Rodentia	ANCESTRAL SPECIES	17	ENSGT00550000075134	ENSGT00390000016128	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00940000162487 #13	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Rodentia_B	ANCESTRAL SPECIES	28	ENSGT00550000075134	ENSGT00390000016128	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00940000162487 #13	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Myomorpha	ANCESTRAL SPECIES	27	ENSGT00940000162442	ENSGT00940000158588 #9	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00940000162487 #13	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Muroidea	ANCESTRAL SPECIES	32	ENSGT00940000162442	ENSGT00940000158588 #9	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00940000162487 #13	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	975	Ndufa11 (ENSNGAG00000017779) #7	Vmac (ENSNGAG00000016642) #8	Ranbp3 (ENSNGAG00000015130) #9	Catsperd (ENSNGAG00000021716) #10	Lonp1 (ENSNGAG00000018118) #11	ENSNGAG00000021002 #12	ENSNGAG00000022750 #13	ENSNGAG00000021672 #14	Safb (ENSNGAG00000019882) #15	ENSNGAG00000018473 #16	Tincr (ENSNGAG00000021324) #17	Ptprs (ENSNGAG00000019407) #18	Kdm4b (ENSNGAG00000021232) #19	Uhrf1 (ENSNGAG00000022853) #20	Arrdc5 (ENSNGAG00000020666) #21	Plin3 (ENSNGAG00000021889) #22	Ticam1 (ENSNGAG00000014467) #23	ENSNGAG00000018411 #24	Dpp9 (ENSNGAG00000021967) #25	Mydgf (ENSNGAG00000015445) #26	Tnfaip8l1 (ENSNGAG00000016594) #27	Sema6b (ENSNGAG00000023267) #28	Lrg1 (ENSNGAG00000020538) #29	Plin5 (ENSNGAG00000023114) #30	ENSNGAG00000022527 #31	ENSNGAG00000021303 #32	Ubxn6 (ENSNGAG00000020979) #33	Chaf1a (ENSNGAG00000020900) #34	Sh3gl1 (ENSNGAG00000022192) #35	Mpnd (ENSNGAG00000022278) #36	Stap2 (ENSNGAG00000021317) #37
Muroidea_A	ANCESTRAL SPECIES	25	ENSGT00390000007212 #8	ENSGT00940000162442	ENSGT00940000158588 #9	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Cricetidae	ANCESTRAL SPECIES	25	ENSGT00390000007212 #8	ENSGT00940000162442	ENSGT00940000158588 #9	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000007212 #8	ENSGT00940000162442	ENSGT00940000158588 #9	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Golden Hamster	MODERN SPECIES	730	Nrtn (ENSMAUG00000001043)	Ndufa11 (ENSMAUG00000021572) #7	Vmac (ENSMAUG00000009455) #8	ENSMAUG00000013827	Ranbp3 (ENSMAUG00000011228) #9	Catsperd (ENSMAUG00000009178) #10	Lonp1 (ENSMAUG00000013293) #11	ENSMAUG00000018691 ##12	Safb2 (ENSMAUG00000011573) #16	Tincr (ENSMAUG00000006706) #17	Znrf4 (ENSMAUG00000008614)	Ptprs (ENSMAUG00000003364) #18	Kdm4b (ENSMAUG00000022140) #19	Uhrf1 (ENSMAUG00000021640) #20	Arrdc5 (ENSMAUG00000019305) #21	Plin3 (ENSMAUG00000013422) #22	ENSMAUG00000008605 #24	Dpp9 (ENSMAUG00000018726) #25	Mydgf (ENSMAUG00000018887) #26	Tnfaip8l1 (ENSMAUG00000010017) #27	Sema6b (ENSMAUG00000008147) #28	Lrg1 (ENSMAUG00000013924) #29	Plin5 (ENSMAUG00000021120) #30	ENSMAUG00000002748 #32	Ubxn6 (ENSMAUG00000009388) #33	Chaf1a (ENSMAUG00000011198) #34	Sh3gl1 (ENSMAUG00000010873) #35	Mpnd (ENSMAUG00000021460) #36	Stap2 (ENSMAUG00000008549) #37	Fsd1 (ENSMAUG00000014625)	Shd (ENSMAUG00000015964)
