Euarchontoglires_A	ANCESTRAL SPECIES	24	ENSGT00950000182993.A.a #7	ENSGT00550000075134 #8	ENSGT00390000016128 #9	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00940000162487 #12	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Glires	ANCESTRAL SPECIES	25	ENSGT00950000182993.A.a #7	ENSGT00550000075134 #8	ENSGT00390000016128 #9	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00940000162487 #12	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Rodentia	ANCESTRAL SPECIES	17	ENSGT00550000075134 #8	ENSGT00390000016128 #9	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00940000162487 #12	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00550000075134 #8	ENSGT00390000016128 #9	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00940000162487 #12	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00950000182993.A.a #7	ENSGT00550000075134 #8	ENSGT00390000016128 #9	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00940000162487 #12	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Eurasian red squirrel	MODERN SPECIES	7	NRTN (ENSSVLG00005021968) #7	DUS3L (ENSSVLG00005021792) #8	PRR22 (ENSSVLG00005021755) #9	LONP1 (ENSSVLG00005021189) #10	ENSSVLG00005021082 #11	HSD11B1L (ENSSVLG00005020980) #12	MICOS13 (ENSSVLG00005020922) #13	SAFB (ENSSVLG00005020852) #14	SAFB2 (ENSSVLG00005020804) #15	ENSSVLG00005020769 #16	ENSSVLG00005020738 #17	PTPRS (ENSSVLG00005020607) #18	KDM4B (ENSSVLG00005020468) #19	UHRF1 (ENSSVLG00005020117) #20	ARRDC5 (ENSSVLG00005019968) #21	PLIN3 (ENSSVLG00005019930) #22	TICAM1 (ENSSVLG00005019910) #23	FEM1A (ENSSVLG00005019898) #24	DPP9 (ENSSVLG00005019665) #25	MYDGF (ENSSVLG00005019396) #26	TNFAIP8L1 (ENSSVLG00005019332) #27	SEMA6B (ENSSVLG00005019159) #28	LRG1 (ENSSVLG00005019035) #29	PLIN5 (ENSSVLG00005018954) #30	PLIN4 (ENSSVLG00005018704) #31	HDGFL2 (ENSSVLG00005018647) #32	UBXN6 (ENSSVLG00005018509) #33	CHAF1A (ENSSVLG00005018270) #34	SH3GL1 (ENSSVLG00005018172) #35	MPND (ENSSVLG00005017709) #36	ENSSVLG00005017600 #37
Marmotini	ANCESTRAL SPECIES	24	ENSGT00950000182993.A.a #7	ENSGT00550000075134 #8	ENSGT00390000016128 #9	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00940000162487 #12	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00950000182993.A.a #7	ENSGT00550000075134 #8	ENSGT00390000016128 #9	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00940000162487 #12	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Arctic ground squirrel	MODERN SPECIES	301	NRTN (ENSUPAG00010023641) #7	DUS3L (ENSUPAG00010023640) #8	PRR22 (ENSUPAG00010023639) #9	LONP1 (ENSUPAG00010023636) #10	RPL36 (ENSUPAG00010023635) ##11	HSD11B1L (ENSUPAG00010023634) #12	MICOS13 (ENSUPAG00010023633) #13	SAFB (ENSUPAG00010023630) #14	SAFB2 (ENSUPAG00010023625) #15	ENSUPAG00010023624 #16	ZNRF4 (ENSUPAG00010023622) #17	PTPRS (ENSUPAG00010010260) #18	KDM4B (ENSUPAG00010010101) #19	UHRF1 (ENSUPAG00010010060) #20	ENSUPAG00010010053 #21	PLIN3 (ENSUPAG00010010038) #22	TICAM1 (ENSUPAG00010010031) #23	FEM1A (ENSUPAG00010010026) #24	DPP9 (ENSUPAG00010009974) #25	MYDGF (ENSUPAG00010009956) #26	TNFAIP8L1 (ENSUPAG00010009951) #27	SEMA6B (ENSUPAG00010009930) #28	LRG1 (ENSUPAG00010009927) #29	PLIN5 (ENSUPAG00010009919) #30	ENSUPAG00010009913 #31	HDGFL2 (ENSUPAG00010009901) #32	UBXN6 (ENSUPAG00010009881) #33	CHAF1A (ENSUPAG00010009868) #34	SH3GL1 (ENSUPAG00010009851) #35	MPND (ENSUPAG00010009625) #36	STAP2 (ENSUPAG00010009594)
Squirrel	MODERN SPECIES	188	NRTN (ENSSTOG00000009542) #7	DUS3L (ENSSTOG00000025017) #8	PRR22 (ENSSTOG00000025571) #9	LONP1 (ENSSTOG00000019884) #10	ENSSTOG00000020518 ##11	HSD11B1L (ENSSTOG00000027416) #12	MICOS13 (ENSSTOG00000002814) #13	SAFB (ENSSTOG00000002783) #14	ENSSTOG00000002758 #15	ENSSTOG00000029515 #16	ZNRF4 (ENSSTOG00000022733) #17	PTPRS (ENSSTOG00000028354) #18	KDM4B (ENSSTOG00000022348) #19	UHRF1 (ENSSTOG00000025553) #20	ARRDC5 (ENSSTOG00000027289) #21	PLIN3 (ENSSTOG00000027863) #22	FEM1A (ENSSTOG00000002965) #24	DPP9 (ENSSTOG00000009879) #25	MYDGF (ENSSTOG00000009868) #26	TNFAIP8L1 (ENSSTOG00000009863) #27	SEMA6B (ENSSTOG00000021893) #28	LRG1 (ENSSTOG00000003007) #29	PLIN5 (ENSSTOG00000022250) #30	ENSSTOG00000030331	HDGFL2 (ENSSTOG00000007383) #32	UBXN6 (ENSSTOG00000014906) #33	CHAF1A (ENSSTOG00000014889) #34	SH3GL1 (ENSSTOG00000008579) #35	MPND (ENSSTOG00000008666) #36	STAP2 (ENSSTOG00000022594)	FSD1 (ENSSTOG00000008010)
Alpin marmot	MODERN SPECIES	88	CAPS (ENSMMMG00000019062)	VMAC (ENSMMMG00000019061)	NDUFA11 (ENSMMMG00000019059)	NRTN (ENSMMMG00000019052) #7	DUS3L (ENSMMMG00000019016) #8	LONP1 (ENSMMMG00000018859) #10	HSD11B1L (ENSMMMG00000018842) #12	MICOS13 (ENSMMMG00000018836) #13	SAFB (ENSMMMG00000018807) #14	SAFB2 (ENSMMMG00000018701) #15	ENSMMMG00000018676 #18	ENSMMMG00000018660 #18	KDM4B (ENSMMMG00000018611) #19	UHRF1 (ENSMMMG00000018568) #20	ENSMMMG00000018563 #21	PLIN3 (ENSMMMG00000018498) #22	FEM1A (ENSMMMG00000018489) #24	DPP9 (ENSMMMG00000018462) #25	MYDGF (ENSMMMG00000018460) #26	ENSMMMG00000018426 #28	LRG1 (ENSMMMG00000018424) #29	ENSMMMG00000018410 #30	HDGFL2 (ENSMMMG00000018325) #32	UBXN6 (ENSMMMG00000018303) #33	CHAF1A (ENSMMMG00000018263) #34	SH3GL1 (ENSMMMG00000018246) #35	MPND (ENSMMMG00000018208) #36	STAP2 (ENSMMMG00000018200)	FSD1 (ENSMMMG00000018181)	SHD (ENSMMMG00000018157)	YJU2 (ENSMMMG00000018139)
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00950000182993.A.a #7	ENSGT00550000075134 #8	ENSGT00390000016128 #9	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Naked mole-rat female	MODERN SPECIES	21	NRTN (ENSHGLG00000014364) #7	DUS3L (ENSHGLG00000013475) #8	PRR22 (ENSHGLG00000043073) #9	CATSPERD (ENSHGLG00000032633)	LONP1 (ENSHGLG00000013886) #10	ENSHGLG00000013869 ##11	MICOS13 (ENSHGLG00000032110) #13	ENSHGLG00000015883 #14	SAFB2 (ENSHGLG00000017442) #15	ENSHGLG00000044379	ENSHGLG00000017464 #16	ENSHGLG00000037010 #17	KDM4B (ENSHGLG00000013802) #19	UHRF1 (ENSHGLG00000015739) #20	ARRDC5 (ENSHGLG00000014076) #21	PLIN3 (ENSHGLG00000050405) #22	FEM1A (ENSHGLG00000041190) #24	DPP9 (ENSHGLG00000006649) #25	MYDGF (ENSHGLG00000006727) #26	TNFAIP8L1 (ENSHGLG00000040405) #27	SEMA6B (ENSHGLG00000008078) #28	LRG1 (ENSHGLG00000008746) #29	PLIN5 (ENSHGLG00000009083) #30	PLIN4 (ENSHGLG00000035695) #31	HDGFL2 (ENSHGLG00000010821) #32	UBXN6 (ENSHGLG00000011971) #33	ENSHGLG00000035324	CHAF1A (ENSHGLG00000005439) #34	SH3GL1 (ENSHGLG00000005623) #35	MPND (ENSHGLG00000006669) #36	STAP2 (ENSHGLG00000008727)
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000163125	ENSGT00950000182993.A.a #7	ENSGT00550000075134 #8	ENSGT00390000016128 #9	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Guinea pig	MODERN SPECIES	266									LONP1 (ENSCPOG00000022470) #10	RPL36 (ENSCPOG00000022839) ##11	MICOS13 (ENSCPOG00000019813) #13	SAFB (ENSCPOG00000026322) #14	SAFB2 (ENSCPOG00000011394) #15	UHRF1 (ENSCPOG00000013885) #20	ARRDC5 (ENSCPOG00000019363) #21	PLIN3 (ENSCPOG00000035732) #22	TICAM1 (ENSCPOG00000006486) #23	FEM1A (ENSCPOG00000002697) #24	DPP9 (ENSCPOG00000023894) #25
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00390000012434	ENSGT00950000182993.A.a #7	ENSGT00550000075134 #8	ENSGT00390000016128 #9	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Long-tailed chinchilla	MODERN SPECIES	202	CAPS (ENSCLAG00000013758)	VMAC (ENSCLAG00000012168)	NDUFA11 (ENSCLAG00000008043)	DUS3L (ENSCLAG00000008470) #8	PRR22 (ENSCLAG00000009039) #9	LONP1 (ENSCLAG00000007239) #10	RPL36 (ENSCLAG00000012455) ##11	MICOS13 (ENSCLAG00000009496) #13	SAFB (ENSCLAG00000007734) #14	ENSCLAG00000009742 #15	ENSCLAG00000007870 #16	ENSCLAG00000008007 #17	PTPRS (ENSCLAG00000006868) #18	KDM4B (ENSCLAG00000007020) #19	ARRDC5 (ENSCLAG00000006231) #21	PLIN3 (ENSCLAG00000006302) #22	TICAM1 (ENSCLAG00000017975) #23	FEM1A (ENSCLAG00000006945) #24	DPP9 (ENSCLAG00000008590) #25	MYDGF (ENSCLAG00000016185) #26	TNFAIP8L1 (ENSCLAG00000009190) #27	SEMA6B (ENSCLAG00000009399) #28	LRG1 (ENSCLAG00000011801) #29	PLIN5 (ENSCLAG00000015835) #30	HDGFL2 (ENSCLAG00000008598) #32	UBXN6 (ENSCLAG00000010885) #33	CHAF1A (ENSCLAG00000008702) #34	SH3GL1 (ENSCLAG00000006871) #35	MPND (ENSCLAG00000007417) #36	STAP2 (ENSCLAG00000008850)	FSD1 (ENSCLAG00000013151)
Degu	MODERN SPECIES	91	VMAC (ENSODEG00000014819)	NDUFA11 (ENSODEG00000015123)	NRTN (ENSODEG00000014997) #7	DUS3L (ENSODEG00000015771) #8	PRR22 (ENSODEG00000015287) #9	LONP1 (ENSODEG00000015069) #10	ENSODEG00000017182 ##11	MICOS13 (ENSODEG00000016327) #13	SAFB (ENSODEG00000014838) #14	SAFB2 (ENSODEG00000014751) #15	ENSODEG00000015112 #17	PTPRS (ENSODEG00000015678) #18	KDM4B (ENSODEG00000014383) #19	UHRF1 (ENSODEG00000015557) #20	ARRDC5 (ENSODEG00000014652) #21	