (ENSGFOG00000011782) #25	TIPIN (ENSGFOG00000011794) #26	MAP2K1 (ENSGFOG00000011801) #27	ENSGFOG00000011806	RPL4 (ENSGFOG00000011811) #29	ZWILCH (ENSGFOG00000011836) #30	LCTL (ENSGFOG00000011846) #31	SMAD6 (ENSGFOG00000011856) #32	SMAD3 (ENSGFOG00000011865) #33	ENSGFOG00000011872 #34	ENSGFOG00000011876 #34	IQCH (ENSGFOG00000011884) #35	ENSGFOG00000011897	MAP2K5 (ENSGFOG00000011911)
Passeroidea	ANCESTRAL SPECIES	12	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT01060000252718	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00960000188521	ENSGT00940000157505	ENSGT00940000158440
Zebra finch	MODERN SPECIES	1	CLPX (ENSTGUG00000009033) #9	PDCD7 (ENSTGUG00000009069) #8	KBTBD13 (ENSTGUG00000020316)	RASL12 (ENSTGUG00000009081)	MTFMT (ENSTGUG00000009090)	CILP (ENSTGUG00000009096) #10	GNRHR (ENSTGUG00000020538)	PARP16 (ENSTGUG00000009103) #11	IGDCC3 (ENSTGUG00000009117) #12	IGDCC4 (ENSTGUG00000009136) #13	DPP8 (ENSTGUG00000009145) #14	HACD3 (ENSTGUG00000009174) #15	INTS14 (ENSTGUG00000009182) #16	SLC24A1 (ENSTGUG00000009206) #17	DENND4A (ENSTGUG00000009220) #21	RAB11A (ENSTGUG00000009279) #22	MEGF11 (ENSTGUG00000009293) #24	DIS3L (ENSTGUG00000009315) #25	TIPIN (ENSTGUG00000009358) #26	ENSTGUG00000019914	MAP2K1 (ENSTGUG00000009363) #27	RPL4 (ENSTGUG00000009403) #29	ZWILCH (ENSTGUG00000009439) #30	LCTL (ENSTGUG00000009457) #31	SMAD6 (ENSTGUG00000009467) #32	SMAD3 (ENSTGUG00000009470) #33	AAGAB (ENSTGUG00000009497) #34	IQCH (ENSTGUG00000009504) #35	ENSTGUG00000009527	MAP2K5 (ENSTGUG00000009531)	ENSTGUG00000025021
Common canary	MODERN SPECIES	12	PDCD7 (ENSSCAG00000010101) #8	UBAP1L (ENSSCAG00000010105) #7	KBTBD13 (ENSSCAG00000010108)	RASL12 (ENSSCAG00000010110)	MTFMT (ENSSCAG00000010115)	CILP (ENSSCAG00000010128) #10	GNRHR (ENSSCAG00000010133)	PARP16 (ENSSCAG00000010143) #11	IGDCC3 (ENSSCAG00000010169) #12	IGDCC4 (ENSSCAG00000010185) #13	DPP8 (ENSSCAG00000010189) #14	HACD3 (ENSSCAG00000010199) #15	INTS14 (ENSSCAG00000010200) #16	SLC24A1 (ENSSCAG00000010206) #17	DENND4A (ENSSCAG00000010214) #21	RAB11A (ENSSCAG00000010226) #22	MEGF11 (ENSSCAG00000010255) #24	DIS3L (ENSSCAG00000010324) #25	TIPIN (ENSSCAG00000010328) #26	MAP2K1 (ENSSCAG00000010333) #27	ENSSCAG00000010341	RPL4 (ENSSCAG00000010344) #29	ZWILCH (ENSSCAG00000010364) #30	LCTL (ENSSCAG00000010374) #31	ENSSCAG00000010394	ENSSCAG00000010404	SMAD6 (ENSSCAG00000010407) #32	SMAD3 (ENSSCAG00000010414) #33	AAGAB (ENSSCAG00000010418) #34	IQCH (ENSSCAG00000010432) #35	ENSSCAG00000010438
Flycatcher	MODERN SPECIES	1	PDCD7 (ENSFALG00000010138) #8	UBAP1L (ENSFALG00000010134) #7	KBTBD13 (ENSFALG00000015316)	RASL12 (ENSFALG00000010132)	MTFMT (ENSFALG00000010118)	CILP (ENSFALG00000010116) #10	ENSFALG00000010114	PARP16 (ENSFALG00000010108) #11	IGDCC3 (ENSFALG00000010105) #12	IGDCC4 (ENSFALG00000010102) #13	DPP8 (ENSFALG00000010098) #14	HACD3 (ENSFALG00000010085) #15	INTS14 (ENSFALG00000010068) #16	SLC24A1 (ENSFALG00000010063) #17	DENND4A (ENSFALG00000010056) #21	RAB11A (ENSFALG00000010052) #22	MEGF11 (ENSFALG00000010040) #24	DIS3L (ENSFALG00000010033) #25	TIPIN (ENSFALG00000010027) #26	MAP2K1 (ENSFALG00000028438) #27	SNAPC5 (ENSFALG00000025446) #28	ENSFALG00000028967	ENSFALG00000009988	ENSFALG00000009983	ENSFALG00000009980	ENSFALG00000009958	ENSFALG00000009937	ENSFALG00000009927	ENSFALG00000009916	ENSFALG00000029080	ENSFALG00000009902
Galloanserae	ANCESTRAL SPECIES	10	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Phasianidae	ANCESTRAL SPECIES	11	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440	ENSGT01030000234539.a.a.b.a.b
Japanese quail	MODERN SPECIES	1	PDCD7 (ENSCJPG00005020752) #8	UBAP1L (ENSCJPG00005020753) #7	KBTBD13 (ENSCJPG00005020754)	RASL12 (ENSCJPG00005020755)	MTFMT (ENSCJPG00005020757)	CILP (ENSCJPG00005020758) #10	ENSCJPG00005020760	PARP16 (ENSCJPG00005020761) #11	IGDCC3 (ENSCJPG00005020762) #12	IGDCC4 (ENSCJPG00005020763) #13	DPP8 (ENSCJPG00005020764) #14	HACD3 (ENSCJPG00005020802) #15	INTS14 (ENSCJPG00005020803) #16	SLC24A1 (ENSCJPG00005020804) #17	DENND4A (ENSCJPG00005020807) #21	RAB11A (ENSCJPG00005020908) #22	MEGF11 (ENSCJPG00005020910) #24	DIS3L (ENSCJPG00005020941) #25	TIPIN (ENSCJPG00005020942) #26	MAP2K1 (ENSCJPG00005020944) #27	SNAPC5 (ENSCJPG00005020958) #28	RPL4 (ENSCJPG00005020961) #29	ZWILCH (ENSCJPG00005020968) #30	SMAD6 (ENSCJPG00005020969) #32	SMAD3 (ENSCJPG00005020970) #33	AAGAB (ENSCJPG00005020971) #34	IQCH (ENSCJPG00005020972) #35	C15orf61 (ENSCJPG00005020973)	MAP2K5 (ENSCJPG00005020975)	SKOR1 (ENSCJPG00005020991)	PIAS1 (ENSCJPG00005020993)
Phasianidae_b	ANCESTRAL SPECIES	11	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440	ENSGT01030000234539.a.a.b.a.b
Turkey	MODERN SPECIES	3	CLPX (ENSMGAG00000009513) #9	UBAP1L (ENSMGAG00000017613) #7	KBTBD13 (ENSMGAG00000009546)	RASL12 (ENSMGAG00000009547)	MTFMT (ENSMGAG00000009584)	CILP (ENSMGAG00000009589) #10	ENSMGAG00000009590	PARP16 (ENSMGAG00000009579) #11	IGDCC3 (ENSMGAG00000009604) #12	IGDCC4 (ENSMGAG00000009630) #13	DPP8 (ENSMGAG00000009649) #14	HACD3 (ENSMGAG00000009683) #15	INTS14 (ENSMGAG00000009693) #16	SLC24A1 (ENSMGAG00000009715) #17	DENND4A (ENSMGAG00000009728) #21	RAB11A (ENSMGAG00000009797) #22	MEGF11 (ENSMGAG00000009776) #24	DIS3L (ENSMGAG00000009805) #25	TIPIN (ENSMGAG00000009857) #26	MAP2K1 (ENSMGAG00000009864) #27	ENSMGAG00000019153	RPL4 (ENSMGAG00000009822) #29	ZWILCH (ENSMGAG00000009851) #30	SMAD6 (ENSMGAG00000009875) #32	SMAD3 (ENSMGAG00000009879) #33	AAGAB (ENSMGAG00000009906) #34	IQCH (ENSMGAG00000009928) #35	C15orf61 (ENSMGAG00000022676)	MAP2K5 (ENSMGAG00000009937)	PIAS1 (ENSMGAG00000009994)	CALML4 (ENSMGAG00000010048)
Chicken	MODERN SPECIES	1	PDCD7 (ENSGALG00010017616) #8	UBAP1L (ENSGALG00010017620) #7	KBTBD13 (ENSGALG00010017654)	RASL12 (ENSGALG00010017679)	MTFMT (ENSGALG00010017693)	CILP (ENSGALG00010017715) #10	GNRHR (ENSGALG00010017753)	PARP16 (ENSGALG00010017761) #11	IGDCC3 (ENSGALG00010017764) #12	IGDCC4 (ENSGALG00010017782) #13	DPP8 (ENSGALG00010017805) #14	HACD3 (ENSGALG00010017811) #15	VWA9 (ENSGALG00010017815) #16	SLC24A1 (ENSGALG00010017819) #17	DENND4A (ENSGALG00010017830) #21	RAB11A (ENSGALG00010017870) #22	MEGF11 (ENSGALG00010017904) #24	DIS3L (ENSGALG00010017941) #25	TIPIN (ENSGALG00010017956) #26	MAP2K1 (ENSGALG00010018000) #27	SNAPC5 (ENSGALG00010018020) #28	RPL4 (ENSGALG00010018036) #29	ZWILCH (ENSGALG00010018042) #30	SMAD6 (ENSGALG00010018054) #32	SMAD3 (ENSGALG00010018099) #33	AAGAB (ENSGALG00010018150) #34	IQCH (ENSGALG00010018192) #35	C15orf61 (ENSGALG00010016968)	MAP2K5 (ENSGALG00010017039)	SKOR1 (ENSGALG00010017146)	PIAS1 (ENSGALG00010017264)
Anatidae	ANCESTRAL SPECIES	36	ENSGT00390000017625 #9	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT01030000234539.a.a.b.a.b
Pink-footed goose	MODERN SPECIES	52	UBAP1L (ENSABRG00000009337) #7	KBTBD13 (ENSABRG00000009312)	RASL12 (ENSABRG00000009304)	MTFMT (ENSABRG00000009286)	CILP (ENSABRG00000009276) #10	GNRHR (ENSABRG00000009256)	PARP16 (ENSABRG00000009242) #11	IGDCC3 (ENSABRG00000009234) #12	IGDCC4 (ENSABRG00000009006) #13	DPP8 (ENSABRG00000008939) #14	ENSABRG00000008924	HACD3 (ENSABRG00000008901) #15	INTS14 (ENSABRG00000008861) #16	SLC24A1 (ENSABRG00000008827) #17	DENND4A (ENSABRG00000008768) #21	RAB11A (ENSABRG00000008748) #22	MEGF11 (ENSABRG00000008723) #24	DIS3L (ENSABRG00000008682) #25	TIPIN (ENSABRG00000008669) #26	ENSABRG00000008668	MAP2K1 (ENSABRG00000008635) #27	SNAPC5 (ENSABRG00000008617) #28	RPL4 (ENSABRG00000008586) #29	ZWILCH (ENSABRG00000008567) #30	LCTL (ENSABRG00000008534) #31	SMAD6 (ENSABRG00000008516) #32	SMAD3 (ENSABRG00000008486) #33	AAGAB (ENSABRG00000008468) #34	IQCH (ENSABRG00000008459) #35	C15orf61 (ENSABRG00000008455)	MAP2K5 (ENSABRG00000008420)
Duck	DUPLICATION
Duck	MODERN SPECIES	2008																ENSAPLG00000027129 #22
Duck	MODERN SPECIES	2	UBAP1L (ENSAPLG00000023567) #7	KBTBD13 (ENSAPLG00000015571)	RASL12 (ENSAPLG00000015628)	PARP16 (ENSAPLG00000015958) #11	ENSAPLG00000022299	MTFMT (ENSAPLG00000015719)	CILP (ENSAPLG00000026330) #10	GNRHR (ENSAPLG00000024770)	IGDCC3 (ENSAPLG00000016111) #12	IGDCC4 (ENSAPLG00000013127) #13	DPP8 (ENSAPLG00000013345) #14	HACD3 (ENSAPLG00000013863) #15	INTS14 (ENSAPLG00000014064) #16	SLC24A1 (ENSAPLG00000014168) #17	DENND4A (ENSAPLG00000014243) #21	RAB11A (ENSAPLG00000014962) #22	MEGF11 (ENSAPLG00000015095) #24	DIS3L (ENSAPLG00000015294) #25	TIPIN (ENSAPLG00000015332) #26	MAP2K1 (ENSAPLG00000015480) #27	SNAPC5 (ENSAPLG00000001863) #28	RPL4 (ENSAPLG00000015853) #29	ZWILCH (ENSAPLG00000000968) #30	ENSAPLG00000028241 #31	SMAD6 (ENSAPLG00000000997) #32	SMAD3 (ENSAPLG00000007006) #33	AAGAB (ENSAPLG00000007346) #34	IQCH (ENSAPLG00000007592) #35	C15orf61 (ENSAPLG00000001076)	MAP2K5 (ENSAPLG00000007755)	ENSAPLG00000002495
Lepidosauria	ANCESTRAL SPECIES	19	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00950000182960.b	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00950000186456	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Episquamata	ANCESTRAL SPECIES	9	ENSGT00390000017625 #9	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00950000186456	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Toxicofera	ANCESTRAL SPECIES	40	ENSGT00390000017625 #9	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00950000186456	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Elapidae	ANCESTRAL SPECIES	12	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000156291	ENSGT00940000157540.A	ENSGT00940000160523	ENSGT00510000048902.b	ENSGT00940000156682	ENSGT00940000159268.d	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b.d #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00950000186456	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Indian cobra	MODERN SPECIES	14	PARP16 (ENSNNAG00000004225) #11	IGDCC3 (ENSNNAG00000004271) #12	IGDCC4 (ENSNNAG00000004504) #13	MCTP2 (ENSNNAG00000004568)	NR2F2 (ENSNNAG00000004668)	ENSNNAG00000004739	ENSNNAG00000004760	ARRDC4 (ENSNNAG00000004766)	ENSNNAG00000004785	IGF1R (ENSNNAG00000004949)	SYNM (ENSNNAG00000007433)	DPP8 (ENSNNAG00000007591) #14	HACD3 (ENSNNAG00000009979) #15	INTS14 (ENSNNAG00000010021) #16	DENND4A (ENSNNAG00000010330) #21	RAB11A (ENSNNAG00000010435) #22	MEGF11 (ENSNNAG00000010468) #24	DIS3L (ENSNNAG00000010799) #25	TIPIN (ENSNNAG00000010924) #26	MAP2K1 (ENSNNAG00000010963) #27	SNAPC5 (ENSNNAG00000011012) #28	RPL4 (ENSNNAG00000011026) #29	ZWILCH (ENSNNAG00000011099) #30	SMAD6 (ENSNNAG00000011230) #32	SMAD3 (ENSNNAG00000011272) #33	AAGAB (ENSNNAG00000011287) #34	ENSNNAG00000011356	IQCH (ENSNNAG00000011412) #35	C15orf61 (ENSNNAG00000011603)	MAP2K5 (ENSNNAG00000011631)	SKOR1 (ENSNNAG00000011796)
Elapidae_a	ANCESTRAL SPECIES	37	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000156291	ENSGT00940000157540.A	ENSGT00940000160523	ENSGT00940000156682	ENSGT00940000159268.d	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT00940000155836.B.m #21	ENSGT00940000155836.B.n #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b.d #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT01030000234539.a.a.b.a.b	ENSGT00940000157859	ENSGT00400000022240
Acanthophiinae	ANCESTRAL SPECIES	37	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000156291	ENSGT00940000157540.A	ENSGT00940000160523	ENSGT00940000156682	ENSGT00940000159268.d	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT00940000155836.B.m #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b.d #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT01030000234539.a.a.b.a.b	ENSGT00940000157859	ENSGT00400000022240
Mainland tiger snake	MODERN SPECIES	49	KBTBD13 (ENSNSUG00000002870)	RASL12 (ENSNSUG00000002872)	CILP (ENSNSUG00000002889) #10	PARP16 (ENSNSUG00000002898) #11	IGDCC3 (ENSNSUG00000002912) #12	IGDCC4 (ENSNSUG00000002913) #13	MCTP2 (ENSNSUG00000002916)	NR2F2 (ENSNSUG00000002923)	ARRDC4 (ENSNSUG00000002927)	IGF1R (ENSNSUG00000002935)	SYNM (ENSNSUG00000002939)	DPP8 (ENSNSUG00000002945) #14	HACD3 (ENSNSUG00000003778) #15	INTS14 (ENSNSUG00000003780) #16	ENSNSUG00000003906 #21	RAB11A (ENSNSUG00000003908) #22	MEGF11 (ENSNSUG00000003910) #24	ENSNSUG00000003922 #25	TIPIN (ENSNSUG00000003924) #26	MAP2K1 (ENSNSUG00000003931) #27	SNAPC5 (ENSNSUG00000003966) #28	ENSNSUG00000003967 #29	ZWILCH (ENSNSUG00000003975) #30	SMAD3 (ENSNSUG00000003978) #33	AAGAB (ENSNSUG00000003997) #34	C15orf61 (ENSNSUG00000004019)	MAP2K5 (ENSNSUG00000004022)
Eastern brown snake	MODERN SPECIES	43	RASL12 (ENSPTXG00000015757)	MTFMT (ENSPTXG00000015656)	CILP (ENSPTXG00000015654) #10	PARP16 (ENSPTXG00000015653) #11	IGDCC3 (ENSPTXG00000015652) #12	IGDCC4 (ENSPTXG00000015649) #13	MCTP2 (ENSPTXG00000015590)	NR2F2 (ENSPTXG00000015588)	ARRDC4 (ENSPTXG00000015586)	IGF1R (ENSPTXG00000015585)	SYNM (ENSPTXG00000015583)	DPP8 (ENSPTXG00000015569) #14	HACD3 (ENSPTXG00000015568) #15	INTS14 (ENSPTXG00000015567) #16	DENND4A (ENSPTXG00000015565) #21	RAB11A (ENSPTXG00000015564) #22	MEGF11 (ENSPTXG00000015560) #24	DIS3L (ENSPTXG00000015557) #25	TIPIN (ENSPTXG00000015555) #26	MAP2K1 (ENSPTXG00000015554) #27	SNAPC5 (ENSPTXG00000015552) #28	RPL4 (ENSPTXG00000015545) #29	SMAD6 (ENSPTXG00000015543) #32	SMAD3 (ENSPTXG00000015540) #33	AAGAB (ENSPTXG00000015539) #34	IQCH (ENSPTXG00000015536) #35	C15orf61 (ENSPTXG00000015534)	MAP2K5 (ENSPTXG00000015531)	ENSPTXG00000015529	PIAS1 (ENSPTXG00000015528)	CALML4 (ENSPTXG00000015527)