Chinese hamster chok1gshd	MODERN SPECIES	2	Vmac (ENSCGRG00001023793) #8	ENSCGRG00001021756	Ranbp3 (ENSCGRG00001022677) #9	Catsperd (ENSCGRG00001010087) #10	Lonp1 (ENSCGRG00001021835) #11	ENSCGRG00001020793 #12	Safb (ENSCGRG00001002254) #15	Micos13 (ENSCGRG00001016715) #14	Safb2 (ENSCGRG00001015833) #16	Tincr (ENSCGRG00001024474) #17	Znrf4 (ENSCGRG00001009066)	Ptprs (ENSCGRG00001023963) #18	Kdm4b (ENSCGRG00001010495) #19	Uhrf1 (ENSCGRG00001012088) #20	Arrdc5 (ENSCGRG00001020830) #21	Plin3 (ENSCGRG00001021231) #22	Ticam1 (ENSCGRG00001005336) #23	ENSCGRG00001010179 #24	Dpp9 (ENSCGRG00001020770) #25	Mydgf (ENSCGRG00001021243) #26	Tnfaip8l1 (ENSCGRG00001008281) #27	Sema6b (ENSCGRG00001023299) #28	Lrg1 (ENSCGRG00001024126) #29	Plin5 (ENSCGRG00001006081) #30	Plin4 (ENSCGRG00001009471) #31	Hdgfl2 (ENSCGRG00001012579) #32	Ubxn6 (ENSCGRG00001016075) #33	Chaf1a (ENSCGRG00001022507) #34	Sh3gl1 (ENSCGRG00001023427) #35	Mpnd (ENSCGRG00001015203) #36	Stap2 (ENSCGRG00001004912) #37
Cricetidae_B	ANCESTRAL SPECIES	27	ENSGT00390000007212 #8	ENSGT00940000162442	ENSGT00940000158588 #9	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.a.a.b ##12	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37	ENSGT00940000159440
Prairie vole	MODERN SPECIES	9	Ptpn5 (ENSMOCG00000002109)	ENSMOCG00000020275	Mrgprx1 (ENSMOCG00000021193)	ENSMOCG00000009273	ENSMOCG00000000883	ENSMOCG00000012949	ENSMOCG00000017120	ENSMOCG00000000184	ENSMOCG00000001550	Svip (ENSMOCG00000012616)	Gas2 (ENSMOCG00000013131)	Fancf (ENSMOCG00000013896)	Slc17a6 (ENSMOCG00000020959)	Ano5 (ENSMOCG00000017702)	Arrdc5 (ENSMOCG00000019187) #21	Plin3 (ENSMOCG00000000153) #22	Ticam1 (ENSMOCG00000001352) #23	ENSMOCG00000001639 #24	Dpp9 (ENSMOCG00000014863) #25	Mydgf (ENSMOCG00000004213) #26	Tnfaip8l1 (ENSMOCG00000009632) #27	Sema6b (ENSMOCG00000011179) #28	Lrg1 (ENSMOCG00000017018) #29	Plin5 (ENSMOCG00000021153) #30	Hdgfl2 (ENSMOCG00000020415) #32	Ubxn6 (ENSMOCG00000013954) #33	Chaf1a (ENSMOCG00000020238) #34	ENSMOCG00000020338 #35	Mpnd (ENSMOCG00000017152) #36	Stap2 (ENSMOCG00000022151) #37	Fsd1 (ENSMOCG00000014990)
Northern American deer mouse	MODERN SPECIES	14	Ndufa11 (ENSPEMG00000020648) #7	ENSPEMG00000026816	ENSPEMG00000020906	Ranbp3 (ENSPEMG00000020448) #9	Lonp1 (ENSPEMG00000020753) #11	ENSPEMG00000014036 ##12	Micos13 (ENSPEMG00000009993) #14	Safb (ENSPEMG00000020428) #15	Safb2 (ENSPEMG00000016015) #16	Tincr (ENSPEMG00000023023) #17	Znrf4 (ENSPEMG00000006665)	Ptprs (ENSPEMG00000020799) #18	Kdm4b (ENSPEMG00000021576) #19	Uhrf1 (ENSPEMG00000016633) #20	ENSPEMG00000025270 #21	Plin3 (ENSPEMG00000022494) #22	Ticam1 (ENSPEMG00000026452) #23	ENSPEMG00000017948 #24	Dpp9 (ENSPEMG00000017445) #25	Mydgf (ENSPEMG00000030525) #26	Tnfaip8l1 (ENSPEMG00000024674) #27	Sema6b (ENSPEMG00000011380) #28	Lrg1 (ENSPEMG00000014365) #29	Plin5 (ENSPEMG00000020848) #30	Hdgfl2 (ENSPEMG00000024063) #32	Ubxn6 (ENSPEMG00000021305) #33	Chaf1a (ENSPEMG00000009601) #34	Sh3gl1 (ENSPEMG00000018574) #35	Mpnd (ENSPEMG00000015273) #36	Stap2 (ENSPEMG00000017988) #37	Fsd1 (ENSPEMG00000020510)
Murinae	ANCESTRAL SPECIES	38	ENSGT00390000007212 #8	ENSGT00940000162442	ENSGT00940000158588 #9	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Mus	ANCESTRAL SPECIES	16	ENSGT00390000012434 #7	ENSGT00390000007212 #8	ENSGT00940000158588 #9	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000012434.k #7	ENSGT00390000007212 #8	ENSGT00940000158588 #9	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Mus_B	ANCESTRAL SPECIES	9	ENSGT00390000012434.k #7	ENSGT00390000007212 #8	ENSGT00940000158588 #9	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Mus_C	ANCESTRAL SPECIES	9	ENSGT00950000182993.A.a	ENSGT00390000012434.k #7	ENSGT00390000007212 #8	ENSGT00940000158588 #9	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00390000002629 #14	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
spretus	MODERN SPECIES	8	Nrtn (MGP_SPRETEiJ_G0022699)	Ndufa11 (MGP_SPRETEiJ_G0022698) #7	Vmac (MGP_SPRETEiJ_G0022697) #8	Ranbp3 (MGP_SPRETEiJ_G0022696) #9	Catsperd (MGP_SPRETEiJ_G0022695) #10	Lonp1 (MGP_SPRETEiJ_G0022694) #11	MGP_SPRETEiJ_G0022693 #12	Micos13 (MGP_SPRETEiJ_G0022692) #14	MGP_SPRETEiJ_G0022691	Safb2 (MGP_SPRETEiJ_G0022690) #16	Znrf4 (MGP_SPRETEiJ_G0022689)	Ptprs (MGP_SPRETEiJ_G0022688) #18	Kdm4b (MGP_SPRETEiJ_G0022687) #19	Uhrf1 (MGP_SPRETEiJ_G0022686) #20	Arrdc5 (MGP_SPRETEiJ_G0022685) #21	Plin3 (MGP_SPRETEiJ_G0022684) #22	Ticam1 (MGP_SPRETEiJ_G0022683) #23	Dpp9 (MGP_SPRETEiJ_G0022682) #25	Mydgf (MGP_SPRETEiJ_G0022681) #26	Tnfaip8l1 (MGP_SPRETEiJ_G0022680) #27	Sema6b (MGP_SPRETEiJ_G0022679) #28	Lrg1 (MGP_SPRETEiJ_G0022678) #29	Plin5 (MGP_SPRETEiJ_G0022677) #30	MGP_SPRETEiJ_G0022676 #31	Hdgfl2 (MGP_SPRETEiJ_G0022675) #32	Ubxn6 (MGP_SPRETEiJ_G0022674) #33	Chaf1a (MGP_SPRETEiJ_G0022673) #34	Sh3gl1 (MGP_SPRETEiJ_G0022672) #35	Mpnd (MGP_SPRETEiJ_G0022671) #36	Stap2 (MGP_SPRETEiJ_G0022670) #37	Fsd1 (MGP_SPRETEiJ_G0022669)
Steppe mouse	MODERN SPECIES	2947									ENSMSIG00000011258 #16	Tincr (ENSMSIG00000011295) #17	Znrf4 (ENSMSIG00000011305)	Ptprs (ENSMSIG00000011333) #18	Kdm4b (ENSMSIG00000011694) #19	Uhrf1 (ENSMSIG00000011866) #20	Arrdc5 (ENSMSIG00000011961) #21	Plin3 (ENSMSIG00000011976) #22	Ticam1 (ENSMSIG00000011992) #23	ENSMSIG00000012002 #24	Dpp9 (ENSMSIG00000012019) #25	Mydgf (ENSMSIG00000012037) #26	Tnfaip8l1 (ENSMSIG00000012049) #27	Sema6b (ENSMSIG00000012056) #28	Lrg1 (ENSMSIG00000012144) #29	Plin5 (ENSMSIG00000012155) #30	Hdgfl2 (ENSMSIG00000012261) #32	Ubxn6 (ENSMSIG00000012300) #33	Chaf1a (ENSMSIG00000012336) #34	Sh3gl1 (ENSMSIG00000012377) #35	Mpnd (ENSMSIG00000012411) #36	ENSMSIG00000012511	Stap2 (ENSMSIG00000012517) #37
