Glires	ANCESTRAL SPECIES	20	ENSGT00390000012138.a.b.t	ENSGT00940000158008	ENSGT00940000153446.a.a	ENSGT00940000154181.a	ENSGT00940000162862	ENSGT00390000018110	ENSGT00940000157222	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00390000008778	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Rodentia	ANCESTRAL SPECIES	19	ENSGT00390000012138.a.b.t.ab	ENSGT00940000158008	ENSGT00940000153446.a.a	ENSGT00940000154181.a	ENSGT00940000162862	ENSGT00390000018110	ENSGT00940000157222	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00390000008778	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Rodentia_B	ANCESTRAL SPECIES	17	ENSGT00390000012138.a.b.t.ab	ENSGT00940000158008	ENSGT00940000153446.a.a	ENSGT00940000154181.a	ENSGT00940000162862	ENSGT00390000018110	ENSGT00940000157222	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00390000008778	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Myomorpha	ANCESTRAL SPECIES	18	ENSGT00940000158008	ENSGT00940000153446.a.a	ENSGT00940000154181.a	ENSGT00940000162862	ENSGT00390000018110	ENSGT00950000182878.b.b.o	ENSGT00940000157222	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00390000008778	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Muroidea	ANCESTRAL SPECIES	14	ENSGT00940000158008	ENSGT00940000153446.a.a	ENSGT00940000154181.a	ENSGT00940000162862	ENSGT00390000018110	ENSGT00950000182878.b.b.o	ENSGT00940000157222	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00390000008778	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00520000055567.a.a.b	ENSGT00940000153141.B.a	ENSGT00940000154502	ENSGT00940000155059 #7	ENSGT00940000159497 #8	ENSGT00940000158863 #9	ENSGT00940000153886.a.b.f #11	ENSGT00940000153649.A #12	ENSGT00940000159947 #13	ENSGT00940000156304 #14	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00390000008778	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00520000055567.a.a.b	ENSGT00940000153141.B.a	ENSGT00940000154502	ENSGT00940000155059 #7	ENSGT00940000159497 #8	ENSGT00940000158863 #9	ENSGT00940000153886.a.b.f #11	ENSGT00940000153649.A #12	ENSGT00940000159947 #13	ENSGT00940000156304 #14	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00390000008778	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Cricetidae_B	ANCESTRAL SPECIES	50	ENSGT00520000055567.a.a.b	ENSGT00940000153141.B.a	ENSGT00940000154502	ENSGT00940000155059 #7	ENSGT00940000159497 #8	ENSGT00940000158863 #9	ENSGT00940000153886.a.b.f #11	ENSGT00940000153649.A #12	ENSGT00940000159947 #13	ENSGT00940000156304 #14	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00390000008778	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Northern American deer mouse	MODERN SPECIES	11	Nsmaf (ENSPEMG00000019696) #7	Tox (ENSPEMG00000019966) #8	Car8 (ENSPEMG00000019908) #9	ENSPEMG00000012575 #10	Rab2a (ENSPEMG00000001678) #11	Chd7 (ENSPEMG00000023028) #12	Clvs1 (ENSPEMG00000030182) #13	Asph (ENSPEMG00000030609) #14	Gdf6 (ENSPEMG00000005989) #15	ENSPEMG00000028934 #16	ENSPEMG00000027337 #17	Cfap418 (ENSPEMG00000028977) #18	Plekhf2 (ENSPEMG00000013943) #19	Ndufaf6 (ENSPEMG00000018473) #20	Trp53inp1 (ENSPEMG00000029728) #21	Ccne2 (ENSPEMG00000008874) #22	Ints8 (ENSPEMG00000007652) #23	Dpy19l4 (ENSPEMG00000002369) #24	Esrp1 (ENSPEMG00000020410) #25	Virma (ENSPEMG00000002167) #26	Rad54b (ENSPEMG00000012133) #27	Gem (ENSPEMG00000012652) #28	ENSPEMG00000013625 #29	Cdh17 (ENSPEMG00000018197) #30	Pdp1 (ENSPEMG00000028541) #31	Tmem67 (ENSPEMG00000017838) #32	ENSPEMG00000008279 #33	Cibar1 (ENSPEMG00000010608) #34	ENSPEMG00000030089 #35	ENSPEMG00000028954 #36	ENSPEMG00000028937 #37