Blue-lipped sea krait	MODERN SPECIES	619																ENSLLTG00000018361 #22
Lizard	MODERN SPECIES	1115						ENSACAG00000041474	ENSACAG00000043295 #12	IGDCC4 (ENSACAG00000004850) #13	DPP8 (ENSACAG00000004752) #14	HACD3 (ENSACAG00000004719) #15	INTS14 (ENSACAG00000004673) #16	DENND4A (ENSACAG00000004531) #21	ENSACAG00000034809	ENSACAG00000041175	ENSACAG00000045369	RAB11A (ENSACAG00000004479) #22	MEGF11 (ENSACAG00000004442) #24
Laterata	ANCESTRAL SPECIES	16	ENSGT00390000017625 #9	ENSGT00390000017392 #8	ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440	ENSGT01030000234539.a.a.b.a.b
Common wall lizard	MODERN SPECIES	5	UBAP1L (ENSPMRG00000013988) #7	KBTBD13 (ENSPMRG00000013998)	RASL12 (ENSPMRG00000014003)	MTFMT (ENSPMRG00000014009)	CILP (ENSPMRG00000014021) #10	GNRHR (ENSPMRG00000014032)	PARP16 (ENSPMRG00000014048) #11	IGDCC3 (ENSPMRG00000014065) #12	IGDCC4 (ENSPMRG00000014090) #13	DPP8 (ENSPMRG00000014125) #14	ENSPMRG00000014139	ENSPMRG00000014144	HACD3 (ENSPMRG00000014152) #15	INTS14 (ENSPMRG00000014159) #16	DENND4A (ENSPMRG00000014169) #21	RAB11A (ENSPMRG00000014183) #22	MEGF11 (ENSPMRG00000014263) #24	ENSPMRG00000014534	ENSPMRG00000014537	DIS3L (ENSPMRG00000014540) #25	TIPIN (ENSPMRG00000014546) #26	MAP2K1 (ENSPMRG00000014555) #27	SNAPC5 (ENSPMRG00000014563) #28	RPL4 (ENSPMRG00000014570) #29	ZWILCH (ENSPMRG00000014603) #30	SMAD6 (ENSPMRG00000014612) #32	ENSPMRG00000014621 #33	AAGAB (ENSPMRG00000014629) #34	IQCH (ENSPMRG00000014635) #35	C15orf61 (ENSPMRG00000014653)	MAP2K5 (ENSPMRG00000014661)
Argentine black and white tegu	MODERN SPECIES	46	CLPX (ENSSMRG00000021604) #9	PDCD7 (ENSSMRG00000021603) #8	UBAP1L (ENSSMRG00000021602) #7	KBTBD13 (ENSSMRG00000021601)	RASL12 (ENSSMRG00000021600)	MTFMT (ENSSMRG00000021598)	CILP (ENSSMRG00000021597) #10	ENSSMRG00000021596	PARP16 (ENSSMRG00000021595) #11	IGDCC3 (ENSSMRG00000021594) #12	IGDCC4 (ENSSMRG00000021593) #13	DPP8 (ENSSMRG00000021592) #14	HACD3 (ENSSMRG00000021591) #15	INTS14 (ENSSMRG00000021590) #16	DENND4A (ENSSMRG00000021589) #21	RAB11A (ENSSMRG00000021588) #22	MEGF11 (ENSSMRG00000021585) #24	DIS3L (ENSSMRG00000021584) #25	TIPIN (ENSSMRG00000021582) #26	MAP2K1 (ENSSMRG00000021581) #27	SNAPC5 (ENSSMRG00000021580) #28	RPL4 (ENSSMRG00000021574) #29	ZWILCH (ENSSMRG00000021573) #30	SMAD6 (ENSSMRG00000021572) #32	SMAD3 (ENSSMRG00000021571) #33	AAGAB (ENSSMRG00000021570) #34	IQCH (ENSSMRG00000021569) #35	C15orf61 (ENSSMRG00000021568)	MAP2K5 (ENSSMRG00000021567)	SKOR1 (ENSSMRG00000021566)	PIAS1 (ENSSMRG00000021565)
tuatara	MODERN SPECIES	842												ENSSPUG00000013730 #21	ENSSPUG00000013724 #21	ENSSPUG00000013716 #21	ENSSPUG00000013706 #21	RAB11A (ENSSPUG00000013698) #22	MEGF11 (ENSSPUG00000013679) #24	DIS3L (ENSSPUG00000013652) #25	TIPIN (ENSSPUG00000013622) #26	MAP2K1 (ENSSPUG00000013607) #27	SNAPC5 (ENSSPUG00000013599) #28	RPL4 (ENSSPUG00000013570) #29	ENSSPUG00000013505 #30	LCTL (ENSSPUG00000013481) #31	SMAD6 (ENSSPUG00000013465) #32	SMAD3 (ENSSPUG00000013429) #33	AAGAB (ENSSPUG00000013388) #34	C15orf61 (ENSSPUG00000013351)	MAP2K5 (ENSSPUG00000013303)	PIAS1 (ENSSPUG00000013205)	CALML4 (ENSSPUG00000013190)
Anura	ANCESTRAL SPECIES		ENSGT00390000008092.b #7	ENSGT00940000161629	ENSGT00940000160167	ENSGT00390000017828	ENSGT00390000018225.A	ENSGT00390000008152.B.b #10	ENSGT01050000244841.A.a.a	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000010331 #28	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000158146 #32	ENSGT00940000153499.b.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440
Frog	MODERN SPECIES	3	ubap1l (ENSXETG00000036190) #7	kbtbd13 (ENSXETG00000006653)	rasl12 (ENSXETG00000040362)	mtfmt (ENSXETG00000006652)	XB5959486 [provisional] (ENSXETG00000006651)	cilp (ENSXETG00000006650) #10	gnrhr2/nmi (ENSXETG00000038283)	parp16 (ENSXETG00000006648) #11	igdcc3 (ENSXETG00000033022) #12	igdcc4 (ENSXETG00000006647)	dpp8 (ENSXETG00000006646) #14	hacd3 (ENSXETG00000030041) #15	ints14 (ENSXETG00000006644) #16	slc24a1 (ENSXETG00000033301) #17	dennd4a (ENSXETG00000006641) #21	rab11a (ENSXETG00000006639) #22	megf11 (ENSXETG00000015852) #24	dis3l (ENSXETG00000015865) #25	tipin (ENSXETG00000024752) #26	map2k1 (ENSXETG00000015887) #27	snapc5 (ENSXETG00000015893)	rpl4 (ENSXETG00000015898) #29	zwilch (ENSXETG00000015894) #30	lctl (ENSXETG00000015904) #31	smad6 (ENSXETG00000015939) #32	smad3 (ENSXETG00000007804) #33	aagab (ENSXETG00000007805) #34	pnlip (ENSXETG00000007807) #35	c15orf61 (ENSXETG00000030493)	map2k5 (ENSXETG00000007809)	ENSXETG00000044421
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000007446	ENSLLEG00000007538	ENSLLEG00000007550	CILP (ENSLLEG00000007563) #10	ENSLLEG00000007608	ENSLLEG00000007619	ENSLLEG00000007629	PARP16 (ENSLLEG00000007698) #11	IGDCC3 (ENSLLEG00000007896) #12	IGDCC4 (ENSLLEG00000005550) #13	DPP8 (ENSLLEG00000005938) #14	HACD3 (ENSLLEG00000006102) #15	INTS14 (ENSLLEG00000006176) #16	SLC24A1 (ENSLLEG00000006354) #17	DENND4A (ENSLLEG00000006505) #21	RAB11A (ENSLLEG00000007065) #22	MEGF11 (ENSLLEG00000007218) #24	ENSLLEG00000007739	DIS3L (ENSLLEG00000007758) #25	TIPIN (ENSLLEG00000007891) #26	ENSLLEG00000007941 #27	SNAPC5 (ENSLLEG00000008005) #28	ENSLLEG00000008024	ENSLLEG00000008052 #29	ZWILCH (ENSLLEG00000008260) #30	LCTL (ENSLLEG00000008419) #31	ENSLLEG00000009059	SMAD6 (ENSLLEG00000009090) #32	SMAD3 (ENSLLEG00000009194) #33	AAGAB (ENSLLEG00000009905) #34	IQCH (ENSLLEG00000009988) #35
Coelacanth	MODERN SPECIES	280	PDCD7 (ENSLACG00000017066) #8	KBTBD13 (ENSLACG00000016995)	RASL12 (ENSLACG00000016896)	MTFMT (ENSLACG00000016817)	si:ch73-314g15.3 (ENSLACG00000016787)	CILP (ENSLACG00000016729) #10	gnrhr1 (ENSLACG00000016584)	ENSLACG00000016540	PARP16 (ENSLACG00000016410) #11	IGDCC3 (ENSLACG00000015818) #12	IGDCC4 (ENSLACG00000014876) #13	DPP8 (ENSLACG00000014154) #14	HACD3 (ENSLACG00000013954) #15	INTS14 (ENSLACG00000013825) #16	DENND4A (ENSLACG00000012485) #21	RAB11A (ENSLACG00000012184) #22	MEGF11 (ENSLACG00000010981) #24	DIS3L (ENSLACG00000007995) #25	TIPIN (ENSLACG00000007807) #26	MAP2K1 (ENSLACG00000006464) #27	RPL4 (ENSLACG00000006259) #29	ZWILCH (ENSLACG00000005435) #30	LCTL (ENSLACG00000005143) #31	crybgx (ENSLACG00000004693)	SNAPC5 (ENSLACG00000004572) #28
Actinopterygii	ANCESTRAL SPECIES	92							ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000153499.b.b.d #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440	ENSGT01030000234539.a.a.b.a.b	ENSGT00940000157859
Neopterygii	ANCESTRAL SPECIES	85			ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000008152.B.b #10	ENSGT00950000183129.a #11	ENSGT00940000156969 #12	ENSGT00940000159637 #13	ENSGT00940000160717 #14	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b.f #17	ENSGT01030000234532.B.e.b.e #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244	ENSGT00940000155333.B #24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000153499.b.b.d #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505
Spotted gar	MODERN SPECIES	669	DUOXA2 (ENSLOCG00000013747)	GOLM2 (ENSLOCG00000013752)	ctdspl2a (ENSLOCG00000013760)	ENSLOCG00000013765	ENSLOCG00000013767	eif3ja (ENSLOCG00000013769)	cilp (ENSLOCG00000013772) #10	ENSLOCG00000013774	parp16 (ENSLOCG00000013778) #11	IGDCC3 (ENSLOCG00000013782) #12	IGDCC4 (ENSLOCG00000013791) #13	hacd3 (ENSLOCG00000013803) #15	ints14 (ENSLOCG00000013812) #16	SLC24A1 (ENSLOCG00000013820) #17	dennd4a (ENSLOCG00000013827) #21	rab11a (ENSLOCG00000013835) #22	ENSLOCG00000013837 #24	dis3l (ENSLOCG00000013846) #25	tipin (ENSLOCG00000013854) #26	map2k1 (ENSLOCG00000013858) #27	rpl4 (ENSLOCG00000013867) #29	zwilch (ENSLOCG00000013873) #30	lctla (ENSLOCG00000013878) #31	crybgx (ENSLOCG00000013888)	snapc5 (ENSLOCG00000013891) #28	smad6a (ENSLOCG00000013892) #32	smad3b (ENSLOCG00000013897) #33	aagab (ENSLOCG00000013907) #34	iqch (ENSLOCG00000013914) #35	zgc:162898 (ENSLOCG00000013920)	map2k5 (ENSLOCG00000013923)
Osteoglossocephalai	ANCESTRAL SPECIES	148							ENSGT00940000156926.d	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b.f #17	ENSGT01030000234532.B.e.b.e #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.A ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369 #31	ENSGT00940000153499.b.b.d #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440	ENSGT01030000234539.a.a.b.a.b	ENSGT01030000234534.B.a.b
Clupeocephala	ANCESTRAL SPECIES	69																ENSGT00940000154914 #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00390000010331 #28	ENSGT00940000158146.b #32	ENSGT00940000153499.b.b.d.a.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000158440.g.b	ENSGT00510000047881	ENSGT00990000203778	ENSGT00940000158775
Otomorpha	ANCESTRAL SPECIES		ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b.f #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00390000010331 #28	ENSGT00940000158146.b #32	ENSGT00940000153499.b.b.d.a.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000158440.g.b	ENSGT01030000234539.a.a.b.a.b.b	ENSGT00510000047881	ENSGT00990000203778
Otophysi	ANCESTRAL SPECIES	4	ENSGT00530000063553.b.b	ENSGT00940000168336	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT01050000244866.C	ENSGT00940000156011	ENSGT00390000015052 #36	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b.f #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00390000010331 #28	ENSGT00940000158146.b #32	ENSGT00940000153499.b.b.d.a.b.i #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000158440.g.b	ENSGT01030000234539.a.a.b.a.b.b	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00530000063553.b.b	ENSGT00940000168336	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT01050000244866.C	ENSGT00940000156011	ENSGT00390000015052 #36	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b.f #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00390000010331 #28	ENSGT00940000158146.b #32	ENSGT00940000153499.b.b.d.a.b.i #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000158440.g.b	ENSGT01030000234539.a.a.b.a.b.b	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a
Channel catfish	MODERN SPECIES	23	lonp2 (ENSIPUG00000020393)	il34 (ENSIPUG00000020427)	sf3b3 (ENSIPUG00000020435)	st3gal2 (ENSIPUG00000020529)	aars (ENSIPUG00000020538)	ENSIPUG00000020630	pllp (ENSIPUG00000020662)	arl2bp (ENSIPUG00000020669) #36	arih1 (ENSIPUG00000020676)	c4h15orf39 (ENSIPUG00000021229)	ppcdc (ENSIPUG00000021242)	hacd3 (ENSIPUG00000021269) #15	vwa9 (ENSIPUG00000021289) #16	slc24a1 (ENSIPUG00000021316) #17	dennd4a (ENSIPUG00000021338) #21	Rab11a (ENSIPUG00000021401) #22	megf11 (ENSIPUG00000021414) ##24	map2k1 (ENSIPUG00000021471) #27	rpl4-b (ENSIPUG00000021502) #29	zwilch (ENSIPUG00000021572) #30	LCTL (ENSIPUG00000021616) #31	snapc5 (ENSIPUG00000021633) #28	SMAD6 (ENSIPUG00000021637) #32	smad3b (ENSIPUG00000021649) #33	AAGAB (ENSIPUG00000021694) #34	iqch (ENSIPUG00000021716) #35	c4h15orf61 (ENSIPUG00000021762)	skor1b (ENSIPUG00000022829)	PIAS1 (ENSIPUG00000022852)	morf4l1 (ENSIPUG00000022885)	ENSIPUG00000022933
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00530000063553.b.b	ENSGT00940000168336	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT01050000244866.C	ENSGT00940000156011	ENSGT00390000015052 #36	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b.f #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00390000010331 #28	ENSGT00940000158146.b #32	ENSGT00940000153499.b.b.d.a.b.i #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000158440.g.b	ENSGT01030000234539.a.a.b.a.b.b	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a
Characoidei	ANCESTRAL SPECIES	30	ENSGT00530000063553.b.b	ENSGT00940000168336	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT01050000244866.C	ENSGT00940000156011	ENSGT00390000015052 #36	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b.f #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00390000010331 #28	ENSGT00940000158146.b #32	ENSGT00940000153499.b.b.d.a.b.i #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000158440.g.b	ENSGT01030000234539.a.a.b.a.b.b	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a
Red-bellied piranha	MODERN SPECIES		lonp2 (ENSPNAG00000015490)	il34 (ENSPNAG00000015434)	sf3b3 (ENSPNAG00000015419)	st3gal2 (ENSPNAG00000015314)	aars1 (ENSPNAG00000015269)	ENSPNAG00000015237	pllp (ENSPNAG00000015182)	arl2bp (ENSPNAG00000015169) #36	arih1 (ENSPNAG00000015135)	ENSPNAG00000015080	ppcdc (ENSPNAG00000015060)	hacd3 (ENSPNAG00000015056) #15	ints14 (ENSPNAG00000015024) #16	SLC24A1 (ENSPNAG00000003338) #17	dennd4a (ENSPNAG00000014917) #21	rab11a (ENSPNAG00000014863) #22	ENSPNAG00000014837 ##24	map2k1 (ENSPNAG00000014728) #27	rpl4 (ENSPNAG00000014698) #29	zwilch (ENSPNAG00000014620) #30	LCTL (ENSPNAG00000003168) #31	snapc5 (ENSPNAG00000014521) #28	smad6b (ENSPNAG00000014508) #32	smad3b (ENSPNAG00000003144) #33	aagab (ENSPNAG00000014473) #34	iqch (ENSPNAG00000014434) #35	zgc:162898 (ENSPNAG00000003117)	skor1b (ENSPNAG00000014398)	PIAS1 (ENSPNAG00000014367)	ENSPNAG00000014295	morf4l1 (ENSPNAG00000014280)
