Actinopterygii	DUPLICATION
Actinopterygii	ANCESTRAL SPECIES	649																ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01100000263613 #24	ENSGT00940000163927.a.a #25
Neopterygii	ANCESTRAL SPECIES	422																ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01100000263613 #24	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27
Osteoglossocephalai	ANCESTRAL SPECIES	87								ENSGT00530000063691.b	ENSGT00390000008657	ENSGT00390000010017	ENSGT00940000160771	ENSGT00390000013834	ENSGT00940000165258	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01100000263613 #24	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00640000091486.b	ENSGT00940000165960.a.a ##30	ENSGT00940000156128.a #29	ENSGT00940000165960.a.b.b #30	ENSGT00940000167107 #31	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418
Clupeocephala	ANCESTRAL SPECIES	50			ENSGT00940000169954	ENSGT00600000085600	ENSGT00390000013368	ENSGT00510000047760	ENSGT01070000254383	ENSGT00940000180688	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01100000263613 #24	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.a.b.b #30	ENSGT00940000167107 #31	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00440000037582
Otomorpha	ANCESTRAL SPECIES	207		ENSGT00940000169954	ENSGT00600000085600	ENSGT00390000013368	ENSGT00510000047760	ENSGT01070000254383	ENSGT00940000167160	ENSGT00940000180688	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01100000263613 #24	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.a.b.b #30	ENSGT00940000167107 #31	ENSGT00390000000592	ENSGT00940000165100.b.f	ENSGT00940000165987	ENSGT00440000037582	ENSGT00940000158001
Otophysi	ANCESTRAL SPECIES	210							ENSGT01090000260185	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01100000263613 #24	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.a.b.b #30	ENSGT01010000222656	ENSGT00940000167107 #31	ENSGT00940000156646.c #32	ENSGT00940000160303.a.a #33	ENSGT00940000166283 #34	ENSGT00650000094881 #35
Cyprinoidei	ANCESTRAL SPECIES	14	ENSGT00390000005498 #9	ENSGT00390000013762.a.f #10	ENSGT00510000048151.a #11	ENSGT00940000154790.a.b #12	ENSGT00940000160125 #13	ENSGT01090000260185	ENSGT00940000154273.b #14	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01100000263613 #24	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.a.b.b #30	ENSGT01010000222656	ENSGT00940000167107.e ##31	ENSGT00940000167107.f #31	ENSGT00940000156646.c.a #32	ENSGT00940000160303.a.a #33	ENSGT00940000166283 #34	ENSGT00650000094881 #35
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	70	ENSGT00940000165127.b.a #7	ENSGT00940000165739.f.b #8	ENSGT00390000005498.a #9	ENSGT00390000013762.a.f.b #10	ENSGT00510000048151.a.d #11	ENSGT00940000154790.a.b.a #12	ENSGT00940000160125.l #13	ENSGT00940000154273.b.f #14	ENSGT00940000156022.a #15	ENSGT00940000159844.e #16	ENSGT00940000159372.e #17	ENSGT00940000160289.j #18	ENSGT00940000161071.e #19	ENSGT00940000166370.d #20	ENSGT00730000112287.a #21	ENSGT00950000182903.a.b.i.i #22	ENSGT00940000158535.ab #23	ENSGT01100000263613.f #24	ENSGT00940000163927.a.a.bb #25	ENSGT00940000153491.b.b.b.a #26	ENSGT00940000166316.a #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.a.b.b.c #30	ENSGT00940000167107.f #31	ENSGT00940000156646.c.a.a.a #32	ENSGT00940000160303.a.a #33	ENSGT00940000166283.hb #34	ENSGT00650000094881.a.b #35	ENSGT00950000183121.a.c.b.a #36	ENSGT00510000050706.a #37
Cyprininae_a	ANCESTRAL SPECIES	183	ENSGT00950000182924.A.a.d	ENSGT00940000165127.b.a #7	ENSGT00940000165739.f.b #8	ENSGT00390000005498.a #9	ENSGT00390000013762.a.f.b #10	ENSGT00510000048151.a.d #11	ENSGT00940000154790.a.b.a #12	ENSGT00940000160125.l #13	ENSGT00940000154273.b.f #14	ENSGT00940000159844.e #16	ENSGT00940000159372.e #17	ENSGT00940000160289.j #18	ENSGT00940000161071.e #19	ENSGT00940000166370.d #20	ENSGT00730000112287.a #21	ENSGT00950000182903.a.b.i.i #22	ENSGT00940000158535.ab #23	ENSGT01100000263613.f #24	ENSGT00940000163927.a.a.bb #25	ENSGT00940000153491.b.b.b.a #26	ENSGT00940000166316.a #27	ENSGT00390000014072.B.e #28	ENSGT00940000156128.a #29	ENSGT00940000165960.a.b.b.c #30	ENSGT00940000167107.f #31	ENSGT00940000156646.c.a.a.a #32	ENSGT00940000160303.a.a #33	ENSGT00940000166283.hb #34	ENSGT00650000094881.b ##35	ENSGT00510000050706.a #37	ENSGT00940000158001.f
Golden-line barbel	MODERN SPECIES	226	ovol1a (ENSSGRG00000001893) #8	mus81 (ENSSGRG00000001892) #9	ENSSGRG00000001891 #10	tmem179ba (ENSSGRG00000001889) #11	prox3 (ENSSGRG00000001887) #12	snx15 (ENSSGRG00000001886) #13	ENSSGRG00000001884	ENSSGRG00000001883	ENSSGRG00000001881	BCL6B (ENSSGRG00000001879) #16	SLC16A13 (ENSSGRG00000001878) #17	acap1 (ENSSGRG00000001728) #18	agfg2 (ENSSGRG00000001723) #19	ENSSGRG00000001721 #20	si:ch73-335l21.4 (ENSSGRG00000001719) #21	dvl2 (ENSSGRG00000001541) #22	ENSSGRG00000001532 #24	ponzr1 (ENSSGRG00000001531) #25	ENSSGRG00000001529 #26	ENSSGRG00000001307 #27	cnpy4 (ENSSGRG00000001273) #28	ENSSGRG00000001263	ENSSGRG00000001258	zgc:103586 (ENSSGRG00000001250) #31	slc3a2a (ENSSGRG00000001232) #32	zpax4 (ENSSGRG00000001200) #34	ENSSGRG00000001175 ##35	ENSSGRG00000001161 #36	tnfsf12 (ENSSGRG00000001141) ##37	CHD3 (ENSSGRG00000054786)	cyb5d1 (ENSSGRG00000054766)
Common carp reference	MODERN SPECIES		ENSCCRG00000072781	ENSCCRG00000077923	ENSCCRG00000028749	ENSCCRG00000028745 #7	mus81 (ENSCCRG00000028738) #9	ENSCCRG00000067345 #10	prox3 (ENSCCRG00000075683) #12	snx15 (ENSCCRG00000082844) #13	ENSCCRG00000047066 #14	ENSCCRG00000040056 #16	ENSCCRG00000073841 #17	acap1 (ENSCCRG00000055599) #18	agfg2 (ENSCCRG00000058070) #19	ENSCCRG00000066390	ENSCCRG00000023812 #20	dvl2 (ENSCCRG00000031042) #22	acadvl (ENSCCRG00000059681) #23	ENSCCRG00000060260 #24	ponzr1 (ENSCCRG00000057472) #25	ENSCCRG00000024980 #26	ENSCCRG00000051467 #27	cnpy4 (ENSCCRG00000054790) #28	ENSCCRG00000000634 #29	ENSCCRG00000000614 #30	zgc:103586 (ENSCCRG00000078336) #31	slc3a2a (ENSCCRG00000081287) #32	ENSCCRG00000067310 #33	zpax4 (ENSCCRG00000000347) #34	ENSCCRG00000000323 ##35	tnfsf12 (ENSCCRG00000064814) #37	ENSCCRG00000034580
Goldfish	MODERN SPECIES	47	ENSCARG00000068323 #7	ovol1a (ENSCARG00000068326) #8	ENSCARG00000068333	ENSCARG00000068397 #10	tmem179ba (ENSCARG00000068422) #11	prox3 (ENSCARG00000068431) #12	snx15 (ENSCARG00000068447) #13	ENSCARG00000068468 #15	BCL6B (ENSCARG00000068480) #16	SLC16A13 (ENSCARG00000068491) #17	acap1 (ENSCARG00000068552) #18	agfg2 (ENSCARG00000068769) #19	ENSCARG00000068783 #20	si:ch73-335l21.4 (ENSCARG00000068794) #21	si:ch73-335l21.2 (ENSCARG00000068802)	dvl2 (ENSCARG00000068817) #22	acadvl (ENSCARG00000068888) #23	ENSCARG00000069113 #24	ponzr1 (ENSCARG00000069121) #25	ENSCARG00000069129 #26	ENSCARG00000069146 #27	cnpy4 (ENSCARG00000069150) #28	ENSCARG00000069157 #29	ENSCARG00000069178 #30	zgc:103586 (ENSCARG00000000191) #31	zgc:158423 (ENSCARG00000000262) ##32	zpax4 (ENSCARG00000000404) #34	ENSCARG00000000537 #35	ENSCARG00000000548 #36	tnfsf12 (ENSCARG00000000556) #37	CHD3 (ENSCARG00000000593)
Cyprininae	ANCESTRAL SPECIES	1	ENSGT00940000165739.f.a ##8	ENSGT00390000005498.b ##9	ENSGT00390000013762.a.f.a ##10	ENSGT00510000048151.a.c ##11	ENSGT00940000154790.a.b.b ##12	ENSGT00940000160125.k ##13	ENSGT01090000260185	ENSGT00940000154273.b.e ##14	ENSGT00940000159844.f ##16	ENSGT00940000159372.f ##17	ENSGT00940000160289.i ##18	ENSGT00940000161071.f ##19	ENSGT00940000166370.c ##20	ENSGT00730000112287.b ##21	ENSGT00940000174877	ENSGT00950000182903.a.b.i.j ##22	ENSGT00940000158535.`b ##23	ENSGT01100000263613.e ##24	ENSGT00940000163927.a.a.cb ##25	ENSGT00940000153491.b.b.b.b ##26	ENSGT00940000166316.b ##27	ENSGT00940000165960.a.b.b.d ##30	ENSGT01010000222656	ENSGT00940000167107.e ##31	ENSGT00940000156646.c.a.a.b ##32	ENSGT00650000094881.a.a ##35	ENSGT00800000125278	ENSGT00950000183121.a.c.b.b ##36	ENSGT00510000050706.b ##37	ENSGT00940000177727.a	ENSGT00940000158001.e
Goldfish	MODERN SPECIES	25	ENSCARG00000062528 ##7	ovol1a (ENSCARG00000062511) ##8	mus81 (ENSCARG00000062463) ##9	TMEM151A (ENSCARG00000062450) ##10	tmem179ba (ENSCARG00000062422) ##11	prox3 (ENSCARG00000062406) ##12	snx15 (ENSCARG00000062393) ##13	ENSCARG00000062379	ENSCARG00000062371 ##14	BCL6B (ENSCARG00000062355) ##16	SLC16A13 (ENSCARG00000062339) ##17	acap1 (ENSCARG00000062266) ##18	agfg2 (ENSCARG00000062191) ##19	ENSCARG00000062164 ##20	si:ch73-335l21.4 (ENSCARG00000062152) ##21	dvl2 (ENSCARG00000061847) ##22	acadvl (ENSCARG00000058232) ##23	ENSCARG00000058156 ##24	ponzr1 (ENSCARG00000058134) ##25	ENSCARG00000058113 ##26	ENSCARG00000058100 ##27	ENSCARG00000058022	ENSCARG00000057992 ##30	ENSCARG00000057973	ENSCARG00000057950 ##31	ENSCARG00000057942	ENSCARG00000057937	ENSCARG00000057931	ENSCARG00000057886	ENSCARG00000057858	ENSCARG00000057868
Cyprininae_a	ANCESTRAL SPECIES	56	ENSGT00940000165739.f.a ##8	ENSGT00390000005498.b ##9	ENSGT00390000013762.a.f.a ##10	ENSGT00510000048151.a.c ##11	ENSGT00940000154790.a.b.b ##12	ENSGT00940000160125.k ##13	ENSGT00940000154273.b.e ##14	ENSGT00940000156022.a #15	ENSGT00940000159844.f ##16	ENSGT00940000159372.f ##17	ENSGT00940000160289.i ##18	ENSGT00940000161071.f ##19	ENSGT00940000166370.c ##20	ENSGT00730000112287.b ##21	ENSGT00940000174877	ENSGT00950000182903.a.b.i.j ##22	ENSGT00940000158535.`b ##23	ENSGT01100000263613.e ##24	ENSGT00940000163927.a.a.cb ##25	ENSGT00940000153491.b.b.b.b ##26	ENSGT00940000166316.b ##27	ENSGT00390000014072.B.f #28	ENSGT00940000165960.a.b.b.d ##30	ENSGT01010000222656	ENSGT00940000167107.e ##31	ENSGT00940000156646.c.a.a.b ##32	ENSGT00800000125278	ENSGT00950000183121.a.c.b.b ##36	ENSGT00510000050706.b ##37	ENSGT00940000177727.a	ENSGT00940000158001.e
Common carp reference	MODERN SPECIES	6	ENSCCRG00000077729	ENSCCRG00000057527 ##7	ovol1a (ENSCCRG00000070411) ##8	mus81 (ENSCCRG00000028513) ##9	si:ch211-285j22.3 (ENSCCRG00000081031)	prox3 (ENSCCRG00000052974) ##12	snx15 (ENSCCRG00000057490) ##13	ENSCCRG00000028488 ##14	ENSCCRG00000028478 ##16	ENSCCRG00000040049 ##17	acap1 (ENSCCRG00000067284) ##18	agfg2 (ENSCCRG00000028440) ##19	ENSCCRG00000034175 ##20	si:ch73-335l21.4 (ENSCCRG00000082199) ##21	si:ch73-335l21.2 (ENSCCRG00000079520)	dvl2 (ENSCCRG00000021583) ##22	acadvl (ENSCCRG00000054675) ##23	ENSCCRG00000021604 ##24	ponzr1 (ENSCCRG00000081415) ##25	ENSCCRG00000021610 ##26	ENSCCRG00000066145 ##27	cnpy4 (ENSCCRG00000021658) #28	ENSCCRG00000079316	ENSCCRG00000057418 ##30	ENSCCRG00000077398	ENSCCRG00000056814 ##31	slc3a2a (ENSCCRG00000000400) ##32	ENSCCRG00000077189	sat2a.2 (ENSCCRG00000024255) ##36	tnfsf12 (ENSCCRG00000081345) ##37	ENSCCRG00000024284
Golden-line barbel	MODERN SPECIES	199	ENSSGRG00000046458 ##7	ovol1a (ENSSGRG00000046457) ##8	mus81 (ENSSGRG00000046454) ##9	TMEM151A (ENSSGRG00000046453) ##10	tmem179ba (ENSSGRG00000046452) ##11	prox3 (ENSSGRG00000046450) ##12	snx15 (ENSSGRG00000046449) ##13	ENSSGRG00000046448 #15	BCL6B (ENSSGRG00000046447) ##16	SLC16A13 (ENSSGRG00000046446) ##17	acap1 (ENSSGRG00000046443) ##18	agfg2 (ENSSGRG00000046442) ##19	ENSSGRG00000046440 ##20	si:ch73-335l21.4 (ENSSGRG00000046438) ##21	si:ch73-335l21.2 (ENSSGRG00000046437)	dvl2 (ENSSGRG00000046435) ##22	acadvl (ENSSGRG00000045698) ##23	ENSSGRG00000045663 ##24	ponzr1 (ENSSGRG00000045661) ##25	ENSSGRG00000045659 ##26	ENSSGRG00000045602 ##27	cnpy4 (ENSSGRG00000045600) #28	ENSSGRG00000045599 ##32	slc3a2a (ENSSGRG00000045593) ##32	zpax4 (ENSSGRG00000045589) ##34	ENSSGRG00000045587 ##36	tnfsf12 (ENSSGRG00000045586) ##37	ENSSGRG00000045585	CHD3 (ENSSGRG00000042076)	cyb5d1 (ENSSGRG00000042018)	dnajc3b (ENSSGRG00000041931)
Zebrafish	MODERN SPECIES	22	TMEM151A (ENSDARG00000077986) #10	ENSDARG00000100885	si:ch211-285j22.3 (ENSDARG00000100703)	tmem179ba (ENSDARG00000056233) #11	prox3 (ENSDARG00000088810) #12	snx15 (ENSDARG00000020397) #13	ENSDARG00000069331 #14	BCL6B (ENSDARG00000069335) #16	SLC16A13 (ENSDARG00000055342) #17	acap1 (ENSDARG00000056346) #18	agfg2 (ENSDARG00000069334) #19	ENSDARG00000036414 #20	si:ch73-335l21.4 (ENSDARG00000091234) #21	ENSDARG00000105541	si:ch73-335l21.2 (ENSDARG00000105617)	dvl2 (ENSDARG00000056184) #22	acadvl (ENSDARG00000016687) #23	ENSDARG00000077414 #24	ponzr1 (ENSDARG00000090444) #25	ENSDARG00000036420 #26	ENSDARG00000036422 #27	cnpy4 (ENSDARG00000055797) #28	ENSDARG00000105585	ENSDARG00000061850 #29	ENSDARG00000100712 #30	ENSDARG00000105530	zgc:103586 (ENSDARG00000036426) #31	slc3a2a (ENSDARG00000036427) #32	zgc:158423 (ENSDARG00000055791) ##32	ENSDARG00000098410 #33	zpax4 (ENSDARG00000079034) #34
Characiphysae	ANCESTRAL SPECIES	45	ENSGT00940000157623	ENSGT00940000160414.c	ENSGT00940000163776.a.a	ENSGT01030000234590.B.a.b	ENSGT00940000176904	ENSGT00550000075058	ENSGT01090000260185	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01100000263613 #24	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000157843	ENSGT00530000063624.B	ENSGT00390000005569	ENSGT00950000182963.b.b	ENSGT00940000153904.b	ENSGT00940000153284.a.mc.a	ENSGT00940000164592	ENSGT00940000165991
Channel catfish	MODERN SPECIES	26	plcb3 (ENSIPUG00000001586)	slc8a4b (ENSIPUG00000001549)	cct7 (ENSIPUG00000001511)	HSPA12B (ENSIPUG00000001447)	paip2b (ENSIPUG00000001427)	nagk (ENSIPUG00000001389)	dok1 (ENSIPUG00000001379)	m1ap (ENSIPUG00000001358)	SEMA4F (ENSIPUG00000001339)	Slc16a13 (ENSIPUG00000001298) #17	Acap2 (ENSIPUG00000001193) #18	ENSIPUG00000001163	Irs1 (ENSIPUG00000001146) #20	si:ch73-335l21.4 (ENSIPUG00000001141) #21	si:ch73-335l21.2 (ENSIPUG00000001136)	dvl2 (ENSIPUG00000001111) #22	ACADVL (ENSIPUG00000001041) #23	ENSIPUG00000001107 #24	ponzr1 (ENSIPUG00000001032) #25	ponzr1 (ENSIPUG00000001027) #25	ENSIPUG00000001006 #26	ENSIPUG00000000992 #27	cnpy4 (ENSIPUG00000000974) #28	hdac8 (ENSIPUG00000000898)	cited1 (ENSIPUG00000000879)	rps4x (ENSIPUG00000000840)	NHSL2 (ENSIPUG00000000835)	arhgap36 (ENSIPUG00000000815)	ENSIPUG00000000775	zgc (ENSIPUG00000000761)	gc2 (ENSIPUG00000000742)
Characiphysae_b	ANCESTRAL SPECIES	154				ENSGT01030000234590.B.a.b	ENSGT00940000176904	ENSGT00550000075058	ENSGT01090000260185	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01100000263613 #24	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000157843	ENSGT00530000063624.B	ENSGT00390000005569	ENSGT00950000182963.b.b	ENSGT00940000153904.b	ENSGT00940000153284.a.mc.a	ENSGT00940000164592	ENSGT00940000165991
Characoidei	ANCESTRAL SPECIES	9				ENSGT01030000234590.B.a.b	ENSGT00940000176904	ENSGT00550000075058	ENSGT01090000260185	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000155511.m	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01100000263613 #24	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000157843	ENSGT00530000063624.B	ENSGT00390000005569	ENSGT00950000182963.b.b	ENSGT00940000153904.b	ENSGT00940000153284.a.mc.a	ENSGT00940000164592	ENSGT00940000165991