Mouse	MODERN SPECIES	8	Ndufa11 (ENSMUSG00000002379) #7	Vmac (ENSMUSG00000054723) #8	Ranbp3 (ENSMUSG00000002372) #9	Catsperd (ENSMUSG00000040828) #10	Lonp1 (ENSMUSG00000041168) #11	Rpl36 (ENSMUSG00000057863) ##12	Micos13 (ENSMUSG00000049760) #14	Safb (ENSMUSG00000071054) #15	Safb2 (ENSMUSG00000042625) #16	Tincr (ENSMUSG00000110218) #17	Znrf4 (ENSMUSG00000044526)	Ptprs (ENSMUSG00000013236) #18	Kdm4b (ENSMUSG00000024201) #19	Uhrf1 (ENSMUSG00000001228) #20	Arrdc5 (ENSMUSG00000073380) #21	Plin3 (ENSMUSG00000024197) #22	Ticam1 (ENSMUSG00000047123) #23	Fem1a (ENSMUSG00000043683) #24	Dpp9 (ENSMUSG00000001229) #25	Mydgf (ENSMUSG00000019579) #26	Tnfaip8l1 (ENSMUSG00000044469) #27	Sema6b (ENSMUSG00000001227) #28	Lrg1 (ENSMUSG00000037095) #29	Plin5 (ENSMUSG00000011305) #30	Plin4 (ENSMUSG00000002831) #31	Hdgfl2 (ENSMUSG00000002833) #32	Ubxn6 (ENSMUSG00000019578) #33	Chaf1a (ENSMUSG00000002835) #34	Sh3gl1 (ENSMUSG00000003200) #35	Mpnd (ENSMUSG00000003199) #36	Stap2 (ENSMUSG00000038781) #37
Ryukyu mouse	MODERN SPECIES	8	Nrtn (MGP_CAROLIEiJ_G0021788)	Ndufa11 (MGP_CAROLIEiJ_G0021787) #7	Vmac (MGP_CAROLIEiJ_G0021786) #8	Ranbp3 (MGP_CAROLIEiJ_G0021785) #9	Catsperd (MGP_CAROLIEiJ_G0021784) #10	Lonp1 (MGP_CAROLIEiJ_G0021783) #11	MGP_CAROLIEiJ_G0021782 #12	Micos13 (MGP_CAROLIEiJ_G0021781) #14	Safb (MGP_CAROLIEiJ_G0021780) #15	Safb2 (MGP_CAROLIEiJ_G0021779) #16	Znrf4 (MGP_CAROLIEiJ_G0021778)	Ptprs (MGP_CAROLIEiJ_G0021777) #18	Kdm4b (MGP_CAROLIEiJ_G0021776) #19	Uhrf1 (MGP_CAROLIEiJ_G0021775) #20	Arrdc5 (MGP_CAROLIEiJ_G0021774) #21	Plin3 (MGP_CAROLIEiJ_G0021773) #22	Ticam1 (MGP_CAROLIEiJ_G0021772) #23	MGP_CAROLIEiJ_G0021771 #24	Dpp9 (MGP_CAROLIEiJ_G0021770) #25	Mydgf (MGP_CAROLIEiJ_G0021769) #26	Tnfaip8l1 (MGP_CAROLIEiJ_G0021768) #27	Sema6b (MGP_CAROLIEiJ_G0021767) #28	Lrg1 (MGP_CAROLIEiJ_G0021766) #29	Plin5 (MGP_CAROLIEiJ_G0021765) #30	MGP_CAROLIEiJ_G0021764 #31	Hdgfl2 (MGP_CAROLIEiJ_G0021763) #32	Ubxn6 (MGP_CAROLIEiJ_G0021762) #33	Chaf1a (MGP_CAROLIEiJ_G0021761) #34	Sh3gl1 (MGP_CAROLIEiJ_G0021760) #35	Mpnd (MGP_CAROLIEiJ_G0021759) #36	Stap2 (MGP_CAROLIEiJ_G0021758) #37