Mexicana tetra	MODERN SPECIES	9	lonp2 (ENSAMXG00000003436)	il34 (ENSAMXG00000029682)	sf3b3 (ENSAMXG00000003410)	st3gal2 (ENSAMXG00000003386)	aars1 (ENSAMXG00000003368)	ENSAMXG00000003354	pllp (ENSAMXG00000037550)	arl2bp (ENSAMXG00000039327) #36	arih1 (ENSAMXG00000003281)	ENSAMXG00000003257	ppcdc (ENSAMXG00000038023)	hacd3 (ENSAMXG00000036622) #15	ints14 (ENSAMXG00000003207) #16	SLC24A1 (ENSAMXG00000003180) #17	dennd4a (ENSAMXG00000003173) #21	rab11a (ENSAMXG00000003155) #22	ENSAMXG00000003031 ##24	map2k1 (ENSAMXG00000003000) #27	rpl4 (ENSAMXG00000029678) #29	zwilch (ENSAMXG00000042209) #30	LCTL (ENSAMXG00000002915) #31	snapc5 (ENSAMXG00000035746) #28	ENSAMXG00000042016	smad6b (ENSAMXG00000002889) #32	smad3b (ENSAMXG00000002880) #33	aagab (ENSAMXG00000034247) #34	iqch (ENSAMXG00000002847) #35	zgc:162898 (ENSAMXG00000002824)	ENSAMXG00000039689	skor1b (ENSAMXG00000002804)	PIAS1 (ENSAMXG00000002784)
Electric eel	MODERN SPECIES	655											ppcdc (ENSEEEG00000022669)	hacd3 (ENSEEEG00000022666) #15	ints14 (ENSEEEG00000022663) #16	SLC24A1 (ENSEEEG00000022661) #17	dennd4a (ENSEEEG00000022659) #21	rab11a (ENSEEEG00000022658) #22	ENSEEEG00000022657	ENSEEEG00000022655 ##24	map2k1 (ENSEEEG00000022402) #27	slc28a1 (ENSEEEG00000022360)	ENSEEEG00000022359	ENSEEEG00000022358
Cyprinoidei	ANCESTRAL SPECIES	10	ENSGT00530000063553.b.b	ENSGT00940000168336	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT01050000244866.C	ENSGT00940000156011	ENSGT00390000015052 #36	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b.f #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00390000010331 #28	ENSGT00940000158146.b #32	ENSGT00940000153499.b.b.d.a.b.i #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000158440.g.b	ENSGT01030000234539.a.a.b.a.b.b	ENSGT01030000234518.B.a.b.a.b.j	ENSGT00950000182965.a.b.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	123	ENSGT00530000063553.b.b.d	ENSGT00940000168336.c	ENSGT00950000183151.a.a.b.b.i	ENSGT00940000156356.d	ENSGT00940000157335.l	ENSGT01050000244866.C.b	ENSGT00940000156011.`b	ENSGT00390000015052.b #36	ENSGT00940000155744.g.a	ENSGT00940000169185.a	ENSGT00440000038107.o	ENSGT00530000062962.b.a.f.a #15	ENSGT00390000009486.e #16	ENSGT01030000234532.B.e.b.f.b #17	ENSGT00940000155836.B.c #21	ENSGT00940000154914.tb #22	ENSGT00940000155333.A.b.b ##24	ENSGT00940000153487.b.b.s #27	ENSGT00390000018145.f #29	ENSGT00940000157369.a.c #31	ENSGT00390000010331.n #28	ENSGT00940000158146.b.f #32	ENSGT00940000153499.b.b.d.a.b.i.b #33	ENSGT00390000007218.q #34	ENSGT00390000008908.a #35
Cyprininae_a	ANCESTRAL SPECIES	131	ENSGT00530000063553.b.b.d	ENSGT00940000168336.c	ENSGT00950000183151.a.a.b.b.i	ENSGT00940000156356.d	ENSGT00940000157335.l	ENSGT01050000244866.C.b	ENSGT00940000156011.`b	ENSGT00390000015052.b #36	ENSGT00940000155744.g.a	ENSGT00940000169185.a	ENSGT00440000038107.o	ENSGT00530000062962.b.a.f.a #15	ENSGT00390000009486.e #16	ENSGT01030000234532.B.e.b.f.b #17	ENSGT00940000155836.B.c #21	ENSGT00940000154914.tb #22	ENSGT00940000155333.A.b.b ##24	ENSGT00940000153487.b.b.s #27	ENSGT00390000018145.f #29	ENSGT00390000013696.f #30	ENSGT00940000157369.a.c #31	ENSGT00390000010331.n #28	ENSGT00940000158146.b.f #32	ENSGT00940000153499.b.b.d.a.b.i.b #33	ENSGT00390000007218.q #34	ENSGT00390000008908.a #35
Golden-line barbel	MODERN SPECIES	54	lonp2 (ENSSGRG00000030801)	il34 (ENSSGRG00000030800)	SF3B3 (ENSSGRG00000030799)	ENSSGRG00000030794	ENSSGRG00000030795	st3gal2 (ENSSGRG00000030792)	aars1 (ENSSGRG00000029996)	ENSSGRG00000029983	arih1 (ENSSGRG00000029910)	ENSSGRG00000029906	ppcdc (ENSSGRG00000029905)	hacd3 (ENSSGRG00000029894) #15	ints14 (ENSSGRG00000029760) #16	SLC24A1 (ENSSGRG00000029751) #17	dennd4a (ENSSGRG00000028490) #21	rab11a (ENSSGRG00000028469) #22	ENSSGRG00000028343 ##24	map2k1 (ENSSGRG00000026412) #27	rpl4 (ENSSGRG00000026237) #29	zwilch (ENSSGRG00000026228) #30	LCTL (ENSSGRG00000026226) #31	snapc5 (ENSSGRG00000026223) #28	smad6b (ENSSGRG00000026221) #32	smad3b (ENSSGRG00000025385) #33	aagab (ENSSGRG00000025352) #34	iqch (ENSSGRG00000025341) #35	zgc:162898 (ENSSGRG00000025335)	skor1b (ENSSGRG00000025333)	ENSSGRG00000025332	PIAS1 (ENSSGRG00000025330)	morf4l1 (ENSSGRG00000025132)
Common carp reference	MODERN SPECIES	9	lonp2 (ENSCCRG00000034928)	il34 (ENSCCRG00000060641)	sf3b3 (ENSCCRG00000024068)	st3gal2 (ENSCCRG00000076295)	aars1 (ENSCCRG00000005376)	ENSCCRG00000006513	pllp (ENSCCRG00000005176)	arl2bp (ENSCCRG00000005183) #36	arih1 (ENSCCRG00000025952)	ENSCCRG00000081007	ppcdc (ENSCCRG00000018299)	hacd3 (ENSCCRG00000017852) #15	ints14 (ENSCCRG00000047151) #16	SLC24A1 (ENSCCRG00000066083) #17	dennd4a (ENSCCRG00000020231) #21	rab11a (ENSCCRG00000059058) #22	ENSCCRG00000009371 ##24	map2k1 (ENSCCRG00000035016) #27	rpl4 (ENSCCRG00000034465) #29	LCTL (ENSCCRG00000034940) #31	snapc5 (ENSCCRG00000076911) #28	smad6b (ENSCCRG00000028531) #32	smad3b (ENSCCRG00000014185) #33	aagab (ENSCCRG00000014234) #34	iqch (ENSCCRG00000014287) #35	ENSCCRG00000064665	skor1b (ENSCCRG00000043233)	PIAS1 (ENSCCRG00000043261)	ENSCCRG00000031056	morf4l1 (ENSCCRG00000031057)	ENSCCRG00000064433
Goldfish	MODERN SPECIES	37	lonp2 (ENSCARG00000065548)	il34 (ENSCARG00000065462)	sf3b3 (ENSCARG00000065369)	st3gal2 (ENSCARG00000065325)	aars1 (ENSCARG00000065093)	ENSCARG00000064321	pllp (ENSCARG00000064293)	arl2bp (ENSCARG00000064261) #36	arih1 (ENSCARG00000063977)	ENSCARG00000063954	ppcdc (ENSCARG00000063932)	hacd3 (ENSCARG00000063827) #15	ints14 (ENSCARG00000063746) #16	SLC24A1 (ENSCARG00000063727) #17	dennd4a (ENSCARG00000062471) #21	rab11a (ENSCARG00000062368) #22	ENSCARG00000058612 ##24	map2k1 (ENSCARG00000057706) #27	rpl4 (ENSCARG00000057625) #29	LCTL (ENSCARG00000057492) #31	snapc5 (ENSCARG00000057463) #28	smad6b (ENSCARG00000057432) #32	smad3b (ENSCARG00000057166) #33	aagab (ENSCARG00000057137) #34	ENSCARG00000057132	skor1b (ENSCARG00000057106)	ENSCARG00000057077	ENSCARG00000057062	ric8b (ENSCARG00000057023)	rfx4 (ENSCARG00000056887)	mlycd (ENSCARG00000056868)
Cyprininae	ANCESTRAL SPECIES	74	ENSGT00530000063553.b.b.c	ENSGT00940000168336.d	ENSGT00950000183151.a.a.b.b.j	ENSGT00940000156356.c	ENSGT00940000157335.k	ENSGT01050000244866.C.a	ENSGT00940000156011.ab	ENSGT00390000015052.a #36	ENSGT00940000155744.g.b	ENSGT00940000169185.b	ENSGT00440000038107.p	ENSGT00530000062962.b.a.f.b #15	ENSGT00390000009486.f #16	ENSGT01030000234532.B.e.b.f.a #17	ENSGT00940000155836.B.d #21	ENSGT00940000154914.ub #22	ENSGT00940000155333.A.b.a ##24	ENSGT00940000153487.b.b.t #27	ENSGT00390000018145.e #29	ENSGT00390000013696 #30	ENSGT00940000157369.a.d #31	ENSGT00390000010331.m #28	ENSGT00940000158146.b.e #32	ENSGT00940000153499.b.b.d.a.b.i.a #33	ENSGT00390000007218.r #34	ENSGT00390000008908.b #35	ENSGT00390000015942	ENSGT00940000158440.g.b.b	ENSGT01030000234539.a.a.b.a.b.b.a	ENSGT00950000182965.a.b.a.a.c	ENSGT01030000235447
Goldfish	MODERN SPECIES	9	lonp2 (ENSCARG00000011141)	il34 (ENSCARG00000011515)	sf3b3 (ENSCARG00000011537)	st3gal2 (ENSCARG00000011584)	aars1 (ENSCARG00000011630)	ENSCARG00000011736	pllp (ENSCARG00000011891)	arl2bp (ENSCARG00000011894) #36	arih1 (ENSCARG00000011916)	ENSCARG00000011988	ppcdc (ENSCARG00000011991)	hacd3 (ENSCARG00000012002) #15	ints14 (ENSCARG00000012147) #16	SLC24A1 (ENSCARG00000012194) #17	dennd4a (ENSCARG00000012263) #21	rab11a (ENSCARG00000013410) #22	ENSCARG00000013448 ##24	map2k1 (ENSCARG00000013618) #27	rpl4 (ENSCARG00000013743) #29	zwilch (ENSCARG00000013771) #30	LCTL (ENSCARG00000013798) #31	snapc5 (ENSCARG00000013818) #28	smad6b (ENSCARG00000013826) #32	smad3b (ENSCARG00000013852) #33	aagab (ENSCARG00000013875) #34	iqch (ENSCARG00000013907) #35	zgc:162898 (ENSCARG00000013951)	skor1b (ENSCARG00000013956)	PIAS1 (ENSCARG00000013991)	ENSCARG00000014119	morf4l1 (ENSCARG00000014135)
Cyprininae_a	ANCESTRAL SPECIES	15	ENSGT00530000063553.b.b.c	ENSGT00940000168336.d	ENSGT00950000183151.a.a.b.b.j	ENSGT00940000156356.c	ENSGT00940000157335.k	ENSGT01050000244866.C.a	ENSGT00940000156011.ab	ENSGT00390000015052.a #36	ENSGT00940000155744.g.b	ENSGT00940000169185.b	ENSGT00440000038107.p	ENSGT00530000062962.b.a.f.b #15	ENSGT00390000009486.f #16	ENSGT01030000234532.B.e.b.f.a #17	ENSGT00940000155836.B.d #21	ENSGT00940000154914.ub #22	ENSGT00940000155333.A.b.a ##24	ENSGT00940000153487.b.b.t #27	ENSGT00390000018145.e #29	ENSGT00390000013696.e #30	ENSGT00940000157369.a.d #31	ENSGT00390000010331.m #28	ENSGT00940000158146.b.e #32	ENSGT00940000153499.b.b.d.a.b.i.a #33	ENSGT00390000007218.r #34	ENSGT00390000008908.b #35	ENSGT00390000015942	ENSGT00940000158440.g.b.b	ENSGT01030000234539.a.a.b.a.b.b.a	ENSGT00950000182965.a.b.a.a.c	ENSGT01030000235447.a
Common carp reference	MODERN SPECIES	19	lonp2 (ENSCCRG00000070534)	il34 (ENSCCRG00000025227)	sf3b3 (ENSCCRG00000026756)	st3gal2 (ENSCCRG00000077284)	aars1 (ENSCCRG00000004748)	ENSCCRG00000005086	arl2bp (ENSCCRG00000058906) #36	arih1 (ENSCCRG00000005206)	ENSCCRG00000071734	ppcdc (ENSCCRG00000072999)	hacd3 (ENSCCRG00000047136) #15	ints14 (ENSCCRG00000017792) #16	SLC24A1 (ENSCCRG00000009282) #17	ENSCCRG00000072431	dennd4a (ENSCCRG00000009528) #21	rab11a (ENSCCRG00000009402) #22	ENSCCRG00000073950 ##24	map2k1 (ENSCCRG00000077344) #27	zwilch (ENSCCRG00000034439) #30	LCTL (ENSCCRG00000017070) #31	snapc5 (ENSCCRG00000078719) #28	smad6b (ENSCCRG00000017061) #32	smad3b (ENSCCRG00000067387) #33	aagab (ENSCCRG00000016912) #34	iqch (ENSCCRG00000077345) #35	skor1b (ENSCCRG00000014176)	PIAS1 (ENSCCRG00000030976)	morf4l1 (ENSCCRG00000043359)	ENSCCRG00000076672	tle3a (ENSCCRG00000030091)	kif23 (ENSCCRG00000015859)
Golden-line barbel	MODERN SPECIES	224											ppcdc (ENSSGRG00000053835)	hacd3 (ENSSGRG00000053825) #15	ints14 (ENSSGRG00000053784) #16	SLC24A1 (ENSSGRG00000053777) #17	dennd4a (ENSSGRG00000053530) #21	rab11a (ENSSGRG00000053474) #22	ENSSGRG00000053461 ##24	map2k1 (ENSSGRG00000053371) #27	rpl4 (ENSSGRG00000053329) #29	zwilch (ENSSGRG00000053327) #30	LCTL (ENSSGRG00000053324) #31	snapc5 (ENSSGRG00000053323) #28	smad6b (ENSSGRG00000053322) #32	ENSSGRG00000053321 #33	aagab (ENSSGRG00000053318) #34	iqch (ENSSGRG00000053315) #35	zgc:162898 (ENSSGRG00000053314)	ENSSGRG00000053214	ENSSGRG00000053206	morf4l1 (ENSSGRG00000053205)	ENSSGRG00000053204
Zebrafish	MODERN SPECIES	9	sf3b3 (ENSDARG00000103553)	st3gal2 (ENSDARG00000112898)	aars1 (ENSDARG00000069142)	ENSDARG00000093381	pllp (ENSDARG00000062756)	arl2bp (ENSDARG00000025383) #36	arih1 (ENSDARG00000003616)	ENSDARG00000069168	ppcdc (ENSDARG00000033020)	hacd3 (ENSDARG00000016038) #15	ints14 (ENSDARG00000041429) #16	SLC24A1 (ENSDARG00000041431) #17	dennd4a (ENSDARG00000062721) #21	ENSDARG00000092535	ENSDARG00000069189	rab11a (ENSDARG00000041450) #22	ENSDARG00000062686 ##24	map2k1 (ENSDARG00000007825) #27	rpl4 (ENSDARG00000041182) #29	zwilch (ENSDARG00000057100) #30	LCTL (ENSDARG00000016337) #31	snapc5 (ENSDARG00000062476) #28	smad6b (ENSDARG00000031763) #32	smad3b (ENSDARG00000010207) #33	aagab (ENSDARG00000041170) #34	iqch (ENSDARG00000015476) #35	C18H15orf61 (ENSDARG00000111588)	skor1b (ENSDARG00000062448)	PIAS1 (ENSDARG00000062445)	ENSDARG00000069246	morf4l1 (ENSDARG00000041155)
Clupeiformes	ANCESTRAL SPECIES	4	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366.cb	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b.f #17	ENSGT00940000155836.B.e #21	ENSGT00940000154914 #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00390000010331 #28
Atlantic herring	MODERN SPECIES	19	islr2 (ENSCHAG00000005198)	stra6 (ENSCHAG00000004961)	ENSCHAG00000004932	ENSCHAG00000004915	cyp11a1.1 (ENSCHAG00000004846)	stoml1 (ENSCHAG00000004806)	nr2e3 (ENSCHAG00000004783)	hexa (ENSCHAG00000004565)	arih1 (ENSCHAG00000004536)	ENSCHAG00000004518	ppcdc (ENSCHAG00000004502)	hacd3 (ENSCHAG00000004038) #15	ints14 (ENSCHAG00000003814) #16	SLC24A1 (ENSCHAG00000003677) #17	dennd4a (ENSCHAG00000003270) #21	rab11a (ENSCHAG00000002433) #22	ENSCHAG00000000584 ##24	map2k1 (ENSCHAG00000000220) #27	snapc5 (ENSCHAG00000000160) #28	LCTL (ENSCHAG00000000142) #31	zwilch (ENSCHAG00000000117) #30	rpl4 (ENSCHAG00000023757) #29	map2k1 (ENSCHAG00000023747) #27	smad6b (ENSCHAG00000023735) #32	ENSCHAG00000023728	smad6b (ENSCHAG00000023725) #32	ENSCHAG00000023724	SMAD3 (ENSCHAG00000023688) #33	aagab (ENSCHAG00000023674) #34	iqch (ENSCHAG00000023667) #35	zgc:162898 (ENSCHAG00000023666)
Denticle herring	MODERN SPECIES	8	sema7a (ENSDCDG00000022767)	islr2 (ENSDCDG00000022765)	stra6 (ENSDCDG00000022373)	ENSDCDG00000022353	cyp11a1.1 (ENSDCDG00000022348)	stoml1 (ENSDCDG00000022343)	nr2e3 (ENSDCDG00000022341)	hexa (ENSDCDG00000022236)	arih1 (ENSDCDG00000022181)	ENSDCDG00000022175	ppcdc (ENSDCDG00000022174)	hacd3 (ENSDCDG00000022160) #15	ints14 (ENSDCDG00000022144) #16	SLC24A1 (ENSDCDG00000022137) #17	dennd4a (ENSDCDG00000022118) #21	rab11a (ENSDCDG00000034506) #22	ENSDCDG00000034401 ##24	TDG (ENSDCDG00000034392)	tdg.1 (ENSDCDG00000034387)	ENSDCDG00000034376	ENSDCDG00000034368	samm50 (ENSDCDG00000034358)	ENSDCDG00000034357	RAB19 (ENSDCDG00000034353)	ccdc34 (ENSDCDG00000034351)	ENSDCDG00000034350	PRKAR2B (ENSDCDG00000034323)	hbp1 (ENSDCDG00000034321)	GPR22 (ENSDCDG00000034318)	ahcyl2a (ENSDCDG00000034151)	LRTM2 (ENSDCDG00000034142)