Mexicana tetra	MODERN SPECIES	7	faah2b (ENSAMXG00000004970)	TESK1 (ENSAMXG00000004969)	pik3c3 (ENSAMXG00000004965)	tm4sf5 (ENSAMXG00000034674)	si:dkey-85k7.7 (ENSAMXG00000041473)	mettl3 (ENSAMXG00000012824)	ENSAMXG00000043297	ENSAMXG00000036209 #15	ENSAMXG00000012978 #16	SLC16A13 (ENSAMXG00000013028) #17	acap1 (ENSAMXG00000013034) #18	ENSAMXG00000042645	ENSAMXG00000013079 #20	si:ch73-335l21.2 (ENSAMXG00000035766)	si:ch73-335l21.4 (ENSAMXG00000032709) #21	dvl2 (ENSAMXG00000013102) #22	acadvl (ENSAMXG00000013130) #23	ENSAMXG00000041941 #24	ponzr1 (ENSAMXG00000040115) #25	ENSAMXG00000013152 #26	ENSAMXG00000013165 #27	ENSAMXG00000042790	cnpy4 (ENSAMXG00000013200) #28	hdac8 (ENSAMXG00000013212)	cited1 (ENSAMXG00000026480)	rps4x (ENSAMXG00000013268)	NHSL2 (ENSAMXG00000013279)	arhgap36 (ENSAMXG00000013311)	ENSAMXG00000040967	ENSAMXG00000031893	rasl11a (ENSAMXG00000035770)
Red-bellied piranha	MODERN SPECIES	501				tm4sf5 (ENSPNAG00000025644)	si:dkey-85k7.7 (ENSPNAG00000025656)	mettl3 (ENSPNAG00000025734)	ENSPNAG00000025861	ENSPNAG00000025875 #15	ENSPNAG00000025921 #16	SLC16A13 (ENSPNAG00000025938) #17	acap1 (ENSPNAG00000026121) #18	ENSPNAG00000006524	ENSPNAG00000006858 #20	si:ch73-335l21.4 (ENSPNAG00000026160) #21	si:ch73-335l21.2 (ENSPNAG00000004016)	dvl2 (ENSPNAG00000005502) #22	acadvl (ENSPNAG00000026273) #23	ENSPNAG00000026294 #24	ponzr1 (ENSPNAG00000026305) #25	ponzr1 (ENSPNAG00000026318) #25	ENSPNAG00000026342 #26	ENSPNAG00000006479 #27
Electric eel	MODERN SPECIES	1219																dvl2 (ENSEEEG00000001538) #22	acadvl (ENSEEEG00000001057) #23	ENSEEEG00000001013 #24	ponzr1 (ENSEEEG00000001011) #25
Clupeiformes	ANCESTRAL SPECIES	120		ENSGT00940000166370 #20	ENSGT00940000161071 #19	ENSGT00940000160289 #18	ENSGT00940000159372 #17	ENSGT00940000159844 #16	ENSGT00940000156022.a #15	ENSGT00940000176070	ENSGT00940000167160	ENSGT01070000254383	ENSGT00390000013368	ENSGT00600000085600	ENSGT00950000182899.C.b.g	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01100000263613 #24	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000167107 #31	ENSGT00390000000592	ENSGT00940000165100.b.f	ENSGT00940000165987	ENSGT00440000037582	ENSGT00940000158001	ENSGT00510000050706 #37
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES		acadvl (ENSDCDG00000018419) #23	ENSDCDG00000018410	ENSDCDG00000018406	slx1b (ENSDCDG00000018404)	ENSDCDG00000018403	ENSDCDG00000018400	ENSDCDG00000018397	ENSDCDG00000018395 #15	BCL6B (ENSDCDG00000018389) #16	SLC16A13 (ENSDCDG00000018386) #17	acap1 (ENSDCDG00000014474) #18	agfg2 (ENSDCDG00000014353) #19	ENSDCDG00000014342 #20	si:ch73-335l21.4 (ENSDCDG00000014339) #21	si:ch73-335l21.2 (ENSDCDG00000014334)	dvl2 (ENSDCDG00000013898) #22	rell1 (ENSDCDG00000013858)	zgc:194930 (ENSDCDG00000013851)	ENSDCDG00000013845	NWD2 (ENSDCDG00000013836)	DTHD1 (ENSDCDG00000013827)	ENSDCDG00000013821	ENSDCDG00000005472	ENSDCDG00000005470	ENSDCDG00000005172	PCDH7 (ENSDCDG00000005151)	ENSDCDG00000005144	STIM2 (ENSDCDG00000005046)	tbc1d19 (ENSDCDG00000004801)	CCKAR (ENSDCDG00000004766)	RBPJ (ENSDCDG00000004747)
Denticle herring	MODERN SPECIES	23								ENSDCDG00000022588 #15	BCL6B (ENSDCDG00000022583) #16	SLC16A13 (ENSDCDG00000022580) #17	acap1 (ENSDCDG00000019848) #18	agfg2 (ENSDCDG00000019800) #19	ENSDCDG00000019798 #20	si:ch73-335l21.4 (ENSDCDG00000019794) #21	si:ch73-335l21.2 (ENSDCDG00000019792)	dvl2 (ENSDCDG00000019643) #22	rell1 (ENSDCDG00000019627)	zgc:194930 (ENSDCDG00000019623)
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	9	ponzr1 (ENSCHAG00000026106) #25	ENSCHAG00000026109 #24	acadvl (ENSCHAG00000026116) #23	ENSCHAG00000000638	ENSCHAG00000000662	slx1b (ENSCHAG00000000700)	ENSCHAG00000000730	ENSCHAG00000000767	ENSCHAG00000000809	ENSCHAG00000000832	ENSCHAG00000000877 #15	ENSCHAG00000000971 #16	SLC16A13 (ENSCHAG00000000996) #17	acap1 (ENSCHAG00000001229) #18	ENSCHAG00000001740 #20	dvl2 (ENSCHAG00000001757) #22	rell1 (ENSCHAG00000001773)	zgc:194930 (ENSCHAG00000001806)	NWD2 (ENSCHAG00000001829)	ENSCHAG00000001888	ENSCHAG00000001900	ENSCHAG00000002023	ENSCHAG00000002042	ENSCHAG00000002066	ENSCHAG00000002084	ENSCHAG00000002121	ednrab (ENSCHAG00000002158)	ENSCHAG00000003316	ednrab (ENSCHAG00000003519)	ENSCHAG00000003830	ENSCHAG00000003922
Atlantic herring	MODERN SPECIES	24	ENSCHAG00000018409	capga (ENSCHAG00000018279)	slc25a35 (ENSCHAG00000018248)	rangrf (ENSCHAG00000018244)	ENSCHAG00000018209	grk1b (ENSCHAG00000018194)	ENSCHAG00000018169	ENSCHAG00000018157	ENSCHAG00000018146	cldn15b (ENSCHAG00000018141)	sat2b (ENSCHAG00000018098) ##36	sat2b (ENSCHAG00000018090) ##36	ENSCHAG00000018061	ENSCHAG00000018056 ##30	ENSCHAG00000018051 ##30	DVL2 (ENSCHAG00000017981) #22	acadvl (ENSCHAG00000016368) #23	ENSCHAG00000016254	ENSCHAG00000016233	ENSCHAG00000016228	ENSCHAG00000016218	gucy2d (ENSCHAG00000012940)	si:ch211-284e13.11 (ENSCHAG00000012875)	ENSCHAG00000012860	slc12a9 (ENSCHAG00000012698)	gnb2 (ENSCHAG00000012631)	ENSCHAG00000012620	mink1 (ENSCHAG00000005262)	PLD2 (ENSCHAG00000002170)	chrne (ENSCHAG00000001547)	gltpd2b (ENSCHAG00000001492)
Euteleosteomorpha	ANCESTRAL SPECIES	80	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT01090000260185	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT00940000154838.A.f.b.b	ENSGT01100000263613 #24	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000167107 #31	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418
Acanthomorphata	ANCESTRAL SPECIES	74	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30
Cod	MODERN SPECIES	8	acap1 (ENSGMOG00000016844) #18	ENSGMOG00000028165	ENSGMOG00000030769	ENSGMOG00000031128	ENSGMOG00000028352	ENSGMOG00000025698	ENSGMOG00000029118	ENSGMOG00000031799	ENSGMOG00000036283	ENSGMOG00000030378	ENSGMOG00000026181	agfg2 (ENSGMOG00000016834) #19	ENSGMOG00000036442 #20	si:ch73-335l21.4 (ENSGMOG00000014164) #21	si:ch73-335l21.2 (ENSGMOG00000036358)	dvl2 (ENSGMOG00000014125) #22	acadvl (ENSGMOG00000014084) #23	intu (ENSGMOG00000005821)	ino80b (ENSGMOG00000005805)	ENSGMOG00000005784	mfap3l (ENSGMOG00000005769)	actn3b (ENSGMOG00000009617)	ENSGMOG00000027696	ccs (ENSGMOG00000009635)	ENSGMOG00000009644	ENSGMOG00000023814	zgc:101810 (ENSGMOG00000009710)	six7 (ENSGMOG00000009723)	b4gat1 (ENSGMOG00000009731)	nit1 (ENSGMOG00000009736)	pfdn2 (ENSGMOG00000024138)
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b
Pinecone sodierfish	MODERN SPECIES	9	ENSMMDG00005023186	shbg (ENSMMDG00005023183)	NEURL4 (ENSMMDG00005023134)	ENSMMDG00005018080	ENSMMDG00005017977	zpax4 (ENSMMDG00005017972) #34	ENSMMDG00005017967	ENSMMDG00005017964 #15	BCL6B (ENSMMDG00005017961) #16	SLC16A13 (ENSMMDG00005017959) #17	acap1 (ENSMMDG00005017948) #18	agfg2 (ENSMMDG00005017929) #19	ENSMMDG00005017928 #20	si:ch73-335l21.4 (ENSMMDG00005017925) #21	si:ch73-335l21.2 (ENSMMDG00005017923)	dvl2 (ENSMMDG00005017908) #22	acadvl (ENSMMDG00005017165) #23	ENSMMDG00005017134	ponzr1 (ENSMMDG00005017133) #25	ENSMMDG00005017132 #27	ENSMMDG00005017128	cnpy4 (ENSMMDG00005017126) #28	ENSMMDG00005017042 #29	ENSMMDG00005017038 ##30	pcolceb (ENSMMDG00005016990)	per1b (ENSMMDG00005016500)	rell1 (ENSMMDG00005016478)	ENSMMDG00005016476	NWD2 (ENSMMDG00005016473)	DTHD1 (ENSMMDG00005016470)	ENSMMDG00005016277
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b
Tiger tail seahorse	MODERN SPECIES	506	ENSHCOG00000011850	capgb (ENSHCOG00000011861)	POLR2A (ENSHCOG00000011874)	ENSHCOG00000011903	shbg (ENSHCOG00000011914)	NEURL4 (ENSHCOG00000011926)	ENSHCOG00000011945	ENSHCOG00000011968 #34	ENSHCOG00000011977	ENSHCOG00000011983 #15	BCL6B (ENSHCOG00000012012) #16	SLC16A13 (ENSHCOG00000012018) #17	acap1 (ENSHCOG00000012023) #18	agfg2 (ENSHCOG00000012027) #19	ENSHCOG00000012035 #20	dvl2 (ENSHCOG00000012079) #22	zgc:101810 (ENSHCOG00000012101)	six7 (ENSHCOG00000012114)	b4gat1 (ENSHCOG00000012128)	pfdn2 (ENSHCOG00000012134)	nit1 (ENSHCOG00000012143)	CLCN3 (ENSHCOG00000012213)	mfap3l (ENSHCOG00000012229)	AADAT (ENSHCOG00000012255)	ino80b (ENSHCOG00000012295)	intu (ENSHCOG00000012317)	cxcl19 (ENSHCOG00000012345)	trmt10b (ENSHCOG00000012351)	f13a1b (ENSHCOG00000012373)	tex261 (ENSHCOG00000012400)	vax2 (ENSHCOG00000012416)
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00990000204615	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00990000204615	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00990000204615	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
Cichlidae	ANCESTRAL SPECIES	20	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283.o #34	ENSGT00940000166283.p #34	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a.q.a	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.q.b.a.a.a.a #25	ENSGT00940000163927.a.a.r #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00990000204615	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283.o #34	ENSGT00940000166283.p #34	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a.q.a.a.a	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.q.b.a.a.a.a.a #25	ENSGT00940000163927.a.a.q.b.a.a.b #25	ENSGT00940000163927.a.a.q.b.a.a.a.a.b #25	ENSGT00940000163927.a.a.q.b.a.b.b #25	ENSGT00940000163927.a.a.q.a #25	ENSGT00940000163927.a.a.r.a.a.a #25	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b.j.b ##30	ENSGT00940000165960.b.j.a ##30	ENSGT00940000159305	ENSGT00940000163587.a.b.b.e.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	23	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283.o #34	ENSGT00940000166283.p #34	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a.q.a.a.a	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.q.b.a.a.a.a.a #25	ENSGT00940000163927.a.a.q.b.a.a.b #25	ENSGT00940000163927.a.a.q.b.a.a.a.a.b #25	ENSGT00940000163927.a.a.q.b.a.b.b #25	ENSGT00940000163927.a.a.q.b.a.a.a.b.b #25	ENSGT00940000163927.a.a.q.b.a.a.a.b.a #25	ENSGT00940000163927.a.a.q.a #25	ENSGT00940000163927.a.a.r.a.a.a #25	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b.j.b ##30	ENSGT00940000179579
Haplochromini	ANCESTRAL SPECIES	31	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283.o #34	ENSGT00940000166283.p #34	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000177200.a.b	ENSGT00940000177278.a.b	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a.q.a.a.a	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.q.b.a.a.a.a.a #25	ENSGT00940000163927.a.a.q.b.a.a.b #25	ENSGT00940000163927.a.a.q.b.a.a.a.a.b #25	ENSGT00940000163927.a.a.q.b.a.b.b #25	ENSGT00940000163927.a.a.q.b.a.a.a.b.b #25	ENSGT00940000163927.a.a.q.b.a.a.a.b.a #25	ENSGT00940000163927.a.a.q.a #25	ENSGT00940000163927.a.a.r.a.a.b.a #25	ENSGT00940000163927.a.a.r.a.a.b.b #25	ENSGT00940000163927.a.a.r.a.b #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28
Haplochromini_A	ANCESTRAL SPECIES	35	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283.o #34	ENSGT00940000166283.p #34	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a.q.a.a.a	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.q.b.a.a.a.a.a #25	ENSGT00940000163927.a.a.q.b.a.a.b #25	ENSGT00940000163927.a.a.q.b.a.a.a.a.b #25	ENSGT00940000163927.a.a.q.b.a.b.b #25	ENSGT00940000163927.a.a.q.b.a.a.a.b.b #25	ENSGT00940000163927.a.a.q.b.a.a.a.b.a #25	ENSGT00940000163927.a.a.q.a #25	ENSGT00940000163927.a.a.r.a.a.b.a #25	ENSGT00940000163927.a.a.r.a.a.b.b #25	ENSGT00940000163927.a.a.r.a.b #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28
Haplochromini_B	ANCESTRAL SPECIES	25	ENSGT00940000154035.a	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283.o #34	ENSGT00940000166283.p #34	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a.q.a.a.a	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.q.b.a.a.a.a.a #25	ENSGT00940000163927.a.a.q.b.a.a.b #25	ENSGT00940000163927.a.a.q.b.a.a.a.a.b #25	ENSGT00940000163927.a.a.q.b.a.b.b #25	ENSGT00940000163927.a.a.q.b.a.a.a.b.b #25	ENSGT00940000163927.a.a.q.b.a.a.a.b.a #25	ENSGT00940000163927.a.a.q.a #25	ENSGT00940000163927.a.a.r.a.a.b.a #25	ENSGT00940000163927.a.a.r.a.a.b.b #25	ENSGT00940000163927.a.a.r.a.b #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28
Zebra mbuna	MODERN SPECIES	1106	ENSMZEG00005021484	ENSMZEG00005021489 #34	zpax4 (ENSMZEG00005021496) #34	ENSMZEG00005021501	ENSMZEG00005021505 #15	BCL6B (ENSMZEG00005021509) #16	ENSMZEG00005021517	ENSMZEG00005021520	ENSMZEG00005021523	ENSMZEG00005021525	SLC16A13 (ENSMZEG00005021529) #17	acap1 (ENSMZEG00005021533) #18	agfg2 (ENSMZEG00005021541) #19	ENSMZEG00005021547 #20	si:ch73-335l21.4 (ENSMZEG00005021548) #21	dvl2 (ENSMZEG00005021552) #22	acadvl (ENSMZEG00005021561) #23	ENSMZEG00005021568	ENSMZEG00005021569 #25	ponzr1 (ENSMZEG00005021572) #25	ENSMZEG00005021575 #25	ponzr1 (ENSMZEG00005021577) #25	ponzr1 (ENSMZEG00005021578) #25	ENSMZEG00005021581	ponzr1 (ENSMZEG00005021585) #25	ponzr1 (ENSMZEG00005021642) #25	ponzr1 (ENSMZEG00005021645) #25	ponzr1 (ENSMZEG00005021646) #25	ENSMZEG00005021647 #26	ENSMZEG00005021650 #27	cnpy4 (ENSMZEG00005021655) #28
Eastern happy	MODERN SPECIES	15	ENSACLG00000006520	ENSACLG00000006489 #15	ENSACLG00000006465 #16	ENSACLG00000006462	ENSACLG00000006457	ENSACLG00000006450	ENSACLG00000006441	ENSACLG00000006429	ENSACLG00000006416	SLC16A13 (ENSACLG00000006406) #17	acap1 (ENSACLG00000006302) #18	agfg2 (ENSACLG00000006252) #19	ENSACLG00000006244	ENSACLG00000006233 #20	si:ch73-335l21.4 (ENSACLG00000006229) #21	dvl2 (ENSACLG00000006173) #22	acadvl (ENSACLG00000006155) #23	ENSACLG00000006146	ENSACLG00000006119 #25	ponzr1 (ENSACLG00000006107) #25	ponzr1 (ENSACLG00000006081) #25	ponzr1 (ENSACLG00000006076) #25	ponzr1 (ENSACLG00000006071) #25	ponzr1 (ENSACLG00000006068) #25	ponzr1 (ENSACLG00000006066) #25	ponzr1 (ENSACLG00000006062) #25	ponzr1 (ENSACLG00000006050) #25	ponzr1 (ENSACLG00000005722) #25	ENSACLG00000005711	ENSACLG00000005699 #26	ENSACLG00000005689 #27
P. nyererei	MODERN SPECIES	609	NEURL4 (ENSPNYG00000022407)	ENSPNYG00000022467	ENSPNYG00000022522	ENSPNYG00000022532 #34	zpax4 (ENSPNYG00000022542) #34	ENSPNYG00000022552	ENSPNYG00000022560 #15	BCL6B (ENSPNYG00000022571) #16	ENSPNYG00000022580	SLC16A13 (ENSPNYG00000022584) #17	acap1 (ENSPNYG00000022603) #18	agfg2 (ENSPNYG00000022611) #19	ENSPNYG00000022629 #20	si:ch73-335l21.4 (ENSPNYG00000022634) #21	si:ch73-335l21.2 (ENSPNYG00000022638)	dvl2 (ENSPNYG00000022643) #22	acadvl (ENSPNYG00000022658) #23	ENSPNYG00000022684	ENSPNYG00000022709 #25	ponzr1 (ENSPNYG00000022712) #25	ENSPNYG00000022717 #25	ponzr1 (ENSPNYG00000022721) #25	ponzr1 (ENSPNYG00000022724) #25	ponzr1 (ENSPNYG00000022730) #25	ponzr1 (ENSPNYG00000022736) #25