PLIN3 (ENSODEG00000014389) #22	TICAM1 (ENSODEG00000014706) #23	FEM1A (ENSODEG00000014717) #24	ENSODEG00000014241	DPP9 (ENSODEG00000014408) #25	MYDGF (ENSODEG00000014093) #26	TNFAIP8L1 (ENSODEG00000020424) #27	SEMA6B (ENSODEG00000016032) #28	PLIN5 (ENSODEG00000014740) #30	PLIN4 (ENSODEG00000015715) #31	ENSODEG00000015495 #32	UBXN6 (ENSODEG00000015912) #33	CHAF1A (ENSODEG00000015861) #34	SH3GL1 (ENSODEG00000015344) #35	MPND (ENSODEG00000014317) #36	STAP2 (ENSODEG00000015068)
Rodentia_B	ANCESTRAL SPECIES	28	ENSGT00550000075134 #8	ENSGT00390000016128 #9	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00940000162487 #12	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Myomorpha	ANCESTRAL SPECIES	27	ENSGT00940000162442	ENSGT00940000158588	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00940000162487 #12	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Muroidea	ANCESTRAL SPECIES	32	ENSGT00940000162442	ENSGT00940000158588	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00940000162487 #12	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Muroidea_A	ANCESTRAL SPECIES	25	ENSGT00390000007212	ENSGT00940000162442	ENSGT00940000158588	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Cricetidae	ANCESTRAL SPECIES	25	ENSGT00390000007212	ENSGT00940000162442	ENSGT00940000158588	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000007212	ENSGT00940000162442	ENSGT00940000158588	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Golden Hamster	MODERN SPECIES	730	Nrtn (ENSMAUG00000001043) #7	Ndufa11 (ENSMAUG00000021572)	Vmac (ENSMAUG00000009455)	ENSMAUG00000013827	Ranbp3 (ENSMAUG00000011228)	Catsperd (ENSMAUG00000009178)	Lonp1 (ENSMAUG00000013293) #10	ENSMAUG00000018691 ##11	Safb2 (ENSMAUG00000011573) #15	Tincr (ENSMAUG00000006706) #16	Znrf4 (ENSMAUG00000008614) #17	Ptprs (ENSMAUG00000003364) #18	Kdm4b (ENSMAUG00000022140) #19	Uhrf1 (ENSMAUG00000021640) #20	Arrdc5 (ENSMAUG00000019305) #21	Plin3 (ENSMAUG00000013422) #22	ENSMAUG00000008605 #24	Dpp9 (ENSMAUG00000018726) #25	Mydgf (ENSMAUG00000018887) #26	Tnfaip8l1 (ENSMAUG00000010017) #27	Sema6b (ENSMAUG00000008147) #28	Lrg1 (ENSMAUG00000013924) #29	Plin5 (ENSMAUG00000021120) #30	ENSMAUG00000002748 #32	Ubxn6 (ENSMAUG00000009388) #33	Chaf1a (ENSMAUG00000011198) #34	Sh3gl1 (ENSMAUG00000010873) #35	Mpnd (ENSMAUG00000021460) #36	Stap2 (ENSMAUG00000008549)	Fsd1 (ENSMAUG00000014625)	Shd (ENSMAUG00000015964)
Chinese hamster chok1gshd	MODERN SPECIES	2	Vmac (ENSCGRG00001023793)	ENSCGRG00001021756	Ranbp3 (ENSCGRG00001022677)	Catsperd (ENSCGRG00001010087)	Lonp1 (ENSCGRG00001021835) #10	ENSCGRG00001020793 ##11	Safb (ENSCGRG00001002254) #14	Micos13 (ENSCGRG00001016715) #13	Safb2 (ENSCGRG00001015833) #15	Tincr (ENSCGRG00001024474) #16	Znrf4 (ENSCGRG00001009066) #17	Ptprs (ENSCGRG00001023963) #18	Kdm4b (ENSCGRG00001010495) #19	Uhrf1 (ENSCGRG00001012088) #20	Arrdc5 (ENSCGRG00001020830) #21	Plin3 (ENSCGRG00001021231) #22	Ticam1 (ENSCGRG00001005336) #23	ENSCGRG00001010179 #24	Dpp9 (ENSCGRG00001020770) #25	Mydgf (ENSCGRG00001021243) #26	Tnfaip8l1 (ENSCGRG00001008281) #27	Sema6b (ENSCGRG00001023299) #28	Lrg1 (ENSCGRG00001024126) #29	Plin5 (ENSCGRG00001006081) #30	Plin4 (ENSCGRG00001009471) #31	Hdgfl2 (ENSCGRG00001012579) #32	Ubxn6 (ENSCGRG00001016075) #33	Chaf1a (ENSCGRG00001022507) #34	Sh3gl1 (ENSCGRG00001023427) #35	Mpnd (ENSCGRG00001015203) #36	Stap2 (ENSCGRG00001004912)
Cricetidae_B	ANCESTRAL SPECIES	27	ENSGT00390000007212	ENSGT00940000162442	ENSGT00940000158588	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.a.a.b ##11	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b	ENSGT00940000159440
Prairie vole	MODERN SPECIES	9	Ptpn5 (ENSMOCG00000002109)	ENSMOCG00000020275	Mrgprx1 (ENSMOCG00000021193)	ENSMOCG00000009273	ENSMOCG00000000883	ENSMOCG00000012949	ENSMOCG00000017120	ENSMOCG00000000184	ENSMOCG00000001550	Svip (ENSMOCG00000012616)	Gas2 (ENSMOCG00000013131)	Fancf (ENSMOCG00000013896)	Slc17a6 (ENSMOCG00000020959)	Ano5 (ENSMOCG00000017702)	Arrdc5 (ENSMOCG00000019187) #21	Plin3 (ENSMOCG00000000153) #22	Ticam1 (ENSMOCG00000001352) #23	ENSMOCG00000001639 #24	Dpp9 (ENSMOCG00000014863) #25	Mydgf (ENSMOCG00000004213) #26	Tnfaip8l1 (ENSMOCG00000009632) #27	Sema6b (ENSMOCG00000011179) #28	Lrg1 (ENSMOCG00000017018) #29	Plin5 (ENSMOCG00000021153) #30	Hdgfl2 (ENSMOCG00000020415) #32	Ubxn6 (ENSMOCG00000013954) #33	Chaf1a (ENSMOCG00000020238) #34	ENSMOCG00000020338 #35	Mpnd (ENSMOCG00000017152) #36	Stap2 (ENSMOCG00000022151)	Fsd1 (ENSMOCG00000014990)
Northern American deer mouse	MODERN SPECIES	14	Ndufa11 (ENSPEMG00000020648)	ENSPEMG00000026816	ENSPEMG00000020906	Ranbp3 (ENSPEMG00000020448)	Lonp1 (ENSPEMG00000020753) #10	ENSPEMG00000014036 ##11	Micos13 (ENSPEMG00000009993) #13	Safb (ENSPEMG00000020428) #14	Safb2 (ENSPEMG00000016015) #15	Tincr (ENSPEMG00000023023) #16	Znrf4 (ENSPEMG00000006665) #17	Ptprs (ENSPEMG00000020799) #18	Kdm4b (ENSPEMG00000021576) #19	Uhrf1 (ENSPEMG00000016633) #20	ENSPEMG00000025270 #21	Plin3 (ENSPEMG00000022494) #22	Ticam1 (ENSPEMG00000026452) #23	ENSPEMG00000017948 #24	Dpp9 (ENSPEMG00000017445) #25	Mydgf (ENSPEMG00000030525) #26	Tnfaip8l1 (ENSPEMG00000024674) #27	Sema6b (ENSPEMG00000011380) #28	Lrg1 (ENSPEMG00000014365) #29	Plin5 (ENSPEMG00000020848) #30	Hdgfl2 (ENSPEMG00000024063) #32	Ubxn6 (ENSPEMG00000021305) #33	Chaf1a (ENSPEMG00000009601) #34	Sh3gl1 (ENSPEMG00000018574) #35	Mpnd (ENSPEMG00000015273) #36	Stap2 (ENSPEMG00000017988)	Fsd1 (ENSPEMG00000020510)