Euteleosteomorpha	ANCESTRAL SPECIES	261					ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000158477.a.a	ENSGT00950000182959.b.a.a	ENSGT00940000157490	ENSGT00390000002049.c.b	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00530000062962.b.a.e #15	ENSGT01030000234532.B.e.b.e #17	ENSGT00940000155836.B #21	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	101	ENSGT00940000159464	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000153901.a.b.a	ENSGT01000000216979	ENSGT00940000158477.a.a	ENSGT00950000182959.b.a.a	ENSGT00940000157490	ENSGT00390000002049.c.b	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000155744.t.a	ENSGT00530000062962.b.a.e #15	ENSGT01030000234532.B.e.b.e #17	ENSGT00940000155836.B #21	ENSGT00940000154914.vb #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000168079	ENSGT00390000011190	ENSGT00940000157324	ENSGT00510000046704.b.b	ENSGT00940000158441	ENSGT00510000047412.b	ENSGT00940000156422	ENSGT00390000011613	ENSGT00940000164068.a.b.a.a.a	ENSGT00940000164068.a.b.b
Salmoninae	ANCESTRAL SPECIES	1	ENSGT01030000234588.b.b.b.b.a.b.a.e.b.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000153901.a.b.a	ENSGT01000000216979	ENSGT00940000158477.a.a	ENSGT00950000182959.b.a.a	ENSGT00940000157490	ENSGT00390000002049.c.b	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000155744.t.a	ENSGT00530000062962.b.a.e #15	ENSGT01030000234532.B.e.b.e #17	ENSGT00940000155836.B.j #21	ENSGT00940000154914.vb #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000168079	ENSGT00390000011190	ENSGT00940000157324	ENSGT00510000046704.b.b	ENSGT00940000158441	ENSGT00510000047412.b	ENSGT00940000156422.i	ENSGT00940000156422.j	ENSGT00390000011613	ENSGT00940000164068.a.b.a.a.a
Salmoninae_a	ANCESTRAL SPECIES	85	ENSGT01030000234588.b.b.b.b.a.b.b.b	ENSGT01030000234588.b.b.b.b.a.b.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.b.a.a.b	ENSGT00940000153901.a.b.a	ENSGT00940000158477.a.a	ENSGT00950000182959.b.a.a	ENSGT00940000157490	ENSGT00390000002049.c.b	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000155744.t.a	ENSGT00530000062962.b.a.e #15	ENSGT01030000234532.B.e.b.e #17	ENSGT00940000155836.B.j #21	ENSGT00940000154914.vb #22	ENSGT00940000155333.A.a.i.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000011190	ENSGT00940000157324.l	ENSGT00510000046704.b.b.a	ENSGT00940000158441	ENSGT00510000047412.b	ENSGT00940000156422.i	ENSGT00940000156422.j	ENSGT00390000011613	ENSGT00940000164068.a.b.a.a.a	ENSGT00940000164068.a.b.b
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	112	ENSGT01030000234588.b.b.b.b.a.b.b.a.a.b	ENSGT00940000153901.a.b.a	ENSGT00940000158477.a.a.d	ENSGT01000000216979.a	ENSGT00940000158477.a.a.c	ENSGT00950000182959.b.a.a	ENSGT00940000157490	ENSGT00390000002049.c.b.l	ENSGT00940000160967.f.b	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d.b	ENSGT00940000155744.t.a	ENSGT00530000062962.b.a.e.a #15	ENSGT01030000234532.B.e.b.e #17	ENSGT00940000155836.B.j.b #21	ENSGT00940000154914.vb.a #22	ENSGT00940000155333.A.a.j ##24	ENSGT00940000155836.B.j.a #21	ENSGT00940000154914.vb.b #22	ENSGT00940000155333.A.a.i.a ##24	ENSGT00530000063106.B.j #25	ENSGT00390000005764.s #26	ENSGT00390000005764.t #26	ENSGT00940000157369.b #31	ENSGT00940000165890.b	ENSGT00940000168079	ENSGT00940000157324.k	ENSGT00510000046704.b.b.a.c	ENSGT00940000158441.e	ENSGT00510000047412.b.e	ENSGT00940000156422.i
River trout	DUPLICATION
River trout	MODERN SPECIES	3	ENSSTUG00000001875	TNNI2 (ENSSTUG00000001889)	tnni2b.1 (ENSSTUG00000001896)	ENSSTUG00000001903	ENSSTUG00000001917	myod1 (ENSSTUG00000001933)	OTOG (ENSSTUG00000001950)	aph1b (ENSSTUG00000002066)	ENSSTUG00000002075	ENSSTUG00000002080	NR2E3 (ENSSTUG00000002100)	arih1l (ENSSTUG00000002114)	HACD3 (ENSSTUG00000002183) #15	SLC24A1 (ENSSTUG00000002229) #17	dennd4a (ENSSTUG00000002300) #21	rab11a (ENSSTUG00000004309) #22	ENSSTUG00000004325	leo1 (ENSSTUG00000004341)	tmod2 (ENSSTUG00000004523)	ppfia1 (ENSSTUG00000004645)	ENSSTUG00000007012	ENSSTUG00000007041	arfgap2 (ENSSTUG00000007061)	pex16 (ENSSTUG00000007120)	slc22a18 (ENSSTUG00000007145)	cars1 (ENSSTUG00000007209)	cpt1aa (ENSSTUG00000008905)	lingo1b (ENSSTUG00000009375)	kcnq1.1 (ENSSTUG00000009396)	ENSSTUG00000009667	ENSSTUG00000009677
River trout	MODERN SPECIES	21	ENSSTUG00000004274	TNNI2 (ENSSTUG00000004289)	tnni2b.1 (ENSSTUG00000004312)	ENSSTUG00000004360	ENSSTUG00000004371	TNNT3 (ENSSTUG00000004390)	myod1 (ENSSTUG00000004466)	aph1b (ENSSTUG00000004478)	ENSSTUG00000004484	ENSSTUG00000004489	NR2E3 (ENSSTUG00000004529)	ARIH1 (ENSSTUG00000004569)	HACD3 (ENSSTUG00000004705) #15	SLC24A1 (ENSSTUG00000004931) #17	dennd4a (ENSSTUG00000004971) #21	rab11a (ENSSTUG00000005754) #22	ENSSTUG00000005780 ##24	dis3l (ENSSTUG00000005812) #25	tipin (ENSSTUG00000005839) #26	lctla (ENSSTUG00000005848) #31	crybgx (ENSSTUG00000005860)	ENSSTUG00000005865	HOMER2 (ENSSTUG00000005871)	WHAMM (ENSSTUG00000005932)	FSD2 (ENSSTUG00000005940)	ENSSTUG00000005958	pde8a (ENSSTUG00000006015)	ENSSTUG00000007632	gatm (ENSSTUG00000007634)	ENSSTUG00000007666	slc27a2a (ENSSTUG00000007988)
Atlantic salmon	MODERN SPECIES	2	TNNI2 (ENSSSAG00000009799)	ENSSSAG00000108614	ENSSSAG00000084840	myod1 (ENSSSAG00000040107)	TNNT3 (ENSSSAG00000010002)	ENSSSAG00000096205	ENSSSAG00000113698	ENSSSAG00000104282	ENSSSAG00000094543	ENSSSAG00000101082	ENSSSAG00000072984	ENSSSAG00000099816	HACD3 (ENSSSAG00000009594) #15	SLC24A1 (ENSSSAG00000009849) #17	DENND4A (ENSSSAG00000100635) #21	RAB11A (ENSSSAG00000099276) #22	ENSSSAG00000103573 ##24	tipin (ENSSSAG00000082602) #26	ENSSSAG00000008839 #31	crybgx (ENSSSAG00000008876)	HOMER2 (ENSSSAG00000103439)	ENSSSAG00000121906	ENSSSAG00000092676	FSD2 (ENSSSAG00000073255)	ENSSSAG00000009779	pde8a (ENSSSAG00000097988)	gatm (ENSSSAG00000069650)	ENSSSAG00000108011	slc27a2a (ENSSSAG00000012340)	hdc (ENSSSAG00000098647)	ENSSSAG00000093071
Salmo	ANCESTRAL SPECIES	112	ENSGT01000000216979.a	ENSGT00940000158477.a.a.c	ENSGT00950000182959.b.a.a	ENSGT00940000157490	ENSGT00390000002049.c.b.l	ENSGT00940000160967.f.b	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d.b	ENSGT00940000155744.t.a	ENSGT00530000062962.b.a.e.a #15	ENSGT01030000234532.B.e.b.e #17	ENSGT00940000155836.B.j.b #21	ENSGT00940000154914.vb.a #22	ENSGT00940000155333.A.a.j ##24	ENSGT00940000155836.B.j.a #21	ENSGT00940000154914.vb.b #22	ENSGT00940000155333.A.a.i.a ##24	ENSGT00530000063106.B.j #25	ENSGT00390000005764.s #26	ENSGT00390000005764.t #26	ENSGT00940000157369.b #31	ENSGT00940000165890.b	ENSGT00940000168079	ENSGT00940000157324.k	ENSGT00510000046704.b.b.a.c	ENSGT00940000158441.e	ENSGT00510000047412.b.e	ENSGT00940000156422.i
Atlantic salmon	MODERN SPECIES	18	ENSSSAG00000095150	ENSSSAG00000103815	ENSSSAG00000108582	TNNT3 (ENSSSAG00000009998)	ENSSSAG00000010004	ENSSSAG00000056579	ENSSSAG00000104869	ENSSSAG00000010246	ENSSSAG00000119131	ENSSSAG00000009811	ENSSSAG00000009961	ENSSSAG00000095519	HACD3 (ENSSSAG00000095799) #15	SLC24A1 (ENSSSAG00000010183) #17	DENND4A (ENSSSAG00000082487) #21	RAB11A (ENSSSAG00000062971) #22	ENSSSAG00000092940 ##24	dis3l (ENSSSAG00000121052) #25	tipin (ENSSSAG00000043439) #26	lctla (ENSSSAG00000043842) #31	crybgx (ENSSSAG00000069661)	RAMAC (ENSSSAG00000069672)	homer2 (ENSSSAG00000098183)	WHAMM (ENSSSAG00000110696)	ENSSSAG00000095380	ENSSSAG00000073264	pde8a (ENSSSAG00000094947)	gatm (ENSSSAG00000055493)	s27a2 (ENSSSAG00000115180)	slc27a2a (ENSSSAG00000122085)	hdc (ENSSSAG00000042330)
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c.b	ENSGT00940000160309.e.b.d	ENSGT00940000158707.a.a	ENSGT00390000001802	ENSGT00940000159464	ENSGT00940000157490	ENSGT00390000002049.c.b	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000155744.t.a	ENSGT00530000062962.b.a.e #15	ENSGT01030000234532.B.e.b.e #17	ENSGT00940000155836.B.j #21	ENSGT00940000154914.vb #22	ENSGT00940000155333.A.a.i.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000011190	ENSGT00940000157324.l	ENSGT00510000046704.b.b.a	ENSGT00940000158441	ENSGT00940000156422.i	ENSGT00390000011613	ENSGT00940000164068.a.b.a.a.a	ENSGT00940000157938.j.b	ENSGT00940000163460.a.a.c.a.b	ENSGT00940000157542
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000029082	ENSOMYG00000055514	TNNT3 (ENSOMYG00000049303)	myod1 (ENSOMYG00000029242)	ENSOMYG00000069614	ENSOMYG00000063706	ENSOMYG00000060149	ENSOMYG00000005082	ENSOMYG00000005006	ENSOMYG00000050119	ENSOMYG00000004974	ENSOMYG00000023825	HACD3 (ENSOMYG00000059785) #15	SLC24A1 (ENSOMYG00000004858) #17	DENND4A (ENSOMYG00000076284) #21	RAB11A (ENSOMYG00000049890) #22	ENSOMYG00000062709 ##24	dis3l (ENSOMYG00000052777) #25	tipin (ENSOMYG00000074288) #26	lctla (ENSOMYG00000056022) #31	crybgx (ENSOMYG00000048390)	ENSOMYG00000050671	homer2 (ENSOMYG00000063764)	WHAMM (ENSOMYG00000057419)	FSD2 (ENSOMYG00000048469)	ENSOMYG00000058373	ENSOMYG00000077619	ENSOMYG00000064324	ENSOMYG00000058176	ENSOMYG00000076233	pde8a (ENSOMYG00000074691)
Rainbow trout	MODERN SPECIES	18	ENSOMYG00000029106	ENSOMYG00000060665	ENSOMYG00000051029	ENSOMYG00000014317	myod (ENSOMYG00000061213)	ENSOMYG00000052295	ENSOMYG00000040832	ENSOMYG00000076821	ENSOMYG00000061598	ENSOMYG00000062139	ENSOMYG00000054709	ENSOMYG00000074482	HACD3 (ENSOMYG00000040606) #15	SLC24A1 (ENSOMYG00000004910) #17	DENND4A (ENSOMYG00000065265) #21	RAB11A (ENSOMYG00000026657) #22	ENSOMYG00000074521 ##24	ENSOMYG00000021812	dis3l (ENSOMYG00000048031) #25	tipin (ENSOMYG00000050576) #26	lctla (ENSOMYG00000004788) #31	crybgx (ENSOMYG00000049421)	ENSOMYG00000053924	homer2 (ENSOMYG00000000066)	WHAMM (ENSOMYG00000067414)	FSD2 (ENSOMYG00000050212)	ENSOMYG00000049883	ENSOMYG00000075465	ENSOMYG00000053548	pde8a (ENSOMYG00000058534)	gatm (ENSOMYG00000040856)
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000154914.vb #22
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	252															ENSOKIG00005034445	ENSOKIG00005034454 #22
Coho salmon	MODERN SPECIES	32	TNNT3 (ENSOKIG00005017863)	MYOD1 (ENSOKIG00005017854)	ENSOKIG00005017845	OTOG (ENSOKIG00005017697)	aph1b (ENSOKIG00005017675)	ENSOKIG00005017668	ENSOKIG00005017602	NR2E3 (ENSOKIG00005043003)	arih1l (ENSOKIG00005042766)	HACD3 (ENSOKIG00005042645) #15	SLC24A1 (ENSOKIG00005042621) #17	ENSOKIG00005042607	DENND4A (ENSOKIG00005041726) #21	ENSOKIG00005041656	ENSOKIG00005041640	rab11a (ENSOKIG00005041589) #22	dis3l (ENSOKIG00005040437) #25	ENSOKIG00005040323 #26	lctla (ENSOKIG00005040258) #31	crybgx (ENSOKIG00005040244)	ENSOKIG00005040199	HOMER2 (ENSOKIG00005040071)	WHAMM (ENSOKIG00005040049)	FSD2 (ENSOKIG00005040033)	ENSOKIG00005040012	ENSOKIG00005040000	pde8a (ENSOKIG00005039876)	gatm (ENSOKIG00005039835)	ENSOKIG00005039108	hdc (ENSOKIG00005038039)	ENSOKIG00005037965
Chinook salmon	MODERN SPECIES	785																rab11a (ENSOTSG00005038727) #22	si:dkey-22o12.2 (ENSOTSG00005038731)
Huchen	MODERN SPECIES	6200																rab11a (ENSHHUG00000018611) #22
Protacanthopterygii	ANCESTRAL SPECIES	10	ENSGT00940000158358.a	ENSGT00940000160967.e	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT00940000158575	ENSGT01030000234614.C	ENSGT00940000156926.c	ENSGT00390000008107.c.b	ENSGT00940000155744.t.b	ENSGT00940000169185	ENSGT00440000038107	ENSGT00530000062962.b.a.f #15	ENSGT00390000009486 #16	ENSGT01030000234532.B.e.b.f #17	ENSGT00940000155836.A ##21	ENSGT00940000154914.wb #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00390000010331 #28	ENSGT00940000158146.b.j #32	ENSGT00940000153499.b.b.d.a.b #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00390000015942	ENSGT00940000158440.g.b	ENSGT00510000047881	ENSGT00940000155837.o	ENSGT00990000203778
Salmoninae	ANCESTRAL SPECIES	271	ENSGT00940000157850	ENSGT01030000234953	ENSGT00940000159282	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107	ENSGT00530000062962.b.a.f #15	ENSGT00390000009486 #16	ENSGT00940000155836.A ##21	ENSGT00940000154914.wb #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00390000010331 #28	ENSGT00940000158146.b.j #32	ENSGT00940000153499.b.b.d.a.b.g #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00940000158440.g.b.g.b	ENSGT01030000234539.a.a.b.a.b.a.b.c.b
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	170															ENSGT01030000234532.B.e.b.f #17	ENSGT00940000154914.wb.a #22	ENSGT00390000018145.r #29	ENSGT00390000010331.k.b #28	ENSGT00390000015942	ENSGT00940000158440.g.b.g.a	ENSGT01030000234539.a.a.b.a.b.a.b.c.a	ENSGT00940000154257.a	ENSGT00940000155837.o	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00930000151035.a	ENSGT00390000012069	ENSGT00940000165047
Salmo	ANCESTRAL SPECIES	199																ENSGT00940000154914.wb.a #22	ENSGT00390000018145.r #29	ENSGT00390000010331.k.b #28	ENSGT00390000015942	ENSGT00940000158440.g.b.g.a	ENSGT01030000234539.a.a.b.a.b.a.b.c.a	ENSGT00940000154257.a	ENSGT00940000155837.o	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00930000151035.a	ENSGT00390000012069	ENSGT00940000165047	ENSGT00390000018587.f.d