Prairie vole	MODERN SPECIES	355	Nsmaf (ENSMOCG00000018628) #7	Tox (ENSMOCG00000013368) #8	Car8 (ENSMOCG00000018985) #9	Rab2a (ENSMOCG00000014140) #11	Chd7 (ENSMOCG00000011408) #12	ENSMOCG00000010657	Clvs1 (ENSMOCG00000013201) #13	Asph (ENSMOCG00000013819) #14	Gdf6 (ENSMOCG00000021011) #15	ENSMOCG00000000256	Cfap418 (ENSMOCG00000019280) #18	ENSMOCG00000002359	Plekhf2 (ENSMOCG00000002768) #19	Ndufaf6 (ENSMOCG00000015272) #20	Trp53inp1 (ENSMOCG00000021132) #21	Ccne2 (ENSMOCG00000001638) #22	Ints8 (ENSMOCG00000017112) #23	Dpy19l4 (ENSMOCG00000007197) #24	Esrp1 (ENSMOCG00000013567) #25	Virma (ENSMOCG00000015388) #26	Rad54b (ENSMOCG00000020035) #27	Fsbp (ENSMOCG00000008704)	Gem (ENSMOCG00000006722) #28	Cdh17 (ENSMOCG00000010844) #30	Pdp1 (ENSMOCG00000014340) #31	Tmem67 (ENSMOCG00000011860) #32	ENSMOCG00000005603 #33	Cibar1 (ENSMOCG00000011538) #34	Triqk (ENSMOCG00000007927)	Runx1t1 (ENSMOCG00000017694)	Slc26a7 (ENSMOCG00000009692)
Cricetinae	ANCESTRAL SPECIES	31	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00390000008778	ENSGT00940000156966 #27	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Chinese hamster chok1gshd	MODERN SPECIES	111	Ythdf3 (ENSCGRG00001021204)	ENSCGRG00001019881	Bhlhe22 (ENSCGRG00001008953)	ENSCGRG00001022412	ENSCGRG00001022769	Armc1 (ENSCGRG00001009936)	Mtfr1 (ENSCGRG00001014598)	Pde7a (ENSCGRG00001016785)	Gdf6 (ENSCGRG00001023428) #15	ENSCGRG00001024201	Cfap418 (ENSCGRG00001004508) #18	Plekhf2 (ENSCGRG00001005895) #19	Ndufaf6 (ENSCGRG00001019248) #20	ENSCGRG00001020796	Trp53inp1 (ENSCGRG00001021212) #21	Ccne2 (ENSCGRG00001022482) #22	Ints8 (ENSCGRG00001004108) #23	Dpy19l4 (ENSCGRG00001004221) #24	Esrp1 (ENSCGRG00001013860) #25	Virma (ENSCGRG00001018853) #26	Rad54b (ENSCGRG00001020184) #27	Fsbp (ENSCGRG00001023519)	Gem (ENSCGRG00001023980) #28
Golden Hamster	MODERN SPECIES	622	Nkain3 (ENSMAUG00000020121)	Ggh (ENSMAUG00000018444)	Ttpa (ENSMAUG00000017120)	Ythdf3 (ENSMAUG00000012560)	ENSMAUG00000020148	Bhlhe22 (ENSMAUG00000010666)	Cyp7b1 (ENSMAUG00000020201)	Armc1 (ENSMAUG00000019022)	Mtfr1 (ENSMAUG00000018456)	Pde7a (ENSMAUG00000001828)	Gdf6 (ENSMAUG00000013204) #15	Cfap418 (ENSMAUG00000012621) #18	Plekhf2 (ENSMAUG00000021429) #19	Ndufaf6 (ENSMAUG00000016511) #20	Trp53inp1 (ENSMAUG00000013323) #21	Ccne2 (ENSMAUG00000011678) #22	Ints8 (ENSMAUG00000009763) #23	Dpy19l4 (ENSMAUG00000009087) #24	Esrp1 (ENSMAUG00000017300) #25	Virma (ENSMAUG00000007195) #26	Fsbp (ENSMAUG00000021489)	Rad54b (ENSMAUG00000013586) #27	Gem (ENSMAUG00000006962) #28	Cdh17 (ENSMAUG00000009983) #30	Tmem67 (ENSMAUG00000001046) #32	ENSMAUG00000021752 #33	Cibar1 (ENSMAUG00000009551) #34	Triqk (ENSMAUG00000012998)	Cntn4 (ENSMAUG00000009508)	Il5ra (ENSMAUG00000021101)	Trnt1 (ENSMAUG00000020707)
Murinae	ANCESTRAL SPECIES	2	ENSGT00520000055567.a.a.b	ENSGT00940000153141.B.a	ENSGT00940000154502	ENSGT00940000155059 #7	ENSGT00940000159497 #8	ENSGT00940000158863 #9	ENSGT00940000153886.a.b.f #11	ENSGT00940000153649.A #12	ENSGT00940000159947 #13	ENSGT00940000156304 #14	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00390000008778	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Mus	ANCESTRAL SPECIES	3	ENSGT00520000055567.a.a.b	ENSGT00940000153141.B.a	ENSGT00940000154502	ENSGT00940000155059 #7	ENSGT00940000159497 #8	ENSGT00940000158863 #9	ENSGT00940000153886.a.b.f #11	ENSGT00940000153649.A #12	ENSGT00940000159947 #13	ENSGT00940000156304 #14	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00390000008778	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Mus_A	ANCESTRAL SPECIES	3	ENSGT00520000055567.a.a.b	ENSGT00940000153141.B.a	ENSGT00940000154502	ENSGT00940000155059 #7	ENSGT00940000159497 #8	ENSGT00940000158863 #9	ENSGT00940000153886.a.b.f #11	ENSGT00940000153649.A #12	ENSGT00940000159947 #13	ENSGT00940000156304 #14	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00390000008778	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Mus_B	ANCESTRAL SPECIES	22	ENSGT00520000055567.a.a.b	ENSGT00940000153141.B.a	ENSGT00940000154502	ENSGT00940000155059 #7	ENSGT00940000159497 #8	ENSGT00940000158863 #9	ENSGT00940000153886.a.b.f #11	ENSGT00940000153649.A #12	ENSGT00940000159947 #13	ENSGT00940000156304 #14	