Murinae	ANCESTRAL SPECIES	38	ENSGT00390000007212	ENSGT00940000162442	ENSGT00940000158588	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Mus	ANCESTRAL SPECIES	16	ENSGT00390000012434	ENSGT00390000007212	ENSGT00940000158588	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000012434.k	ENSGT00390000007212	ENSGT00940000158588	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Mus_B	ANCESTRAL SPECIES	9	ENSGT00390000012434.k	ENSGT00390000007212	ENSGT00940000158588	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00390000002629 #13	ENSGT00940000155916 #14	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
Mus_C	ANCESTRAL SPECIES	9	ENSGT00950000182993.A.a #7	ENSGT00390000012434.k	ENSGT00390000007212	ENSGT00940000158588	ENSGT00940000162714	ENSGT00530000063553.b.a #10	ENSGT00390000011943.a.a.a.b ##11	ENSGT00390000002629 #13	ENSGT00940000161482 #15	ENSGT01010000222837 #16	ENSGT00940000163061 #17	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b
spretus	MODERN SPECIES	8	Nrtn (MGP_SPRETEiJ_G0022699) #7	Ndufa11 (MGP_SPRETEiJ_G0022698)	Vmac (MGP_SPRETEiJ_G0022697)	Ranbp3 (MGP_SPRETEiJ_G0022696)	Catsperd (MGP_SPRETEiJ_G0022695)	Lonp1 (MGP_SPRETEiJ_G0022694) #10	MGP_SPRETEiJ_G0022693 ##11	Micos13 (MGP_SPRETEiJ_G0022692) #13	MGP_SPRETEiJ_G0022691	Safb2 (MGP_SPRETEiJ_G0022690) #15	Znrf4 (MGP_SPRETEiJ_G0022689) #17	Ptprs (MGP_SPRETEiJ_G0022688) #18	Kdm4b (MGP_SPRETEiJ_G0022687) #19	Uhrf1 (MGP_SPRETEiJ_G0022686) #20	Arrdc5 (MGP_SPRETEiJ_G0022685) #21	Plin3 (MGP_SPRETEiJ_G0022684) #22	Ticam1 (MGP_SPRETEiJ_G0022683) #23	Dpp9 (MGP_SPRETEiJ_G0022682) #25	Mydgf (MGP_SPRETEiJ_G0022681) #26	Tnfaip8l1 (MGP_SPRETEiJ_G0022680) #27	Sema6b (MGP_SPRETEiJ_G0022679) #28	Lrg1 (MGP_SPRETEiJ_G0022678) #29	Plin5 (MGP_SPRETEiJ_G0022677) #30	MGP_SPRETEiJ_G0022676 #31	Hdgfl2 (MGP_SPRETEiJ_G0022675) #32	Ubxn6 (MGP_SPRETEiJ_G0022674) #33	Chaf1a (MGP_SPRETEiJ_G0022673) #34	Sh3gl1 (MGP_SPRETEiJ_G0022672) #35	Mpnd (MGP_SPRETEiJ_G0022671) #36	Stap2 (MGP_SPRETEiJ_G0022670)	Fsd1 (MGP_SPRETEiJ_G0022669)
Steppe mouse	MODERN SPECIES	2947									ENSMSIG00000011258 #15	Tincr (ENSMSIG00000011295) #16	Znrf4 (ENSMSIG00000011305) #17	Ptprs (ENSMSIG00000011333) #18	Kdm4b (ENSMSIG00000011694) #19	Uhrf1 (ENSMSIG00000011866) #20	Arrdc5 (ENSMSIG00000011961) #21	Plin3 (ENSMSIG00000011976) #22	Ticam1 (ENSMSIG00000011992) #23	ENSMSIG00000012002 #24	Dpp9 (ENSMSIG00000012019) #25	Mydgf (ENSMSIG00000012037) #26	Tnfaip8l1 (ENSMSIG00000012049) #27	Sema6b (ENSMSIG00000012056) #28	Lrg1 (ENSMSIG00000012144) #29	Plin5 (ENSMSIG00000012155) #30	Hdgfl2 (ENSMSIG00000012261) #32	Ubxn6 (ENSMSIG00000012300) #33	Chaf1a (ENSMSIG00000012336) #34	Sh3gl1 (ENSMSIG00000012377) #35	Mpnd (ENSMSIG00000012411) #36	ENSMSIG00000012511	Stap2 (ENSMSIG00000012517)