Atlantic salmon	MODERN SPECIES	1														ENSSSAG00000101168	ENSSSAG00000102067	ENSSSAG00000090092 #22	ENSSSAG00000047793 #29	C15orf61 (ENSSSAG00000095506)	ENSSSAG00000101813	ENSSSAG00000111744	SKOR1 (ENSSSAG00000070841)	PIAS1 (ENSSSAG00000082518)	ENSSSAG00000048640	ENSSSAG00000044381	ENSSSAG00000044863	kbtbd4 (ENSSSAG00000092517)	ENSSSAG00000104921	ENSSSAG00000087506	ighmbp2 (ENSSSAG00000044095)	chid1 (ENSSSAG00000044253)	pddc1 (ENSSSAG00000044282)
River trout	MODERN SPECIES	37					vwf (ENSSTUG00000002844)	SLC24A1 (ENSSTUG00000002759) #17	ENSSTUG00000002749	ENSSTUG00000002742	cyp11a1.1 (ENSSTUG00000002155)	ENSSTUG00000002125	cib2 (ENSSTUG00000002119)	ENSSTUG00000002102	ENSSTUG00000002089	GCNT3 (ENSSTUG00000001883)	foxb1a (ENSSTUG00000001625)	rab11a (ENSSTUG00000001124) #22	rpl4 (ENSSTUG00000010410) #29	snapc5 (ENSSTUG00000010396) #28	zgc:162898 (ENSSTUG00000010384)	skor1b (ENSSTUG00000010371)	PIAS1 (ENSSTUG00000010120)	anxa2a (ENSSTUG00000009997)	kif23 (ENSSTUG00000009676)	ENSSTUG00000009648	kbtbd4 (ENSSTUG00000009644)	rapsn (ENSSTUG00000009640)	ighmbp2 (ENSSTUG00000007819)	chid1 (ENSSTUG00000007479)	gatd1 (ENSSTUG00000007459)	tmem138 (ENSSTUG00000007448)	tmem258 (ENSSTUG00000007445)
Oncorhynchus	ANCESTRAL SPECIES	10					ENSGT00940000160522.c.a.e	ENSGT00940000159331.b.r.b	ENSGT00940000155024.a.a	ENSGT00940000157327.o.a	ENSGT01030000234953.c	ENSGT00390000015516	ENSGT00940000160967.e.c	ENSGT00940000158575	ENSGT00390000008107.c.b	ENSGT00940000169185	ENSGT01030000234532.B.e.b.f #17	ENSGT00940000154914.wb.a #22	ENSGT00390000018145.r #29	ENSGT00390000010331.k.b #28	ENSGT00390000015942	ENSGT00940000158440.g.b.g.a	ENSGT01030000234539.a.a.b.a.b.a.b.c.a	ENSGT00940000154257.a	ENSGT00940000155837.o	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00930000151035.a	ENSGT00390000012069	ENSGT00940000165047	ENSGT00390000010089.g.b	ENSGT00940000160990.f
Oncorhynchus_a	ANCESTRAL SPECIES	5				ENSGT00940000155810	ENSGT00940000160522.c.a.e	ENSGT00940000159331.b.r.b	ENSGT00940000155024.a.a	ENSGT00940000157327.o.a	ENSGT01030000234953.c	ENSGT00390000015516	ENSGT00940000160967.e.c	ENSGT00940000158575	ENSGT00390000008107.c.b	ENSGT00940000169185	ENSGT01030000234532.B.e.b.f #17	ENSGT00940000154914.wb.a #22	ENSGT00390000018145.r #29	ENSGT00390000010331.k.b #28	ENSGT00390000015942	ENSGT00940000158440.g.b.g.a	ENSGT01030000234539.a.a.b.a.b.a.b.c.a	ENSGT00940000154257.a	ENSGT00940000155837.o	ENSGT00990000203778	ENSGT00940000158775	ENSGT00390000016785	ENSGT00930000151035.a	ENSGT00390000012069	ENSGT00940000165047	ENSGT00390000018587.f.d	ENSGT00390000010089.g.b
Chinook salmon	MODERN SPECIES	10													ENSOTSG00005041541	ENSOTSG00005041503	SLC24A1 (ENSOTSG00005041501) #17	rab11a (ENSOTSG00005041500) #22	rpl4 (ENSOTSG00005041471) #29	snapc5 (ENSOTSG00005041469) #28	zgc:162898 (ENSOTSG00005041468)	cyp11a1.1 (ENSOTSG00005040510)	islr2 (ENSOTSG00005040491)	commd4 (ENSOTSG00005040490)	ENSOTSG00005040488	cib2 (ENSOTSG00005040482)	vwf (ENSOTSG00005033994)	foxb1a (ENSOTSG00005033981)	GCNT3 (ENSOTSG00005033980)	trpm1b (ENSOTSG00005031254)	ENSOTSG00005031237	KCNC1 (ENSOTSG00005031235)	ENSOTSG00005031234
Coho salmon	MODERN SPECIES	14	ENSOKIG00005045762	vwf (ENSOKIG00005045462)	FOXB1 (ENSOKIG00005045405)	GCNT3 (ENSOKIG00005045393)	trpm1b (ENSOKIG00005041104)	CIB2 (ENSOKIG00005040734)	ENSOKIG00005040723	commd4 (ENSOKIG00005040702)	ENSOKIG00005040693	ENSOKIG00005040680	cyp11a1.1 (ENSOKIG00005040305)	ENSOKIG00005039756	ENSOKIG00005039731	ENSOKIG00005039713 #17	rpl4 (ENSOKIG00005039641) #29	ENSOKIG00005039600 #22	ENSOKIG00005039588 #28	zgc:162898 (ENSOKIG00005039578)	ENSOKIG00005039566	ENSOKIG00005039560	ENSOKIG00005039513	SKOR1 (ENSOKIG00005039477)	PIAS1 (ENSOKIG00005039175)	anxa2a (ENSOKIG00005039046)	ENSOKIG00005038998	KIF23 (ENSOKIG00005038931)	ENSOKIG00005038923	ENSOKIG00005038909	kbtbd4 (ENSOKIG00005038881)	rapsn (ENSOKIG00005038841)	ENSOKIG00005038835
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000060302	ENSOMYG00000074890	ENSOMYG00000052025	ENSOMYG00000033823	ENSOMYG00000033832	ENSOMYG00000033849	ENSOMYG00000075775	ENSOMYG00000062320	ENSOMYG00000033911	ENSOMYG00000033920	ENSOMYG00000033925	ENSOMYG00000071636	ENSOMYG00000034545	ENSOMYG00000034533	ENSOMYG00000048854 #17	rab11a (ENSOMYG00000049517) #22	ENSOMYG00000034225 #29	ENSOMYG00000034189 #28	ENSOMYG00000055265	C15orf61 (ENSOMYG00000034182)	SKOR1 (ENSOMYG00000033800)	PIAS1 (ENSOMYG00000033714)	ENSOMYG00000033646	ENSOMYG00000030575	ENSOMYG00000029914	kbtbd4 (ENSOMYG00000029900)	ENSOMYG00000061496	ighmbp2 (ENSOMYG00000028240)	ENSOMYG00000027692	ENSOMYG00000027681	tmem138 (ENSOMYG00000027670)
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00940000157850	ENSGT01030000234953	ENSGT00940000159282	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107	ENSGT00530000062962.b.a.f #15	ENSGT00390000009486 #16	ENSGT00940000155836.A ##21	ENSGT00940000154914.wb.b #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145.q #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00390000010331.k.a #28	ENSGT00940000158146.b.j #32	ENSGT00940000153499.b.b.d.a.b.g #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00940000158440.g.b.g.b	ENSGT01030000234539.a.a.b.a.b.a.b.c.b	ENSGT01030000234519.e.a.a.a.b.f.f	ENSGT00510000047881	ENSGT00510000048454
Oncorhynchus	ANCESTRAL SPECIES	90	ENSGT01030000234953.d	ENSGT01100000264496	ENSGT00940000159282	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107.n	ENSGT00530000062962.b.a.f #15	ENSGT00390000009486 #16	ENSGT00940000155836.A ##21	ENSGT00940000154914.wb.b #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145.q #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00390000010331.k.a #28	ENSGT00940000158146.b.j #32	ENSGT00940000153499.b.b.d.a.b.g #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00940000158440.g.b.g.b	ENSGT01030000234539.a.a.b.a.b.a.b.c.b	ENSGT01030000234519.e.a.a.a.b.f.f	ENSGT00510000047881
Rainbow trout	MODERN SPECIES	22	CA12 (ENSOMYG00000015551)	ENSOMYG00000015565	neil1 (ENSOMYG00000015576)	sema7a (ENSOMYG00000015585)	islr2 (ENSOMYG00000056245)	stra6 (ENSOMYG00000015816)	ENSOMYG00000067561	ENSOMYG00000057849	ENSOMYG00000050176	stoml1 (ENSOMYG00000015767)	ENSOMYG00000058050	ppcdc (ENSOMYG00000023939)	ENSOMYG00000048541 #15	ints14 (ENSOMYG00000015775) #16	ENSOMYG00000051025 ##21	rab11a (ENSOMYG00000028574) #22	map2k1 (ENSOMYG00000070762) #27	rpl4 (ENSOMYG00000015672) #29	zwilch (ENSOMYG00000064330) #30	LCTL (ENSOMYG00000051376) #31	snapc5 (ENSOMYG00000026529) #28	smad6b (ENSOMYG00000035050) #32	ENSOMYG00000074334	ENSOMYG00000055253	smad3b (ENSOMYG00000040088) #33	ENSOMYG00000023824 #34	iqch (ENSOMYG00000073930) #35	skor1b (ENSOMYG00000015835)	ENSOMYG00000071075	ENSOMYG00000054822	ENSOMYG00000064085
Oncorhynchus_a	ANCESTRAL SPECIES	115	ENSGT01030000234953.d	ENSGT01100000264496	ENSGT00940000159282	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107.n	ENSGT00530000062962.b.a.f #15	ENSGT00390000009486 #16	ENSGT00940000155836.A ##21	ENSGT00940000154914.wb.b #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145.q #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00390000010331.k.a #28	ENSGT00390000010331.l #28	ENSGT00940000158146.b.j #32
Chinook salmon	MODERN SPECIES	418																rab11a (ENSOTSG00005025830) #22	ENSOTSG00005025831
Coho salmon	MODERN SPECIES	1	CA12 (ENSOKIG00005014986)	MAN2C1 (ENSOKIG00005015148)	ENSOKIG00005018089	neil1 (ENSOKIG00005018095)	sema7a (ENSOKIG00005018119)	islr2 (ENSOKIG00005018126)	stra6 (ENSOKIG00005018139)	ENSOKIG00005018210	stoml1 (ENSOKIG00005018220)	ARIH1 (ENSOKIG00005018296)	ppcdc (ENSOKIG00005018398)	hacd3 (ENSOKIG00005018449) #15	ints14 (ENSOKIG00005018507) #16	ENSOKIG00005018559	ENSOKIG00005018622 ##21	rab11a (ENSOKIG00005018981) #22	ENSOKIG00005019075 ##24	ENSOKIG00005019846	ENSOKIG00005019852	ENSOKIG00005019867	ENSOKIG00005019877	ENSOKIG00005019888	map2k1 (ENSOKIG00005019896) #27	rpl4 (ENSOKIG00005019951) #29	zwilch (ENSOKIG00005020066) #30	LCTL (ENSOKIG00005020135) #31	snapc5 (ENSOKIG00005020275) #28	smad6b (ENSOKIG00005020286) #32	ENSOKIG00005020296	ENSOKIG00005020309	CD151 (ENSOKIG00005020322)
Salmo	ANCESTRAL SPECIES	91	ENSGT00940000157850	ENSGT01030000234953	ENSGT00940000159282	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00940000158358.a	ENSGT00940000160967.e.d	ENSGT00940000153246.a.a.a.c	ENSGT00390000017366	ENSGT01030000234614.C	ENSGT00940000155744.t.b	ENSGT00440000038107	ENSGT00530000062962.b.a.f #15	ENSGT00390000009486 #16	ENSGT00940000155836.A ##21	ENSGT00940000154914.wb.b #22	ENSGT00940000155333.A.b ##24	ENSGT00940000153487.b.b #27	ENSGT00390000018145.q #29	ENSGT00390000013696 #30	ENSGT00940000157369.a #31	ENSGT00940000180676	ENSGT00940000158146.b.j #32	ENSGT00940000153499.b.b.d.a.b.g #33	ENSGT00390000007218 #34	ENSGT00390000008908 #35	ENSGT00940000158440.g.b.g.b	ENSGT01030000234539.a.a.b.a.b.a.b.c.b	ENSGT01030000234519.e.a.a.a.b.f.f	ENSGT00510000047881	ENSGT00510000048454
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000118913	ENSSSAG00000090937	ENSSSAG00000008687	ENSSSAG00000115163	ENSSSAG00000098331	ENSSSAG00000098361	islr2 (ENSSSAG00000098188)	stra6 (ENSSSAG00000103656)	ENSSSAG00000009328	stoml1 (ENSSSAG00000009303)	ENSSSAG00000098010	ppcdc (ENSSSAG00000010656)	hacd3 (ENSSSAG00000009344) #15	ints14 (ENSSSAG00000106122) #16	ENSSSAG00000009435 ##21	rab11a (ENSSSAG00000083201) #22	ENSSSAG00000086055 ##24	map2k1 (ENSSSAG00000073424) #27	rpl4 (ENSSSAG00000008596) #29	zwilch (ENSSSAG00000008578) #30	LCTL (ENSSSAG00000073442) #31	snapc5 (ENSSSAG00000102443) #28	ENSSSAG00000073427	ENSSSAG00000117817	smad6 (ENSSSAG00000073418) #32	smad3b (ENSSSAG00000115090) #33	aagab (ENSSSAG00000082892) #34	iqch (ENSSSAG00000073414) #35	skor1b (ENSSSAG00000073404)	ENSSSAG00000073337	ENSSSAG00000073314
Huchen	MODERN SPECIES	12573																rab11a (ENSHHUG00000016698) #22
Northern pike	MODERN SPECIES	18	islr2 (ENSELUG00000025122)	stra6 (ENSELUG00000000108)	pycr1b (ENSELUG00000030476)	ENSELUG00000026709	cyp11a1.1 (ENSELUG00000003333)	stoml1 (ENSELUG00000003307)	nr2e3 (ENSELUG00000003264)	hexa (ENSELUG00000003240)	ARIH1 (ENSELUG00000003198)	ENSELUG00000003161	ppcdc (ENSELUG00000003138)	hacd3 (ENSELUG00000003118) #15	ints14 (ENSELUG00000003084) #16	SLC24A1 (ENSELUG00000003062) #17	ENSELUG00000003043 ##21	rab11a (ENSELUG00000025088) #22	ENSELUG00000002960 ##24	ENSELUG00000030296	map2k1 (ENSELUG00000002907) #27	ENSELUG00000002918	rpl4 (ENSELUG00000002885) #29	zwilch (ENSELUG00000002833) #30	ENSELUG00000029781	ENSELUG00000025180	LCTL (ENSELUG00000002819) #31	ENSELUG00000029160	ENSELUG00000032451	ENSELUG00000002781	smad6b (ENSELUG00000024569) #32	ENSELUG00000030325	ENSELUG00000024546
Acanthomorphata	ANCESTRAL SPECIES	139																ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00730000111007.a.b
Cod	DUPLICATION
Cod	MODERN SPECIES	22	sema7a (ENSGMOG00000008331)	islr2 (ENSGMOG00000008332)	stra6 (ENSGMOG00000008334)	ENSGMOG00000008336	cyp11a1.1 (ENSGMOG00000008338)	nr2e3 (ENSGMOG00000008342)	hexa (ENSGMOG00000008345)	arih1 (ENSGMOG00000008347)	ENSGMOG00000036344	ppcdc (ENSGMOG00000008350)	hacd3 (ENSGMOG00000008351) #15	ints14 (ENSGMOG00000008352) #16	SLC24A1 (ENSGMOG00000024598) #17	ENSGMOG00000008354 ##21	ENSGMOG00000036396	ENSGMOG00000008355 #22	ENSGMOG00000008356 ##24	map2k1 (ENSGMOG00000008358) #27	rpl4 (ENSGMOG00000008359) #29	zwilch (ENSGMOG00000008360) #30	LCTL (ENSGMOG00000008361) #31	snapc5 (ENSGMOG00000036981) #28	smad6b (ENSGMOG00000008363) #32	smad3b (ENSGMOG00000029371) #33	aagab (ENSGMOG00000008365) #34	zgc:162898 (ENSGMOG00000008367)	skor1b (ENSGMOG00000033826)	PIAS1 (ENSGMOG00000008372)	morf4l1 (ENSGMOG00000008374)	kif23 (ENSGMOG00000017492)	ddb2 (ENSGMOG00000017517)
Cod	MODERN SPECIES	5	ENSGMOG00000033842	nae1 (ENSGMOG00000001307)	dync1li2 (ENSGMOG00000001336)	cmtm3 (ENSGMOG00000001358)	galns (ENSGMOG00000001371)	trappc2l (ENSGMOG00000001406)	PABPN1L (ENSGMOG00000001475)	CBFA2T3 (ENSGMOG00000001484)	ACSF3 (ENSGMOG00000001508)	cdh15 (ENSGMOG00000001534)	ENSGMOG00000001565	ENSGMOG00000035938	ENSGMOG00000035369	ENSGMOG00000004049	ENSGMOG00000004071	ENSGMOG00000004096 #22	ENSGMOG00000011768 ##24	dis3l (ENSGMOG00000003012) #25	ENSGMOG00000015022 #31	crybgx (ENSGMOG00000015010)	ENSGMOG00000014993	ENSGMOG00000014942	ENSGMOG00000014900	ENSGMOG00000014867	ENSGMOG00000014850	ENSGMOG00000005408	ENSGMOG00000033701	ENSGMOG00000018344	ENSGMOG00000010812	ENSGMOG00000028784	ENSGMOG00000022909
Euacanthomorphacea	ANCESTRAL SPECIES	84																ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00730000111007.a.b
Pinecone sodierfish	MODERN SPECIES	17	ENSMMDG00005019218	slc9a5 (ENSMMDG00005019221)	FHOD1 (ENSMMDG00005019244)	ENSMMDG00005019357	ENSMMDG00005019359	ENSMMDG00005019361	ENSMMDG00005019362	ENSMMDG00005019365	ENSMMDG00005019367	cebpg (ENSMMDG00005019368)	cebpa (ENSMMDG00005019371)	gpatch1 (ENSMMDG00005019378)	ENSMMDG00005019416	trpm1a (ENSMMDG00005019434)	ENSMMDG00005019445	rab11a (ENSMMDG00005019446) #22	ENSMMDG00005019448 ##24	dis3l (ENSMMDG00005019463) #25	tipin (ENSMMDG00005019539) #26	ENSMMDG00005019542	ENSMMDG00005019543	sh3gl3a (ENSMMDG00005019544)	gjd6 (ENSMMDG00005019546)	ENSMMDG00005019549	lmnl3 (ENSMMDG00005002673)	ENSMMDG00005002705	saxo2 (ENSMMDG00005002734)	EFL1 (ENSMMDG00005002848)	ENSMMDG00005003845	mex3b (ENSMMDG00005003852)	TMC3 (ENSMMDG00005003861)