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00390000008778	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322.d #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Mus_C	ANCESTRAL SPECIES	2	ENSGT00520000055567.a.a.b	ENSGT00940000153141.B.a	ENSGT00940000154502	ENSGT00940000155059 #7	ENSGT00940000159497 #8	ENSGT00940000158863 #9	ENSGT00940000153886.a.b.f #11	ENSGT00940000153649.A #12	ENSGT00940000159947 #13	ENSGT00940000156304 #14	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00390000008778	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322.d #33	ENSGT00390000010285.c #34	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b	ENSGT00940000164066
Steppe mouse	MODERN SPECIES	2764											Cfap418 (ENSMSIG00000015081) #18	Plekhf2 (ENSMSIG00000015105) #19	Ndufaf6 (ENSMSIG00000015127) #20	ENSMSIG00000015158	Trp53inp1 (ENSMSIG00000015170) #21	Ccne2 (ENSMSIG00000015176) #22	Ints8 (ENSMSIG00000015213) #23	Dpy19l4 (ENSMSIG00000015331) #24	Esrp1 (ENSMSIG00000015467) #25	Virma (ENSMSIG00000015653) #26	Rad54b (ENSMSIG00000015787) #27	ENSMSIG00000015872
spretus	MODERN SPECIES	13	Ubxn2b (MGP_SPRETEiJ_G0026738)	Cyp7a1 (MGP_SPRETEiJ_G0026739)	Sdcbp (MGP_SPRETEiJ_G0026740)	Nsmaf (MGP_SPRETEiJ_G0026741) #7	Tox (MGP_SPRETEiJ_G0026742) #8	Car8 (MGP_SPRETEiJ_G0026743) #9	Rab2a (MGP_SPRETEiJ_G0026744) #11	Chd7 (MGP_SPRETEiJ_G0026745) #12	Clvs1 (MGP_SPRETEiJ_G0026746) #13	Asph (MGP_SPRETEiJ_G0026747) #14	Gdf6 (MGP_SPRETEiJ_G0026748) #15	Cfap418 (MGP_SPRETEiJ_G0026749) #18	Plekhf2 (MGP_SPRETEiJ_G0026750) #19	Ndufaf6 (MGP_SPRETEiJ_G0026751) #20	Trp53inp1 (MGP_SPRETEiJ_G0026752) #21	Ccne2 (MGP_SPRETEiJ_G0026753) #22	Ints8 (MGP_SPRETEiJ_G0026754) #23	Dpy19l4 (MGP_SPRETEiJ_G0026755) #24	Esrp1 (MGP_SPRETEiJ_G0026756) #25	Virma (MGP_SPRETEiJ_G0026757) #26	Rad54b (MGP_SPRETEiJ_G0026758) #27	Fsbp (MGP_SPRETEiJ_G0026759)	Gem (MGP_SPRETEiJ_G0026760) #28	Cdh17 (MGP_SPRETEiJ_G0026761) #30	Pdp1 (MGP_SPRETEiJ_G0026762) #31	MGP_SPRETEiJ_G0026763	Tmem67 (MGP_SPRETEiJ_G0026764) #32	MGP_SPRETEiJ_G0026765 #33	MGP_SPRETEiJ_G0026766 #33	Cibar1 (MGP_SPRETEiJ_G0026767) #34	Runx1t1 (MGP_SPRETEiJ_G0026768)
Mouse	MODERN SPECIES	13	Ubxn2b (ENSMUSG00000028243)	Cyp7a1 (ENSMUSG00000028240)	Sdcbp (ENSMUSG00000028249)	Nsmaf (ENSMUSG00000028245) #7	Tox (ENSMUSG00000041272) #8	Car8 (ENSMUSG00000041261) #9	Rab2a (ENSMUSG00000047187) #11	Chd7 (ENSMUSG00000041235) #12	Clvs1 (ENSMUSG00000041216) #13	Asph (ENSMUSG00000028207) #14	Gdf6 (ENSMUSG00000051279) #15	Cfap418 (ENSMUSG00000059482) #18	Plekhf2 (ENSMUSG00000049969) #19	Ndufaf6 (ENSMUSG00000050323) #20	Trp53inp1 (ENSMUSG00000028211) #21	Ccne2 (ENSMUSG00000028212) #22	Ints8 (ENSMUSG00000040738) #23	Dpy19l4 (ENSMUSG00000045205) #24	Esrp1 (ENSMUSG00000040728) #25	Virma (ENSMUSG00000040720) #26	Rad54b (ENSMUSG00000078773) #27	Fsbp (ENSMUSG00000094595)	Gem (ENSMUSG00000028214) #28	Cdh17 (ENSMUSG00000028217) #30	Pdp1 (ENSMUSG00000049225) #31	Tmem67 (ENSMUSG00000049488) #32	Rbm12b2 (ENSMUSG00000052137) #33	Rbm12b1 (ENSMUSG00000046667) #33	Cibar1 (ENSMUSG00000028218) #34	Triqk (ENSMUSG00000055963)	Runx1t1 (ENSMUSG00000006586)
Ryukyu mouse	MODERN SPECIES	13	Ubxn2b (MGP_CAROLIEiJ_G0025790)	Cyp7a1 (MGP_CAROLIEiJ_G0025791)	Sdcbp (MGP_CAROLIEiJ_G0025792)	Nsmaf (MGP_CAROLIEiJ_G0025793) #7	Tox (MGP_CAROLIEiJ_G0025794) #8	Car8 (MGP_CAROLIEiJ_G0025795) #9	Rab2a (MGP_CAROLIEiJ_G0025796) #11	Chd7 (MGP_CAROLIEiJ_G0025797) #12	Clvs1 (MGP_CAROLIEiJ_G0025798) #13	Asph (MGP_CAROLIEiJ_G0025799) #14	Gdf6 (MGP_CAROLIEiJ_G0025800) #15	Cfap418 (MGP_CAROLIEiJ_G0025801) #18	Plekhf2 (MGP_CAROLIEiJ_G0025802) #19	Ndufaf6 (MGP_CAROLIEiJ_G0025803) #20	Trp53inp1 (MGP_CAROLIEiJ_G0025804) #21	Ccne2 (MGP_CAROLIEiJ_G0025805) #22	Ints8 (MGP_CAROLIEiJ_G0025806) #23	Dpy19l4 (MGP_CAROLIEiJ_G0025807) #24	Esrp1 (MGP_CAROLIEiJ_G0025808) #25	Virma (MGP_CAROLIEiJ_G0025809) #26	Rad54b (MGP_CAROLIEiJ_G0025810) #27	Fsbp (MGP_CAROLIEiJ_G0025811)	Gem (MGP_CAROLIEiJ_G0025812) #28	Cdh17 (MGP_CAROLIEiJ_G0025813) #30	Pdp1 (MGP_CAROLIEiJ_G0025814) #31	Tmem67 (MGP_CAROLIEiJ_G0025815) #32	Cibar1 (MGP_CAROLIEiJ_G0025816) #34	Triqk (MGP_CAROLIEiJ_G0025818)	Runx1t1 (MGP_CAROLIEiJ_G0025819)	Slc26a7 (MGP_CAROLIEiJ_G0025820)	Lrrc69 (MGP_CAROLIEiJ_G0025821)