Burton s mouthbrooder	MODERN SPECIES	716	NEURL4 (ENSHBUG00000018681)	ENSHBUG00000018434	ENSHBUG00000018362	zpax4 (ENSHBUG00000018348) #34	zpax4 (ENSHBUG00000018241) #34	ENSHBUG00000018213	ENSHBUG00000018190 #15	ENSHBUG00000018170 #16	ENSHBUG00000018155	SLC16A13 (ENSHBUG00000018123) #17	acap1 (ENSHBUG00000018093) #18	agfg2 (ENSHBUG00000017985) #19	ENSHBUG00000017939 #20	si:ch73-335l21.4 (ENSHBUG00000017907) #21	si:ch73-335l21.2 (ENSHBUG00000017898)	dvl2 (ENSHBUG00000017888) #22	acadvl (ENSHBUG00000017807) #23	ENSHBUG00000017747	ENSHBUG00000017739 #25	ponzr1 (ENSHBUG00000017729) #25	ponzr1 (ENSHBUG00000017714) #25	ponzr1 (ENSHBUG00000017703) #25	ponzr1 (ENSHBUG00000017699) #25	ponzr1 (ENSHBUG00000017693) #25	ponzr1 (ENSHBUG00000017644) #25
Lyretail cichlid	MODERN SPECIES	372	NEURL4 (ENSNBRG00000002132)	ENSNBRG00000002236	ARHGEF15 (ENSNBRG00000002333)	ENSNBRG00000002388 #34	ENSNBRG00000002447 #34	ENSNBRG00000002516	ENSNBRG00000002563 #15	BCL6B (ENSNBRG00000002571) #16	ENSNBRG00000002621	SLC16A13 (ENSNBRG00000002688) #17	acap1 (ENSNBRG00000002707) #18	agfg2 (ENSNBRG00000002782) #19	ENSNBRG00000002843 #20	si:ch73-335l21.4 (ENSNBRG00000002870) #21	si:ch73-335l21.2 (ENSNBRG00000002875)	dvl2 (ENSNBRG00000002888) #22	acadvl (ENSNBRG00000002949) #23	ENSNBRG00000002995	ENSNBRG00000003012 #25	ponzr1 (ENSNBRG00000003036) #25	ponzr1 (ENSNBRG00000003055) #25	ponzr1 (ENSNBRG00000003073) #25	ponzr1 (ENSNBRG00000003117) #25	ponzr1 (ENSNBRG00000003189) #25
Nile tilapia	MODERN SPECIES	15	ENSONIG00000037986	zpax4 (ENSONIG00000006698) #34	ENSONIG00000031698	ENSONIG00000004817 #15	ENSONIG00000004819 #16	ENSONIG00000007874	ENSONIG00000040467	ENSONIG00000037241	ENSONIG00000042817	SLC16A13 (ENSONIG00000004820) #17	acap1 (ENSONIG00000004822) #18	agfg2 (ENSONIG00000004827) #19	ENSONIG00000035777 #20	rnf227 (ENSONIG00000029883) #21	si:ch73-335l21.2 (ENSONIG00000041253)	dvl2 (ENSONIG00000004831) #22	acadvl (ENSONIG00000004837) #23	ENSONIG00000004844	ENSONIG00000004845 #25	ponzr1 (ENSONIG00000027740) #25	ENSONIG00000033020 #25	ponzr1 (ENSONIG00000004851) #25	ponzr1 (ENSONIG00000037680) #25	ENSONIG00000033985	ENSONIG00000035443	ENSONIG00000027164	ENSONIG00000033948	ENSONIG00000034488	ENSONIG00000034063	ENSONIG00000036689	ENSONIG00000034338
Midas cichlid	MODERN SPECIES	1115	NEURL4 (ENSACIG00000016087)	ENSACIG00000016154	ENSACIG00000016243	zpax4 (ENSACIG00000016498) #34	ENSACIG00000016536	ENSACIG00000016561	ENSACIG00000016578 #15	BCL6B (ENSACIG00000016645) #16	ENSACIG00000016670	SLC16A13 (ENSACIG00000016763) #17	acap1 (ENSACIG00000016836) #18	agfg2 (ENSACIG00000016883) #19	ENSACIG00000016904 #20	si:ch73-335l21.4 (ENSACIG00000016924) #21	si:ch73-335l21.2 (ENSACIG00000016929)	dvl2 (ENSACIG00000016934) #22	acadvl (ENSACIG00000016983) #23	ENSACIG00000017014	ponzr1 (ENSACIG00000017024) #25	ENSACIG00000017033	ponzr1 (ENSACIG00000017048) #25	ponzr1 (ENSACIG00000017056) #25	ponzr1 (ENSACIG00000017079) #25	ENSACIG00000017091	ENSACIG00000017097	mych (ENSACIG00000017105)	mtss1 (ENSACIG00000017120)	ENSACIG00000017183	ENSACIG00000017193	ENSACIG00000017213	ENSACIG00000017228
Pomacentridae	ANCESTRAL SPECIES	62	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283.m #34	ENSGT00940000166283.n #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b.l.a.b ##30	ENSGT00940000165960.b.l.b ##30	ENSGT00940000165960.b.l.a.a ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552
Bicolor damselfish	MODERN SPECIES	1838															si:ch73-335l21.2 (ENSSPAG00000005097)	dvl2 (ENSSPAG00000004859) #22	acadvl (ENSSPAG00000004797) #23	ENSSPAG00000004767	ponzr1 (ENSSPAG00000004763) #25	ENSSPAG00000004729 #26	ENSSPAG00000004708 #27	ENSSPAG00000003792	cnpy4 (ENSSPAG00000003718) #28
Pomacentridae_A	ANCESTRAL SPECIES	95	ENSGT00940000165960.b.l.a.a ##30	ENSGT00940000165960.b.l.b ##30	ENSGT00940000165960.b.l.a.b ##30	ENSGT00940000166283.m #34	ENSGT00940000166283.n #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00640000091486.a	ENSGT00940000166499	ENSGT01030000234573.B.c.b.b	ENSGT00940000159589	ENSGT00390000005147	ENSGT00600000084617	ENSGT00940000157482.e
Amphiprion	ANCESTRAL SPECIES	92	ENSGT00940000165960.b.l.a.a ##30	ENSGT00940000165960.b.l.b ##30	ENSGT00940000165960.b.l.a.b ##30	ENSGT00940000166283.m #34	ENSGT00940000166283.n #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.p.a #25	ENSGT00940000163927.a.a.o #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00640000091486.a	ENSGT00940000166499	ENSGT01030000234573.B.c.b.b	ENSGT00940000159589	ENSGT00390000005147	ENSGT00600000084617
Clown anemonefish	MODERN SPECIES	1263			ENSAOCG00000017697 ##30	zpax4 (ENSAOCG00000001235) #34	zpax4 (ENSAOCG00000001239) #34	ENSAOCG00000017748	ENSAOCG00000017777	ENSAOCG00000017800 #15	ENSAOCG00000017838 #16	SLC16A13 (ENSAOCG00000001254) #17	acap1 (ENSAOCG00000017878) #18	agfg2 (ENSAOCG00000017905) #19	ENSAOCG00000017944 #20	si:ch73-335l21.4 (ENSAOCG00000017956) #21	si:ch73-335l21.2 (ENSAOCG00000017963)	dvl2 (ENSAOCG00000018028) #22
Orange clownfish	MODERN SPECIES	15	pcolceb (ENSAPEG00000007427)	ENSAPEG00000007464 ##30	ENSAPEG00000007474 ##30	ENSAPEG00000007498 ##30	zpax4 (ENSAPEG00000007523) #34	ENSAPEG00000007614 #34	ENSAPEG00000007630	ENSAPEG00000007660 #15	ENSAPEG00000007673 #16	SLC16A13 (ENSAPEG00000007690) #17	acap1 (ENSAPEG00000007709) #18	agfg2 (ENSAPEG00000007814) #19	ENSAPEG00000007847 #20	si:ch73-335l21.4 (ENSAPEG00000007854) #21	si:ch73-335l21.2 (ENSAPEG00000007863)	dvl2 (ENSAPEG00000007874) #22	acadvl (ENSAPEG00000007921) #23	ENSAPEG00000007981	ponzr1 (ENSAPEG00000007984) #25	ponzr1 (ENSAPEG00000007988) #25	ENSAPEG00000007997 #26	ENSAPEG00000008036 #27	ENSAPEG00000008372	cnpy4 (ENSAPEG00000008769) #28	ENSAPEG00000008805 #29	taf6l (ENSAPEG00000008884)	cth1 (ENSAPEG00000008930)	mta2 (ENSAPEG00000008941)	EML3 (ENSAPEG00000009039)	ecsit (ENSAPEG00000009076)	ENSAPEG00000009098
Spiny chromis	MODERN SPECIES	1289													ENSAPOG00000007565 #20	si:ch73-335l21.4 (ENSAPOG00000007538) #21	si:ch73-335l21.2 (ENSAPOG00000007534)	dvl2 (ENSAPOG00000007524) #22	acadvl (ENSAPOG00000007469) #23	ENSAPOG00000007455	ponzr1 (ENSAPOG00000007451) #25	ENSAPOG00000007440	ENSAPOG00000007421 #26
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b
Oryzias	ANCESTRAL SPECIES	21	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283.k #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000156128.a #29	ENSGT00940000165960.b.g ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000167169	ENSGT00940000157221.x
Oryzias_a	ANCESTRAL SPECIES	27	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283.k #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316.c #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000156128.a #29	ENSGT00940000165960.b.g ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000167169	ENSGT00940000157221.x
Chinese medaka	MODERN SPECIES	633	ENSOSIG00000000966	shbg (ENSOSIG00000000967)	ENSOSIG00000001149	ENSOSIG00000001210	ENSOSIG00000001214 #34	ENSOSIG00000001216	ENSOSIG00000001217	ENSOSIG00000001218 #15	ENSOSIG00000001219 #16	SLC16A13 (ENSOSIG00000001220) #17	acap1 (ENSOSIG00000001224) #18	ENSOSIG00000001228 #20	si:ch73-335l21.4 (ENSOSIG00000001229) #21	ENSOSIG00000001231	si:ch73-335l21.2 (ENSOSIG00000001232)	dvl2 (ENSOSIG00000001247) #22	acadvl (ENSOSIG00000004938) #23	ENSOSIG00000008762	ponzr1 (ENSOSIG00000008763) #25
Japanese Medaka HdrR	MODERN SPECIES	9	NEURL4 (ENSORLG00000006500)	ENSORLG00000006581	ENSORLG00000006596	ENSORLG00000006604 #34	ENSORLG00000028277	ENSORLG00000027240	ENSORLG00000006640 #15	ENSORLG00000006659 #16	SLC16A13 (ENSORLG00000006684) #17	acap1 (ENSORLG00000006715) #18	agfg2 (ENSORLG00000006726) #19	ENSORLG00000030113 #20	ENSORLG00000030236	si:ch73-335l21.4 (ENSORLG00000029844) #21	si:ch73-335l21.2 (ENSORLG00000024682)	dvl2 (ENSORLG00000006771) #22	acadvl (ENSORLG00000006819) #23	ENSORLG00000006827	ponzr1 (ENSORLG00000028811) #25	ENSORLG00000006846 #26	ENSORLG00000026979	ENSORLG00000006869 #27	ENSORLG00000006875	ENSORLG00000006903 #29	ENSORLG00000006910 ##30	pcolceb (ENSORLG00000030017)	per1b (ENSORLG00000006929)	RELL1 (ENSORLG00000006940)	ENSORLG00000023698	NWD2 (ENSORLG00000023423)	ENSORLG00000026395
Oryzias_b	ANCESTRAL SPECIES	18	ENSGT00940000161268	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283.k #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000156128.a #29	ENSGT00940000165960.b.g ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000167169	ENSGT00940000157221.x
Indian medaka	MODERN SPECIES	19	shbg (ENSOMEG00000010821)	NEURL4 (ENSOMEG00000010922)	ENSOMEG00000011131	ENSOMEG00000011184	zpax4 (ENSOMEG00000011305) #34	ENSOMEG00000011356 #34	ENSOMEG00000011425	ENSOMEG00000011490 #15	ENSOMEG00000000272 #16	SLC16A13 (ENSOMEG00000000274) #17	acap1 (ENSOMEG00000011715) #18	agfg2 (ENSOMEG00000000285) #19	ENSOMEG00000011879 #20	si:ch73-335l21.4 (ENSOMEG00000011912) #21	si:ch73-335l21.2 (ENSOMEG00000011917)	dvl2 (ENSOMEG00000011978) #22	acadvl (ENSOMEG00000012058) #23	ENSOMEG00000012075	ponzr1 (ENSOMEG00000012096) #25	ENSOMEG00000012137 #26	ENSOMEG00000000821 #27	ENSOMEG00000012453	ENSOMEG00000012500 #29	ENSOMEG00000012512 ##30	ENSOMEG00000012530 ##30	pcolceb (ENSOMEG00000012561)	per1b (ENSOMEG00000012728)	rell1 (ENSOMEG00000012793)	ENSOMEG00000012805	NWD2 (ENSOMEG00000012880)	ENSOMEG00000013126
Javanese ricefish	MODERN SPECIES	9	POLR2A (ENSOJAG00000015228)	ENSOJAG00000015143	shbg (ENSOJAG00000015131)	ENSOJAG00000014320	ARHGEF15 (ENSOJAG00000014287)	zpax4 (ENSOJAG00000014205) #34	ENSOJAG00000014188	ENSOJAG00000014097 #15	ENSOJAG00000014073 #16	SLC16A13 (ENSOJAG00000014064) #17	acap1 (ENSOJAG00000012339) #18	agfg2 (ENSOJAG00000012184) #19	ENSOJAG00000012169 #20	si:ch73-335l21.4 (ENSOJAG00000012153) #21	si:ch73-335l21.2 (ENSOJAG00000012134)	dvl2 (ENSOJAG00000012069) #22	acadvl (ENSOJAG00000010840) #23	ENSOJAG00000010740	ponzr1 (ENSOJAG00000010731) #25	ENSOJAG00000010647 #26	ENSOJAG00000010619 #27	ENSOJAG00000010497 #29	ENSOJAG00000010485 ##30	pcolceb (ENSOJAG00000011565)	per1b (ENSOJAG00000011505)	rell1 (ENSOJAG00000011495)	ENSOJAG00000011485	NWD2 (ENSOJAG00000011479)	ENSOJAG00000011466	ENSOJAG00000011455	ENSOJAG00000010832
Cyprinodontiformes	ANCESTRAL SPECIES	22	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000163472.e.b	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b
Cyprinodontoidei	ANCESTRAL SPECIES	21	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163472.e.b	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.m #25	ENSGT00940000163927.a.a.n #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
Poeciliinae	ANCESTRAL SPECIES	21	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163472.e.b	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.m #25	ENSGT00940000163927.a.a.n #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b
Poecilia	ANCESTRAL SPECIES	32	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163472.e.b	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.m #25	ENSGT00940000163927.a.a.n #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b
NAME_6	ANCESTRAL SPECIES	53	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163472.e.b	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.m #25	ENSGT00940000163927.a.a.n #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b
Amazon molly	MODERN SPECIES	293	ENSPFOG00000008187	shbg (ENSPFOG00000008200)	NEURL4 (ENSPFOG00000008290)	ENSPFOG00000008755	ENSPFOG00000009127	zpax4 (ENSPFOG00000009333) #34	zpax4 (ENSPFOG00000023766) #34	ENSPFOG00000009429	ENSPFOG00000009434 #15	ENSPFOG00000009503 #16	SLC16A13 (ENSPFOG00000009560) #17	acap1 (ENSPFOG00000009687) #18	agfg2 (ENSPFOG00000010128) #19	ENSPFOG00000010170 #20	si:ch73-335l21.4 (ENSPFOG00000010185) #21	dvl2 (ENSPFOG00000010190) #22	acadvl (ENSPFOG00000010335) #23	ENSPFOG00000010654	ponzr1 (ENSPFOG00000010662) #25	ponzr1 (ENSPFOG00000021825) #25	ENSPFOG00000010686 #26	ENSPFOG00000010831 #27	cnpy4 (ENSPFOG00000010908) #28	ENSPFOG00000010952 #29	ENSPFOG00000011090 ##30	pcolceb (ENSPFOG00000011106)	per1b (ENSPFOG00000011185)	RELL1 (ENSPFOG00000022963)	ENSPFOG00000020015	NWD2 (ENSPFOG00000011365)	ENSPFOG00000011416
Sailfin molly	MODERN SPECIES	149														si:ch73-335l21.4 (ENSPLAG00000018033) #21	si:ch73-335l21.2 (ENSPLAG00000018017)	dvl2 (ENSPLAG00000018005) #22	acadvl (ENSPLAG00000017994) #23	ENSPLAG00000017986	ponzr1 (ENSPLAG00000017980) #25	ponzr1 (ENSPLAG00000017974) #25	ENSPLAG00000017959 #26	ENSPLAG00000017911 #27	cnpy4 (ENSPLAG00000017314) #28	ENSPLAG00000000393 #29	ENSPLAG00000017299 ##30	pcolceb (ENSPLAG00000017294)	per1b (ENSPLAG00000017288)	ENSPLAG00000017214	ENSPLAG00000017206	NWD2 (ENSPLAG00000017199)
Guppy	MODERN SPECIES	448	shbg (ENSPREG00000013062)	NEURL4 (ENSPREG00000012931)	ENSPREG00000012848	ENSPREG00000012816	zpax4 (ENSPREG00000012721) #34	ENSPREG00000012700	ENSPREG00000012690	ENSPREG00000012669 #15	BCL6B (ENSPREG00000012637) #16	SLC16A13 (ENSPREG00000012622) #17	acap1 (ENSPREG00000012359) #18	agfg2 (ENSPREG00000012301) #19	ENSPREG00000012280	ENSPREG00000012240 #20	si:ch73-335l21.4 (ENSPREG00000012223) #21	dvl2 (ENSPREG00000012205) #22	acadvl (ENSPREG00000012139) #23	ENSPREG00000012122	ponzr1 (ENSPREG00000012099) #25	ponzr1 (ENSPREG00000012038) #25	ENSPREG00000011984 #26	ENSPREG00000011946 #27	cnpy4 (ENSPREG00000011908) #28	ENSPREG00000011778 #29	ENSPREG00000011735 ##30	pcolceb (ENSPREG00000011709)	per1b (ENSPREG00000011641)	RELL1 (ENSPREG00000011610)	ENSPREG00000011599	NWD2 (ENSPREG00000011567)	ENSPREG00000011525
Platyfish	MODERN SPECIES	5	POLR2A (ENSXMAG00000015687)	ENSXMAG00000021013	shbg (ENSXMAG00000015677)	NEURL4 (ENSXMAG00000015663)	ENSXMAG00000015633	ENSXMAG00000015629	zpax4 (ENSXMAG00000015623) #34	ENSXMAG00000020934 #15	ENSXMAG00000015613 #16	SLC16A13 (ENSXMAG00000015596) #17	acap1 (ENSXMAG00000015536) #18	agfg2 (ENSXMAG00000029833) #19	ENSXMAG00000015527 #20	si:ch73-335l21.4 (ENSXMAG00000024596) #21	si:ch73-335l21.2 (ENSXMAG00000025095)	dvl2 (ENSXMAG00000015501) #22	acadvl (ENSXMAG00000015425) #23	ENSXMAG00000015421	ponzr1 (ENSXMAG00000022829) #25	ponzr1 (ENSXMAG00000022482) #25	ENSXMAG00000015396 #26	ENSXMAG00000026871 #27	cnpy4 (ENSXMAG00000015373) #28	ENSXMAG00000015348 #29	ENSXMAG00000015347 ##30	pcolceb (ENSXMAG00000027902)	per1b (ENSXMAG00000015314)	ENSXMAG00000030074	ENSXMAG00000026248	RELL1 (ENSXMAG00000015308)	ENSXMAG00000015305
NAME_4	ANCESTRAL SPECIES	92	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163472.e.b	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.m #25	ENSGT00940000163927.a.a.n #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