Percomorphaceae	ANCESTRAL SPECIES	15	ENSGT00940000160309.e.b	ENSGT00940000178634	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00390000004417.b	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00730000111007.a.b
Tiger tail seahorse	MODERN SPECIES	136	ENSHCOG00000006226	ENSHCOG00000006213	GABARAPL2 (ENSHCOG00000006062)	ENSHCOG00000006007	ENSHCOG00000005994	rpl12 (ENSHCOG00000005990)	pole3 (ENSHCOG00000005972)	kmt5b (ENSHCOG00000005960)	nxpe3 (ENSHCOG00000005947)	ccnb2 (ENSHCOG00000005943)	cd82a (ENSHCOG00000005923)	tspan18a (ENSHCOG00000005835)	HERC1 (ENSHCOG00000005794)	dapk2a (ENSHCOG00000005672)	ENSHCOG00000005661	rab11a (ENSHCOG00000005652) #22	ENSHCOG00000005631	ENSHCOG00000005626 ##24	dis3l (ENSHCOG00000000183) #25	tipin (ENSHCOG00000005560) #26	lctla (ENSHCOG00000005554) #31	crybgx (ENSHCOG00000005524)	cars1 (ENSHCOG00000005493)	pex16 (ENSHCOG00000005418)	arfgap2 (ENSHCOG00000005405)	ppfia1 (ENSHCOG00000005363)	ENSHCOG00000005335	ENSHCOG00000000154	ENSHCOG00000005320	NOCT (ENSHCOG00000005299)	ENSHCOG00000005297
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00940000178634	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00390000004417.b	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT01010000230193	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00390000004417.b	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000155405	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568.l	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00730000111007.a.b
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00390000004417.b	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568.l	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000011262.e.b	ENSGT00950000182973.b.a	ENSGT00390000007753.b
Zig-zag eel	MODERN SPECIES	17	ENSMAMG00000017831	ENSMAMG00000017751	ENSMAMG00000028301	ENSMAMG00000025929	ENSMAMG00000017664	ENSMAMG00000025257	ENSMAMG00000024511	ENSMAMG00000027922	ENSMAMG00000017556	ENSMAMG00000024446	ENSMAMG00000017520	ENSMAMG00000026774	ENSMAMG00000017358	ENSMAMG00000025603	ENSMAMG00000017337	RAB11A (ENSMAMG00000027414) #22	ENSMAMG00000017293 ##24	dis3l (ENSMAMG00000017229) #25	tipin (ENSMAMG00000017203) #26	lctla (ENSMAMG00000017174) #31	crybgx (ENSMAMG00000017150)	ENSMAMG00000017121	ENSMAMG00000017073	ENSMAMG00000017043	ENSMAMG00000017001	ENSMAMG00000016992	TNNI2 (ENSMAMG00000027039)	ENSMAMG00000016896	ENSMAMG00000016868	ero1a (ENSMAMG00000016859)	SAMD4A (ENSMAMG00000016799)
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000161887	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568.l	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000011262.e.b	ENSGT00950000182973.b.a	ENSGT00390000007753.b
Climbing perch	MODERN SPECIES	16	ENSATEG00000022791	ENSATEG00000025456	ENSATEG00000022749	ENSATEG00000022743	ENSATEG00000022729	ENSATEG00000022724	ENSATEG00000022706	ENSATEG00000026022	ENSATEG00000022688	ENSATEG00000022675	ENSATEG00000022662	ENSATEG00000022648	ENSATEG00000022577	ENSATEG00000022559	ENSATEG00000022546	RAB11A (ENSATEG00000023730) #22	ENSATEG00000022505 ##24	dis3l (ENSATEG00000022464) #25	tipin (ENSATEG00000022453) #26	lctla (ENSATEG00000022437) #31	crybgx (ENSATEG00000022426)	ENSATEG00000022355	ENSATEG00000022291	ENSATEG00000022262	ENSATEG00000022248	ENSATEG00000022233	ENSATEG00000022204	ENSATEG00000022132	ENSATEG00000022101	ero1a (ENSATEG00000022081)	SAMD4A (ENSATEG00000022040)
Carangaria	ANCESTRAL SPECIES	11	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000155405	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568.l	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00730000111007.a.b
Carangaria_A	ANCESTRAL SPECIES	19	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000155405	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890
Seriola	ANCESTRAL SPECIES	30	ENSGT00940000174889	ENSGT00940000159830	ENSGT00940000161181.c	ENSGT00940000157355.c	ENSGT00940000159407.q	ENSGT00950000182963.b.a.d	ENSGT00940000173933.b	ENSGT00940000158077	ENSGT00390000016316	ENSGT00390000011024	ENSGT00390000008044	ENSGT00940000159726	ENSGT01100000263512.b.b.a.i	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000012913.b	ENSGT00950000183152.A	ENSGT00970000193372.a.a.tc.a	ENSGT00940000156756	ENSGT00390000011190	ENSGT00940000157324	ENSGT00510000046704.b.b	ENSGT00940000158441	ENSGT00510000047412.b	ENSGT00940000156422
Yellowtail amberjack	MODERN SPECIES	2798													GRPR (ENSSLDG00000009300)	dapk2a (ENSSLDG00000009361)	ENSSLDG00000009418	rab11a (ENSSLDG00000009438) #22	ENSSLDG00000009469 ##24	dis3l (ENSSLDG00000009525) #25	tipin (ENSSLDG00000009591) #26	lctla (ENSSLDG00000009618) #31	crybgx (ENSSLDG00000009695)	TM6SF1 (ENSSLDG00000009722)	ENSSLDG00000009759	ap1s2 (ENSSLDG00000009877)	BTBD1 (ENSSLDG00000009893)	RAMAC (ENSSLDG00000009924)	HOMER2 (ENSSLDG00000009944)	homer2 (ENSSLDG00000009970)	WHAMM (ENSSLDG00000009986)	FSD2 (ENSSLDG00000010016)	ENSSLDG00000010060
Greater amberjack	MODERN SPECIES	3	ENSSDUG00000002113	ppef1 (ENSSDUG00000002125)	RS1 (ENSSDUG00000002148)	cdkl5 (ENSSDUG00000002201)	SCML2 (ENSSDUG00000002252)	NHS (ENSSDUG00000002264)	ENSSDUG00000002294	ace2 (ENSSDUG00000002311)	ENSSDUG00000002347	zgc:113276 (ENSSDUG00000002364)	pir (ENSSDUG00000002403)	vegfd (ENSSDUG00000002443)	GRPR (ENSSDUG00000002486)	dapk2a (ENSSDUG00000002533)	ENSSDUG00000002555	rab11a (ENSSDUG00000002580) #22	ENSSDUG00000002599 ##24	dis3l (ENSSDUG00000002630) #25	tipin (ENSSDUG00000002701) #26	lctla (ENSSDUG00000002714) #31	crybgx (ENSSDUG00000002750)	TM6SF1 (ENSSDUG00000002771)	ZRSR2 (ENSSDUG00000002784)	ap1s2 (ENSSDUG00000002801)	BTBD1 (ENSSDUG00000002814)	RAMAC (ENSSDUG00000002843)	homer2 (ENSSDUG00000002857)	WHAMM (ENSSDUG00000002890)	FSD2 (ENSSDUG00000002921)	ENSSDUG00000003044	pde8a (ENSSDUG00000003079)
Barramundi perch	MODERN SPECIES	100	galr1b (ENSLCAG00010006750)	ENSLCAG00010006746	VPS13C (ENSLCAG00010005593)	shcbp1 (ENSLCAG00010005362)	mtfmt (ENSLCAG00010005345)	celf1 (ENSLCAG00010005339)	arfgap2 (ENSLCAG00010005307)	pex16 (ENSLCAG00010005280)	cars1 (ENSLCAG00010004799)	ccnb2 (ENSLCAG00010004723)	cd82a (ENSLCAG00010004720)	TSPAN18 (ENSLCAG00010004718)	ENSLCAG00010004716	dapk2a (ENSLCAG00010004706)	ENSLCAG00010004701	rab11a (ENSLCAG00010004697) #22	ENSLCAG00010004683 ##24	dis3l (ENSLCAG00010004501) #25	tipin (ENSLCAG00010004459) #26	lctla (ENSLCAG00010004446) #31	crybgx (ENSLCAG00010004435)	ccnb2 (ENSLCAG00010004421)	kmt5b (ENSLCAG00010004407)	pole3 (ENSLCAG00010004399)	rpl12 (ENSLCAG00010004367)	ENSLCAG00010004346	ENSLCAG00010004337	ENSLCAG00010004321	GABARAPL2 (ENSLCAG00010004310)	ENSLCAG00010004303	zgc:194679 (ENSLCAG00010004301)
Pleuronectoidei	ANCESTRAL SPECIES	52													ENSGT00940000158481.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.g.b ##24	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568.l	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b
Turbot	MODERN SPECIES	17	SHANK2 (ENSSMAG00000027423)	ENSSMAG00000030149	PPFIA1 (ENSSMAG00000026619)	ENSSMAG00000026740	ENSSMAG00000003524	ENSSMAG00000003550	ENSSMAG00000003662	ENSSMAG00000035843	ENSSMAG00000003803	ENSSMAG00000004225	ENSSMAG00000003951	ENSSMAG00000033814	ENSSMAG00000030745	ENSSMAG00000003980	ENSSMAG00000031269	RAB11A (ENSSMAG00000033097) #22	ENSSMAG00000030576	ENSSMAG00000035419 ##24	dis3l (ENSSMAG00000004147) #25	tipin (ENSSMAG00000004166) #26	lctla (ENSSMAG00000004176) #31	crybgx (ENSSMAG00000004208)	ENSSMAG00000003908	ENSSMAG00000004238	ENSSMAG00000037704	ENSSMAG00000004282	ENSSMAG00000004313	ENSSMAG00000004326	ENSSMAG00000004346	ENSSMAG00000004356	zgc:194679 (ENSSMAG00000002484)
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	15	fgf4 (ENSCSEG00000007038)	fgf19 (ENSCSEG00000007061)	ENSCSEG00000007084	ankdd1a (ENSCSEG00000007096)	znf414 (ENSCSEG00000007111)	mtch2 (ENSCSEG00000007131)	ENSCSEG00000007284	ENSCSEG00000007291	cd82a (ENSCSEG00000007299)	ENSCSEG00000007329	ENSCSEG00000007344	ENSCSEG00000007348	ENSCSEG00000007355	ENSCSEG00000007366	dapk2a (ENSCSEG00000007374)	rab11a (ENSCSEG00000007383) #22	ENSCSEG00000007393 ##24	slc7a6os (ENSCSEG00000007425)	slc7a6 (ENSCSEG00000007431)	adgrg1 (ENSCSEG00000007445)	SYAP1 (ENSCSEG00000007461)	phospho2 (ENSCSEG00000007475)	ENSCSEG00000007483	CDH8 (ENSCSEG00000007497)	ENSCSEG00000007516	irx5a (ENSCSEG00000007529)	irx6a (ENSCSEG00000007538)	mmp2 (ENSCSEG00000007565)	lpcat2 (ENSCSEG00000007587)	SLC6A2 (ENSCSEG00000007621)	SLC12A4 (ENSCSEG00000007684)
Tongue sole	MODERN SPECIES	6											ENSCSEG00000020675	ENSCSEG00000020673	ENSCSEG00000020672	fhl1a (ENSCSEG00000020666)	slc9a6a (ENSCSEG00000020650)	ENSCSEG00000020648 #22	abhd18 (ENSCSEG00000020646)	igbp1 (ENSCSEG00000020645)	ENSCSEG00000020644	STOX2 (ENSCSEG00000020642)	ENSCSEG00000020641	csnk1a1 (ENSCSEG00000020638)	FBXO38 (ENSCSEG00000020635)	tmem129 (ENSCSEG00000020634)	magt1 (ENSCSEG00000020632)	ENSCSEG00000020631	rnf103 (ENSCSEG00000020629)	nkx1.2lb (ENSCSEG00000020405)	uvssa (ENSCSEG00000020401)	SIL1 (ENSCSEG00000020392)	spdl1 (ENSCSEG00000020383)
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00390000004417.b	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000153561.a
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT00940000178634	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00390000004417.b	ENSGT00940000163421.a.d.a	ENSGT00940000161887	ENSGT00940000155010.a	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.a	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b
Fugu	MODERN SPECIES	4	ENSTRUG00000011870	GABARAPL2 (ENSTRUG00000022747)	ENSTRUG00000011767	rpl12 (ENSTRUG00000021921)	pole3 (ENSTRUG00000032058)	kmt5b (ENSTRUG00000022914)	ccnb2 (ENSTRUG00000011147)	ube2g1a (ENSTRUG00000011134)	cd82a (ENSTRUG00000011027)	ENSTRUG00000029380	tspan18a (ENSTRUG00000020577)	ENSTRUG00000029860	HERC1 (ENSTRUG00000029848)	dapk2a (ENSTRUG00000010609)	ENSTRUG00000024673	rab11a (ENSTRUG00000020792) #22	ENSTRUG00000009956 ##24	tipin (ENSTRUG00000024319) #26	lctla (ENSTRUG00000009494) #31	crybgx (ENSTRUG00000009403)	ccnb2 (ENSTRUG00000021973)	cars1 (ENSTRUG00000008686)	pex16 (ENSTRUG00000008505)	arfgap2 (ENSTRUG00000008070)	ENSTRUG00000008059	ENSTRUG00000026832	ENSTRUG00000025667	ppfia1 (ENSTRUG00000007699)	CTTN (ENSTRUG00000007235)	SHANK2 (ENSTRUG00000006508)	ENSTRUG00000031361
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00390000004417.b	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.g.a ##24	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00940000156431	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565
Ballan wrasse	MODERN SPECIES	784									ENSLBEG00000026997	ENSLBEG00000026987	ENSLBEG00000026977	ENSLBEG00000026963	ENSLBEG00000026956	dapk2a (ENSLBEG00000026900)	ENSLBEG00000026871	rab11a (ENSLBEG00000026857) #22	ENSLBEG00000026833 ##24
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000155405	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.g.a ##24	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000153561.a
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000155405	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.g.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.a.d	ENSGT00940000163723.A.f.b.h	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000153561.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00390000004417.b	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000155405	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.g.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.a.d	ENSGT00940000163723.A.f.a.c	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000153561.a
European seabass	MODERN SPECIES	18	ENSDLAG00005022437	ENSDLAG00005022501	ENSDLAG00005030498	ENSDLAG00005033959	ENSDLAG00005022504	ENSDLAG00005022516	ENSDLAG00005027740	ENSDLAG00005022538	ENSDLAG00005022562	ENSDLAG00005022573	ENSDLAG00005022575	ENSDLAG00005031844	ENSDLAG00005022632	ENSDLAG00005032472	ENSDLAG00005030332	RAB11A (ENSDLAG00005030246) #22	ENSDLAG00005023499 ##24	dis3l (ENSDLAG00005008734) #25	tipin (ENSDLAG00005008836) #26	lctla (ENSDLAG00005008857) #31	crybgx (ENSDLAG00005009036)	ENSDLAG00005009046	ENSDLAG00005009095	ENSDLAG00005010168	ENSDLAG00005010356	ENSDLAG00005010448	ENSDLAG00005003125	ENSDLAG00005034599	ENSDLAG00005003584	PPFIA1 (ENSDLAG00005010588)	ENSDLAG00005015464
Large yellow croaker	MODERN SPECIES	480	aph1b (ENSLCRG00005003014)	OTOG (ENSLCRG00005003017)	nqo1 (ENSLCRG00005003029)	ENSLCRG00005003039	ENSLCRG00005003042	ENSLCRG00005003045	ENSLCRG00005003048	rpl12 (ENSLCRG00005003051)	pole3 (ENSLCRG00005003071)	kmt5b (ENSLCRG00005003072)	ccnb2 (ENSLCRG00005003075)	cd82a (ENSLCRG00005003078)	tspan18a (ENSLCRG00005003082)	ENSLCRG00005003084	dapk2a (ENSLCRG00005003886)	rab11a (ENSLCRG00005003890) #22	tacr1b (ENSLCRG00005003894)	SLC4A5 (ENSLCRG00005003912)	ENSLCRG00005005760	SEZ6L (ENSLCRG00005005778)	grk3 (ENSLCRG00005006651)	cryba4 (ENSLCRG00005006673)	crybb1 (ENSLCRG00005006674)	acads (ENSLCRG00005006677)	cldn5b (ENSLCRG00005006728)	SEPTIN5 (ENSLCRG00005006734)	MCTP1 (ENSLCRG00005007123)	ENSLCRG00005008051	ENSLCRG00005008052	ENSLCRG00005008054	ENSLCRG00005008057