Shrew mouse	MODERN SPECIES	14	Ubxn2b (MGP_PahariEiJ_G0023913)	Cyp7a1 (MGP_PahariEiJ_G0023914)	Sdcbp (MGP_PahariEiJ_G0023915)	Nsmaf (MGP_PahariEiJ_G0023916) #7	Tox (MGP_PahariEiJ_G0023917) #8	Car8 (MGP_PahariEiJ_G0023918) #9	Rab2a (MGP_PahariEiJ_G0023919) #11	Chd7 (MGP_PahariEiJ_G0023920) #12	Clvs1 (MGP_PahariEiJ_G0023921) #13	Asph (MGP_PahariEiJ_G0023922) #14	Gdf6 (MGP_PahariEiJ_G0023923) #15	Cfap418 (MGP_PahariEiJ_G0023924) #18	Plekhf2 (MGP_PahariEiJ_G0023925) #19	Ndufaf6 (MGP_PahariEiJ_G0023926) #20	Trp53inp1 (MGP_PahariEiJ_G0023927) #21	Ccne2 (MGP_PahariEiJ_G0023928) #22	Ints8 (MGP_PahariEiJ_G0023929) #23	Dpy19l4 (MGP_PahariEiJ_G0023930) #24	Esrp1 (MGP_PahariEiJ_G0023931) #25	Virma (MGP_PahariEiJ_G0023932) #26	Rad54b (MGP_PahariEiJ_G0023933) #27	Fsbp (MGP_PahariEiJ_G0023934)	Gem (MGP_PahariEiJ_G0023935) #28	Cdh17 (MGP_PahariEiJ_G0023936) #30	Pdp1 (MGP_PahariEiJ_G0023937) #31	MGP_PahariEiJ_G0023938	Tmem67 (MGP_PahariEiJ_G0023939) #32	Cibar1 (MGP_PahariEiJ_G0023940) #34	Triqk (MGP_PahariEiJ_G0023941)	Runx1t1 (MGP_PahariEiJ_G0023942)	Slc26a7 (MGP_PahariEiJ_G0023943)
Rat	MODERN SPECIES	15	Nsmaf (ENSRNOG00000010234) #7	Tox (ENSRNOG00000010777) #8	Gm5471 (ENSRNOG00000033979)	Car8 (ENSRNOG00000005669) #9	Rab2a (ENSRNOG00000005963) #11	ENSRNOG00000066526	Chd7 (ENSRNOG00000006689) #12	Clvs1 (ENSRNOG00000006919) #13	Asph (ENSRNOG00000007445) #14	Gdf6 (ENSRNOG00000067800) #15	ENSRNOG00000069549	Cfap418 (ENSRNOG00000026672) #18	Plekhf2 (ENSRNOG00000026662) #19	Ndufaf6 (ENSRNOG00000040040) #20	Tp53inp1 (ENSRNOG00000007964) #21	Ccne2 (ENSRNOG00000008055) #22	Ints8 (ENSRNOG00000008124) #23	Dpy19l4 (ENSRNOG00000025416) #24	Esrp1 (ENSRNOG00000008184) #25	RGD1564278 (ENSRNOG00000065922)	ENSRNOG00000071120	LOC103692302 (ENSRNOG00000063229)	RGD1559441 (ENSRNOG00000067162)	LOC103692301 (ENSRNOG00000070765)	ENSRNOG00000070727	ENSRNOG00000062635	Virma (ENSRNOG00000014664) #26	Fsbp (ENSRNOG00000039949) #27	Gem (ENSRNOG00000015160) #28	Cdh17 (ENSRNOG00000015562) #30	Pdp1 (ENSRNOG00000016180) #31
Upper Galilee mountains blind mole rat	MODERN SPECIES	1407					Sdc2 (ENSNGAG00000018976)	Ptdss1 (ENSNGAG00000017867)	Mterf3 (ENSNGAG00000017410)	Uqcrb (ENSNGAG00000016222)	Gdf6 (ENSNGAG00000010160) #15	ENSNGAG00000003573	Cfap418 (ENSNGAG00000001273) #18	Plekhf2 (ENSNGAG00000017849) #19	ENSNGAG00000001307 ##17	Ndufaf6 (ENSNGAG00000018726) #20	ENSNGAG00000017780 #21	Ccne2 (ENSNGAG00000014470) #22	Ints8 (ENSNGAG00000020796) #23	Dpy19l4 (ENSNGAG00000014494) #24	Esrp1 (ENSNGAG00000022788) #25	Virma (ENSNGAG00000022866) #26	Rad54b (ENSNGAG00000017537) #27	Gem (ENSNGAG00000014843) #28	Cdh17 (ENSNGAG00000003508) #30	Pdp1 (ENSNGAG00000000758) #31	Tmem67 (ENSNGAG00000017441) #32	ENSNGAG00000002801 #33	ENSNGAG00000015508 #34	ENSNGAG00000002585	Triqk (ENSNGAG00000013563)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	49	Nupl2 (ENSJJAG00000016370)	Gpnmb (ENSJJAG00000016316)	ENSJJAG00000024157	Igf2bp3 (ENSJJAG00000011174)	ENSJJAG00000007586	Tra2a (ENSJJAG00000022787)	ENSJJAG00000010858	Ccdc126 (ENSJJAG00000011314)	Fam221a (ENSJJAG00000023814)	Stk31 (ENSJJAG00000010464)	Npy (ENSJJAG00000002520)	ENSJJAG00000013890 #22	Pals2 (ENSJJAG00000001765)	ENSJJAG00000023312	Osbpl3 (ENSJJAG00000017704)	ENSJJAG00000016917 #22	ENSJJAG00000004363	4921507P07Rik (ENSJJAG00000011772)	Npvf (ENSJJAG00000023289)	Nfe2l3 (ENSJJAG00000013672)	ENSJJAG00000018731	ENSJJAG00000014919	Snx10 (ENSJJAG00000010400)	Skap2 (ENSJJAG00000009704)	Hoxa1 (ENSJJAG00000023032)	Hoxa2 (ENSJJAG00000021712)	ENSJJAG00000021517	Hoxa5 (ENSJJAG00000011757)	Hoxa6 (ENSJJAG00000017936)	Hoxa3 (ENSJJAG00000014001)	Hoxa7 (ENSJJAG00000001940)