Sheepshead minnow	MODERN SPECIES	305	shbg (ENSCVAG00000005204)	NEURL4 (ENSCVAG00000005235)	ENSCVAG00000005345	ENSCVAG00000005386	zpax4 (ENSCVAG00000005399) #34	ENSCVAG00000005404	ENSCVAG00000005417	ENSCVAG00000005434 #15	ENSCVAG00000005449 #16	SLC16A13 (ENSCVAG00000005457) #17	acap1 (ENSCVAG00000000802) #18	agfg2 (ENSCVAG00000005503) #19	ENSCVAG00000005515 #20	si:ch73-335l21.4 (ENSCVAG00000005519) #21	si:ch73-335l21.2 (ENSCVAG00000005532)	dvl2 (ENSCVAG00000005544) #22	acadvl (ENSCVAG00000005610) #23	ENSCVAG00000005617	ponzr1 (ENSCVAG00000005629) #25	ponzr1 (ENSCVAG00000005635) #25	ponzr1 (ENSCVAG00000005648) #25	ENSCVAG00000005656 #26	ENSCVAG00000005665 #27	cnpy4 (ENSCVAG00000005696) #28	ENSCVAG00000005729 #29	ENSCVAG00000005736 ##30	pcolceb (ENSCVAG00000005741)	per1b (ENSCVAG00000005799)	rell1 (ENSCVAG00000005817)	ENSCVAG00000005820	NWD2 (ENSCVAG00000005860)
Mummichog	MODERN SPECIES	2336	ENSFHEG00000001701	ENSFHEG00000001691	zpax4 (ENSFHEG00000001684) #34	ENSFHEG00000001679 ##30	ENSFHEG00000001676	ENSFHEG00000000055	ENSFHEG00000001669 #15	BCL6B (ENSFHEG00000001661) #16	SLC16A13 (ENSFHEG00000001648) #17	ENSFHEG00000001644	ENSFHEG00000001642 #18	agfg2 (ENSFHEG00000001636) #19	ENSFHEG00000001626 #20	si:ch73-335l21.4 (ENSFHEG00000001620) #21	si:ch73-335l21.2 (ENSFHEG00000001618)	dvl2 (ENSFHEG00000001612) #22	acadvl (ENSFHEG00000001586) #23	ENSFHEG00000001575	ponzr1 (ENSFHEG00000001573) #25	ENSFHEG00000001570 ##26	ENSFHEG00000001557 #27	ENSFHEG00000001550	cnpy4 (ENSFHEG00000001548) #28	ENSFHEG00000001541	ENSFHEG00000001539 ##30
Aplocheiloidei	DUPLICATION
Aplocheiloidei	ANCESTRAL SPECIES	68										ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i.c #22	ENSGT00950000182903.a.b.i.d #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT00940000153648.b	ENSGT00940000167169
Turquoise killifish	MODERN SPECIES	1613	tp53 (ENSNFUG00015001875)	ENSNFUG00015001862	Nfu_g_1_014152 (ENSNFUG00015001836)	POLR2A (ENSNFUG00015001784)	ENSNFUG00015001758	shbg (ENSNFUG00015001748)	NEURL4 (ENSNFUG00015001727)	ENSNFUG00015001294	ENSNFUG00015001211	SLC16A13 (ENSNFUG00015001209) #17	acap1 (ENSNFUG00015001148) #18	ENSNFUG00015001124	ENSNFUG00015001118 #20	si:ch73-335l21.4 (ENSNFUG00015001113) #21	si:ch73-335l21.2 (ENSNFUG00015001110)	ENSNFUG00015001106 #22	ENSNFUG00015001102 #26	ENSNFUG00015001098 #27	ENSNFUG00015001089	CNPY4 (ENSNFUG00015001081) #28	ENSNFUG00015001074 #29	OLA.1520 (ENSNFUG00015001067) ##30	pcolceb (ENSNFUG00015001053)	per1b (ENSNFUG00015001033)	RELL1 (ENSNFUG00015001013)	NWD2 (ENSNFUG00015000999)	ENSNFUG00015000990	PCDH7B (ENSNFUG00015000982)	ENSNFUG00015000971	ENSNFUG00015000969	ENSNFUG00015000968
Aplocheiloidei	ANCESTRAL SPECIES	68									ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i.c #22	ENSGT00950000182903.a.b.i.d #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT00940000153648.b	ENSGT00940000167169	ENSGT00940000157221.x
Mangrove rivulus	MODERN SPECIES	90						ENSKMAG00000009495	ppdpfb (ENSKMAG00000009515)	ENSKMAG00000009535	nol4lb (ENSKMAG00000009573)	ENSKMAG00000009584	SLC16A13 (ENSKMAG00000009596) #17	acap1 (ENSKMAG00000009620) #18	agfg2 (ENSKMAG00000009661) #19	ENSKMAG00000009700 #20	si:ch73-335l21.2 (ENSKMAG00000009713)	dvl2 (ENSKMAG00000009737) #22	acadvl (ENSKMAG00000009786) #23	ENSKMAG00000009869	ponzr1 (ENSKMAG00000009877) #25	ponzr1 (ENSKMAG00000009891) #25	ENSKMAG00000009901	ENSKMAG00000009927 #26	ENSKMAG00000009965 #27	ENSKMAG00000009983	cnpy4 (ENSKMAG00000010015) #28	ENSKMAG00000010035 #29	ENSKMAG00000010053 ##30	ENSKMAG00000010063	per1b (ENSKMAG00000010097)	RELL1 (ENSKMAG00000010228)	ENSKMAG00000010244
Turquoise killifish	MODERN SPECIES	395																dvl2 (ENSNFUG00015012251) #22	ACADVL (ENSNFUG00015011984) #23	CR376787.3 (ENSNFUG00015011944)
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00990000204615	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00990000204615	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
Tetraodontidae	ANCESTRAL SPECIES	29	ENSGT00940000175986	ENSGT00940000159305	ENSGT00930000151033	ENSGT00940000161268	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b	ENSGT00940000167169
Fugu	MODERN SPECIES	20	capgb (ENSTRUG00000024547)	POLR2A (ENSTRUG00000012320)	ENSTRUG00000012490	shbg (ENSTRUG00000012563)	NEURL4 (ENSTRUG00000012632)	ENSTRUG00000012888	ARHGEF15 (ENSTRUG00000013120)	ENSTRUG00000032936	ENSTRUG00000013176 #15	BCL6B (ENSTRUG00000013220) #16	SLC16A13 (ENSTRUG00000013229) #17	acap1 (ENSTRUG00000013366) #18	agfg2 (ENSTRUG00000023818) #19	ENSTRUG00000023735 #20	si:ch73-335l21.4 (ENSTRUG00000025549) #21	dvl2 (ENSTRUG00000013550) #22	acadvl (ENSTRUG00000013710) #23	ENSTRUG00000013893	ponzr1 (ENSTRUG00000013896) #25	ENSTRUG00000027326 ##26	ENSTRUG00000014066 #27	cnpy4 (ENSTRUG00000014142) #28	ENSTRUG00000014351	ENSTRUG00000028673	pcolceb (ENSTRUG00000014354)	per1b (ENSTRUG00000014420)	rell1 (ENSTRUG00000022108)	ENSTRUG00000021077	NWD2 (ENSTRUG00000014613)	ENSTRUG00000014629	ENSTRUG00000014635
Tetraodon	MODERN SPECIES	14	ctdnep1a (ENSTNIG00000010142)	phf23b (ENSTNIG00000010143)	plscr3b (ENSTNIG00000010144)	tnk1 (ENSTNIG00000010145)	trmt44 (ENSTNIG00000010146)	GPR78 (ENSTNIG00000010147)	CPZ (ENSTNIG00000010148)	ENSTNIG00000010149	HMX1 (ENSTNIG00000010150)	ADRA2C (ENSTNIG00000010151)	SLC16A13 (ENSTNIG00000010152) #17	acap1 (ENSTNIG00000010153) #18	agfg2 (ENSTNIG00000010154) #19	ENSTNIG00000002043 #20	ENSTNIG00000010155	dvl2 (ENSTNIG00000010156) #22	acadvl (ENSTNIG00000010157) #23	ENSTNIG00000001266	ponzr1 (ENSTNIG00000010158) #25	ENSTNIG00000010159 #26	ENSTNIG00000010160 #27	cnpy4 (ENSTNIG00000006854) #28	ENSTNIG00000006853 #29	ENSTNIG00000006852	pcolceb (ENSTNIG00000006851)	ENSTNIG00000007200 ##30	pcolceb (ENSTNIG00000007199)	per1b (ENSTNIG00000007198)	rell1 (ENSTNIG00000007197)	ENSTNIG00000007196	ENSTNIG00000000703
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00990000204615	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
Ballan wrasse	MODERN SPECIES	23	ENSLBEG00000027855	ENSLBEG00000027908	zpax4 (ENSLBEG00000027932) #34	zpax4 (ENSLBEG00000027955) #34	zpax4 (ENSLBEG00000027975) #34	ENSLBEG00000028010	ENSLBEG00000028059	ENSLBEG00000028069 #15	BCL6B (ENSLBEG00000028080) #16	SLC16A13 (ENSLBEG00000028091) #17	acap1 (ENSLBEG00000028135) #18	ENSLBEG00000028200	ENSLBEG00000028212 #20	si:ch73-335l21.4 (ENSLBEG00000028217) #21	si:ch73-335l21.2 (ENSLBEG00000028220)	dvl2 (ENSLBEG00000028224) #22	acadvl (ENSLBEG00000028251) #23	ENSLBEG00000028272	ponzr1 (ENSLBEG00000028275) #25	ENSLBEG00000028280 #26	ENSLBEG00000028290 #27	ENSLBEG00000028302	cnpy4 (ENSLBEG00000028306) #28	ENSLBEG00000028314 #29	per1b (ENSLBEG00000028344)	ENSLBEG00000028352 ##30	ENSLBEG00000028354 ##30	ENSLBEG00000028355 ##30	pcolceb (ENSLBEG00000028362)	rell1 (ENSLBEG00000028367)	ENSLBEG00000028381
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00990000204615	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00990000204615	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00990000204615	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
European seabass	MODERN SPECIES	16	ENSDLAG00005009038	shbg (ENSDLAG00005009083)	ENSDLAG00005009114	ENSDLAG00005009415	ENSDLAG00005011572	ENSDLAG00005017192 #34	ENSDLAG00005011650 #34	ENSDLAG00005011670	ENSDLAG00005011689 #15	ENSDLAG00005011710 #16	ENSDLAG00005011717 #17	acap1 (ENSDLAG00005011773) #18	agfg2 (ENSDLAG00005035081) #19	si:ch73-335l21.4 (ENSDLAG00005027260) #21	si:ch73-335l21.2 (ENSDLAG00005013123)	dvl2 (ENSDLAG00005013146) #22	acadvl (ENSDLAG00005013699) #23	ENSDLAG00005014883	ENSDLAG00005033537	ponzr1 (ENSDLAG00005030607) #25	ENSDLAG00005014891 #26	ENSDLAG00005029560 #27	ENSDLAG00005014916	cnpy4 (ENSDLAG00005014925) #28	ENSDLAG00005014943 #29	ENSDLAG00005014985 ##30	ENSDLAG00005015002	ENSDLAG00005015012	ENSDLAG00005015065	RELL1 (ENSDLAG00005031395)	ENSDLAG00005015789
Large yellow croaker	MODERN SPECIES	485	shbg (ENSLCRG00005005640)	NEURL4 (ENSLCRG00005005959)	ENSLCRG00005006956	ENSLCRG00005007293	zpax4 (ENSLCRG00005007445) #34	ENSLCRG00005007632	ENSLCRG00005007684	ENSLCRG00005007700 #15	ENSLCRG00005007717 #16	SLC16A13 (ENSLCRG00005007720) #17	acap1 (ENSLCRG00005007818) #18	agfg2 (ENSLCRG00005007925) #19	ENSLCRG00005007958 #20	si:ch73-335l21.4 (ENSLCRG00005007990) #21	si:ch73-335l21.2 (ENSLCRG00005008004)	dvl2 (ENSLCRG00005008034) #22	acadvl (ENSLCRG00005008338) #23	ENSLCRG00005009390	ponzr1 (ENSLCRG00005009426) #25	ponzr1 (ENSLCRG00005009455) #25	ENSLCRG00005009470 #26	ENSLCRG00005009490 #27	ENSLCRG00005009516	cnpy4 (ENSLCRG00005009556) #28	ENSLCRG00005009619 #29	ENSLCRG00005009701 ##30	ENSLCRG00005009713	ENSLCRG00005009723 ##30	pcolceb (ENSLCRG00005009731)	per1b (ENSLCRG00005009853)	rell1 (ENSLCRG00005009951)
Perciformes	ANCESTRAL SPECIES	19	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370.h #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370.h #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b
Pike perch	MODERN SPECIES	147	shbg (ENSSLUG00000016947)	NEURL4 (ENSSLUG00000016363)	ENSSLUG00000014180	ENSSLUG00000014052	zpax4 (ENSSLUG00000014001) #34	ENSSLUG00000013984	ENSSLUG00000013976	ENSSLUG00000013967 #15	BCL6B (ENSSLUG00000013957) #16	SLC16A13 (ENSSLUG00000013953) #17	acap1 (ENSSLUG00000013809) #18	agfg2 (ENSSLUG00000013776) #19	ENSSLUG00000013770 #20	ENSSLUG00000013757 #21	si:ch73-335l21.2 (ENSSLUG00000013747)	dvl2 (ENSSLUG00000013613) #22	acadvl (ENSSLUG00000011111) #23	ENSSLUG00000010997	ponzr1 (ENSSLUG00000010992) #25	ENSSLUG00000010984 #26	ENSSLUG00000010902 #27	ENSSLUG00000010892	cnpy4 (ENSSLUG00000010885) #28	ENSSLUG00000010870 #29	ENSSLUG00000010865 ##30	pcolceb (ENSSLUG00000010820)	per1b (ENSSLUG00000010714)	ENSSLUG00000010678
Channel bull blenny	MODERN SPECIES	9	ENSCGOG00000007275	shbg (ENSCGOG00000007281)	NEURL4 (ENSCGOG00000007296)	ENSCGOG00000007484	ENSCGOG00000007951	ENSCGOG00000007967	ENSCGOG00000007979 #15	ENSCGOG00000007986	BCL6B (ENSCGOG00000007989) #16	SLC16A13 (ENSCGOG00000007991) #17	acap1 (ENSCGOG00000008011) #18	agfg2 (ENSCGOG00000008274) #19	ENSCGOG00000008276 #20	si:ch73-335l21.4 (ENSCGOG00000008281) #21	si:ch73-335l21.2 (ENSCGOG00000008284)	dvl2 (ENSCGOG00000008312) #22	acadvl (ENSCGOG00000008965) #23	ENSCGOG00000009793	ponzr1 (ENSCGOG00000009796) #25	ENSCGOG00000009802 #26	ENSCGOG00000009809 #27	cnpy4 (ENSCGOG00000009825) #28	ENSCGOG00000009835 #29	ENSCGOG00000009900 ##30	pcolceb (ENSCGOG00000009905)	per1b (ENSCGOG00000009956)	rell1 (ENSCGOG00000010169)	ENSCGOG00000010170	NWD2 (ENSCGOG00000010171)	ENSCGOG00000010175	ENSCGOG00000010182
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00930000151033	ENSGT00940000161268	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370.h #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b
Lumpfish	MODERN SPECIES	9	POLR2A (ENSCLMG00005014945)	ENSCLMG00005014943	shbg (ENSCLMG00005014942)	NEURL4 (ENSCLMG00005014940)	ENSCLMG00005012986	ENSCLMG00005012963	ENSCLMG00005012959	ENSCLMG00005012957 #15	BCL6B (ENSCLMG00005012956) #16	SLC16A13 (ENSCLMG00005012954) #17	acap1 (ENSCLMG00005012923) #18	agfg2 (ENSCLMG00005012922) #19	ENSCLMG00005012921 #20	si:ch73-335l21.4 (ENSCLMG00005012920) #21	si:ch73-335l21.2 (ENSCLMG00005012919)	dvl2 (ENSCLMG00005012796) #22	ENSCLMG00005012650	ENSCLMG00005012505	ENSCLMG00005012504	ENSCLMG00005012502	ENSCLMG00005012463	PTGDR2 (ENSCLMG00005012461)	ENSCLMG00005012460	ugt5g2 (ENSCLMG00005012459)	ponzr3 (ENSCLMG00005012458)	ENSCLMG00005012456	cldn7a (ENSCLMG00005012455)	chrnb1l (ENSCLMG00005012401)	chrnb1 (ENSCLMG00005012312)	fgf11a (ENSCLMG00005012311)	tmem102 (ENSCLMG00005012310)
Stickleback	MODERN SPECIES	7	capgb (ENSGACG00000019370)	POLR2A (ENSGACG00000019366)	shbg (ENSGACG00000019365)	NEURL4 (ENSGACG00000019362)	ENSGACG00000019361	ENSGACG00000019360	ENSGACG00000019358	ENSGACG00000019355	ENSGACG00000019354	ENSGACG00000019350 #15	BCL6B (ENSGACG00000019349) #16	SLC16A13 (ENSGACG00000019347) #17	acap1 (ENSGACG00000019339) #18	ENSGACG00000019338 #20	ENSGACG00000019337 #20	dvl2 (ENSGACG00000019331) #22	acadvl (ENSGACG00000019329) #23	ENSGACG00000019328	ponzr1 (ENSGACG00000019326) #25	ponzr1 (ENSGACG00000019324) #25	ENSGACG00000019319 #26	ENSGACG00000019318 #27	cnpy4 (ENSGACG00000019316) #28	ENSGACG00000019314 #29	pcolceb (ENSGACG00000019312)	per1b (ENSGACG00000019308)	RELL1 (ENSGACG00000019306)	NWD2 (ENSGACG00000019305)	ENSGACG00000019304	DTHD1 (ENSGACG00000019301)	ENSGACG00000019300
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00990000204615	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00940000161268.l	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.b #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT01030000234567.B.a.b.a.a	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00990000204615	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b
Anabantoidei	ANCESTRAL SPECIES	24	ENSGT00940000161268.l	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00990000204615	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b
Climbing perch	MODERN SPECIES	9	ENSATEG00000019644	ENSATEG00000027847	shbg (ENSATEG00000030089)	ENSATEG00000019768	ENSATEG00000019877	ENSATEG00000019994	ENSATEG00000020092	ENSATEG00000020103 #15	ENSATEG00000020121 #16	ENSATEG00000020132 #17	acap1 (ENSATEG00000020155) #18	agfg2 (ENSATEG00000027183) #19	ENSATEG00000020267 #20	si:ch73-335l21.4 (ENSATEG00000020316) #21	si:ch73-335l21.2 (ENSATEG00000020324)	dvl2 (ENSATEG00000029535) #22	acadvl (ENSATEG00000000024) #23	ENSATEG00000000171	ponzr1 (ENSATEG00000025198) #25	ponzr1 (ENSATEG00000028327) #25	ponzr1 (ENSATEG00000000277) #25	ENSATEG00000030189	ENSATEG00000000290 #26	ENSATEG00000000297 #27	cnpy4 (ENSATEG00000000305) #28	ENSATEG00000000312 #29	ENSATEG00000000331 ##30	ENSATEG00000028316	ENSATEG00000000342	ENSATEG00000000356	RELL1 (ENSATEG00000000367)
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000009056	shbg (ENSBSLG00000008946)	ENSBSLG00000008162	ENSBSLG00000008144	zpax4 (ENSBSLG00000008099) #34	zpax4 (ENSBSLG00000008086) #34	ENSBSLG00000008072	ENSBSLG00000008057 #15	BCL6B (ENSBSLG00000008043) #16	SLC16A13 (ENSBSLG00000008024) #17	acap1 (ENSBSLG00000007907) #18	ENSBSLG00000007800	ENSBSLG00000007752 #20	si:ch73-335l21.4 (ENSBSLG00000007731) #21	si:ch73-335l21.2 (ENSBSLG00000007707)	dvl2 (ENSBSLG00000007703) #22	acadvl (ENSBSLG00000006887) #23	ENSBSLG00000005778	ponzr1 (ENSBSLG00000005772) #25	ponzr1 (ENSBSLG00000005759) #25	ENSBSLG00000005661 #26	ENSBSLG00000005631 #27	cnpy4 (ENSBSLG00000005604) #28	ENSBSLG00000005514 #29	ENSBSLG00000005463 ##30	ENSBSLG00000005443 ##30	ENSBSLG00000005381 ##30	ENSBSLG00000005348	pcolceb (ENSBSLG00000005246)	per1b (ENSBSLG00000004934)	rell1 (ENSBSLG00000004861)