Gilthead seabream	MODERN SPECIES	18	ENSSAUG00010018644	NQO2 (ENSSAUG00010018647)	GABARAPL2 (ENSSAUG00010018669)	ENSSAUG00010018675	ENSSAUG00010018679	ENSSAUG00010018681	rpl12 (ENSSAUG00010018685)	pole3 (ENSSAUG00010018691)	kmt5b (ENSSAUG00010018693)	ccnb2 (ENSSAUG00010018695)	cd82a (ENSSAUG00010018700)	tspan18a (ENSSAUG00010018721)	HERC1 (ENSSAUG00010018739)	dapk2a (ENSSAUG00010018803)	ENSSAUG00010019086	rab11a (ENSSAUG00010019089) #22	ENSSAUG00010019106 ##24	ENSSAUG00010019213 ##24	dis3l (ENSSAUG00010019226) #25	tipin (ENSSAUG00010019272) #26	lctla (ENSSAUG00010019278) #31	crybgx (ENSSAUG00010019299)	ENSSAUG00010019302	ccnb2 (ENSSAUG00010019305)	cars1 (ENSSAUG00010019318)	pex16 (ENSSAUG00010019614)	arfgap2 (ENSSAUG00010019616)	ENSSAUG00010019710	ENSSAUG00010019716	ENSSAUG00010019719	ENSSAUG00010019730
Perciformes	ANCESTRAL SPECIES	15	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00390000004417.b	ENSGT00940000163421.a.d.a	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00940000156431	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000166122	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565
Perciformes_a	ANCESTRAL SPECIES	55												ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00940000156431	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.f.a.d	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000153561.a
Channel bull blenny	MODERN SPECIES	17	GABARAPL2 (ENSCGOG00000007767)	ENSCGOG00000007766	ENSCGOG00000007763	rpl12 (ENSCGOG00000007669)	pole3 (ENSCGOG00000007661)	kmt5b (ENSCGOG00000007635)	ccnb2 (ENSCGOG00000007619)	kmt5b (ENSCGOG00000007614)	ccnb2 (ENSCGOG00000007613)	cd82a (ENSCGOG00000007609)	tspan18a (ENSCGOG00000007545)	ENSCGOG00000007543	HERC1 (ENSCGOG00000006815)	dapk2a (ENSCGOG00000006770)	ENSCGOG00000006769	rab11a (ENSCGOG00000006701) #22	ENSCGOG00000005992 ##24	dis3l (ENSCGOG00000005362) #25	tipin (ENSCGOG00000005347) #26	lctla (ENSCGOG00000005318) #31	crybgx (ENSCGOG00000005309)	ccnb2 (ENSCGOG00000005301)	cars1 (ENSCGOG00000003638)	pex16 (ENSCGOG00000003590)	arfgap2 (ENSCGOG00000003096)	ENSCGOG00000003070	KIF13B (ENSCGOG00000001573)	hmbox1a (ENSCGOG00000001525)	TDP1 (ENSCGOG00000001479)	eprs1 (ENSCGOG00000001039)	GLO1 (ENSCGOG00000001016)
Pike perch	MODERN SPECIES	42	ENSSLUG00000008994	nqo1 (ENSSLUG00000008999)	GABARAPL2 (ENSSLUG00000009005)	ENSSLUG00000009015	ENSSLUG00000009020	rpl12 (ENSSLUG00000009043)	pole3 (ENSSLUG00000009195)	kmt5b (ENSSLUG00000009197)	kmt5b (ENSSLUG00000009202)	ccnb2 (ENSSLUG00000009207)	cd82a (ENSSLUG00000009215)	TSPAN18 (ENSSLUG00000009223)	ENSSLUG00000009230	dapk2a (ENSSLUG00000009254)	ENSSLUG00000009257	rab11a (ENSSLUG00000009263) #22	ENSSLUG00000009292 ##24	dis3l (ENSSLUG00000009340) #25	tipin (ENSSLUG00000009385) #26	lctla (ENSSLUG00000009393) #31	crybgx (ENSSLUG00000009402)	ccnb2 (ENSSLUG00000009411)	cars1 (ENSSLUG00000009586)	pex16 (ENSSLUG00000014500)	arfgap2 (ENSSLUG00000014518)	ENSSLUG00000014557	ppfia1 (ENSSLUG00000014829)	CTTN (ENSSLUG00000020629)	SHANK2 (ENSSLUG00000020771)	ENSSLUG00000020774	ENSSLUG00000020780
Cottioidei	ANCESTRAL SPECIES	72														ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.h ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405.v	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000166122	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b
Lumpfish	MODERN SPECIES	18	ENSCLMG00005015114	ctrb.3 (ENSCLMG00005015112)	ENSCLMG00005015111	ENSCLMG00005015108	ENSCLMG00005015048	ENSCLMG00005015047	il17a/f1 (ENSCLMG00005015045)	STMN4 (ENSCLMG00005015043)	gpn1 (ENSCLMG00005014433)	BRSK2 (ENSCLMG00005014427)	ENSCLMG00005014425	large2 (ENSCLMG00005012736)	ENSCLMG00005012720	ENSCLMG00005012717	ENSCLMG00005012674	rab11a (ENSCLMG00005012660) #22	ENSCLMG00005012659	ENSCLMG00005012658	ENSCLMG00005012640 ##24	ENSCLMG00005012638	dis3l (ENSCLMG00005012152) #25	tipin (ENSCLMG00005012145) #26	ENSCLMG00005012144	lctla (ENSCLMG00005012029) #31	crybgx (ENSCLMG00005012024)	ENSCLMG00005012023	cars1 (ENSCLMG00005009487)	pex16 (ENSCLMG00005009449)	arfgap2 (ENSCLMG00005009444)	ENSCLMG00005009443	PPFIA1 (ENSCLMG00005004167)
Ovalentaria	ANCESTRAL SPECIES	17		ENSGT01030000235215	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT01060000249384	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00940000156618.c.b	ENSGT01030000234597.a.b.a.a	ENSGT00950000183172.C	ENSGT01030000234633.A.a.a	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000155405	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT01060000249384	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000153561.a
Oryzias	ANCESTRAL SPECIES	84														ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b
Oryzias_b	ANCESTRAL SPECIES	108				ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000165890	ENSGT00940000157369.b #31	ENSGT00390000005764 #26	ENSGT00530000063106.B #25	ENSGT00940000155333.A.a ##24	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22
Javanese ricefish	MODERN SPECIES	17	aph1b (ENSOJAG00000000118)	ENSOJAG00000000092	ENSOJAG00000000082	ENSOJAG00000007826	arfgap2 (ENSOJAG00000007620)	pex16 (ENSOJAG00000007521)	cars1 (ENSOJAG00000005475)	crybgx (ENSOJAG00000005363)	ENSOJAG00000005332	lctla (ENSOJAG00000005207) #31	tipin (ENSOJAG00000005185) #26	dis3l (ENSOJAG00000005138) #25	ENSOJAG00000004737 ##24	dapk2a (ENSOJAG00000004619)	ENSOJAG00000004573	rab11a (ENSOJAG00000004537) #22	ENSOJAG00000004444	BRSK2 (ENSOJAG00000004004)	rassf7b (ENSOJAG00000003851)	ENSOJAG00000003836	guca1g (ENSOJAG00000003824)	ENSOJAG00000003695	ENSOJAG00000003645	ENSOJAG00000003557	ENSOJAG00000003509	SHANK2 (ENSOJAG00000003489)	CTTN (ENSOJAG00000003344)	ppfia1 (ENSOJAG00000001530)	NR2E3 (ENSOJAG00000001358)	ENSOJAG00000001351	slc22a18 (ENSOJAG00000001340)
Indian medaka	MODERN SPECIES	433			ENSOMEG00000016452	ENSOMEG00000016513	arfgap2 (ENSOMEG00000016584)	pex16 (ENSOMEG00000016650)	cars1 (ENSOMEG00000016785)	crybgx (ENSOMEG00000016827)	lctla (ENSOMEG00000016867) #31	tipin (ENSOMEG00000016911) #26	dis3l (ENSOMEG00000016984) #25	ENSOMEG00000017014	ENSOMEG00000017328 ##24	dapk2a (ENSOMEG00000017417)	ENSOMEG00000017446	rab11a (ENSOMEG00000017467) #22	hypk (ENSOMEG00000017548)	mfap1 (ENSOMEG00000017526)	hddc3 (ENSOMEG00000017573)	vps33b (ENSOMEG00000017633)	prc1b (ENSOMEG00000017708)	ptpmt1 (ENSOMEG00000017744)	ndufs3 (ENSOMEG00000017795)	c1qtnf4 (ENSOMEG00000017829)
Oryzias_a	ANCESTRAL SPECIES	127															ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e
Chinese medaka	MODERN SPECIES	682															ENSOSIG00000006532	rab11a (ENSOSIG00000006287) #22
Japanese Medaka HdrR	MODERN SPECIES	17	ENSORLG00000018315	ENSORLG00000022411	ENSORLG00000029818	c1qtnf4 (ENSORLG00000029451)	ndufs3 (ENSORLG00000018322)	ENSORLG00000026511	ENSORLG00000027410	ENSORLG00000028005	vps33b (ENSORLG00000022688)	hddc3 (ENSORLG00000026752)	ENSORLG00000023471	ENSORLG00000023118	hypk (ENSORLG00000019968)	mfap1 (ENSORLG00000019973)	ENSORLG00000025680	RAB11A (ENSORLG00000018331) #22	ENSORLG00000026066	ENSORLG00000018346 ##24	ENSORLG00000023805	ENSORLG00000027380	ENSORLG00000026415	dis3l (ENSORLG00000018364) #25	tipin (ENSORLG00000018370) #26	lctla (ENSORLG00000030071) #31	crybgx (ENSORLG00000030061)	cars1 (ENSORLG00000022551)	pex16 (ENSORLG00000019603)	arfgap2 (ENSORLG00000019613)	ENSORLG00000019631	ENSORLG00000029986	ENSORLG00000000017
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT01030000234597.a.b.a.a	ENSGT00950000183172.C	ENSGT01030000234633.A.a.a	ENSGT01030000235215	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000155405	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT01060000249384	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000153561.a
Aplocheiloidei	ANCESTRAL SPECIES	349														ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24
Turquoise killifish	MODERN SPECIES	1616	BRSK2 (ENSNFUG00015001517)	DDX28 (ENSNFUG00015001670)	FBXO22 (ENSNFUG00015002515)	TMEM266 (ENSNFUG00015002528)	ISL2 (ENSNFUG00015002540)	pstpip1b (ENSNFUG00015002570)	TSPAN3B (ENSNFUG00015002579)	ENSNFUG00015002587	ENSNFUG00015002590	SEC11A (ENSNFUG00015002597)	ENSNFUG00015002601	ENSNFUG00015002604	CRY5 (ENSNFUG00015002611)	ENSNFUG00015002663	dapk2a (ENSNFUG00015002784)	RAB11A (ENSNFUG00015002802) #22	ENSNFUG00015002889 ##24	crybgx (ENSNFUG00015003091)	kmt5b (ENSNFUG00015003099)	POLE3 (ENSNFUG00015003116)	RPL12 (ENSNFUG00015003124)	ENSNFUG00015003149	GABARAPL2 (ENSNFUG00015003166)	NQO1 (ENSNFUG00015003197)	AGRP (ENSNFUG00015003602)	OLA.3677 (ENSNFUG00015003606)	ctrb.3 (ENSNFUG00015003607)	ENSNFUG00015003611	TPPP3 (ENSNFUG00015003778)	zdhhc1 (ENSNFUG00015003785)	HSD11B2 (ENSNFUG00015003798)
Mangrove rivulus	MODERN SPECIES	435														ENSKMAG00000011860	ENSKMAG00000011873	rab11a (ENSKMAG00000011905) #22	ENSKMAG00000011932 ##24
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT01030000234633.A.a.a	ENSGT00940000166375	ENSGT00940000159150	ENSGT00940000155010.a	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000155405	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT01060000249384	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b.d	ENSGT00940000166122	ENSGT00940000163723.A.f.b.c	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565
NAME_4	ANCESTRAL SPECIES	189	ENSGT00940000159150	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000155405	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000169428	ENSGT00940000171177	ENSGT00980000198667	ENSGT00940000177441	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e
Mummichog	MODERN SPECIES	2450			kmt5b (ENSFHEG00000020073)	ccnb2 (ENSFHEG00000020062)	cd82a (ENSFHEG00000020049)	TSPAN18 (ENSFHEG00000019916)	ENSFHEG00000019840	ENSFHEG00000019825	ENSFHEG00000019811	ENSFHEG00000019784	ENSFHEG00000019750	ENSFHEG00000019737	ENSFHEG00000019717	dapk2a (ENSFHEG00000019702)	ENSFHEG00000019681	rab11a (ENSFHEG00000019668) #22	ENSFHEG00000019649 ##24	ENSFHEG00000019580	nme6 (ENSFHEG00000019568)	eif2b4 (ENSFHEG00000019524)	atraid (ENSFHEG00000019507)	snx17 (ENSFHEG00000000828)	znf513a (ENSFHEG00000019421)	ENSFHEG00000019388	ENSFHEG00000019380	FNDC4 (ENSFHEG00000019374)	ENSFHEG00000019340	sox7 (ENSFHEG00000019081)	pinx1 (ENSFHEG00000019078)	tdh (ENSFHEG00000019067)	mtmr9 (ENSFHEG00000000490)
Sheepshead minnow	MODERN SPECIES	925															ENSCVAG00000013901	rab11a (ENSCVAG00000013878) #22	ENSCVAG00000013854 ##24	dis3l (ENSCVAG00000013781) #25	tipin (ENSCVAG00000013727) #26	lctla (ENSCVAG00000013711) #31	crybgx (ENSCVAG00000013661)	cars1 (ENSCVAG00000013626)	pex16 (ENSCVAG00000013551)	arfgap2 (ENSCVAG00000013526)	ENSCVAG00000013515	ENSCVAG00000013452
Poeciliinae	ANCESTRAL SPECIES	35	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT00940000155010.a	ENSGT00940000159150	ENSGT00940000166375	ENSGT00940000169428	ENSGT00940000171177	ENSGT00980000198667	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT01060000249384	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a.c	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b.d	ENSGT00940000166122	ENSGT00940000163723.A.f.b.c	ENSGT01050000244900.a.a.b.eb
Poecilia	ANCESTRAL SPECIES	4	ENSGT00940000157667.d	ENSGT00940000158481.d	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT00940000155010.a	ENSGT00940000159150	ENSGT00940000169428	ENSGT00940000171177	ENSGT00980000198667	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT01060000249384	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a.c	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b.d	ENSGT00940000166122	ENSGT00940000163723.A.f.b.c	ENSGT01050000244900.a.a.b.eb
NAME_6	ANCESTRAL SPECIES	157									ENSGT00940000169428	ENSGT00940000171177	ENSGT00980000198667	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT01060000249384	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a.c	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b.d	ENSGT00940000166122	ENSGT00940000163723.A.f.b.c	ENSGT01050000244900.a.a.b.eb
Amazon molly	MODERN SPECIES	966										ENSPFOG00000007728	ENSPFOG00000007736	HERC1 (ENSPFOG00000007797)	dapk2a (ENSPFOG00000009176)	ENSPFOG00000009268	ENSPFOG00000022646	rab11a (ENSPFOG00000009284) #22
Sailfin molly	MODERN SPECIES	2754																rab11a (ENSPLAG00000011175) #22	ENSPLAG00000011150 ##24
Guppy	MODERN SPECIES	5	KCNG4 (ENSPREG00000009312)	GABARAPL2 (ENSPREG00000009321)	nqo1 (ENSPREG00000009341)	ENSPREG00000009372	ENSPREG00000009407	ENSPREG00000009417	ENSPREG00000009422	ENSPREG00000009445	ENSPREG00000009498	ENSPREG00000009518	ENSPREG00000009539	ENSPREG00000009551	ENSPREG00000009570	ENSPREG00000009581	ENSPREG00000009589	rab11a (ENSPREG00000009605) #22	ENSPREG00000009612 ##24
Platyfish	MODERN SPECIES	18	nqo1 (ENSXMAG00000023962)	ENSXMAG00000022070	ENSXMAG00000022073	ENSXMAG00000026018	ENSXMAG00000021331	ENSXMAG00000023601	ENSXMAG00000028636	ENSXMAG00000030004	ENSXMAG00000025540	ENSXMAG00000028894	ENSXMAG00000020997	ENSXMAG00000026505	ENSXMAG00000023242	dapk2a (ENSXMAG00000009295)	ENSXMAG00000013562	rab11a (ENSXMAG00000023732) #22	ENSXMAG00000013593 ##24	ENSXMAG00000027597	ENSXMAG00000023497	dis3l (ENSXMAG00000013661) #25	tipin (ENSXMAG00000022558) #26	lctla (ENSXMAG00000013735) #31	crybgx (ENSXMAG00000013749)	ENSXMAG00000023882	ENSXMAG00000027162	guca1g (ENSXMAG00000013766)	ENSXMAG00000013779	ENSXMAG00000025723	SHANK2 (ENSXMAG00000013801)	CTTN (ENSXMAG00000013851)	ppfia1 (ENSXMAG00000013883)