Shrew mouse	MODERN SPECIES	9	Nrtn (MGP_PahariEiJ_G0020777)	Ndufa11 (MGP_PahariEiJ_G0020776) #7	Vmac (MGP_PahariEiJ_G0020775) #8	Ranbp3 (MGP_PahariEiJ_G0020774) #9	Catsperd (MGP_PahariEiJ_G0020773) #10	Lonp1 (MGP_PahariEiJ_G0020772) #11	MGP_PahariEiJ_G0020771 #12	Micos13 (MGP_PahariEiJ_G0020770) #14	Safb (MGP_PahariEiJ_G0020769) #15	Safb2 (MGP_PahariEiJ_G0020768) #16	Znrf4 (MGP_PahariEiJ_G0020767)	Ptprs (MGP_PahariEiJ_G0020766) #18	Kdm4b (MGP_PahariEiJ_G0020765) #19	Uhrf1 (MGP_PahariEiJ_G0020764) #20	Arrdc5 (MGP_PahariEiJ_G0020763) #21	Plin3 (MGP_PahariEiJ_G0020762) #22	Ticam1 (MGP_PahariEiJ_G0020761) #23	MGP_PahariEiJ_G0020760 #24	Dpp9 (MGP_PahariEiJ_G0020759) #25	Mydgf (MGP_PahariEiJ_G0020758) #26	Tnfaip8l1 (MGP_PahariEiJ_G0020757) #27	Sema6b (MGP_PahariEiJ_G0020756) #28	Lrg1 (MGP_PahariEiJ_G0020755) #29	Plin5 (MGP_PahariEiJ_G0020754) #30	MGP_PahariEiJ_G0020753 #31	Hdgfl2 (MGP_PahariEiJ_G0020752) #32	Ubxn6 (MGP_PahariEiJ_G0020751) #33	Chaf1a (MGP_PahariEiJ_G0020750) #34	Sh3gl1 (MGP_PahariEiJ_G0020749) #35	Mpnd (MGP_PahariEiJ_G0020748) #36	Stap2 (MGP_PahariEiJ_G0020747) #37
Rat	MODERN SPECIES	12	Cdk1 (ENSRNOG00000000632)	Rhobtb1 (ENSRNOG00000000633)	Tmem26 (ENSRNOG00000027859)	Cabcoco1 (ENSRNOG00000000634)	Arid5b (ENSRNOG00000000635)	Rtkn2 (ENSRNOG00000000636)	Rtkn2 (ENSRNOG00000067849)	Zfp365 (ENSRNOG00000000638)	Ado (ENSRNOG00000070733)	Egr2 (ENSRNOG00000000640)	Nrbf2 (ENSRNOG00000000641)	Jmjd1c (ENSRNOG00000000648)	Reep3 (ENSRNOG00000000645)	Dnal4-ps1 (ENSRNOG00000067902)	Rpl36al-ps5 (ENSRNOG00000032408)	ENSRNOG00000070329 #22	ENSRNOG00000070306	Ctnna3 (ENSRNOG00000000373)	Lrrtm3 (ENSRNOG00000026466)	ENSRNOG00000069858	LOC108349010 (ENSRNOG00000000376)	ENSRNOG00000066776	Dnajc12 (ENSRNOG00000051960)	Sirt1 (ENSRNOG00000051592)	Herc4 (ENSRNOG00000061040)	Mypn (ENSRNOG00000000383)	Atoh7 (ENSRNOG00000000384)	Pbld1 (ENSRNOG00000000386)	Pbld2 (ENSRNOG00000069854)	Ak6 (ENSRNOG00000026813)	Hnrnph3 (ENSRNOG00000048193)
Lesser Egyptian jerboa	MODERN SPECIES	55	Ndufa11 (ENSJJAG00000023264) #7	Vmac (ENSJJAG00000021312) #8	ENSJJAG00000017779	Ranbp3 (ENSJJAG00000007163) #9	Lonp1 (ENSJJAG00000021237) #11	ENSJJAG00000020144 ##12	ENSJJAG00000023960 #14	Safb (ENSJJAG00000009021) #15	ENSJJAG00000015942 #16	Tincr (ENSJJAG00000015733) #17	Znrf4 (ENSJJAG00000015898)	Ptprs (ENSJJAG00000022069) #18	Kdm4b (ENSJJAG00000014716) #19	Uhrf1 (ENSJJAG00000016105) #20	Arrdc5 (ENSJJAG00000014627) #21	Plin3 (ENSJJAG00000008038) #22	Ticam1 (ENSJJAG00000021374) #23	ENSJJAG00000000960 #24	Dpp9 (ENSJJAG00000005661) #25	Mydgf (ENSJJAG00000022035) #26	Tnfaip8l1 (ENSJJAG00000000765) #27	Sema6b (ENSJJAG00000007447) #28	Lrg1 (ENSJJAG00000017118) #29	Plin5 (ENSJJAG00000023502) #30	ENSJJAG00000022653 #31	Hdgfl2 (ENSJJAG00000017363) #32	Ubxn6 (ENSJJAG00000019017) #33	Chaf1a (ENSJJAG00000023703) #34	Sh3gl1 (ENSJJAG00000023551) #35	Mpnd (ENSJJAG00000011677) #36	Stap2 (ENSJJAG00000019818) #37