Zig-zag eel	MODERN SPECIES	9	ENSMAMG00000003351	ENSMAMG00000003283	shbg (ENSMAMG00000003273)	ENSMAMG00000003141	ENSMAMG00000003035	ENSMAMG00000003016	ENSMAMG00000002955 #34	ENSMAMG00000002891 #15	ENSMAMG00000002865 #16	ENSMAMG00000002851 #17	acap1 (ENSMAMG00000002823) #18	agfg2 (ENSMAMG00000002798) #19	ENSMAMG00000002780 #20	si:ch73-335l21.4 (ENSMAMG00000002769) #21	si:ch73-335l21.2 (ENSMAMG00000002760)	dvl2 (ENSMAMG00000002751) #22	acadvl (ENSMAMG00000002689) #23	ENSMAMG00000002674	ponzr1 (ENSMAMG00000027885) #25	ENSMAMG00000002637 #26	ENSMAMG00000002287 #27	ENSMAMG00000001953	cnpy4 (ENSMAMG00000001907) #28	ENSMAMG00000001649 #29	ENSMAMG00000025692 ##30	ENSMAMG00000001473	ENSMAMG00000001379	RELL1 (ENSMAMG00000001360)	ENSMAMG00000025977	NWD2 (ENSMAMG00000001275)	ENSMAMG00000001243
Carangaria	ANCESTRAL SPECIES	20	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b	ENSGT00940000167169
Pleuronectoidei	ANCESTRAL SPECIES	17	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b	ENSGT00940000167169
Turbot	MODERN SPECIES	11	shbg (ENSSMAG00000009098)	ENSSMAG00000008874	ENSSMAG00000008790	ENSSMAG00000008739	ENSSMAG00000008693 #34	ENSSMAG00000008599 #34	ENSSMAG00000008560	ENSSMAG00000008546	ENSSMAG00000008475 #14	ENSSMAG00000008428 #16	ENSSMAG00000008415 #17	acap1 (ENSSMAG00000008356) #18	agfg2 (ENSSMAG00000008266) #19	ENSSMAG00000008255 #20	si:ch73-335l21.2 (ENSSMAG00000008249)	dvl2 (ENSSMAG00000008231) #22	acadvl (ENSSMAG00000008208) #23	ENSSMAG00000008220	ponzr1 (ENSSMAG00000008190) #25	ENSSMAG00000008158 #26	ENSSMAG00000008156 #27	cnpy4 (ENSSMAG00000008141) #28	ENSSMAG00000008116 #29	ENSSMAG00000022292 ##30	ENSSMAG00000008076	ENSSMAG00000008060	RELL1 (ENSSMAG00000008051)	ENSSMAG00000008047	NWD2 (ENSSMAG00000008034)	ENSSMAG00000007944	ENSSMAG00000007911
Tongue sole	MODERN SPECIES		exoc6b (ENSCSEG00000000942)	znhit1 (ENSCSEG00000000948)	ENSCSEG00000000955	ENSCSEG00000000975	ENSCSEG00000000984 #34	ENSCSEG00000001012 #34	ENSCSEG00000001026	ENSCSEG00000001031	ENSCSEG00000001037 #15	BCL6B (ENSCSEG00000001042) #16	acap1 (ENSCSEG00000001053) #18	SLC16A13 (ENSCSEG00000001061) #17	agfg2 (ENSCSEG00000001062) #19	si:ch73-335l21.4 (ENSCSEG00000001069) #21	si:ch73-335l21.2 (ENSCSEG00000001075)	dvl2 (ENSCSEG00000001081) #22	acadvl (ENSCSEG00000001165) #23	ENSCSEG00000001185	ponzr1 (ENSCSEG00000001188) #25	ENSCSEG00000001189 #26	ENSCSEG00000001197	ENSCSEG00000001203	ENSCSEG00000001213 #27	cnpy4 (ENSCSEG00000001284) #28	ENSCSEG00000001293 #29	ENSCSEG00000001301 ##30	pcolceb (ENSCSEG00000001304)	per1b (ENSCSEG00000001323)	rell1 (ENSCSEG00000001341)	ENSCSEG00000001346	NWD2 (ENSCSEG00000001352)
Carangaria_A	ANCESTRAL SPECIES	26	ENSGT00940000165567	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283 #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b	ENSGT00940000167169
Barramundi perch	MODERN SPECIES	151													ENSLCAG00010016910 #20	si:ch73-335l21.4 (ENSLCAG00010016904) #21	si:ch73-335l21.2 (ENSLCAG00010016903)	dvl2 (ENSLCAG00010016889) #22	acadvl (ENSLCAG00010016480) #23	ENSLCAG00010016401	ponzr1 (ENSLCAG00010016398) #25	ENSLCAG00010016393 #26	ENSLCAG00010016381 #27	cnpy4 (ENSLCAG00010016374) #28	ENSLCAG00010016372 #29	ENSLCAG00010016369 ##30	ENSLCAG00010016365 ##30	pcolceb (ENSLCAG00010016358)	per1b (ENSLCAG00010016329)	ENSLCAG00010016312	rell1 (ENSLCAG00010016305)	ENSLCAG00010016303	NWD2 (ENSLCAG00010016298)
Seriola	ANCESTRAL SPECIES	66	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a	ENSGT00940000166283.t #34	ENSGT00940000166283.s #34	ENSGT00940000163503.A.a.a.a	ENSGT00940000176070	ENSGT00940000156022.a #15	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT00940000158535 #23	ENSGT01020000230586	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000159264.f	ENSGT00940000159217	ENSGT00940000159709	ENSGT01010000222552	ENSGT00940000153648.b	ENSGT00940000153404.b	ENSGT00940000167169
Greater amberjack	MODERN SPECIES	117	NEURL4 (ENSSDUG00000020615)	ENSSDUG00000020694	ENSSDUG00000020747	zpax4 (ENSSDUG00000020766) #34	zpax4 (ENSSDUG00000020791) #34	ENSSDUG00000020822	ENSSDUG00000020858	ENSSDUG00000020867 #15	BCL6B (ENSSDUG00000020890) #16	SLC16A13 (ENSSDUG00000020904) #17	acap1 (ENSSDUG00000020937) #18	agfg2 (ENSSDUG00000021169) #19	ENSSDUG00000021213 #20	si:ch73-335l21.4 (ENSSDUG00000021252) #21	si:ch73-335l21.2 (ENSSDUG00000021254)	dvl2 (ENSSDUG00000021261) #22	acadvl (ENSSDUG00000021300) #23	ENSSDUG00000021350	ponzr1 (ENSSDUG00000021358) #25	ENSSDUG00000021364 #26	ENSSDUG00000021383 #27	cnpy4 (ENSSDUG00000021387) #28	ENSSDUG00000021396 #29	ENSSDUG00000021412 ##30	pcolceb (ENSSDUG00000021425)	per1b (ENSSDUG00000021452)	rell1 (ENSSDUG00000021532)	ENSSDUG00000021538	NWD2 (ENSSDUG00000021550)	DTHD1 (ENSSDUG00000021571)	ENSSDUG00000021586
Yellowtail amberjack	MODERN SPECIES	3023	NEURL4 (ENSSLDG00000020750)	ENSSLDG00000020807	ENSSLDG00000020863	zpax4 (ENSSLDG00000020902) #34	zpax4 (ENSSLDG00000021045) #34	ENSSLDG00000021081	ENSSLDG00000021115	ENSSLDG00000021125 #15	ENSSLDG00000021148 #16	SLC16A13 (ENSSLDG00000021211) #17	acap1 (ENSSLDG00000021232) #18	agfg2 (ENSSLDG00000021280) #19	ENSSLDG00000021318 #20	si:ch73-335l21.4 (ENSSLDG00000021327) #21	si:ch73-335l21.2 (ENSSLDG00000021331)	dvl2 (ENSSLDG00000021340) #22	acadvl (ENSSLDG00000021367) #23	ENSSLDG00000021442	ponzr1 (ENSSLDG00000021451) #25	ENSSLDG00000021519 #27	cnpy4 (ENSSLDG00000022035) #28	ENSSLDG00000022088 #29	ENSSLDG00000022215 ##30	pcolceb (ENSSLDG00000022227)	per1b (ENSSLDG00000022250)	rell1 (ENSSLDG00000022313)	ENSSLDG00000022324	NWD2 (ENSSLDG00000022343)	DTHD1 (ENSSLDG00000022370)	ENSSLDG00000022450	PCDH7 (ENSSLDG00000022483)
Protacanthopterygii	ANCESTRAL SPECIES	20	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00940000154658.a	ENSGT00950000182886.a.b	ENSGT01090000260185.a	ENSGT00940000154273.b #14	ENSGT00940000159844 #16	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370 #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i #22	ENSGT01100000263613 #24	ENSGT00940000163927.a.a.v #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000163927.a.a.u #25	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a #29	ENSGT00940000165960.b ##30	ENSGT00940000167107 #31	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00440000037582	ENSGT00940000158001
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	23	MPDZ (ENSELUG00000017678)	ADGRL3 (ENSELUG00000017939)	ENSELUG00000026228	ENSELUG00000018451	ENSELUG00000018661	ENSELUG00000026966	ENSELUG00000018725 #15	BCL6B (ENSELUG00000018787) #16	SLC16A13 (ENSELUG00000018819) #17	acap1 (ENSELUG00000018894) #18	agfg2 (ENSELUG00000018937) #19	ENSELUG00000018954 #20	si:ch73-335l21.4 (ENSELUG00000018979) #21	dvl2 (ENSELUG00000019029) #22	ENSELUG00000019044	ENSELUG00000027323 #22	ENSELUG00000019034	ENSELUG00000019093 #24	ponzr1 (ENSELUG00000019120) #25	ponzr1 (ENSELUG00000019130) #25	ENSELUG00000019155 #26	ENSELUG00000019206 #27	cnpy4 (ENSELUG00000019246) #28	ENSELUG00000019259 #29	ENSELUG00000019296 ##30	ENSELUG00000031501 ##30	zgc:103586 (ENSELUG00000019315) #31	fis1 (ENSELUG00000019347)	cldn15a (ENSELUG00000019355)	dnajc3b (ENSELUG00000019390)	naa38 (ENSELUG00000031744)
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	23	TYRP1 (ENSELUG00000017554)	LURAP1L (ENSELUG00000000688)	MPDZ (ENSELUG00000017678)	ADGRL3 (ENSELUG00000017939)	ENSELUG00000026228	ENSELUG00000018451	ENSELUG00000018661	ENSELUG00000026966	ENSELUG00000018725 #15	BCL6B (ENSELUG00000018787) #16	SLC16A13 (ENSELUG00000018819) #17	acap1 (ENSELUG00000018894) #18	agfg2 (ENSELUG00000018937) #19	ENSELUG00000018954 #20	si:ch73-335l21.4 (ENSELUG00000018979) #21	dvl2 (ENSELUG00000019029) #22	ENSELUG00000019044	ENSELUG00000027323 #22	ENSELUG00000019034	ENSELUG00000019093 #24	ponzr1 (ENSELUG00000019120) #25	ponzr1 (ENSELUG00000019130) #25	ENSELUG00000019155 #26	ENSELUG00000019206 #27	cnpy4 (ENSELUG00000019246) #28	ENSELUG00000019259 #29	ENSELUG00000019296 ##30	ENSELUG00000031501 ##30	zgc:103586 (ENSELUG00000019315) #31	fis1 (ENSELUG00000019347)	cldn15a (ENSELUG00000019355)
Northern pike	MODERN SPECIES	6	SPNS2 (ENSELUG00000008192)	ENSELUG00000008138	ENSELUG00000000297	fis1 (ENSELUG00000008092)	ENSELUG00000025227	ENSELUG00000008020	ENSELUG00000007981	ENSELUG00000031227	ENSELUG00000008004	cldn15b (ENSELUG00000007924)	sat2 (ENSELUG00000007897) ##36	ENSELUG00000007789 ##30	taf6 (ENSELUG00000007773)	ENSELUG00000007738	ENSELUG00000007711	DVL2 (ENSELUG00000001467) #22	acadvl (ENSELUG00000007636) #23	ENSELUG00000007581	klf5l (ENSELUG00000007518)	klf8 (ENSELUG00000007479)	cldn2 (ENSELUG00000007390)	rbm41 (ENSELUG00000007426)	PRRG3 (ENSELUG00000007351)	ENSELUG00000027456	ENSELUG00000007333	ENSELUG00000007289	ENSELUG00000007235	ENSELUG00000027175	ZPLD1 (ENSELUG00000007186)	alcama (ENSELUG00000007135)	CBLB (ENSELUG00000007002)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	256	ENSGT00940000153617.B.h	ENSGT00940000155804.k.a.a	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a	ENSGT00940000154658.a.d	ENSGT00940000156022.a.c.b #15	ENSGT01090000260185.a	ENSGT00940000156022.a.c.a #15	ENSGT00940000159844.h #16	ENSGT00940000160289.l #18	ENSGT00940000161071.i #19	ENSGT00940000166370.f #20	ENSGT00730000112287.h #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i.g.a #22	ENSGT00940000158535 #23	ENSGT00940000154838.A.f.b.b	ENSGT00940000164016.e	ENSGT00940000161062.c.b	ENSGT00940000160785	ENSGT00940000161538	ENSGT00940000160946
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a	ENSGT00940000154658.a.d	ENSGT00940000156022.a.c.b #15	ENSGT01090000260185.a.a	ENSGT01090000260185.a.b	ENSGT00940000154273.b.h #14	ENSGT00940000156022.a.c.a #15	ENSGT00940000159844.h #16	ENSGT00940000160289.l #18	ENSGT00940000161071.i #19	ENSGT00940000166370.f #20	ENSGT00730000112287.h #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i.g.a #22	ENSGT00730000112044.e.a.b	ENSGT01100000263613.c #24	ENSGT00940000163927.a.a.v.b #25	ENSGT00940000153491.b.b.b.c #26	ENSGT00940000166316.e #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a.a #29	ENSGT00940000165960.b ##30	ENSGT00940000167107 #31	ENSGT00390000000592.w.b	ENSGT00940000165100.b.c	ENSGT00940000165987.b	ENSGT00390000018418.j	ENSGT00440000037582.n.a	ENSGT00940000158001.h
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000155804.k.a.a	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a	ENSGT00940000154658.a.d	ENSGT00940000156022.a.c.b #15	ENSGT01090000260185.a.a	ENSGT00940000154273.b.h.a #14	ENSGT00940000156022.a.c.a #15	ENSGT00940000159844.h #16	ENSGT00940000160289.l #18	ENSGT00940000161071.i #19	ENSGT00940000166370.f #20	ENSGT00730000112287.h #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i.g.a #22	ENSGT00730000112044.e.a.b	ENSGT01100000263613.c #24	ENSGT00940000163927.a.a.u #25	ENSGT00940000153491.b.b.b.c #26	ENSGT00940000166316.e #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a.a #29	ENSGT00940000165960.b ##30	ENSGT00940000167107 #31	ENSGT00390000000592.w.b	ENSGT00940000165100.b.c	ENSGT00940000165987.b	ENSGT00390000018418.j.a	ENSGT00940000158001.h.a	ENSGT00510000050706.d #37
Oncorhynchus_a	ANCESTRAL SPECIES	239								ENSGT00940000154273.b.h.a #14	ENSGT00940000156022.a.c.a #15	ENSGT00940000159844.h #16	ENSGT00940000160289.l #18	ENSGT00940000161071.i #19	ENSGT00940000166370.f #20	ENSGT00730000112287.h #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i.g.a #22	ENSGT00980000199875.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	55							ADGRL3 (ENSOTSG00005042055)	ENSOTSG00005046578	TRIP6 (ENSOTSG00005046586) #14	ENSOTSG00005046589 #15	BCL6B (ENSOTSG00005046590) #16	acap1 (ENSOTSG00005046591) #18	agfg2 (ENSOTSG00005046596) #19	ENSOTSG00005046598 #20	si:ch73-335l21.4 (ENSOTSG00005046600) #21	dvl2 (ENSOTSG00005046604) #22	ENSOTSG00005046662	ENSOTSG00005046664 #24	ponzr1 (ENSOTSG00005046665) #25	ENSOTSG00005046667 #27	cnpy4 (ENSOTSG00005046668) #28	ENSOTSG00005046669 #29	ENSOTSG00005046670 ##30	zgc:103586 (ENSOTSG00005046671) #31	fis1 (ENSOTSG00005046672)	cldn15a (ENSOTSG00005046673)	dnajc3b (ENSOTSG00005046674)	naa38 (ENSOTSG00005046684)	ENSOTSG00005046685	CHD3 (ENSOTSG00005046688)	tnfsf12 (ENSOTSG00005047009) #37
Chinook salmon	MODERN SPECIES	40					ADGRL3 (ENSOTSG00005041695)	ENSOTSG00005041609	ENSOTSG00005041603	ENSOTSG00005041601 #15	ENSOTSG00005041600 #15	BCL6B (ENSOTSG00005041595) #16	acap1 (ENSOTSG00005037711) #18	agfg2 (ENSOTSG00005037693) #19	ENSOTSG00005037692 #20	si:ch73-335l21.4 (ENSOTSG00005037688) #21	si:ch73-335l21.2 (ENSOTSG00005037687)	dvl2 (ENSOTSG00005037686) #22	ENSOTSG00005037678	ENSOTSG00005037674 #24	ponzr1 (ENSOTSG00005037672) #25	ENSOTSG00005037670 #27	cnpy4 (ENSOTSG00005037667) #28	ENSOTSG00005037666 #29	ENSOTSG00005037665 ##30	zgc:103586 (ENSOTSG00005037662) #31	fis1 (ENSOTSG00005037660)	cldn15a (ENSOTSG00005037658)	dnajc3b (ENSOTSG00005037588)	naa38 (ENSOTSG00005037586)	ENSOTSG00005037585	CHD3 (ENSOTSG00005036981)	tnfsf12 (ENSOTSG00005036976) #37
Coho salmon	MODERN SPECIES	29	ENSOKIG00005047144	PTPRD (ENSOKIG00005029261)	TYRP1 (ENSOKIG00005028467)	LURAP1L (ENSOKIG00005028452)	MPDZ (ENSOKIG00005022843)	ADGRL3 (ENSOKIG00005016342)	ENSOKIG00005016099	ENSOKIG00005015595	ENSOKIG00005015528	ENSOKIG00005015469 #15	BCL6B (ENSOKIG00005015446) #16	acap1 (ENSOKIG00005015336) #18	agfg2 (ENSOKIG00005015299) #19	ENSOKIG00005015281 #20	si:ch73-335l21.4 (ENSOKIG00005015257) #21	dvl2 (ENSOKIG00005015058) #22	ENSOKIG00005015036	ENSOKIG00005015029 #24	ENSOKIG00005015027	ponzr1 (ENSOKIG00005015022) #25	ENSOKIG00005015014 #26	ENSOKIG00005015002 #27	cnpy4 (ENSOKIG00005014994) #28	ENSOKIG00005014989 #29	ENSOKIG00005014984 ##30	zgc:103586 (ENSOKIG00005014965) #31	fis1 (ENSOKIG00005014935)	cldn15a (ENSOKIG00005014925)	dnajc3b (ENSOKIG00005014812)	naa38 (ENSOKIG00005014793)	ENSOKIG00005014781
Rainbow trout	MODERN SPECIES	13	MPDZ (ENSOMYG00000043957)	ENSOMYG00000034945	ENSOMYG00000033362	ENSOMYG00000033004	ENSOMYG00000032995	ENSOMYG00000055106 #14	ENSOMYG00000032987	ENSOMYG00000032944 #14	ENSOMYG00000032847 #16	acap1 (ENSOMYG00000030898) #18	ENSOMYG00000071940	agfg2 (ENSOMYG00000030472) #19	ENSOMYG00000030390 #20	si:ch73-335l21.4 (ENSOMYG00000030444) #21	ENSOMYG00000018086	dvl2 (ENSOMYG00000030433) #22	ENSOMYG00000030413	ENSOMYG00000030370 #24	ponzr1 (ENSOMYG00000049606) #25	ENSOMYG00000050850	ENSOMYG00000065068 #26	ENSOMYG00000030360 #27	cnpy4 (ENSOMYG00000030339) #28	ENSOMYG00000030332	ENSOMYG00000030322 #29	ENSOMYG00000050442 ##30	zgc:103586 (ENSOMYG00000030282) #31	fis1 (ENSOMYG00000030252)	ENSOMYG00000030212	dnajc3b (ENSOMYG00000030162)	ENSOMYG00000030086
Salmo	ANCESTRAL SPECIES	49	ENSGT00940000155804.k.a.a	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a	ENSGT00940000154658.a.d	ENSGT00940000156022.a.c.b #15	ENSGT01090000260185.a.a	ENSGT00940000154273.b.h #14	ENSGT01090000260185.a.b	ENSGT00940000156022.a.c.a #15	ENSGT00940000159844.h #16	ENSGT00940000160289.l #18	ENSGT00940000155511.m	ENSGT00940000166370.f #20	ENSGT00730000112287.h #21	ENSGT00950000182903.a.b.i.g.a #22	ENSGT00940000158535.w #23	ENSGT00730000112044.e.a.b	ENSGT01100000263613.c #24	ENSGT00940000163927.a.a.v.b #25	ENSGT00940000153491.b.b.b.c #26	ENSGT00940000166316.e #27	ENSGT00390000014072.B #28	ENSGT00940000156128.a.a #29	ENSGT00940000165960.b ##30	ENSGT00940000167107 #31	ENSGT00390000000592.w.b	ENSGT00940000165100.b.c	ENSGT00940000165987.b	ENSGT00390000018418.j	ENSGT00440000037582.n.a