Mouse	MODERN SPECIES	8	Ndufa11 (ENSMUSG00000002379)	Vmac (ENSMUSG00000054723)	Ranbp3 (ENSMUSG00000002372)	Catsperd (ENSMUSG00000040828)	Lonp1 (ENSMUSG00000041168) #10	Rpl36 (ENSMUSG00000057863) #11	Micos13 (ENSMUSG00000049760) #13	Safb (ENSMUSG00000071054) #14	Safb2 (ENSMUSG00000042625) #15	Tincr (ENSMUSG00000110218) #16	Znrf4 (ENSMUSG00000044526) #17	Ptprs (ENSMUSG00000013236) #18	Kdm4b (ENSMUSG00000024201) #19	Uhrf1 (ENSMUSG00000001228) #20	Arrdc5 (ENSMUSG00000073380) #21	Plin3 (ENSMUSG00000024197) #22	Ticam1 (ENSMUSG00000047123) #23	Fem1a (ENSMUSG00000043683) #24	Dpp9 (ENSMUSG00000001229) #25	Mydgf (ENSMUSG00000019579) #26	Tnfaip8l1 (ENSMUSG00000044469) #27	Sema6b (ENSMUSG00000001227) #28	Lrg1 (ENSMUSG00000037095) #29	Plin5 (ENSMUSG00000011305) #30	Plin4 (ENSMUSG00000002831) #31	Hdgfl2 (ENSMUSG00000002833) #32	Ubxn6 (ENSMUSG00000019578) #33	Chaf1a (ENSMUSG00000002835) #34	Sh3gl1 (ENSMUSG00000003200) #35	Mpnd (ENSMUSG00000003199) #36	Stap2 (ENSMUSG00000038781)
Ryukyu mouse	MODERN SPECIES	8	Nrtn (MGP_CAROLIEiJ_G0021788) #7	Ndufa11 (MGP_CAROLIEiJ_G0021787)	Vmac (MGP_CAROLIEiJ_G0021786)	Ranbp3 (MGP_CAROLIEiJ_G0021785)	Catsperd (MGP_CAROLIEiJ_G0021784)	Lonp1 (MGP_CAROLIEiJ_G0021783) #10	MGP_CAROLIEiJ_G0021782 ##11	Micos13 (MGP_CAROLIEiJ_G0021781) #13	Safb (MGP_CAROLIEiJ_G0021780) #14	Safb2 (MGP_CAROLIEiJ_G0021779) #15	Znrf4 (MGP_CAROLIEiJ_G0021778) #17	Ptprs (MGP_CAROLIEiJ_G0021777) #18	Kdm4b (MGP_CAROLIEiJ_G0021776) #19	Uhrf1 (MGP_CAROLIEiJ_G0021775) #20	Arrdc5 (MGP_CAROLIEiJ_G0021774) #21	Plin3 (MGP_CAROLIEiJ_G0021773) #22	Ticam1 (MGP_CAROLIEiJ_G0021772) #23	MGP_CAROLIEiJ_G0021771 #24	Dpp9 (MGP_CAROLIEiJ_G0021770) #25	Mydgf (MGP_CAROLIEiJ_G0021769) #26	Tnfaip8l1 (MGP_CAROLIEiJ_G0021768) #27	Sema6b (MGP_CAROLIEiJ_G0021767) #28	Lrg1 (MGP_CAROLIEiJ_G0021766) #29	Plin5 (MGP_CAROLIEiJ_G0021765) #30	MGP_CAROLIEiJ_G0021764 #31	Hdgfl2 (MGP_CAROLIEiJ_G0021763) #32	Ubxn6 (MGP_CAROLIEiJ_G0021762) #33	Chaf1a (MGP_CAROLIEiJ_G0021761) #34	Sh3gl1 (MGP_CAROLIEiJ_G0021760) #35	Mpnd (MGP_CAROLIEiJ_G0021759) #36	Stap2 (MGP_CAROLIEiJ_G0021758)
Shrew mouse	MODERN SPECIES	9	Nrtn (MGP_PahariEiJ_G0020777) #7	Ndufa11 (MGP_PahariEiJ_G0020776)	Vmac (MGP_PahariEiJ_G0020775)	Ranbp3 (MGP_PahariEiJ_G0020774)	Catsperd (MGP_PahariEiJ_G0020773)	Lonp1 (MGP_PahariEiJ_G0020772) #10	MGP_PahariEiJ_G0020771 ##11	Micos13 (MGP_PahariEiJ_G0020770) #13	Safb (MGP_PahariEiJ_G0020769) #14	Safb2 (MGP_PahariEiJ_G0020768) #15	Znrf4 (MGP_PahariEiJ_G0020767) #17	Ptprs (MGP_PahariEiJ_G0020766) #18	Kdm4b (MGP_PahariEiJ_G0020765) #19	Uhrf1 (MGP_PahariEiJ_G0020764) #20	Arrdc5 (MGP_PahariEiJ_G0020763) #21	Plin3 (MGP_PahariEiJ_G0020762) #22	Ticam1 (MGP_PahariEiJ_G0020761) #23	MGP_PahariEiJ_G0020760 #24	Dpp9 (MGP_PahariEiJ_G0020759) #25	Mydgf (MGP_PahariEiJ_G0020758) #26	Tnfaip8l1 (MGP_PahariEiJ_G0020757) #27	Sema6b (MGP_PahariEiJ_G0020756) #28	Lrg1 (MGP_PahariEiJ_G0020755) #29	Plin5 (MGP_PahariEiJ_G0020754) #30	MGP_PahariEiJ_G0020753 #31	Hdgfl2 (MGP_PahariEiJ_G0020752) #32	Ubxn6 (MGP_PahariEiJ_G0020751) #33	Chaf1a (MGP_PahariEiJ_G0020750) #34	Sh3gl1 (MGP_PahariEiJ_G0020749) #35	Mpnd (MGP_PahariEiJ_G0020748) #36	Stap2 (MGP_PahariEiJ_G0020747)