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00550000075134	ENSGT00390000016128	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00940000162487 #13	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00940000162487 #13	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Marmotini	ANCESTRAL SPECIES	24	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00940000162487 #13	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00940000162487 #13	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Arctic ground squirrel	MODERN SPECIES	301	NRTN (ENSUPAG00010023641)	DUS3L (ENSUPAG00010023640)	PRR22 (ENSUPAG00010023639)	LONP1 (ENSUPAG00010023636) #11	RPL36 (ENSUPAG00010023635) #12	HSD11B1L (ENSUPAG00010023634) #13	MICOS13 (ENSUPAG00010023633) #14	SAFB (ENSUPAG00010023630) #15	SAFB2 (ENSUPAG00010023625) #16	ENSUPAG00010023624 #17	ZNRF4 (ENSUPAG00010023622)	PTPRS (ENSUPAG00010010260) #18	KDM4B (ENSUPAG00010010101) #19	UHRF1 (ENSUPAG00010010060) #20	ENSUPAG00010010053 #21	PLIN3 (ENSUPAG00010010038) #22	TICAM1 (ENSUPAG00010010031) #23	FEM1A (ENSUPAG00010010026) #24	DPP9 (ENSUPAG00010009974) #25	MYDGF (ENSUPAG00010009956) #26	TNFAIP8L1 (ENSUPAG00010009951) #27	SEMA6B (ENSUPAG00010009930) #28	LRG1 (ENSUPAG00010009927) #29	PLIN5 (ENSUPAG00010009919) #30	ENSUPAG00010009913 #31	HDGFL2 (ENSUPAG00010009901) #32	UBXN6 (ENSUPAG00010009881) #33	CHAF1A (ENSUPAG00010009868) #34	SH3GL1 (ENSUPAG00010009851) #35	MPND (ENSUPAG00010009625) #36	STAP2 (ENSUPAG00010009594) #37
Squirrel	MODERN SPECIES	188	NRTN (ENSSTOG00000009542)	DUS3L (ENSSTOG00000025017)	PRR22 (ENSSTOG00000025571)	LONP1 (ENSSTOG00000019884) #11	ENSSTOG00000020518 ##12	HSD11B1L (ENSSTOG00000027416) #13	MICOS13 (ENSSTOG00000002814) #14	SAFB (ENSSTOG00000002783) #15	ENSSTOG00000002758 #16	ENSSTOG00000029515 #17	ZNRF4 (ENSSTOG00000022733)	PTPRS (ENSSTOG00000028354) #18	KDM4B (ENSSTOG00000022348) #19	UHRF1 (ENSSTOG00000025553) #20	ARRDC5 (ENSSTOG00000027289) #21	PLIN3 (ENSSTOG00000027863) #22	FEM1A (ENSSTOG00000002965) #24	DPP9 (ENSSTOG00000009879) #25	MYDGF (ENSSTOG00000009868) #26	TNFAIP8L1 (ENSSTOG00000009863) #27	SEMA6B (ENSSTOG00000021893) #28	LRG1 (ENSSTOG00000003007) #29	PLIN5 (ENSSTOG00000022250) #30	ENSSTOG00000030331	HDGFL2 (ENSSTOG00000007383) #32	UBXN6 (ENSSTOG00000014906) #33	CHAF1A (ENSSTOG00000014889) #34	SH3GL1 (ENSSTOG00000008579) #35	MPND (ENSSTOG00000008666) #36	STAP2 (ENSSTOG00000022594) #37	FSD1 (ENSSTOG00000008010)
Alpin marmot	MODERN SPECIES	88	CAPS (ENSMMMG00000019062)	VMAC (ENSMMMG00000019061) #8	NDUFA11 (ENSMMMG00000019059) #7	NRTN (ENSMMMG00000019052)	DUS3L (ENSMMMG00000019016)	LONP1 (ENSMMMG00000018859) #11	HSD11B1L (ENSMMMG00000018842) #13	MICOS13 (ENSMMMG00000018836) #14	SAFB (ENSMMMG00000018807) #15	SAFB2 (ENSMMMG00000018701) #16	ENSMMMG00000018676 #18	ENSMMMG00000018660 #18	KDM4B (ENSMMMG00000018611) #19	UHRF1 (ENSMMMG00000018568) #20	ENSMMMG00000018563 #21	PLIN3 (ENSMMMG00000018498) #22	FEM1A (ENSMMMG00000018489) #24	DPP9 (ENSMMMG00000018462) #25	MYDGF (ENSMMMG00000018460) #26	ENSMMMG00000018426 #28	LRG1 (ENSMMMG00000018424) #29	ENSMMMG00000018410 #30	HDGFL2 (ENSMMMG00000018325) #32	UBXN6 (ENSMMMG00000018303) #33	CHAF1A (ENSMMMG00000018263) #34	SH3GL1 (ENSMMMG00000018246) #35	MPND (ENSMMMG00000018208) #36	STAP2 (ENSMMMG00000018200) #37	FSD1 (ENSMMMG00000018181)	SHD (ENSMMMG00000018157)	YJU2 (ENSMMMG00000018139)