Lesser Egyptian jerboa	MODERN SPECIES	49	ENSJJAG00000012041	Tomm7 (ENSJJAG00000015481)	Hycc1 (ENSJJAG00000010769)	Klhl7 (ENSJJAG00000020404)	Nupl2 (ENSJJAG00000016370)	Gpnmb (ENSJJAG00000016316)	ENSJJAG00000024157	Igf2bp3 (ENSJJAG00000011174)	ENSJJAG00000007586	Tra2a (ENSJJAG00000022787)	ENSJJAG00000010858	Ccdc126 (ENSJJAG00000011314)	Fam221a (ENSJJAG00000023814)	Stk31 (ENSJJAG00000010464)	Npy (ENSJJAG00000002520)	ENSJJAG00000013890 #22	Pals2 (ENSJJAG00000001765)	ENSJJAG00000023312	Osbpl3 (ENSJJAG00000017704)	ENSJJAG00000016917 #22	ENSJJAG00000004363	4921507P07Rik (ENSJJAG00000011772)	Npvf (ENSJJAG00000023289)	Nfe2l3 (ENSJJAG00000013672)	ENSJJAG00000018731	ENSJJAG00000014919	Snx10 (ENSJJAG00000010400)	Skap2 (ENSJJAG00000009704)	Hoxa1 (ENSJJAG00000023032)	Hoxa2 (ENSJJAG00000021712)	ENSJJAG00000021517
Lesser Egyptian jerboa	MODERN SPECIES	61	Trim14 (ENSJJAG00000019629)	Nans (ENSJJAG00000017140)	ENSJJAG00000018447	Trmo (ENSJJAG00000013904)	Xpa (ENSJJAG00000021732)	Sdc2 (ENSJJAG00000019670)	Ptdss1 (ENSJJAG00000020867)	ENSJJAG00000022904	ENSJJAG00000011745	Uqcrb (ENSJJAG00000019658)	Gdf6 (ENSJJAG00000016433) #15	ENSJJAG00000022813	Ndufaf6 (ENSJJAG00000021214) #20	ENSJJAG00000004025	Trp53inp1 (ENSJJAG00000000693) #21	ENSJJAG00000008698 #22	Ints8 (ENSJJAG00000006447) #23	Dpy19l4 (ENSJJAG00000010845) #24	Esrp1 (ENSJJAG00000002006) #25	Virma (ENSJJAG00000024245) #26	Rad54b (ENSJJAG00000010314) #27	Gem (ENSJJAG00000024345) #28	Cdh17 (ENSJJAG00000011121) #30	Tmem67 (ENSJJAG00000015625) #32	ENSJJAG00000004165 #33	Cibar1 (ENSJJAG00000023978) #34	Triqk (ENSJJAG00000017357)	Slc26a7 (ENSJJAG00000007243)	ENSJJAG00000010380	Calb1 (ENSJJAG00000009685)	Nbn (ENSJJAG00000018109)
Kangaroo rat	MODERN SPECIES	336	Matn2 (ENSDORG00000001226)	Laptm4b (ENSDORG00000026371)	Mtdh (ENSDORG00000004411)	Tspyl5 (ENSDORG00000015407)	Cpq (ENSDORG00000015406)	ENSDORG00000024009	Sdc2 (ENSDORG00000023682)	Ptdss1 (ENSDORG00000010478)	Mterf3 (ENSDORG00000010477)	ENSDORG00000029076	Gdf6 (ENSDORG00000015302) #15	Cfap418 (ENSDORG00000003246) #18	Plekhf2 (ENSDORG00000027911) #19	Ndufaf6 (ENSDORG00000012426) #20	Trp53inp1 (ENSDORG00000023784) #21	Ccne2 (ENSDORG00000014957) #22	Ints8 (ENSDORG00000014954) #23	Dpy19l4 (ENSDORG00000004016) #24	Esrp1 (ENSDORG00000011987) #25	ENSDORG00000024142	Virma (ENSDORG00000002324) #26	Rad54b (ENSDORG00000002492) #27	Fsbp (ENSDORG00000024906)	Gem (ENSDORG00000003903) #28	Pdp1 (ENSDORG00000015533) #31	Tmem67 (ENSDORG00000004149) #32	ENSDORG00000024034 #33	Cibar1 (ENSDORG00000028815) #34	Triqk (ENSDORG00000028174)	Runx1t1 (ENSDORG00000013545)	ENSDORG00000024490
Rodentia_A	ANCESTRAL SPECIES	18	ENSGT00390000012138.a.b.t.ab	ENSGT00940000158008	ENSGT00940000153446.a.a	ENSGT00940000154181.a	ENSGT00940000162862	ENSGT00390000018110	ENSGT00940000157222	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00390000008778	ENSGT00940000156966 #27	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Sciuridae	ANCESTRAL SPECIES	17	ENSGT00390000012138.a.b.s.a.b	ENSGT00940000158008	ENSGT00940000153446.a.a	ENSGT00940000154181.a	ENSGT00940000162862	ENSGT00390000018110	ENSGT00940000157222	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00390000008778	ENSGT00940000156966 #27	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT01030000234950	ENSGT00390000017350	ENSGT00950000183176.b.f