Rat	MODERN SPECIES	12	Cdk1 (ENSRNOG00000000632)	Rhobtb1 (ENSRNOG00000000633)	Tmem26 (ENSRNOG00000027859)	Cabcoco1 (ENSRNOG00000000634)	Arid5b (ENSRNOG00000000635)	Rtkn2 (ENSRNOG00000000636)	Rtkn2 (ENSRNOG00000067849)	Zfp365 (ENSRNOG00000000638)	Ado (ENSRNOG00000070733)	Egr2 (ENSRNOG00000000640)	Nrbf2 (ENSRNOG00000000641)	Jmjd1c (ENSRNOG00000000648)	Reep3 (ENSRNOG00000000645)	Dnal4-ps1 (ENSRNOG00000067902)	Rpl36al-ps5 (ENSRNOG00000032408)	ENSRNOG00000070329 #22	ENSRNOG00000070306	Ctnna3 (ENSRNOG00000000373)	Lrrtm3 (ENSRNOG00000026466)	ENSRNOG00000069858	LOC108349010 (ENSRNOG00000000376)	ENSRNOG00000066776	Dnajc12 (ENSRNOG00000051960)	Sirt1 (ENSRNOG00000051592)	Herc4 (ENSRNOG00000061040)	Mypn (ENSRNOG00000000383)	Atoh7 (ENSRNOG00000000384)	Pbld1 (ENSRNOG00000000386)	Pbld2 (ENSRNOG00000069854)	Ak6 (ENSRNOG00000026813)	Hnrnph3 (ENSRNOG00000048193)
Upper Galilee mountains blind mole rat	MODERN SPECIES	975	Ndufa11 (ENSNGAG00000017779)	Vmac (ENSNGAG00000016642)	Ranbp3 (ENSNGAG00000015130)	Catsperd (ENSNGAG00000021716)	Lonp1 (ENSNGAG00000018118) #10	ENSNGAG00000021002 ##11	ENSNGAG00000022750 #12	ENSNGAG00000021672 #13	Safb (ENSNGAG00000019882) #14	ENSNGAG00000018473 #15	Tincr (ENSNGAG00000021324) #16	Ptprs (ENSNGAG00000019407) #18	Kdm4b (ENSNGAG00000021232) #19	Uhrf1 (ENSNGAG00000022853) #20	Arrdc5 (ENSNGAG00000020666) #21	Plin3 (ENSNGAG00000021889) #22	Ticam1 (ENSNGAG00000014467) #23	ENSNGAG00000018411 #24	Dpp9 (ENSNGAG00000021967) #25	Mydgf (ENSNGAG00000015445) #26	Tnfaip8l1 (ENSNGAG00000016594) #27	Sema6b (ENSNGAG00000023267) #28	Lrg1 (ENSNGAG00000020538) #29	Plin5 (ENSNGAG00000023114) #30	ENSNGAG00000022527 #31	ENSNGAG00000021303 #32	Ubxn6 (ENSNGAG00000020979) #33	Chaf1a (ENSNGAG00000020900) #34	Sh3gl1 (ENSNGAG00000022192) #35	Mpnd (ENSNGAG00000022278) #36	Stap2 (ENSNGAG00000021317)
Lesser Egyptian jerboa	MODERN SPECIES	55	Ndufa11 (ENSJJAG00000023264)	Vmac (ENSJJAG00000021312)	ENSJJAG00000017779	Ranbp3 (ENSJJAG00000007163)	Lonp1 (ENSJJAG00000021237) #10	ENSJJAG00000020144 #11	ENSJJAG00000023960 #13	Safb (ENSJJAG00000009021) #14	ENSJJAG00000015942 #15	Tincr (ENSJJAG00000015733) #16	Znrf4 (ENSJJAG00000015898) #17	Ptprs (ENSJJAG00000022069) #18	Kdm4b (ENSJJAG00000014716) #19	Uhrf1 (ENSJJAG00000016105) #20	Arrdc5 (ENSJJAG00000014627) #21	Plin3 (ENSJJAG00000008038) #22	Ticam1 (ENSJJAG00000021374) #23	ENSJJAG00000000960 #24	Dpp9 (ENSJJAG00000005661) #25	Mydgf (ENSJJAG00000022035) #26	Tnfaip8l1 (ENSJJAG00000000765) #27	Sema6b (ENSJJAG00000007447) #28	Lrg1 (ENSJJAG00000017118) #29	Plin5 (ENSJJAG00000023502) #30	ENSJJAG00000022653 #31	Hdgfl2 (ENSJJAG00000017363) #32	Ubxn6 (ENSJJAG00000019017) #33	Chaf1a (ENSJJAG00000023703) #34	Sh3gl1 (ENSJJAG00000023551) #35	Mpnd (ENSJJAG00000011677) #36	Stap2 (ENSJJAG00000019818)
Lagomorpha	ANCESTRAL SPECIES	673																ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23
Pika	MODERN SPECIES	1749																ENSOPRG00000002838 #22	ENSOPRG00000002806 #23
Tree shrew	MODERN SPECIES	83																ENSTBEG00000015596 #22