Eurasian red squirrel	MODERN SPECIES	7	NRTN (ENSSVLG00005021968)	DUS3L (ENSSVLG00005021792)	PRR22 (ENSSVLG00005021755)	LONP1 (ENSSVLG00005021189) #11	ENSSVLG00005021082 ##12	HSD11B1L (ENSSVLG00005020980) #13	MICOS13 (ENSSVLG00005020922) #14	SAFB (ENSSVLG00005020852) #15	SAFB2 (ENSSVLG00005020804) #16	ENSSVLG00005020769 #17	ENSSVLG00005020738	PTPRS (ENSSVLG00005020607) #18	KDM4B (ENSSVLG00005020468) #19	UHRF1 (ENSSVLG00005020117) #20	ARRDC5 (ENSSVLG00005019968) #21	PLIN3 (ENSSVLG00005019930) #22	TICAM1 (ENSSVLG00005019910) #23	FEM1A (ENSSVLG00005019898) #24	DPP9 (ENSSVLG00005019665) #25	MYDGF (ENSSVLG00005019396) #26	TNFAIP8L1 (ENSSVLG00005019332) #27	SEMA6B (ENSSVLG00005019159) #28	LRG1 (ENSSVLG00005019035) #29	PLIN5 (ENSSVLG00005018954) #30	PLIN4 (ENSSVLG00005018704) #31	HDGFL2 (ENSSVLG00005018647) #32	UBXN6 (ENSSVLG00005018509) #33	CHAF1A (ENSSVLG00005018270) #34	SH3GL1 (ENSSVLG00005018172) #35	MPND (ENSSVLG00005017709) #36	ENSSVLG00005017600
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00940000162714 #10	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Naked mole-rat female	MODERN SPECIES	21	NRTN (ENSHGLG00000014364)	DUS3L (ENSHGLG00000013475)	PRR22 (ENSHGLG00000043073)	CATSPERD (ENSHGLG00000032633) #10	LONP1 (ENSHGLG00000013886) #11	ENSHGLG00000013869 #12	MICOS13 (ENSHGLG00000032110) #14	ENSHGLG00000015883 #15	SAFB2 (ENSHGLG00000017442) #16	ENSHGLG00000044379	ENSHGLG00000017464 #17	ENSHGLG00000037010	KDM4B (ENSHGLG00000013802) #19	UHRF1 (ENSHGLG00000015739) #20	ARRDC5 (ENSHGLG00000014076) #21	PLIN3 (ENSHGLG00000050405) #22	FEM1A (ENSHGLG00000041190) #24	DPP9 (ENSHGLG00000006649) #25	MYDGF (ENSHGLG00000006727) #26	TNFAIP8L1 (ENSHGLG00000040405) #27	SEMA6B (ENSHGLG00000008078) #28	LRG1 (ENSHGLG00000008746) #29	PLIN5 (ENSHGLG00000009083) #30	PLIN4 (ENSHGLG00000035695) #31	HDGFL2 (ENSHGLG00000010821) #32	UBXN6 (ENSHGLG00000011971) #33	ENSHGLG00000035324	CHAF1A (ENSHGLG00000005439) #34	SH3GL1 (ENSHGLG00000005623) #35	MPND (ENSHGLG00000006669) #36	STAP2 (ENSHGLG00000008727) #37
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000163125	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Guinea pig	MODERN SPECIES	266									LONP1 (ENSCPOG00000022470) #11	RPL36 (ENSCPOG00000022839) #12	MICOS13 (ENSCPOG00000019813) #14	SAFB (ENSCPOG00000026322) #15	SAFB2 (ENSCPOG00000011394) #16	UHRF1 (ENSCPOG00000013885) #20	ARRDC5 (ENSCPOG00000019363) #21	PLIN3 (ENSCPOG00000035732) #22	TICAM1 (ENSCPOG00000006486) #23	FEM1A (ENSCPOG00000002697) #24	DPP9 (ENSCPOG00000023894) #25