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT00940000156618.c.b	ENSGT01030000234597.a.b.a.a	ENSGT00950000183172.C	ENSGT00940000166375	ENSGT00940000156563.a	ENSGT00940000155010.a	ENSGT00940000156938.e.e	ENSGT00390000006922	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.b	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b
Cichlidae	ANCESTRAL SPECIES	40									ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000157667.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000153561.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	28	ENSGT00390000000993	ENSGT00390000006876	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00920000150778	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.d.a ##24	ENSGT00940000155333.A.a.c ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000153561.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	32	ENSGT00390000000993	ENSGT00390000006876	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00920000150778	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.c ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000153561.a	ENSGT00730000111007.a.b
Haplochromini	ANCESTRAL SPECIES	34	ENSGT00390000000993	ENSGT00390000006876	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00920000150778	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.c ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000153561.a	ENSGT00730000111007.a.b
Burton s mouthbrooder	MODERN SPECIES	774											kmt5b (ENSHBUG00000003501)	cd82a (ENSHBUG00000003471)	HERC1 (ENSHBUG00000023749)	dapk2a (ENSHBUG00000023341)	ENSHBUG00000023101	rab11a (ENSHBUG00000023035) #22	ENSHBUG00000023021
Haplochromini_A	ANCESTRAL SPECIES	39	ENSGT00390000000993	ENSGT00390000006876	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00940000161051.a.a.b.b.b.a.c	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00920000150778	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.c ##24	ENSGT00530000063106.B #25	ENSGT00390000005764.r #26	ENSGT00940000157369.b #31	ENSGT00940000165890	ENSGT00940000155405	ENSGT00390000006347.a	ENSGT00390000017790	ENSGT00940000155568	ENSGT00940000163723.A.e	ENSGT01050000244900.a.a.b.eb	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000153561.a	ENSGT00730000111007.a.b
P. nyererei	MODERN SPECIES	419	CEMIP (ENSPNYG00000002991)	mesd (ENSPNYG00000002968)	ENSPNYG00000002961	ENSPNYG00000002952	ankdd1a (ENSPNYG00000002920)	npsn (ENSPNYG00000002893)	ENSPNYG00000002876	STARD5 (ENSPNYG00000002841)	TMC3 (ENSPNYG00000002766)	pole3 (ENSPNYG00000002742)	kmt5b (ENSPNYG00000002728)	cd82a (ENSPNYG00000002621)	HERC1 (ENSPNYG00000002320)	dapk2a (ENSPNYG00000002301)	ENSPNYG00000002271	rab11a (ENSPNYG00000002252) #22	ENSPNYG00000002240	ENSPNYG00000002097 ##24	dis3l (ENSPNYG00000002066) #25	tipin (ENSPNYG00000001987) #26
Haplochromini_B	ANCESTRAL SPECIES	77	ENSGT00390000006876	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00940000161051.a.a.b.b.b.a.d	ENSGT00940000161051.a.a.b.b.b.a.c	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00920000150778	ENSGT00940000164386	ENSGT00940000156431	ENSGT00940000158481.d	ENSGT00940000155907.b.b	ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a.c ##24	ENSGT00530000063106.B #25	ENSGT00390000005764.r #26
Zebra mbuna	MODERN SPECIES	1091	crybgx (ENSMZEG00005016862)	lctla (ENSMZEG00005016870) #31	npsn (ENSMZEG00005016894)	ENSMZEG00005016898	STARD5 (ENSMZEG00005016903)	ENSMZEG00005016917	ENSMZEG00005016921	pole3 (ENSMZEG00005016930)	kmt5b (ENSMZEG00005016943)	cd82a (ENSMZEG00005016958)	HERC1 (ENSMZEG00005016974)	ENSMZEG00005017030	ENSMZEG00005017035	dapk2a (ENSMZEG00005017043)	ENSMZEG00005017054	rab11a (ENSMZEG00005017063) #22	ENSMZEG00005017073 ##24	ENSMZEG00005017084	dis3l (ENSMZEG00005017095) #25	tipin (ENSMZEG00005017116) #26	ankdd1a (ENSMZEG00005017129)	ENSMZEG00005017139	ENSMZEG00005017154	mesd (ENSMZEG00005017158)	CEMIP (ENSMZEG00005017171)	ENSMZEG00005017192	abhd17c (ENSMZEG00005017197)	zgc:153993 (ENSMZEG00005017204)	fgf19 (ENSMZEG00005017208)	fgf4 (ENSMZEG00005017215)	fgf3 (ENSMZEG00005017222)
Eastern happy	MODERN SPECIES		mesd (ENSACLG00000000378)	ENSACLG00000000415	ENSACLG00000000420	ankdd1a (ENSACLG00000000553)	npsn (ENSACLG00000000590)	ENSACLG00000001012	ENSACLG00000001020	STARD5 (ENSACLG00000001028)	TMC3 (ENSACLG00000001076)	pole3 (ENSACLG00000001171)	kmt5b (ENSACLG00000001197)	cd82a (ENSACLG00000001316)	HERC1 (ENSACLG00000001328)	dapk2a (ENSACLG00000001586)	ENSACLG00000001756	rab11a (ENSACLG00000001775) #22	ENSACLG00000001812 ##24	ENSACLG00000001862	ENSACLG00000001865	lctla (ENSACLG00000001883) #31	crybgx (ENSACLG00000001945)	ccnb2 (ENSACLG00000001980)	cars1 (ENSACLG00000001993)	pex16 (ENSACLG00000002118)	arfgap2 (ENSACLG00000002202)	ENSACLG00000002271	ppfia1 (ENSACLG00000002291)	CTTN (ENSACLG00000002506)	SHANK2 (ENSACLG00000002556)	ENSACLG00000002570	ENSACLG00000002620
Lyretail cichlid	MODERN SPECIES	501			ENSNBRG00000012490	STARD5 (ENSNBRG00000012527)	ENSNBRG00000012535	ENSNBRG00000012558	pole3 (ENSNBRG00000012570)	kmt5b (ENSNBRG00000012592)	cd82a (ENSNBRG00000012620)	ENSNBRG00000012770	ENSNBRG00000012817	ENSNBRG00000012828	ENSNBRG00000012844	ENSNBRG00000012855	ENSNBRG00000012876	rab11a (ENSNBRG00000012893) #22	ENSNBRG00000012912 ##24	ENSNBRG00000012960	dis3l (ENSNBRG00000012970) #25
Nile tilapia	MODERN SPECIES		ENSONIG00000032648	ENSONIG00000037983	ENSONIG00000038449	ankdd1a (ENSONIG00000015036)	ENSONIG00000015038	ENSONIG00000015044	STARD5 (ENSONIG00000015047)	TMC3 (ENSONIG00000015050)	pole3 (ENSONIG00000033969)	kmt5b (ENSONIG00000015056)	cd82a (ENSONIG00000015057)	ENSONIG00000028743	HERC1 (ENSONIG00000015060)	dapk2a (ENSONIG00000015069)	ENSONIG00000028146	rab11a (ENSONIG00000015072) #22	ENSONIG00000015074 ##24	ENSONIG00000035471	htatip2 (ENSONIG00000007145)	prmt3 (ENSONIG00000007146)	slc6a5 (ENSONIG00000007148)	ENSONIG00000032200	NELL1 (ENSONIG00000007149)	ENSONIG00000029700	ENSONIG00000040626	lrp4 (ENSONIG00000007159)	A3GALT2 (ENSONIG00000030923)	ENSONIG00000028501	ENSONIG00000007167	A3GALT2 (ENSONIG00000039361)	A3GALT2 (ENSONIG00000028598)
Midas cichlid	MODERN SPECIES	844	rasl12 (ENSACIG00000002516)	KBTBD13 (ENSACIG00000002547)	pdcd7 (ENSACIG00000002556) #8	ENSACIG00000002605	cars1 (ENSACIG00000002614)	crybgx (ENSACIG00000002669)	lctla (ENSACIG00000002686) #31	pole3 (ENSACIG00000002711)	kmt5b (ENSACIG00000002725)	ccnb2 (ENSACIG00000002751)	cd82a (ENSACIG00000002769)	tspan18a (ENSACIG00000002818)	HERC1 (ENSACIG00000002866)	dapk2a (ENSACIG00000003048)	ENSACIG00000003069	rab11a (ENSACIG00000003092) #22	ENSACIG00000003103 ##24	dis3l (ENSACIG00000003161) #25	tipin (ENSACIG00000003205) #26	TMC3 (ENSACIG00000003243)	ENSACIG00000003308
Pomacentridae	ANCESTRAL SPECIES	15														ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00390000017361	ENSGT00940000160434	ENSGT00950000183151.a.a.a	ENSGT00390000013319	ENSGT00390000018587.e	ENSGT00940000157760.g.a	ENSGT00940000162248	ENSGT00940000158152.b	ENSGT00940000156586	ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b.e
Pomacentridae_A	ANCESTRAL SPECIES	66														ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00390000017361	ENSGT00940000160434	ENSGT00950000183151.a.a.a	ENSGT00390000013319	ENSGT00390000018587.e	ENSGT00940000157760.g.a	ENSGT00940000162248	ENSGT00940000158152.b	ENSGT00940000156586	ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b.e
Amphiprion	ANCESTRAL SPECIES	292														ENSGT00940000153424.a.a.c.a.b	ENSGT00940000160977.e.a	ENSGT00940000154914 #22	ENSGT00940000155333.A.a ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000158745.o.b
Clown anemonefish	MODERN SPECIES	792											ENSAOCG00000019998	dapk2a (ENSAOCG00000020035)	ENSAOCG00000020045	ENSAOCG00000001483	ENSAOCG00000020081	rab11a (ENSAOCG00000020106) #22	ENSAOCG00000002463 ##24
Orange clownfish	MODERN SPECIES		taldo1 (ENSAPEG00000000090)	taldo1 (ENSAPEG00000000089)	ENSAPEG00000000088	ENSAPEG00000000087	ENSAPEG00000000086	ENSAPEG00000000085	ENSAPEG00000000084	ENSAPEG00000000083	ENSAPEG00000000082	ENSAPEG00000000081	ENSAPEG00000000080	dapk2a (ENSAPEG00000000079)	ENSAPEG00000000078	ENSAPEG00000000077	ENSAPEG00000000076	rab11a (ENSAPEG00000000075) #22	ENSAPEG00000000074	ENSAPEG00000000073 ##24	dis3l (ENSAPEG00000000072) #25	tipin (ENSAPEG00000000071) #26	egln3 (ENSAPEG00000000070)	ENSAPEG00000000069	ENSAPEG00000000068	gpn1 (ENSAPEG00000000067)	STMN4 (ENSAPEG00000000066)	il17a/f1 (ENSAPEG00000000065)	ENSAPEG00000000064	tspan18a (ENSAPEG00000000063)	ENSAPEG00000000062	cd82a (ENSAPEG00000000061)	kmt5b (ENSAPEG00000000060)
Spiny chromis	MODERN SPECIES	1979														ENSAPOG00000018291	ENSAPOG00000018270	rab11a (ENSAPOG00000018256) #22	ENSAPOG00000018230 ##24
Bicolor damselfish	MODERN SPECIES	1112													ENSSPAG00000019321	dapk2a (ENSSPAG00000019342)	ENSSPAG00000019371	rab11a (ENSSPAG00000019393) #22	ENSSPAG00000019412 ##24	dis3l (ENSSPAG00000019455) #25	tipin (ENSSPAG00000019500) #26	taldo1 (ENSSPAG00000019511)
Osteoglossiformes	ANCESTRAL SPECIES	37	ENSGT00940000156573	ENSGT00940000157691.c	ENSGT00940000155405.db	ENSGT00940000157461.a.a	ENSGT00940000156900.t	ENSGT00940000158943.e.a.a	ENSGT00390000008240.c	ENSGT00940000163963.a	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A.sb	ENSGT00530000063675.a.n	ENSGT01040000240503.A.a.a.e	ENSGT00390000018400.a	ENSGT00940000154914 #22	ENSGT00940000155333.A ##24	ENSGT00530000063106.B #25	ENSGT00390000005764 #26	ENSGT00940000153487.b.b #27	ENSGT00390000018145 #29	ENSGT00940000157369 #31	ENSGT00940000165890	ENSGT00940000158146 #32	ENSGT00940000153499.b.b.d #33	ENSGT00390000007218 #34	ENSGT00390000015942	ENSGT00940000157505	ENSGT00940000158440	ENSGT01030000234539.a.a.b.a.b	ENSGT00950000182965.a.a
Asian bonytongue	MODERN SPECIES	2	rnf111 (ENSSFOG00015024085)	ccnb2 (ENSSFOG00015024081)	MYO1E (ENSSFOG00015024079)	MTMR10 (ENSSFOG00015024077)	APBA2 (ENSSFOG00015024075)	ENSSFOG00015024073	ENSSFOG00015024069	sord (ENSSFOG00015024067)	terb2 (ENSSFOG00015024060)	TJP1 (ENSSFOG00015024056)	ENSSFOG00015027780	ENSSFOG00015024053	GOLM2 (ENSSFOG00015032150)	ENSSFOG00015024048	eif3ja (ENSSFOG00015026344)	rab11a (ENSSFOG00015024042) #22	ENSSFOG00015024039 ##24	dis3l (ENSSFOG00015024038) #25	tipin (ENSSFOG00015024037) #26	map2k1 (ENSSFOG00015024032) #27	rpl4 (ENSSFOG00015024033) #29	ENSSFOG00015026128	CDH8 (ENSSFOG00015016862)	ENSSFOG00015027741	cdh11 (ENSSFOG00015016799)	cdh5 (ENSSFOG00015016780)	ENSSFOG00015024697	ENSSFOG00015016749	tk2 (ENSSFOG00015031790)	CKLF (ENSSFOG00015025019)	cmtm3 (ENSSFOG00015016707)
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	125	FHOD1 (ENSPKIG00000006707)	NFATC3 (ENSPKIG00000006823)	sema7a (ENSPKIG00000006875)	commd4 (ENSPKIG00000006908)	neil1 (ENSPKIG00000006962)	MAN2C1 (ENSPKIG00000007096)	ENSPKIG00000007299	si:dkeyp-73b11.8 (ENSPKIG00000007339)	fbxl22 (ENSPKIG00000007359)	ENSPKIG00000007383	ENSPKIG00000007400	cib2 (ENSPKIG00000007412)	ARIH1 (ENSPKIG00000007448)	ENSPKIG00000007522	ppcdc (ENSPKIG00000007573)	rab11a (ENSPKIG00000007606) #22	zwilch (ENSPKIG00000007647) #30	SNAPC5 (ENSPKIG00000007703) #28	rps27l (ENSPKIG00000007763)	DNAJA4 (ENSPKIG00000007728)	ENSPKIG00000007787	OTUD7A (ENSPKIG00000007844)	ENSPKIG00000007970	ENSPKIG00000007985	ENSPKIG00000008004	bnip2 (ENSPKIG00000008039)	foxb1a (ENSPKIG00000008092)	ANXA2 (ENSPKIG00000008129)	roraa (ENSPKIG00000008173)	c2cd4a (ENSPKIG00000008197)	tpma (ENSPKIG00000008251)
P. kingsleyae	MODERN SPECIES	146											ENTREP2 (ENSPKIG00000014858)	GOLM2 (ENSPKIG00000014876)	CTDSPL2 (ENSPKIG00000014916)	ENSPKIG00000014991	EIF3J (ENSPKIG00000015047)	RAB11A (ENSPKIG00000015102) #22	ENSPKIG00000015215 ##24	ENSPKIG00000015455	dis3l (ENSPKIG00000015490) #25	ENSPKIG00000015547	tipin (ENSPKIG00000015565) #26	map2k1 (ENSPKIG00000015608) #27	rpl4 (ENSPKIG00000015644) #29	lctla (ENSPKIG00000015716) #31	smad6a (ENSPKIG00000015767) #32	smad3b (ENSPKIG00000015799) #33	aagab (ENSPKIG00000015838) #34	zgc:162898 (ENSPKIG00000015892)	map2k5 (ENSPKIG00000015970)	ENSPKIG00000016124	skor1a (ENSPKIG00000016152)
Elephant shark	MODERN SPECIES	1490	SPPL2A (ENSCMIG00000018858)	trpm7 (ENSCMIG00000018835)	USP50 (ENSCMIG00000018807)	USP8 (ENSCMIG00000018799)	gabpb1 (ENSCMIG00000018784)	zgc:158482 (ENSCMIG00000018766)	gatm (ENSCMIG00000018754)	pde8a (ENSCMIG00000018732)	ENSCMIG00000018718	ENSCMIG00000018715	HOMER2 (ENSCMIG00000018710)	hacd3 (ENSCMIG00000018702) #15	ints14 (ENSCMIG00000018688) #16	SLC24A1 (ENSCMIG00000018682) #17	dennd4a (ENSCMIG00000018666) #21	rab11a (ENSCMIG00000018649) #22	MEGF11 (ENSCMIG00000018640) #24	dis3l (ENSCMIG00000018578) #25	tipin (ENSCMIG00000018527) #26	map2k1 (ENSCMIG00000018523) #27	zwilch (ENSCMIG00000018499) #30	rpl4 (ENSCMIG00000018485) #29	lctla (ENSCMIG00000018484) #31	crybgx (ENSCMIG00000018479)	ENSCMIG00000018477 #28	si:ch211-107o10.3 (ENSCMIG00000018476)	ENSCMIG00000018474	RASGRF1 (ENSCMIG00000018392)	ctsh (ENSCMIG00000018300)	ENSCMIG00000018282	BLM (ENSCMIG00000018273)