Marmotini	ANCESTRAL SPECIES	10	ENSGT00940000158008	ENSGT00940000153446.a.a	ENSGT00940000154181.a	ENSGT00940000162862	ENSGT00390000018110	ENSGT00940000157222	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00950000183087.A.a.a.b	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00390000008778	ENSGT00940000156966 #27	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Marmotini_b	ANCESTRAL SPECIES	6	ENSGT00940000158008	ENSGT00940000153446.a.a	ENSGT00940000154181.a	ENSGT00940000162862	ENSGT00390000018110	ENSGT00940000157222	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00950000183087.A.a.a.b	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00390000008778	ENSGT00940000156966 #27	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Squirrel	MODERN SPECIES	144											CFAP418 (ENSSTOG00000030899) #18	PLEKHF2 (ENSSTOG00000007760) #19	ENSSTOG00000031480	NDUFAF6 (ENSSTOG00000029178) #20	TP53INP1 (ENSSTOG00000004462) #21	CCNE2 (ENSSTOG00000004435) #22	INTS8 (ENSSTOG00000004379) #23	DPY19L4 (ENSSTOG00000014342) #24	ESRP1 (ENSSTOG00000014330) #25	VIRMA (ENSSTOG00000010804) #26	FSBP (ENSSTOG00000010801)	RAD54B (ENSSTOG00000010791) #27	GEM (ENSSTOG00000010786) #28	CDH17 (ENSSTOG00000002021) #30	PDP1 (ENSSTOG00000028703) #31	TMEM67 (ENSSTOG00000010296) #32	RBM12B (ENSSTOG00000027445) #33	CIBAR1 (ENSSTOG00000010284) #34	TRIQK (ENSSTOG00000002731)	RUNX1T1 (ENSSTOG00000002287)	SLC26A7 (ENSSTOG00000000314)
Arctic ground squirrel	MODERN SPECIES	1	LAPTM4B (ENSUPAG00010013282)	MTDH (ENSUPAG00010013325)	TSPYL5 (ENSUPAG00010013417)	CPQ (ENSUPAG00010013448)	SDC2 (ENSUPAG00010013453)	PTDSS1 (ENSUPAG00010013461)	MTERF3 (ENSUPAG00010013471)	ENSUPAG00010013496	GDF6 (ENSUPAG00010013503) #15	ENSUPAG00010013507	CFAP418 (ENSUPAG00010013512) #18	ENSUPAG00010013522	NDUFAF6 (ENSUPAG00010013528) #20	ENSUPAG00010013541	TP53INP1 (ENSUPAG00010013560) #21	CCNE2 (ENSUPAG00010013567) #22	INTS8 (ENSUPAG00010013609) #23	DPY19L4 (ENSUPAG00010013851) #24	ESRP1 (ENSUPAG00010013887) #25	VIRMA (ENSUPAG00010013956) #26	RAD54B (ENSUPAG00010013994) #27	FSBP (ENSUPAG00010014019)	GEM (ENSUPAG00010014039) #28	CDH17 (ENSUPAG00010014050) #30	PDP1 (ENSUPAG00010014089) #31	TMEM67 (ENSUPAG00010014102) #32	RBM12B (ENSUPAG00010014125) #33	CIBAR1 (ENSUPAG00010014134) #34	ENSUPAG00010014163	RUNX1T1 (ENSUPAG00010014181)	SLC26A7 (ENSUPAG00010015342)
Alpin marmot	MODERN SPECIES	16			TSPYL5 (ENSMMMG00000008584)	CPQ (ENSMMMG00000008567)	ENSMMMG00000008536	PTDSS1 (ENSMMMG00000008511)	MTERF3 (ENSMMMG00000008506)	UQCRB (ENSMMMG00000008500)	GDF6 (ENSMMMG00000008496) #15	CFAP418 (ENSMMMG00000008466) #18	ENSMMMG00000008450	PLEKHF2 (ENSMMMG00000008447) #19	ENSMMMG00000008444	NDUFAF6 (ENSMMMG00000008438) #20	TP53INP1 (ENSMMMG00000008423) #21	CCNE2 (ENSMMMG00000008373) #22	INTS8 (ENSMMMG00000007978) #23	DPY19L4 (ENSMMMG00000007948) #24	ESRP1 (ENSMMMG00000007808) #25	ENSMMMG00000007791	VIRMA (ENSMMMG00000007702) #26	FSBP (ENSMMMG00000007694)	RAD54B (ENSMMMG00000007647) #27	GEM (ENSMMMG00000007618) #28	CDH17 (ENSMMMG00000007567) #30	PDP1 (ENSMMMG00000007532) #31	TMEM67 (ENSMMMG00000007499) #32	RBM12B (ENSMMMG00000007433) #33	CIBAR1 (ENSMMMG00000007347) #34	TRIQK (ENSMMMG00000007334)	RUNX1T1 (ENSMMMG00000007235)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES		LAPTM4B (ENSSVLG00005002108)	ENSSVLG00005002092	ENSSVLG00005002083	ENSSVLG00005002034	TSPYL5 (ENSSVLG00005002014)	CPQ (ENSSVLG00005001998)	SDC2 (ENSSVLG00005001979)	PTDSS1 (ENSSVLG00005001955)	MTERF3 (ENSSVLG00005001923)	ENSSVLG00005001896	GDF6 (ENSSVLG00005001881) #15	CFAP418 (ENSSVLG00005001864) #18	ENSSVLG00005001851 #19	ENSSVLG00005001825 #20	TP53INP1 (ENSSVLG00005001805) #21	ENSSVLG00005001753 #22	INTS8 (ENSSVLG00005001719) #23	DPY19L4 (ENSSVLG00005001687) #24	ESRP1 (ENSSVLG00005001584) #25	VIRMA (ENSSVLG00005001519) #26	RAD54B (ENSSVLG00005001462) #27	GEM (ENSSVLG00005001435) #28	CDH17 (ENSSVLG00005001288) #30	PDP1 (ENSSVLG00005001123) #31	TMEM67 (ENSSVLG00005001049) #32	RBM12B (ENSSVLG00005001004) #33	CIBAR1 (ENSSVLG00005000981) #34	ENSSVLG00005000951	ENSSVLG00005000943	ENSSVLG00005000855	SLC26A7 (ENSSVLG00005000726)