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00390000012434 #7	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00390000016128	ENSGT00530000063553.b.a #11	ENSGT00390000011943.a.a.a.b #12	ENSGT00390000002629 #14	ENSGT00940000155916 #15	ENSGT00940000161482 #16	ENSGT01010000222837 #17	ENSGT00940000163061	ENSGT00940000153617.A.b #18	ENSGT00940000159248 #19	ENSGT00390000008296.a #20	ENSGT00510000049183 #21	ENSGT00950000182920.b.a.a.c.a.b.a #22	ENSGT00940000162411 #23	ENSGT00940000161210 #24	ENSGT00940000158174 #25	ENSGT00390000000777 #26	ENSGT00390000003488.a.b.a #27	ENSGT00940000159170 #28	ENSGT00940000162412 #29	ENSGT00950000182920.b.a.a.c.b #30	ENSGT00950000182920.b.a.a.c.a.b.b #31	ENSGT00940000153942.a.f #32	ENSGT00940000157273 #33	ENSGT00440000034888 #34	ENSGT00940000154737.c #35	ENSGT00940000160191 #36	ENSGT00530000063841.b #37
Long-tailed chinchilla	MODERN SPECIES	202	CAPS (ENSCLAG00000013758)	VMAC (ENSCLAG00000012168) #8	NDUFA11 (ENSCLAG00000008043) #7	DUS3L (ENSCLAG00000008470)	PRR22 (ENSCLAG00000009039)	LONP1 (ENSCLAG00000007239) #11	RPL36 (ENSCLAG00000012455) #12	MICOS13 (ENSCLAG00000009496) #14	SAFB (ENSCLAG00000007734) #15	ENSCLAG00000009742 #16	ENSCLAG00000007870 #17	ENSCLAG00000008007	PTPRS (ENSCLAG00000006868) #18	KDM4B (ENSCLAG00000007020) #19	ARRDC5 (ENSCLAG00000006231) #21	PLIN3 (ENSCLAG00000006302) #22	TICAM1 (ENSCLAG00000017975) #23	FEM1A (ENSCLAG00000006945) #24	DPP9 (ENSCLAG00000008590) #25	MYDGF (ENSCLAG00000016185) #26	TNFAIP8L1 (ENSCLAG00000009190) #27	SEMA6B (ENSCLAG00000009399) #28	LRG1 (ENSCLAG00000011801) #29	PLIN5 (ENSCLAG00000015835) #30	HDGFL2 (ENSCLAG00000008598) #32	UBXN6 (ENSCLAG00000010885) #33	CHAF1A (ENSCLAG00000008702) #34	SH3GL1 (ENSCLAG00000006871) #35	MPND (ENSCLAG00000007417) #36	STAP2 (ENSCLAG00000008850) #37	FSD1 (ENSCLAG00000013151)
Degu	MODERN SPECIES	91	VMAC (ENSODEG00000014819) #8	NDUFA11 (ENSODEG00000015123) #7	NRTN (ENSODEG00000014997)	DUS3L (ENSODEG00000015771)	PRR22 (ENSODEG00000015287)	LONP1 (ENSODEG00000015069) #11	ENSODEG00000017182 #12	MICOS13 (ENSODEG00000016327) #14	SAFB (ENSODEG00000014838) #15	SAFB2 (ENSODEG00000014751) #16	ENSODEG00000015112	PTPRS (ENSODEG00000015678) #18	KDM4B (ENSODEG00000014383) #19	UHRF1 (ENSODEG00000015557) #20	ARRDC5 (ENSODEG00000014652) #21	PLIN3 (ENSODEG00000014389) #22	TICAM1 (ENSODEG00000014706) #23	FEM1A (ENSODEG00000014717) #24	ENSODEG00000014241	DPP9 (ENSODEG00000014408) #25	MYDGF (ENSODEG00000014093) #26	TNFAIP8L1 (ENSODEG00000020424) #27	SEMA6B (ENSODEG00000016032) #28	PLIN5 (ENSODEG00000014740) #30	PLIN4 (ENSODEG00000015715) #31	ENSODEG00000015495 #32	UBXN6 (ENSODEG00000015912) #33	CHAF1A (ENSODEG00000015861) #34	SH3GL1 (ENSODEG00000015344) #35	MPND (ENSODEG00000014317) #36	STAP2 (ENSODEG00000015068) #37