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000076592	ci150 (ENSSSAG00000076598)	ENSSSAG00000076710	ENSSSAG00000078516	ENSSSAG00000079215	ENSSSAG00000101481 #15	ENSSSAG00000079518	ENSSSAG00000109805 #14	ENSSSAG00000079541	ENSSSAG00000114456 #15	ENSSSAG00000079545 #16	acap1 (ENSSSAG00000087747) #18	ENSSSAG00000079568	ENSSSAG00000092192 #20	si:ch73-335l21.4 (ENSSSAG00000079580) #21	dvl2 (ENSSSAG00000079590) #22	ENSSSAG00000079609 #23	ENSSSAG00000079611	ENSSSAG00000079612 #24	ponzr1 (ENSSSAG00000104990) #25	ENSSSAG00000079617 #26	ENSSSAG00000108254	ENSSSAG00000079625 #27	cnpy4 (ENSSSAG00000079629) #28	ENSSSAG00000079632 #29	zgc:103586 (ENSSSAG00000079641) #31	ENSSSAG00000079648	ENSSSAG00000097741	dnajc3b (ENSSSAG00000079658)	NAA38 (ENSSSAG00000079665)	cyb5d1 (ENSSSAG00000079666)
River trout	MODERN SPECIES	38	USP53 (ENSSTUG00000043882)	PTPRD (ENSSTUG00000044156)	TYRP1 (ENSSTUG00000050648)	LURAP1L (ENSSTUG00000050649)	MPDZ (ENSSTUG00000050655)	ADGRL3 (ENSSTUG00000050737)	ENSSTUG00000051008	ENSSTUG00000051014 #15	ENSSTUG00000030551	ENSSTUG00000030569	BCL6B (ENSSTUG00000030577) #16	acap1 (ENSSTUG00000030593) #18	ENSSTUG00000030841	ENSSTUG00000030850 #20	si:ch73-335l21.4 (ENSSTUG00000030854) #21	dvl2 (ENSSTUG00000030865) #22	ENSSTUG00000031101	ENSSTUG00000031105 #24	ponzr1 (ENSSTUG00000031108) #25	ENSSTUG00000031117 #26	ENSSTUG00000031130 #27	cnpy4 (ENSSTUG00000031133) #28	ENSSTUG00000031140 ##30	zgc:103586 (ENSSTUG00000031150) #31	fis1 (ENSSTUG00000031167)	cldn15a (ENSSTUG00000031271)	dnajc3b (ENSSTUG00000031283)	naa38 (ENSSTUG00000031346)	cyb5d1 (ENSSTUG00000031358)	CHD3 (ENSSTUG00000031509)	tnfsf12 (ENSSTUG00000034203) #37
Huchen	MODERN SPECIES	503												ENSHHUG00000008833	ENSHHUG00000008822 #20	si:ch73-335l21.4 (ENSHHUG00000008813) #21	si:ch73-335l21.2 (ENSHHUG00000008791)	dvl2 (ENSHHUG00000008707) #22	ENSHHUG00000008689	ENSHHUG00000008685 #24	ponzr1 (ENSHHUG00000008684) #25	ENSHHUG00000008677 #26	ENSHHUG00000008643 #26	ENSHHUG00000008629 #26	ENSHHUG00000008626 #27	cnpy4 (ENSHHUG00000008620) #28	ENSHHUG00000008610 #29	ENSHHUG00000008605 ##30	zgc:103586 (ENSHHUG00000008585) #31	fis1 (ENSHHUG00000008549)	cldn15a (ENSHHUG00000008529)	dnajc3b (ENSHHUG00000008435)	naa38 (ENSHHUG00000008426)
Salmoninae	ANCESTRAL SPECIES	594					ENSGT01090000260185.b	ENSGT00940000156022.a.d #15	ENSGT00940000155527.j.a.e.b	ENSGT00940000154658.a.c	ENSGT00940000154273.b.g #14	ENSGT00940000159844.g #16	ENSGT00940000159372 #17	ENSGT00940000160289.k #18	ENSGT00940000161071.j #19	ENSGT00940000166370.e #20	ENSGT00730000112287.g #21	ENSGT00950000182903.a.b.i.g.b #22	ENSGT01100000263613.d #24	ENSGT00940000163927.a.a.v.a #25	ENSGT00940000153491.b.b.b.d #26	ENSGT00940000166316.f #27
Salmoninae_a	ANCESTRAL SPECIES	34	ENSGT00940000156337.c.h	ENSGT00940000153617.B.g	ENSGT00940000155804.k.a.b	ENSGT00530000063790.b.c	ENSGT00940000155586.B.g.a	ENSGT00940000155527.j.a.e.b	ENSGT00940000154658.a.c	ENSGT01090000260185.b	ENSGT00940000156022.a.d #15	ENSGT00940000159844.g #16	ENSGT00940000159372 #17	ENSGT00940000160289.k #18	ENSGT00940000161071.j #19	ENSGT00940000166370.e #20	ENSGT00730000112287.g #21	ENSGT00950000182903.a.b.i.g.b #22	ENSGT00990000208909	ENSGT01100000263613.d #24	ENSGT00940000163927.a.a.v.a #25	ENSGT00940000153491.b.b.b.d #26	ENSGT00940000166316.f #27	ENSGT01000000221243	ENSGT00940000156128.a.b #29	ENSGT00940000165054.A.d	ENSGT00390000000592.w.a	ENSGT00940000165100.b.d	ENSGT00940000165987.a.a	ENSGT00390000018418.i	ENSGT00440000037582.m	ENSGT00940000158001.g	ENSGT00510000050706.c #37
Salmo	ANCESTRAL SPECIES	18	ENSGT00940000153617.B.g	ENSGT00940000155804.k.a.b	ENSGT00530000063790.b.c	ENSGT00940000155586.B.g.a	ENSGT00940000155527.j.a.e.b	ENSGT00940000154658.a.c	ENSGT01090000260185.b	ENSGT00940000156022.a.d #15	ENSGT00940000159844.g #16	ENSGT00940000159372 #17	ENSGT00940000160289.k #18	ENSGT00940000161071.j #19	ENSGT00940000166370.e #20	ENSGT00730000112287.g #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i.g.b #22	ENSGT00990000208909	ENSGT01100000263613.d #24	ENSGT00940000163927.a.a.u #25	ENSGT00940000163927.a.a.v.a #25	ENSGT00940000153491.b.b.b.d #26	ENSGT00940000166316.f #27	ENSGT01000000221243	ENSGT00940000156128.a.b #29	ENSGT00940000165054.A.d	ENSGT00390000000592.w.a	ENSGT00940000165100.b.d	ENSGT00940000165987.a.a	ENSGT00390000018418.i	ENSGT00440000037582.n.b	ENSGT00940000158001.g
Atlantic salmon	MODERN SPECIES	9	USP53 (ENSSSAG00000074275)	PTPRD (ENSSSAG00000096916)	tyrp-1 (ENSSSAG00000075543)	LURAP1L (ENSSSAG00000122135)	ENSSSAG00000075588	ENSSSAG00000076648	ENSSSAG00000079701	ENSSSAG00000117990	ENSSSAG00000079961 #15	ENSSSAG00000079969 #16	ENSSSAG00000079975 #17	acap1 (ENSSSAG00000080011) #18	agfg2 (ENSSSAG00000080121) #19	ENSSSAG00000080127 #20	si:ch73-335l21.2 (ENSSSAG00000080136)	dvl2 (ENSSSAG00000080142) #22	ENSSSAG00000080197	ENSSSAG00000090733	ENSSSAG00000113794 #24	ponzr1 (ENSSSAG00000080201) #25	ENSSSAG00000098248	ENSSSAG00000080204 #26	ENSSSAG00000080205 #27	ENSSSAG00000080207	ENSSSAG00000080209 #29	fis1 (ENSSSAG00000080211)	cldn15a (ENSSSAG00000088850)	dnajc3b (ENSSSAG00000080221)	ENSSSAG00000040285	naa38 (ENSSSAG00000040010)	ENSSSAG00000046781 #37
River trout	MODERN SPECIES	35	PTPRD (ENSSTUG00000005964)	TYRP1 (ENSSTUG00000028684)	LURAP1L (ENSSTUG00000028702)	MPDZ (ENSSTUG00000028873)	ADGRL3 (ENSSTUG00000033369)	ENSSTUG00000040419	ENSSTUG00000040514	ENSSTUG00000040538 #15	BCL6B (ENSSTUG00000040579) #16	SLC16A13 (ENSSTUG00000040627) #17	ENSSTUG00000040660	acap1 (ENSSTUG00000040685) #18	agfg2 (ENSSTUG00000040829) #19	ENSSTUG00000040864 #20	si:ch73-335l21.4 (ENSSTUG00000040890) #21	dvl2 (ENSSTUG00000040929) #22	ENSSTUG00000041643	ENSSTUG00000041708 #24	ponzr1 (ENSSTUG00000041721) #25	ENSSTUG00000041735 #26	ENSSTUG00000041837 #29	ENSSTUG00000041879	fis1 (ENSSTUG00000041897)	cldn15a (ENSSTUG00000041935)	dnajc3b (ENSSTUG00000041966)	cyb5d1 (ENSSTUG00000042645)	naa38 (ENSSTUG00000042692)	CHD3 (ENSSTUG00000042921)	tnfsf12 (ENSSTUG00000043460) #37	ENSSTUG00000043472	ENSSTUG00000043519
Oncorhynchus	ANCESTRAL SPECIES	31	ENSGT00940000153617.B.g	ENSGT00960000188752.b.a.a.b	ENSGT00940000155804.k.a.b	ENSGT00530000063790.b.c	ENSGT00940000155586.B.g.a	ENSGT00940000155527.j.a.e.b	ENSGT00940000154658.a.c	ENSGT01090000260185.b	ENSGT00940000156022.a.d #15	ENSGT00940000159844.g #16	ENSGT00940000159372 #17	ENSGT00940000160289.k #18	ENSGT00940000161071.j #19	ENSGT00940000166370.e #20	ENSGT00730000112287.g #21	ENSGT00950000182903.a.b.i.g.b #22	ENSGT00990000208909	ENSGT01100000263613.d #24	ENSGT00940000163927.a.a.v.a #25	ENSGT00940000153491.b.b.b.d #26	ENSGT00940000166316.f #27	ENSGT01000000221243	ENSGT00940000156128.a.b #29	ENSGT00940000165054.A.d	ENSGT00390000000592.w.a	ENSGT00940000165100.b.d	ENSGT00940000165987.a.a	ENSGT00390000018418.i	ENSGT00440000037582.m	ENSGT00940000158001.g	ENSGT00510000050706.c #37
Rainbow trout	MODERN SPECIES	30	TYRP1 (ENSOMYG00000025839)	LURAP1L (ENSOMYG00000025827)	MPDZ (ENSOMYG00000022089)	ENSOMYG00000075032	ENSOMYG00000013446	ENSOMYG00000012761	ENSOMYG00000012701	ENSOMYG00000074378 #14	ENSOMYG00000052636 #14	ENSOMYG00000012672 #16	ENSOMYG00000012661 #17	acap1 (ENSOMYG00000010288) #18	agfg2 (ENSOMYG00000009492) #19	ENSOMYG00000009460 #20	si:ch73-335l21.4 (ENSOMYG00000009419) #21	dvl2 (ENSOMYG00000009408) #22	ENSOMYG00000009372	ENSOMYG00000009340 #24	ponzr1 (ENSOMYG00000009316) #25	ENSOMYG00000056354 #26	ENSOMYG00000009263 #27	ENSOMYG00000009246	ENSOMYG00000009224 #29	ENSOMYG00000052402	fis1 (ENSOMYG00000009200)	cldn15a (ENSOMYG00000009184)	dnajc3b (ENSOMYG00000008992)	NAA38 (ENSOMYG00000008869)	cyb5d1 (ENSOMYG00000008841)	CHD3 (ENSOMYG00000005962)	tnfsf12 (ENSOMYG00000003529) #37
Oncorhynchus_a	ANCESTRAL SPECIES	30	ENSGT00940000153617.B.g	ENSGT00960000188752.b.a.a.b	ENSGT00940000155804.k.a.b	ENSGT00530000063790.b.c	ENSGT00940000155586.B.g.a	ENSGT00940000155527.j.a.e.b	ENSGT00940000154658.a.c	ENSGT01090000260185.b	ENSGT00940000156022.a.d #15	ENSGT00940000159844.g #16	ENSGT00940000159372 #17	ENSGT00940000160289.k #18	ENSGT00940000161071.j #19	ENSGT00940000166370.e #20	ENSGT00730000112287.g #21	ENSGT00950000182903.a.b.i.g.b #22	ENSGT00990000208909	ENSGT01100000263613.d #24	ENSGT00940000163927.a.a.v.a #25	ENSGT00940000153491.b.b.b.d #26	ENSGT00940000166316.f #27	ENSGT00940000156128.a.b #29	ENSGT00940000165054.A.d	ENSGT00390000000592.w.a	ENSGT00940000165100.b.d	ENSGT00940000165987.a.a	ENSGT00390000018418.i	ENSGT00440000037582.m	ENSGT00940000158001.g	ENSGT00510000050706.c #37	ENSGT00800000125278
Coho salmon	MODERN SPECIES	7	TYRP1 (ENSOKIG00005016952)	LURAP1L (ENSOKIG00005016940)	MPDZ (ENSOKIG00005010909)	ADGRL3 (ENSOKIG00005006122)	ENSOKIG00005005786	ENSOKIG00005005518	ENSOKIG00005005458	ENSOKIG00005005451 #15	ENSOKIG00005005445 #16	ENSOKIG00005005442	SLC16A13 (ENSOKIG00005005433) #17	acap1 (ENSOKIG00005005394) #18	agfg2 (ENSOKIG00005005355) #19	ENSOKIG00005005344 #20	si:ch73-335l21.4 (ENSOKIG00005005335) #21	dvl2 (ENSOKIG00005005303) #22	ENSOKIG00005005280	ENSOKIG00005005274 #24	ponzr1 (ENSOKIG00005005264) #25	ENSOKIG00005005250 #26	ENSOKIG00005005243 #27	ENSOKIG00005005236 #29	ENSOKIG00005005230	fis1 (ENSOKIG00005005223)	cldn15a (ENSOKIG00005005215)	dnajc3b (ENSOKIG00005004918)	NAA38 (ENSOKIG00005004866)	cyb5d1 (ENSOKIG00005004853)	CHD3 (ENSOKIG00005004700)	tnfsf12 (ENSOKIG00005004677) #37	ENSOKIG00005004669
Chinook salmon	MODERN SPECIES	1	PTPRD (ENSOTSG00005024026)	ENSOTSG00005023889	TYRP1 (ENSOTSG00005023884)	MPDZ (ENSOTSG00005015616)	cdk6 (ENSOTSG00005015574)	ADGRL3 (ENSOTSG00005008372)	ENSOTSG00005008304	ENSOTSG00005008295	ENSOTSG00005008294 #15	ENSOTSG00005008291 #16	SLC16A13 (ENSOTSG00005008287) #17	acap1 (ENSOTSG00005002953) #18	agfg2 (ENSOTSG00005002772) #19	si:ch73-335l21.4 (ENSOTSG00005002763) #21	ENSOTSG00005002753 #20	dvl2 (ENSOTSG00005002746) #22	ENSOTSG00005002743 #24	ponzr1 (ENSOTSG00005002742) #25	ENSOTSG00005002729 #26	ENSOTSG00005002719 #27	ENSOTSG00005002704 #29	ENSOTSG00005002696	fis1 (ENSOTSG00005002690)	cldn15a (ENSOTSG00005002685)	dnajc3b (ENSOTSG00005002398)	naa38 (ENSOTSG00005002389)	cyb5d1 (ENSOTSG00005002377)	tnfsf12 (ENSOTSG00005002342) #37	ENSOTSG00005002337	ENSOTSG00005002326	NEURL4 (ENSOTSG00005001903)
Huchen	MODERN SPECIES	412						ENSHHUG00000014088	ENSHHUG00000015197	ENSHHUG00000016131	ENSHHUG00000016161 #15	BCL6B (ENSHHUG00000016168) #16	SLC16A13 (ENSHHUG00000016192) #17	acap1 (ENSHHUG00000016201) #18	agfg2 (ENSHHUG00000016247) #19	ENSHHUG00000016288 #20	si:ch73-335l21.4 (ENSHHUG00000016299) #21	dvl2 (ENSHHUG00000016309) #22	ENSHHUG00000016421 #24	ponzr1 (ENSHHUG00000016423) #25	ENSHHUG00000016432 #26
Salmoninae	ANCESTRAL SPECIES	1303														ENSGT00940000165960.a.a ##30	ENSGT00640000091486.b.`b.b	ENSGT00950000182903.a.b.i.h #22
Salmoninae_a	ANCESTRAL SPECIES	129														ENSGT00940000165960.a.a ##30	ENSGT00640000091486.b.`b.b	ENSGT00950000182903.a.b.i.h #22	ENSGT00940000158535 #23	ENSGT00940000154838.A.f.b.b	ENSGT00940000164016.e	ENSGT00940000161062.c.b	ENSGT00940000160785	ENSGT00940000161538	ENSGT00940000160946	ENSGT00940000163093.a.b	ENSGT00510000047299.c	ENSGT00940000155158.q.b	ENSGT00390000000214.a.a.f	ENSGT00940000156881.h	ENSGT00940000156631.B	ENSGT00950000183018.a.d.b	ENSGT00530000064130
Salmo	ANCESTRAL SPECIES	153														ENSGT00940000165960.a.a ##30	ENSGT00640000091486.b.`b.b	ENSGT00950000182903.a.b.i.h #22	ENSGT00940000158535.x #23	ENSGT00940000154838.A.f.b.b	ENSGT00940000164016.e	ENSGT00940000161062.c.b	ENSGT00940000160785	ENSGT00940000161538	ENSGT00940000160946	ENSGT00940000163093.a.b	ENSGT00510000047299.c	ENSGT00940000155158.r	ENSGT00390000000214.a.a.f	ENSGT00940000156881.h	ENSGT00940000156631.B.g	ENSGT00950000183018.a.d.b	ENSGT00530000064130
River trout	MODERN SPECIES	10					ENSSTUG00000010128	mrps17 (ENSSTUG00000010076)	ENSSTUG00000010044	ENSSTUG00000010041	septin4a (ENSSTUG00000009953)	mntb (ENSSTUG00000009947)	ENSSTUG00000009943	pafah1b1b (ENSSTUG00000009861)	ZPLD1 (ENSSTUG00000009819)	ENSSTUG00000009810 ##30	taf6 (ENSSTUG00000009794)	DVL2 (ENSSTUG00000009670) #22	acadvl (ENSSTUG00000008764) #23	ENSSTUG00000008704	klf5l (ENSSTUG00000008696)	klf8 (ENSSTUG00000008680)	cldn2 (ENSSTUG00000008677)	ripply1 (ENSSTUG00000008669)	PRRG3 (ENSSTUG00000008657)	ENSSTUG00000008644	pgap2 (ENSSTUG00000008636)	ENSSTUG00000008628	stim1b (ENSSTUG00000007559)	alcama (ENSSTUG00000007257)	ENSSTUG00000007085	ENSSTUG00000007054	ENSSTUG00000007049
Atlantic salmon	MODERN SPECIES	23	LGI2 (ENSSSAG00000043307)	ENSSSAG00000111674	ENSSSAG00000043456	ENSSSAG00000045334	ENSSSAG00000113463	ENSSSAG00000063298	ENSSSAG00000045683	ENSSSAG00000045653	ENSSSAG00000010182	ENSSSAG00000096375	ENSSSAG00000005502	ENSSSAG00000045602	ENSSSAG00000084245 ##30	ENSSSAG00000045755	ENSSSAG00000049715	ENSSSAG00000047918 #22	ENSSSAG00000049619 #23	klf5l (ENSSSAG00000049796)	klf8 (ENSSSAG00000088225)	ENSSSAG00000107634	cldn2 (ENSSSAG00000086905)	ripply1 (ENSSSAG00000049824)	ENSSSAG00000102949	ENSSSAG00000049840	pgap2 (ENSSSAG00000049858)	ENSSSAG00000049978	ENSSSAG00000054868	ENSSSAG00000054962	ENSSSAG00000089981	ENSSSAG00000085065	ENSSSAG00000111565
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000160071.h	ENSGT00940000153394.c.b.b.c.a.a.a	ENSGT00940000162605	ENSGT00940000165017.b	ENSGT00940000154932.A.v	ENSGT00940000157478.b.c.a	ENSGT00940000157170.j	ENSGT00940000165144.a.b	ENSGT00390000010377.i	ENSGT00940000158861.B.d	ENSGT00390000007925	ENSGT00940000159852.a.d	ENSGT00950000182931.B.a.a.h	ENSGT00940000165960.a.a ##30	ENSGT00640000091486.b.`b.b	ENSGT00950000182903.a.b.i.h #22	ENSGT00940000158535.z #23	ENSGT00940000154838.A.f.b.b	ENSGT00940000164016.e	ENSGT00940000161062.c.b	ENSGT00940000160785	ENSGT00940000161538	ENSGT00940000160946	ENSGT00940000163093.a.b	ENSGT00510000047299.c	ENSGT00940000155158.q.b	ENSGT00390000000214.a.a.f	ENSGT00940000156881.h	ENSGT00940000156631.B	ENSGT00990000204242	ENSGT01030000235320
Oncorhynchus_a	ANCESTRAL SPECIES	31	ENSGT00940000160071.h	ENSGT00940000153394.c.b.b.c.a.a.a	ENSGT00940000162605	ENSGT00940000165017.b	ENSGT00940000154932.A.v	ENSGT00940000157478.b.c.a	ENSGT00940000157170.j	ENSGT00940000165144.a.b	ENSGT00390000010377.i	ENSGT00940000158861.B.d	ENSGT00390000007925	ENSGT00940000159852.a.d	ENSGT00950000182931.B.a.a.h	ENSGT00940000165960.a.a ##30	ENSGT00640000091486.b.`b.b	ENSGT00950000182903.a.b.i.h #22	ENSGT00940000158535.z #23	ENSGT00940000154838.A.f.b.b	ENSGT00940000164016.e	ENSGT00940000161062.c.b	ENSGT00940000160785	ENSGT00940000161538	ENSGT00940000160946	ENSGT00940000163093.a.b	ENSGT00510000047299.c	ENSGT00940000155158.q.b	ENSGT00390000000214.a.a.f	ENSGT00940000156881.h	ENSGT00940000156631.B	ENSGT00990000204242	ENSGT01030000235320