Eurasian red squirrel	MODERN SPECIES	5	SLC30A3 (ENSSVLG00005025863)	DNAJC5G (ENSSVLG00005025852)	TRIM54 (ENSSVLG00005025846)	UCN (ENSSVLG00005025844)	MPV17 (ENSSVLG00005025836)	GTF3C2 (ENSSVLG00005025819)	EIF2B4 (ENSSVLG00005025809)	SNX17 (ENSSVLG00005025802)	ZNF513 (ENSSVLG00005025796)	ENSSVLG00005025791	NRBP1 (ENSSVLG00005025787)	KRTCAP3 (ENSSVLG00005025779)	IFT172 (ENSSVLG00005025773)	FNDC4 (ENSSVLG00005025764)	GCKR (ENSSVLG00005025756)	ENSSVLG00005025747 #22	ENSSVLG00005025740	ENSSVLG00005025711	ENSSVLG00005025695	ENSSVLG00005025673	SUPT7L (ENSSVLG00005025640)	SLC4A1AP (ENSSVLG00005025630)	MRPL33 (ENSSVLG00005025615)	RBKS (ENSSVLG00005025606)	BABAM2 (ENSSVLG00005025587)	FOSL2 (ENSSVLG00005025575)	PLB1 (ENSSVLG00005025523)	PPP1CB (ENSSVLG00005025485)	SPDYA (ENSSVLG00005025476)	TRMT61B (ENSSVLG00005025465)	ENSSVLG00005025441
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00390000012138.a.b.t.ab	ENSGT00940000158008	ENSGT00940000153446.a.a	ENSGT00940000154181.a	ENSGT00940000162862	ENSGT00390000018110	ENSGT00940000157222	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00390000008778	ENSGT00940000156966 #27	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00390000012138.a.b.t.ab	ENSGT00940000158008	ENSGT00940000153446.a.a	ENSGT00940000154181.a	ENSGT00940000162862	ENSGT00390000018110	ENSGT00940000157222	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00390000008778	ENSGT00940000156966 #27	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Hystricomorpha_b	ANCESTRAL SPECIES	25	ENSGT00390000012138.a.b.t.ab	ENSGT00940000158008	ENSGT00940000153446.a.a	ENSGT00940000154181.a	ENSGT00940000162862	ENSGT00390000018110	ENSGT00940000157222	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00390000008778	ENSGT00940000156966 #27	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT00390000017350	ENSGT00950000183176.b.f	ENSGT01100000263544.c.b
Degu	DUPLICATION
Degu	MODERN SPECIES	175				ENSODEG00000004148	CPQ (ENSODEG00000004178)	SDC2 (ENSODEG00000004200)	PTDSS1 (ENSODEG00000004210)	MTERF3 (ENSODEG00000002232)	GDF6 (ENSODEG00000002393) #15	CFAP418 (ENSODEG00000002430) #18	ENSODEG00000002462	NDUFAF6 (ENSODEG00000002477) #20	ENSODEG00000002493	ENSODEG00000002658	TP53INP1 (ENSODEG00000002683) #21	ENSODEG00000002694 #22	INTS8 (ENSODEG00000002766) #23	ENSODEG00000018890	DPY19L4 (ENSODEG00000003026) #24	ESRP1 (ENSODEG00000002165) #25	ENSODEG00000002361	VIRMA (ENSODEG00000002449) #26	ENSODEG00000018816	ENSODEG00000002650 #27	ENSODEG00000018878	ENSODEG00000018916	GEM (ENSODEG00000004933) #28	ENSODEG00000004970	CDH17 (ENSODEG00000004993) #30	PDP1 (ENSODEG00000005061) #31	TMEM67 (ENSODEG00000005116) #32
Degu	MODERN SPECIES	272													ENSODEG00000000303	ENSODEG00000000289	FAT4 (ENSODEG00000000248)	ENSODEG00000018649 #22	ANKRD50 (ENSODEG00000000902)	ENSODEG00000018609	ENSODEG00000018626
Long-tailed chinchilla	MODERN SPECIES	124	MATN2 (ENSCLAG00000005911)	LAPTM4B (ENSCLAG00000005642)	MTDH (ENSCLAG00000007884)	ENSCLAG00000007799	TSPYL5 (ENSCLAG00000007761)	CPQ (ENSCLAG00000007372)	SDC2 (ENSCLAG00000006071)	PTDSS1 (ENSCLAG00000005033)	MTERF3 (ENSCLAG00000004692)	UQCRB (ENSCLAG00000004601)	GDF6 (ENSCLAG00000007858) #15	CFAP418 (ENSCLAG00000007631) #18	PLEKHF2 (ENSCLAG00000007453) #19	NDUFAF6 (ENSCLAG00000007265) #20	TP53INP1 (ENSCLAG00000007072) #21	CCNE2 (ENSCLAG00000006670) #22	INTS8 (ENSCLAG00000006242) #23	DPY19L4 (ENSCLAG00000008110) #24	ENSCLAG00000007117	ESRP1 (ENSCLAG00000015531) #25	VIRMA (ENSCLAG00000013204) #26	FSBP (ENSCLAG00000013136)	RAD54B (ENSCLAG00000010476) #27	GEM (ENSCLAG00000010140) #28	CDH17 (ENSCLAG00000014507) #30	PDP1 (ENSCLAG00000013964) #31	TMEM67 (ENSCLAG00000006451) #32	RBM12B (ENSCLAG00000017617) #33	CIBAR1 (ENSCLAG00000005013) #34	TRIQK (ENSCLAG00000004830)	RUNX1T1 (ENSCLAG00000006551)