Coho salmon	MODERN SPECIES	10	USP15 (ENSOKIG00005020661)	ENSOKIG00005022108	KDM5A (ENSOKIG00005023104)	ENSOKIG00005032206	atxn10 (ENSOKIG00005032218)	ENSOKIG00005032291	ENSOKIG00005032345	cdpf1 (ENSOKIG00005032837)	cdkn1ba (ENSOKIG00005032876)	ENSOKIG00005032887	ENSOKIG00005032906	ENSOKIG00005033012	ENSOKIG00005033029 ##30	ENSOKIG00005033041	TAF6 (ENSOKIG00005033072)	DVL2 (ENSOKIG00005033322) #22	acadvl (ENSOKIG00005034237) #23	ENSOKIG00005035616	ENSOKIG00005035657	klf5l (ENSOKIG00005035664)	klf8 (ENSOKIG00005035674)	cldn2 (ENSOKIG00005035682)	ripply1 (ENSOKIG00005035690)	PRRG3 (ENSOKIG00005035710)	ENSOKIG00005035720	pgap2 (ENSOKIG00005035752)	RHOG (ENSOKIG00005035771)	stim1b (ENSOKIG00005035839)	alcama (ENSOKIG00005036381)	CBLB (ENSOKIG00005036643)	ENSOKIG00005036954
Chinook salmon	MODERN SPECIES	8	ENSOTSG00005042274	ENSOTSG00005042271	USP15 (ENSOTSG00005037629)	ENSOTSG00005028815	KDM5A (ENSOTSG00005006577)	ENSOTSG00005006493	atxn10 (ENSOTSG00005006492)	ENSOTSG00005006490	cdpf1 (ENSOTSG00005006488)	cdkn1ba (ENSOTSG00005006487)	ENSOTSG00005006486	ENSOTSG00005006480	ENSOTSG00005006479	ENSOTSG00005006478 ##30	taf6 (ENSOTSG00005006469)	DVL2 (ENSOTSG00005006252) #22	acadvl (ENSOTSG00005006224) #23	ENSOTSG00005006221	klf5l (ENSOTSG00005006220)	klf8 (ENSOTSG00005006218)	cldn2 (ENSOTSG00005006217)	ripply1 (ENSOTSG00005006216)	PRRG3 (ENSOTSG00005006215)	ENSOTSG00005006213	ENSOTSG00005006211	pgap2 (ENSOTSG00005006210)	rhogb (ENSOTSG00005006208)	stim1b (ENSOTSG00005002701)	alcama (ENSOTSG00005002523)	CBLB (ENSOTSG00005002425)	ENSOTSG00005002171
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000027072	ENSOMYG00000027062	ENSOMYG00000024412	ENSOMYG00000022721	ENSOMYG00000017351	ENSOMYG00000039259	ENSOMYG00000017178	atxn10 (ENSOMYG00000017104)	ENSOMYG00000017059	cdpf1 (ENSOMYG00000017030)	cdkn1ba (ENSOMYG00000017016)	ENSOMYG00000016973	ENSOMYG00000016941	ENSOMYG00000016929 ##30	ENSOMYG00000016803	ENSOMYG00000015917 #22	ENSOMYG00000013682 #23	ENSOMYG00000063575	ENSOMYG00000013455	ENSOMYG00000076000	klf5l (ENSOMYG00000013448)	klf8 (ENSOMYG00000013437)	cldn2 (ENSOMYG00000013409)	ripply1 (ENSOMYG00000013400)	ENSOMYG00000013391	ENSOMYG00000013381	pgap2 (ENSOMYG00000013371)	ENSOMYG00000013354	stim1b (ENSOMYG00000011142)	ENSOMYG00000010749	ENSOMYG00000071898
Huchen	MODERN SPECIES	1278											ENSHHUG00000041000	MYT1L (ENSHHUG00000040944)	ENSHHUG00000040938 ##30	ENSHHUG00000040934	ENSHHUG00000040928	DVL2 (ENSHHUG00000040924) #22
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	93	ENSGT00390000003738.a.a.d	ENSGT00950000183153.c.a.q	ENSGT00940000163587.a.b.b	ENSGT00940000159305.j	ENSGT00940000154035.a.f.b	ENSGT00940000160771	ENSGT00390000013834	ENSGT00940000165258	ENSGT00940000163503.A.a.a.b	ENSGT00390000000592.ib	ENSGT00940000165100.b.a	ENSGT00950000183121.a.c.a ##36	ENSGT00940000165960.a.a ##30	ENSGT00640000091486.b.bb	ENSGT01030000234567.B.a.b.a.b.a	ENSGT00950000182903.a.b.i.a #22	ENSGT00940000158535.u #23	ENSGT00940000154838.A.f.b.b	ENSGT00940000166953	ENSGT00940000178676	ENSGT00940000164853.a.a.e	ENSGT00990000204023	ENSGT00940000167331.c	ENSGT00940000163913	ENSGT00940000159400	ENSGT01100000263556.a.a.q.d.cb	ENSGT00950000182899.C.b	ENSGT01000000214413.b.b.j	ENSGT00950000183196.A.w	ENSGT00940000160229	ENSGT00940000160933
Asian bonytongue	MODERN SPECIES	13	wnt3 (ENSSFOG00015000492)	ormdl3 (ENSSFOG00015000476)	ENSSFOG00015000434	slc25a35 (ENSSFOG00015000398)	rangrf (ENSSFOG00015000389)	grk1b (ENSSFOG00015000349)	ENSSFOG00015032597	ENSSFOG00015000241	fis1 (ENSSFOG00015000211)	cldn15a (ENSSFOG00015000205)	sat2b (ENSSFOG00015027230) ##36	ENSSFOG00015000166	ENSSFOG00015021526 ##30	taf6 (ENSSFOG00015021494)	ENSSFOG00015021464	dvl2 (ENSSFOG00015021435) #22	acadvl (ENSSFOG00015021347) #23	ENSSFOG00015021312	ENSSFOG00015032329	ENSSFOG00015025016 #16	si:ch211-284e13.5 (ENSSFOG00015032825)	pgr (ENSSFOG00015021246)	gucy2d (ENSSFOG00015021100)	eif4e2rs1 (ENSSFOG00015021065)	ENSSFOG00015021029	slc12a9 (ENSSFOG00015021010)	ENSSFOG00015021005	ENSSFOG00015016802	gnb2 (ENSSFOG00015016821)	ENSSFOG00015017047	mink1 (ENSSFOG00015016892)
P. kingsleyae	MODERN SPECIES	208	ENSPKIG00000001714	tp53 (ENSPKIG00000001744)	ENSPKIG00000001780	CAPG (ENSPKIG00000001804)	ENSPKIG00000001826	slc25a35 (ENSPKIG00000001860)	rangrf (ENSPKIG00000001893)	grk1b (ENSPKIG00000001928)	ENSPKIG00000001959	fis1 (ENSPKIG00000001987)	ENSPKIG00000002003	sat2b (ENSPKIG00000002021) ##36	ENSPKIG00000002044	ENSPKIG00000002057 ##30	ENSPKIG00000002086	dvl2 (ENSPKIG00000002139) #22
Osteoglossiformes	ANCESTRAL SPECIES	52			ENSGT00940000169954	ENSGT00600000085600	ENSGT00390000013368	ENSGT00510000047760	ENSGT01100000263491.a.b.b.c.a.b	ENSGT01090000260185	ENSGT00940000156022.a #15	ENSGT00940000159372 #17	ENSGT00940000160289 #18	ENSGT00940000161071 #19	ENSGT00940000166370.i #20	ENSGT00730000112287 #21	ENSGT00940000174877	ENSGT00950000182903.a.b.i.b #22	ENSGT00940000158535.v #23	ENSGT01100000263613 #24	ENSGT00940000163927.a.a #25	ENSGT00940000153491.b.b.b #26	ENSGT00940000166316 #27	ENSGT00390000014072.B #28	ENSGT00640000091486.b.cb	ENSGT00940000156128.a #29	ENSGT00940000165960.a.b.b #30	ENSGT00940000167107 #31	ENSGT00390000000592.hb	ENSGT00940000165100.b.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00440000037582
P. kingsleyae	MODERN SPECIES	275	sult6b1 (ENSPKIG00000007467)	ENSPKIG00000007454	ENSPKIG00000007433	ENSPKIG00000007419	slx1b (ENSPKIG00000007396)	zgc:112271 (ENSPKIG00000007368)	ENSPKIG00000007354	ENSPKIG00000007342	ENSPKIG00000007321 #15	SLC16A13 (ENSPKIG00000007295) #17	acap1 (ENSPKIG00000007239) #18	agfg2 (ENSPKIG00000007184) #19	ENSPKIG00000007153 #20	si:ch73-335l21.4 (ENSPKIG00000007139) #21	si:ch73-335l21.2 (ENSPKIG00000007128)	dvl2 (ENSPKIG00000007065) #22	ENSPKIG00000007046 #24	ponzr1 (ENSPKIG00000007023) #25	ENSPKIG00000006978 #26	ENSPKIG00000006945 #27	cnpy4 (ENSPKIG00000006916) #28	taf6 (ENSPKIG00000006892)	ENSPKIG00000006869 #29	ENSPKIG00000006848 #30	zgc:103586 (ENSPKIG00000006828) #31	FIS1 (ENSPKIG00000006754)	cldn15a (ENSPKIG00000006689)	dnajc3b (ENSPKIG00000006633)	ENSPKIG00000006614	cyb5d1 (ENSPKIG00000006579)	CHD3 (ENSPKIG00000006305)
Spotted gar	MODERN SPECIES	658	DMWD (ENSLOCG00000014351)	ENSLOCG00000014353	hif1al (ENSLOCG00000014356)	nccrp1 (ENSLOCG00000014359)	zgc:152863 (ENSLOCG00000014363)	pak4 (ENSLOCG00000014365)	ENSLOCG00000017563	ccdc9 (ENSLOCG00000014371)	sae1 (ENSLOCG00000014375)	ZC3H4 (ENSLOCG00000014380)	zgc:154093 (ENSLOCG00000017564)	ercc2 (ENSLOCG00000014383)	dpf1 (ENSLOCG00000014388)	ENSLOCG00000014391	ENSLOCG00000014393	dvl2 (ENSLOCG00000014396) #22	acadvl (ENSLOCG00000014404) #23	ENSLOCG00000014411 #24	ponzr1 (ENSLOCG00000014412) #25	ENSLOCG00000014415	ENSLOCG00000014441 #26	ENSLOCG00000014453 #27	ENSLOCG00000014455	ENSLOCG00000014456	mpdu1b (ENSLOCG00000014460)	sox19a (ENSLOCG00000014463)	eif4a1a (ENSLOCG00000014465)	senp3a (ENSLOCG00000014470)	tnk1 (ENSLOCG00000014472)	plscr3b (ENSLOCG00000014476)	phf23b (ENSLOCG00000014481)
Reedfish	MODERN SPECIES	11	ENSECRG00000004138	ENSECRG00000004124	ENSECRG00000004072 #27	ENSECRG00000004037 #26	ENSECRG00000004021	ENSECRG00000003982	ENSECRG00000003962	ENSECRG00000003955	ENSECRG00000003950	ENSECRG00000003945	ENSECRG00000003937	ENSECRG00000003931	ENSECRG00000003928	ENSECRG00000003913	ENSECRG00000003901	dvl2 (ENSECRG00000010909) #22	acadvl (ENSECRG00000010900) #23	ENSECRG00000010894 #24	ponzr1 (ENSECRG00000010892) #25	ENSECRG00000010887 ##25	ENSECRG00000010882 ##25	cldn7b (ENSECRG00000010876)	chrnb1l (ENSECRG00000010872)	chrnb1 (ENSECRG00000010857)	fgf11a (ENSECRG00000010833)	ENSECRG00000010825	tmem102 (ENSECRG00000010823)	tmem256 (ENSECRG00000010817)	nlgn2a (ENSECRG00000010815)	ENSECRG00000010812	ENSECRG00000010810 ##25
Actinopterygii	ANCESTRAL SPECIES	118	ENSGT00950000183063.c.a	ENSGT00950000183106.a.a.b	ENSGT00940000167797	ENSGT00940000155439	ENSGT00940000164682	ENSGT00390000006294	ENSGT00940000164152	ENSGT00940000157673	ENSGT00390000005285	ENSGT00940000171017	ENSGT00530000063882.b	ENSGT00390000009210	ENSGT01040000240503.B	ENSGT00940000157496	ENSGT00940000155604	ENSGT00950000182903.a.b.j ##22
Neopterygii	ANCESTRAL SPECIES	185	ENSGT00940000153386.B	ENSGT00940000154648.a.a	ENSGT00950000183063.c.a	ENSGT00950000183106.a.a.b	ENSGT00940000167797	ENSGT00940000155439	ENSGT00940000164682	ENSGT00390000006294	ENSGT01020000230768	ENSGT00940000164152	ENSGT00940000157673	ENSGT00390000005285	ENSGT00940000171017	ENSGT00530000063882.b	ENSGT00940000155604	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165683	ENSGT00940000159223	ENSGT00950000182903.a.a ##22	ENSGT00940000160400	ENSGT00940000155470.b	ENSGT00390000016972
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182903.a.b.j ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182903.a.b.j ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182903.a.b.j ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00950000182903.a.b.j ##22
Euacanthomorphacea	ANCESTRAL SPECIES	33					ENSGT00390000012719.a.b	ENSGT00940000155414	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000157650	ENSGT00390000013063.u
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	4	zgc:92744 (ENSMMDG00005004942)	mmp23bb (ENSMMDG00005004932)	ENSMMDG00005004925	ENSMMDG00005004919	ENSMMDG00005021083	ENSMMDG00005021079	polr2d (ENSMMDG00005021074)	ENSMMDG00005021068	ENSMMDG00005021066	ABCF3 (ENSMMDG00005020762)	ENSMMDG00005020678	rpl35a (ENSMMDG00005020659)	abcc5 (ENSMMDG00005020651)	rnpepl1 (ENSMMDG00005019886)	ENSMMDG00005019860 ##22	ENSMMDG00005019845 ##22	MASP1 (ENSMMDG00005019790)	ENSMMDG00005019775	DGKD (ENSMMDG00005017004)	ENSMMDG00005016947	sagb (ENSMMDG00005016819)	atg16l1 (ENSMMDG00005014904)	ENSMMDG00005014821	ENSMMDG00005014812	ENSMMDG00005014810	ENSMMDG00005014809	ENSMMDG00005014806	fgf12b (ENSMMDG00005014801)	GALNT17 (ENSMMDG00005014797)	ENSMMDG00005014795	ENSMMDG00005014793
Pinecone sodierfish	MODERN SPECIES	4	eif2a (ENSMMDG00005004959)	zgc:92744 (ENSMMDG00005004942)	mmp23bb (ENSMMDG00005004932)	ENSMMDG00005004925	ENSMMDG00005004919	ENSMMDG00005021083	ENSMMDG00005021079	polr2d (ENSMMDG00005021074)	ENSMMDG00005021068	ENSMMDG00005021066	ABCF3 (ENSMMDG00005020762)	ENSMMDG00005020678	rpl35a (ENSMMDG00005020659)	abcc5 (ENSMMDG00005020651)	rnpepl1 (ENSMMDG00005019886)	ENSMMDG00005019860 ##22	ENSMMDG00005019845 ##22	MASP1 (ENSMMDG00005019790)	ENSMMDG00005019775	DGKD (ENSMMDG00005017004)	ENSMMDG00005016947	sagb (ENSMMDG00005016819)	atg16l1 (ENSMMDG00005014904)	ENSMMDG00005014821	ENSMMDG00005014812	ENSMMDG00005014810	ENSMMDG00005014809	ENSMMDG00005014806	fgf12b (ENSMMDG00005014801)	GALNT17 (ENSMMDG00005014797)	ENSMMDG00005014795
Percomorphaceae	ANCESTRAL SPECIES	64							ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b
Percomorphaceae_B	ANCESTRAL SPECIES	25	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167612	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00950000183048.b.b.a.d.b.b	ENSGT00940000167717	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b
Percomorphaceae_C	ANCESTRAL SPECIES	9	ENSGT00950000183048.b.b.a.d.a.a.a.a	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167612	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00940000166255	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b
Percomorphaceae_D	ANCESTRAL SPECIES	9	ENSGT00950000183048.b.b.a.d.a.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167612	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00940000166255	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b
Anabantaria	ANCESTRAL SPECIES	9	ENSGT00440000038181	ENSGT00940000153680.b	ENSGT00390000006450	ENSGT00940000158353	ENSGT00950000183048.b.b.a.d.b.b	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00950000182887.C.b.a.m.b
Anabantoidei	ANCESTRAL SPECIES	29	ENSGT00940000160131	ENSGT00440000038181	ENSGT00940000153680.b	ENSGT00390000006450	ENSGT00940000158353	ENSGT00950000183048.b.b.a.d.b.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.a.c	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000159041	ENSGT00950000182985.a.b.b	ENSGT00940000160348	ENSGT00940000153936.a
Climbing perch	MODERN SPECIES	4	PGM2L1 (ENSATEG00000020523)	ENSATEG00000020482	ENSATEG00000020463	ENSATEG00000028562	ENSATEG00000026772	ENSATEG00000020437	ENSATEG00000026749	ENSATEG00000020416	ENSATEG00000020412	ENSATEG00000020405	ENSATEG00000020295	ENSATEG00000020202	rpl35a (ENSATEG00000020166)	abcc5 (ENSATEG00000020009)	rnpepl1 (ENSATEG00000019976)	ENSATEG00000019864 ##22	mmp23bb (ENSATEG00000019844)	ENSATEG00000019841	EIF2A (ENSATEG00000019832)	ENSATEG00000019800	ENSATEG00000019772	ENSATEG00000028092	ENSATEG00000028384	ENSATEG00000026601	ENSATEG00000019708	ENSATEG00000019694	ENSATEG00000019595	ENSATEG00000025585	ENSATEG00000019563	ENSATEG00000019500	ENSATEG00000019487
Siamese fighting fish	MODERN SPECIES	4	DMWD (ENSBSLG00000002536)	ENSBSLG00000002559	ENSBSLG00000002674	NYAP2 (ENSBSLG00000002694)	ENSBSLG00000002711	ENSBSLG00000002728	ENSBSLG00000002738	polr2d (ENSBSLG00000002753)	ENSBSLG00000002781	ENSBSLG00000002798	ABCF3 (ENSBSLG00000002811)	ENSBSLG00000002887	rpl35a (ENSBSLG00000002959)	abcc5 (ENSBSLG00000002971)	rnpepl1 (ENSBSLG00000003039)	ENSBSLG00000003050 ##22	ENSBSLG00000003574	MASP1 (ENSBSLG00000003765)	ENSBSLG00000003912	sagb (ENSBSLG00000004093)	ENSBSLG00000004525	ppp1r14ab (ENSBSLG00000004528)	ENSBSLG00000004539	ENSBSLG00000004540	atg16l1 (ENSBSLG00000004817)	ENSBSLG00000005236	ENSBSLG00000005248	ENSBSLG00000005274	ENSBSLG00000005316	ENSBSLG00000005328	ENSBSLG00000005361
Zig-zag eel	MODERN SPECIES	4	ENSMAMG00000024805	ENSMAMG00000026416	ENSMAMG00000018843	ENSMAMG00000018830	ENSMAMG00000018823	ENSMAMG00000018809	ENSMAMG00000018798	ENSMAMG00000018789	ENSMAMG00000027299	ENSMAMG00000018751	ENSMAMG00000018699	ENSMAMG00000018675	rpl35a (ENSMAMG00000018665)	abcc5 (ENSMAMG00000018636)	rnpepl1 (ENSMAMG00000018623)	ENSMAMG00000018559 ##22	ap2m1b (ENSMAMG00000018537)	mmp23bb (ENSMAMG00000018519)	ENSMAMG00000018507	EIF2A (ENSMAMG00000018484)	ENSMAMG00000027173	ENSMAMG00000018459	ENSMAMG00000018391	ENSMAMG00000018381	ENSMAMG00000018356	ENSMAMG00000018290	ENSMAMG00000018275	ENSMAMG00000025327	ENSMAMG00000018262	ENSMAMG00000018253	ENSMAMG00000018182
Carangaria	ANCESTRAL SPECIES	8	ENSGT00940000158353	ENSGT00950000183023.B	ENSGT00950000183048.b.b.a.d.a.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167612	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00940000166255	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b