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES		RIDA (ENSCPOG00000036991)	RPL30 (ENSCPOG00000030315)	MATN2 (ENSCPOG00000003062)	LAPTM4B (ENSCPOG00000020368)	MTDH (ENSCPOG00000037219)	CPQ (ENSCPOG00000007260)	SDC2 (ENSCPOG00000036427)	PTDSS1 (ENSCPOG00000003491)	MTERF3 (ENSCPOG00000003487)	UQCRB (ENSCPOG00000037355)	GDF6 (ENSCPOG00000010549) #15	CFAP418 (ENSCPOG00000038754) #18	PLEKHF2 (ENSCPOG00000037254) #19	NDUFAF6 (ENSCPOG00000010701) #20	TP53INP1 (ENSCPOG00000037283) #21	ENSCPOG00000013401 #22	INTS8 (ENSCPOG00000013395) #23	DPY19L4 (ENSCPOG00000013388) #24	ESRP1 (ENSCPOG00000012197) #25	VIRMA (ENSCPOG00000009333) #26	RAD54B (ENSCPOG00000011643) #27	FSBP (ENSCPOG00000009332)	GEM (ENSCPOG00000009714) #28	CDH17 (ENSCPOG00000006582) #30	TMEM67 (ENSCPOG00000007816) #32	RBM12B (ENSCPOG00000007815) #33	CIBAR1 (ENSCPOG00000007802) #34	TRIQK (ENSCPOG00000031688)	RUNX1T1 (ENSCPOG00000026546)	SLC26A7 (ENSCPOG00000002686)	LRRC69 (ENSCPOG00000021324)
Guinea pig	MODERN SPECIES	64							FAM110B (ENSCPOG00000033617)	BPNT2 (ENSCPOG00000023705)	PENK (ENSCPOG00000031786)	ENSCPOG00000020018	SDR16C5 (ENSCPOG00000000571)	CHCHD7 (ENSCPOG00000030280)	PLAG1 (ENSCPOG00000039131)	MOS (ENSCPOG00000020476)	ENSCPOG00000011697	ENSCPOG00000030320 #22	LYN (ENSCPOG00000011693)	TGS1 (ENSCPOG00000009713)	TMEM68 (ENSCPOG00000019826)	XKR4 (ENSCPOG00000003676)	ENSCPOG00000039324	SOX17 (ENSCPOG00000000892)	MRPL15 (ENSCPOG00000035946)	LYPLA1 (ENSCPOG00000022715)	TCEA1 (ENSCPOG00000005886)	ENSCPOG00000038533	ENSCPOG00000022816	ATP6V1H (ENSCPOG00000012174)	ENSCPOG00000023180	OPRK1 (ENSCPOG00000006607)	NPBWR1 (ENSCPOG00000019602)
Naked mole-rat female	MODERN SPECIES	13	ENSHGLG00000021132	ENSHGLG00000021356	CPQ (ENSHGLG00000018667)	SDC2 (ENSHGLG00000017524)	PTDSS1 (ENSHGLG00000017517)	MTERF3 (ENSHGLG00000013588)	ENSHGLG00000039360	GDF6 (ENSHGLG00000008839) #15	ENSHGLG00000019781 #34	ENSHGLG00000007832 #18	ENSHGLG00000006843	PLEKHF2 (ENSHGLG00000050648) #19	ENSHGLG00000005773 #20	TP53INP1 (ENSHGLG00000041901) #21	AK6 (ENSHGLG00000004657)	CCNE2 (ENSHGLG00000004502) #22	INTS8 (ENSHGLG00000014703) #23	ENSHGLG00000012664 #24	ENSHGLG00000049494	ENSHGLG00000043814	ENSHGLG00000008366 #25	ENSHGLG00000042399	ENSHGLG00000035172	VIRMA (ENSHGLG00000006573) #26	ENSHGLG00000032542	ENSHGLG00000039726	FSBP (ENSHGLG00000044850)	GEM (ENSHGLG00000006576) #28	CDH17 (ENSHGLG00000005544) #30	ENSHGLG00000033913	PDP1 (ENSHGLG00000012388) #31
Lagomorpha	ANCESTRAL SPECIES	20	ENSGT00390000012138.a.b.s.a	ENSGT00940000158008	ENSGT00940000153446.a.a	ENSGT00940000154181.a.d	ENSGT00940000162862	ENSGT00390000018110	ENSGT00940000157222	ENSGT00530000063576.B	ENSGT00390000005801	ENSGT00390000012916	ENSGT00940000162274 #15	ENSGT00390000006173 #18	ENSGT00940000156408 #19	ENSGT00510000048688 #20	ENSGT00530000063829.A #21	ENSGT00940000156934 #22	ENSGT00390000007597 #23	ENSGT00530000063023.A.b #24	ENSGT00940000159511 #25	ENSGT00390000002833 #26	ENSGT00940000156966 #27	ENSGT00940000157830 #28	ENSGT00940000157655 #30	ENSGT00940000156368.b #31	ENSGT00390000010606 #32	ENSGT00940000158322 #33	ENSGT00390000010285.c #34	ENSGT01100000263544.c.b	ENSGT00940000164066	ENSGT00390000012840	ENSGT00390000003680.b.b
Rabbit	MODERN SPECIES	14	MTDH (ENSOCUG00000011400)	ENSOCUG00000031706	TSPYL5 (ENSOCUG00000009903)	CPQ (ENSOCUG00000014385)	ENSOCUG00000002662	ENSOCUG00000038859	PTDSS1 (ENSOCUG00000004281)	MTERF3 (ENSOCUG00000004276)	ENSOCUG00000008113	ENSOCUG00000038874	GDF6 (ENSOCUG00000008104) #15	ENSOCUG00000034200	CFAP418 (ENSOCUG00000001062) #18	NDUFAF6 (ENSOCUG00000006635) #20	TP53INP1 (ENSOCUG00000016241) #21	CCNE2 (ENSOCUG00000005398) #22	INTS8 (ENSOCUG00000005386) #23	DPY19L4 (ENSOCUG00000001317) #24	ESRP1 (ENSOCUG00000001316) #25	VIRMA (ENSOCUG00000016495) #26	RAD54B (ENSOCUG00000016478) #27	GEM (ENSOCUG00000001030) #28	CDH17 (ENSOCUG00000001029) #30	PDP1 (ENSOCUG00000003939) #31	TMEM67 (ENSOCUG00000010390) #32	RBM12B (ENSOCUG00000010353) #33	CIBAR1 (ENSOCUG00000010331) #34	ENSOCUG00000039147	TRIQK (ENSOCUG00000034527)	ENSOCUG00000022069	RUNX1T1 (ENSOCUG00000003754)
Pika	MODERN SPECIES	4257													PLEKHF2 (ENSOPRG00000007083) #19	NDUFAF6 (ENSOPRG00000018893) #20	TP53INP1 (ENSOPRG00000007070) #21	CCNE2 (ENSOPRG00000007056) #22	INTS8 (ENSOPRG00000007018) #23	ENSOPRG00000006994