Pleuronectoidei	ANCESTRAL SPECIES	43	ENSGT00940000153680.b	ENSGT00390000006450	ENSGT00940000158353	ENSGT00950000183023.B	ENSGT00950000183048.b.b.a.d.a.a.a.b.g.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167612	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT01040000241543	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000160400	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000176181	ENSGT01030000234590.A.a.a	ENSGT00940000153680.a
Turbot	MODERN SPECIES	15	spcs2 (ENSSMAG00000005637)	rnf169 (ENSSMAG00000005619)	lipt2 (ENSSMAG00000005600)	PGM2L1 (ENSSMAG00000005573)	ENSSMAG00000005570	ENSSMAG00000005552	ENSSMAG00000005558	ENSSMAG00000005542	ENSSMAG00000005522	ENSSMAG00000005487	ENSSMAG00000005475	ENSSMAG00000005408	ENSSMAG00000005384	rpl35a (ENSSMAG00000005341)	ENSSMAG00000005325	ENSSMAG00000005299 ##22	mmp23bb (ENSSMAG00000005283)	ENSSMAG00000030174	ENSSMAG00000005233	ENSSMAG00000005214	ENSSMAG00000005191	ENSSMAG00000034340	ENSSMAG00000005153	ENSSMAG00000005095	DGKD (ENSSMAG00000005021)	ENSSMAG00000024387	ENSSMAG00000026583	atg16l1 (ENSSMAG00000034930)	ENSSMAG00000031323	ENSSMAG00000023447	ENSSMAG00000036664
Tongue sole	MODERN SPECIES	18	ENSCSEG00000006095	ENSCSEG00000006100	ENSCSEG00000006105	ENSCSEG00000006112	ENSCSEG00000006116	ENSCSEG00000006138	ENSCSEG00000006140	ENSCSEG00000006142	ENSCSEG00000006144	polr2d (ENSCSEG00000006147)	ENSCSEG00000006151	ABCF3 (ENSCSEG00000006154)	LRCH3 (ENSCSEG00000006184)	rpl35a (ENSCSEG00000006207)	rnpepl1 (ENSCSEG00000006216)	ENSCSEG00000006219 ##22	mmp23bb (ENSCSEG00000006231)	SERP1 (ENSCSEG00000006236)	eif2a (ENSCSEG00000006247)	tsen34 (ENSCSEG00000006278)	clrn1 (ENSCSEG00000006287)	ENSCSEG00000006289	si:dkey-5i3.5 (ENSCSEG00000006293)	ENSCSEG00000006297	impdh1b (ENSCSEG00000006303)	ENSCSEG00000006326	fam3c (ENSCSEG00000006349)	btg1 (ENSCSEG00000006365)	ENSCSEG00000006371	dcn (ENSCSEG00000006390)	lum (ENSCSEG00000006414)
Carangaria_A	ANCESTRAL SPECIES	10	ENSGT00950000183048.b.b.a.d.b.a	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167612	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00940000166255	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b	ENSGT01030000234590.A.a.a
Barramundi perch	MODERN SPECIES	452	ENSLCAG00010022198	ENSLCAG00010022200	ENSLCAG00010022202	ENSLCAG00010022205	ENSLCAG00010022208	ENSLCAG00010022213	polr2d (ENSLCAG00010022217)	ENSLCAG00010022225	ENSLCAG00010022230	ABCF3 (ENSLCAG00010022252)	ENSLCAG00010022280	ENSLCAG00010022283	rpl35a (ENSLCAG00010022289)	abcc5 (ENSLCAG00010022300)	rnpepl1 (ENSLCAG00010022323)	ENSLCAG00010022348 ##22	ap2m1b (ENSLCAG00010001710)	mmp23bb (ENSLCAG00010001717)	serp1 (ENSLCAG00010001723)	eif2a (ENSLCAG00010001748)	tsen34 (ENSLCAG00010001822)	clrn1 (ENSLCAG00010001825)	MASP1 (ENSLCAG00010001828)	ENSLCAG00010001837	DGKD (ENSLCAG00010001852)	ENSLCAG00010001881	sagb (ENSLCAG00010001913)	atg16l1 (ENSLCAG00010002116)	ENSLCAG00010002651	ppp1r14ab (ENSLCAG00010002653)	ENSLCAG00010002656
Seriola	ANCESTRAL SPECIES	67	ENSGT00390000006450	ENSGT00940000158353	ENSGT00950000183023.B	ENSGT00950000183048.b.b.a.c.b.x	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167612	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000180004	ENSGT00940000165747	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b
Greater amberjack	MODERN SPECIES	14	lipt2 (ENSSDUG00000006137)	pgm2l1 (ENSSDUG00000006104)	ENSSDUG00000006096	ENSSDUG00000006083	ENSSDUG00000006077	polr2d (ENSSDUG00000006060)	ENSSDUG00000005948	ENSSDUG00000005916	ABCF3 (ENSSDUG00000005827)	LRCH3 (ENSSDUG00000005730)	rpl35a (ENSSDUG00000005691)	ENSSDUG00000005669	abcc5 (ENSSDUG00000005591)	rnpepl1 (ENSSDUG00000005553)	ENSSDUG00000005544	ENSSDUG00000005526 ##22	ENSSDUG00000005500	mmp23bb (ENSSDUG00000005468)	SERP1 (ENSSDUG00000005451)	eif2a (ENSSDUG00000005404)	tsen34 (ENSSDUG00000005391)	clrn1 (ENSSDUG00000005375)	MASP1 (ENSSDUG00000005354)	ENSSDUG00000005334	DGKD (ENSSDUG00000005284)	ENSSDUG00000005272	sagb (ENSSDUG00000005239)	atg16l1 (ENSSDUG00000005038)	spint2 (ENSSDUG00000004998)	ENSSDUG00000004987	ENSSDUG00000004951
Yellowtail amberjack	MODERN SPECIES	3260																ENSSLDG00000006389 ##22	ENSSLDG00000006352	mmp23bb (ENSSLDG00000006324)	SERP1 (ENSSLDG00000006306)	eif2a (ENSSLDG00000006171)	tsen34 (ENSSLDG00000006144)	clrn1 (ENSSLDG00000006130)	MASP1 (ENSSLDG00000006115)	ENSSLDG00000006087	DGKD (ENSSLDG00000005990)	ENSSLDG00000005969	sagb (ENSSLDG00000005931)	atg16l1 (ENSSLDG00000005790)	spint2 (ENSSLDG00000005758)	ppp1r14ab (ENSSLDG00000005727)	ENSSLDG00000005713
Eupercaria	ANCESTRAL SPECIES	7	ENSGT00950000183048.b.b.a.d.a.a.a.a	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167612	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00950000183048.b.b.a.d.b.b	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b
Tetraodontidae	ANCESTRAL SPECIES	187														ENSGT00390000004912	ENSGT00940000155604	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00390000003912	ENSGT00850000132319.a.a.a
Tetraodon	MODERN SPECIES	26	ENSTNIG00000011219	ENSTNIG00000011217	ENSTNIG00000011218	abcg1 (ENSTNIG00000011216)	spcs2 (ENSTNIG00000001167)	ENSTNIG00000011215	lipt2 (ENSTNIG00000011214)	pgm2l1 (ENSTNIG00000011213)	ENSTNIG00000001942	polr2d (ENSTNIG00000011210)	ENSTNIG00000000201	ABCF3 (ENSTNIG00000011209)	LRCH3 (ENSTNIG00000011208)	rpl35a (ENSTNIG00000011207)	rnpepl1 (ENSTNIG00000011206)	ENSTNIG00000011205 ##22	mmp23bb (ENSTNIG00000011204)	zgc:92744 (ENSTNIG00000011203)	eif2a (ENSTNIG00000011202)	tsen34 (ENSTNIG00000011201)	clrn1 (ENSTNIG00000011200)	MASP1 (ENSTNIG00000011199)	ENSTNIG00000011198	ENSTNIG00000011197	ENSTNIG00000011196	DGKD (ENSTNIG00000011194)	ENSTNIG00000002027	DGKD (ENSTNIG00000011195)	ENSTNIG00000011193	sagb (ENSTNIG00000011192)	atg16l1 (ENSTNIG00000011191)
Fugu	MODERN SPECIES	2	tagln (ENSTRUG00000027090)	pcsk7 (ENSTRUG00000008000)	bace1 (ENSTRUG00000007818)	ENSTRUG00000032408	apoa-i (ENSTRUG00000030856)	ENSTRUG00000024654	ENSTRUG00000025922	ENSTRUG00000031210	ech1 (ENSTRUG00000006958)	usp2a (ENSTRUG00000026132)	tbcela (ENSTRUG00000006818)	usf1l (ENSTRUG00000021581)	ubash3bb (ENSTRUG00000004824)	polr2d (ENSTRUG00000004740)	ABCF3 (ENSTRUG00000004104)	ENSTRUG00000026449 ##22	mmp23bb (ENSTRUG00000003905)	zgc:92744 (ENSTRUG00000018022)	tsen34 (ENSTRUG00000032895)	clrn1 (ENSTRUG00000004876)	ENSTRUG00000002657	rpl35a (ENSTRUG00000003546)	rnpepl1 (ENSTRUG00000024939)	ENSTRUG00000001802	ENSTRUG00000028564	ENSTRUG00000003150	ENSTRUG00000029754	ENSTRUG00000003272	ENSTRUG00000026223	abcg1 (ENSTRUG00000031068)	spcs2 (ENSTRUG00000033006)
Eupecaria_A	ANCESTRAL SPECIES	9	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167717	ENSGT00950000183048.b.b.a.d.b.b	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00940000167612	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b
Eupecaria_B	ANCESTRAL SPECIES	9	ENSGT00950000183048.b.b.a.d.a.a.a.a	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167612	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00950000183048.b.b.a.d.b.b	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b
Eupecaria_C	ANCESTRAL SPECIES	42	ENSGT00940000153680.b	ENSGT00390000006450	ENSGT00940000158353	ENSGT00950000183023.B	ENSGT00950000183048.b.b.a.d.b.b	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00940000167612	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	49	ENSGT00940000153680.b	ENSGT00390000006450	ENSGT00940000158353	ENSGT00950000183023.B	ENSGT00950000183048.b.b.a.d.b.b	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00940000167612	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000176181	ENSGT00950000182985.a.b.b
European seabass	MODERN SPECIES	3	ENSDLAG00005007416	ENSDLAG00005031776	ENSDLAG00005033663	ENSDLAG00005029361	ENSDLAG00005030288	ENSDLAG00005004035	ENSDLAG00005033204	ENSDLAG00005013721	ENSDLAG00005031788	ENSDLAG00005034405	ENSDLAG00005013879	ENSDLAG00005027064	rpl35a (ENSDLAG00005012978)	abcc5 (ENSDLAG00005004785)	rnpepl1 (ENSDLAG00005033486)	ENSDLAG00005033666 ##22	ap2m1b (ENSDLAG00005031497)	mmp23bb (ENSDLAG00005024567)	ENSDLAG00005004179	ENSDLAG00005008055	ENSDLAG00005028273	ENSDLAG00005004857	ENSDLAG00005026870	DGKD (ENSDLAG00005018246)	ENSDLAG00005017916	ENSDLAG00005004126	atg16l1 (ENSDLAG00005034415)	ENSDLAG00005034127	ENSDLAG00005028029	ENSDLAG00005017026	ENSDLAG00005029057
Large yellow croaker	MODERN SPECIES	479	ENSLCRG00005004069	ENSLCRG00005004068	ENSLCRG00005004067	ENSLCRG00005004066	ENSLCRG00005004065	ENSLCRG00005004063	ENSLCRG00005004062	ENSLCRG00005004061	polr2d (ENSLCRG00005004059)	ENSLCRG00005004058	ABCF3 (ENSLCRG00005004043)	LRCH3 (ENSLCRG00005004031)	rpl35a (ENSLCRG00005004028)	abcc5 (ENSLCRG00005003010)	rnpepl1 (ENSLCRG00005002986)	ENSLCRG00005002985 ##22	ap2m1b (ENSLCRG00005002833)	mmp23bb (ENSLCRG00005002823)	ENSLCRG00005002818	eif2a (ENSLCRG00005002283)	tsen34 (ENSLCRG00005002276)	MINDY4B (ENSLCRG00005002271)	clrn1 (ENSLCRG00005002268)	MASP1 (ENSLCRG00005002245)	ENSLCRG00005002234	DGKD (ENSLCRG00005000665)	ENSLCRG00005000582	sagb (ENSLCRG00005000416)	atg16l1 (ENSLCRG00005000242)	ENSLCRG00005000145	ENSLCRG00005000138
Perciformes	ANCESTRAL SPECIES	30	ENSGT00950000183048.b.b.a.c.b	ENSGT00950000183048.b.b.a.d.a.b.a.b	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167612	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165747	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053.d	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b
Perciformes_a	ANCESTRAL SPECIES	39	ENSGT00950000183023.B	ENSGT00950000183048.b.b.a.d.a.a.a.a	ENSGT00950000183048.b.b.a.c.b	ENSGT00950000183048.b.b.a.d.a.b.a.b	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165747	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053.d	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00940000176181	ENSGT00950000182985.a.b.b
Channel bull blenny	MODERN SPECIES	279																ENSCGOG00000022530 ##22	ENSCGOG00000022534
Pike perch	MODERN SPECIES	187	ece2b (ENSSLUG00000007872)	ENSSLUG00000007836	ENSSLUG00000007831	polr2d (ENSSLUG00000007763)	ENSSLUG00000007736	ENSSLUG00000007729	ABCF3 (ENSSLUG00000007538)	ENSSLUG00000007181	ENSSLUG00000007132	ENSSLUG00000019826	rpl35a (ENSSLUG00000019823)	ENSSLUG00000019819	abcc5 (ENSSLUG00000019812)	rnpepl1 (ENSSLUG00000019806)	ENSSLUG00000019801	ENSSLUG00000019796 ##22
Cottioidei	ANCESTRAL SPECIES	4	ENSGT00950000183048.b.b.a.d.a.b.a.b	ENSGT00950000183048.b.b.a.c.b	ENSGT00440000038181	ENSGT00940000153680.b	ENSGT00390000006450	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167612	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000160400	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053.d	ENSGT00390000003912	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b	ENSGT01030000234590.A.a.a	ENSGT00940000153680.a
Stickleback	MODERN SPECIES		ENSGACG00000004603	ENSGACG00000004606	ENSGACG00000004608	ENSGACG00000004611	ENSGACG00000004612	spcs2 (ENSGACG00000004619)	ENSGACG00000004628	lipt2 (ENSGACG00000004631)	ENSGACG00000004636	polr2d (ENSGACG00000004639)	ENSGACG00000004650	ABCF3 (ENSGACG00000004656)	ENSGACG00000004682	rpl35a (ENSGACG00000004699)	rnpepl1 (ENSGACG00000004711)	ENSGACG00000004718 ##22	ENSGACG00000004728	ENSGACG00000004731	mmp23bb (ENSGACG00000004741)	ENSGACG00000004745	eif2a (ENSGACG00000004748)	tsen34 (ENSGACG00000004800)	clrn1 (ENSGACG00000004805)	MASP1 (ENSGACG00000004811)	ENSGACG00000004816	ENSGACG00000004822	DGKD (ENSGACG00000004826)	IWS1 (ENSGACG00000004866)	wdr74 (ENSGACG00000004875)	zgc:162872 (ENSGACG00000004876)	ilkap (ENSGACG00000004890)
Lumpfish	MODERN SPECIES	4	ENSCLMG00005007505	spcs2 (ENSCLMG00005007507)	lipt2 (ENSCLMG00005007509)	ENSCLMG00005007511	ENSCLMG00005007513	polr2d (ENSCLMG00005007516)	ENSCLMG00005007531	ENSCLMG00005007549	ABCF3 (ENSCLMG00005007561)	LRCH3 (ENSCLMG00005008274)	ENSCLMG00005008347	ENSCLMG00005008349	ENSCLMG00005008350	rpl35a (ENSCLMG00005008351)	rnpepl1 (ENSCLMG00005008354)	ENSCLMG00005008665 ##22	ap2m1b (ENSCLMG00005001382)	mmp23bb (ENSCLMG00005001497)	zgc:92744 (ENSCLMG00005001993)	eif2a (ENSCLMG00005002005)	tsen34 (ENSCLMG00005003919)	clrn1 (ENSCLMG00005003920)	MASP1 (ENSCLMG00005003921)	ENSCLMG00005004156	DGKD (ENSCLMG00005004172)	sagb (ENSCLMG00005005716)	atg16l1 (ENSCLMG00005005723)	ENSCLMG00005005735	spint2 (ENSCLMG00005005738)	ENSCLMG00005005740	ENSCLMG00005005741
Ovalentaria	ANCESTRAL SPECIES	8	ENSGT00940000158353	ENSGT00950000183023.B	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167717	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b
Atherinomorphae	ANCESTRAL SPECIES	26	ENSGT00950000183048.b.b.a.c.b	ENSGT00950000183048.b.b.a.d.a.b.a.b	ENSGT00950000183048.b.b.a.d.a.b.b.b	ENSGT01100000263522.B.b.h.k.b	ENSGT01100000263522.B.b.h.k.a	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT01030000234590.A.a.a	ENSGT00940000153680.a	ENSGT00940000167283.b
Oryzias	ANCESTRAL SPECIES	32	ENSGT00940000155414	ENSGT00940000158551	ENSGT00940000153680.b	ENSGT00390000006450	ENSGT00940000158353	ENSGT00950000183023.B	ENSGT00950000183048.b.b.a.d.a.a.b.j	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT01030000234590.A.a.a	ENSGT00940000153680.a	ENSGT00940000167283.b
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00950000182903.a.b.j ##22
Chinese medaka	MODERN SPECIES	2427																ENSOSIG00000001866 ##22
Oryzias_b	ANCESTRAL SPECIES	32	ENSGT00940000155414	ENSGT00940000158551	ENSGT00390000006450	ENSGT00940000158353	ENSGT00950000183023.B	ENSGT00950000183048.b.b.a.d.a.a.b.i.b	ENSGT00950000183048.b.b.a.d.a.a.b.j	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT01030000234590.A.a.a	ENSGT00940000153680.a	ENSGT00940000167283.b
Javanese ricefish	MODERN SPECIES	4	ENSOJAG00000011519	rffl (ENSOJAG00000011668)	eif4h (ENSOJAG00000011696)	ENSOJAG00000012007	ENSOJAG00000012021	lipt2 (ENSOJAG00000012032)	ENSOJAG00000012497	ENSOJAG00000012521	ENSOJAG00000012536	ENSOJAG00000012544	ENSOJAG00000012560	ABCF3 (ENSOJAG00000012572)	rpl35a (ENSOJAG00000012766)	rnpepl1 (ENSOJAG00000013262)	ENSOJAG00000013293	ENSOJAG00000013313 ##22	mmp23bb (ENSOJAG00000013342)	zgc:92744 (ENSOJAG00000013347)	tsen34 (ENSOJAG00000014154)	clrn1 (ENSOJAG00000014164)	MASP1 (ENSOJAG00000014176)	ENSOJAG00000014267	ENSOJAG00000015478	sagb (ENSOJAG00000015525)	ENSOJAG00000015683	ENSOJAG00000016290	ENSOJAG00000016307	ENSOJAG00000016426	ENSOJAG00000016445	NYAP2 (ENSOJAG00000016464)	atp1b3b (ENSOJAG00000016472)
Cyprinodontiformes	ANCESTRAL SPECIES	55	ENSGT00940000162644	ENSGT00390000003912	ENSGT00730000111053	ENSGT00940000161729.n	ENSGT00940000165683	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22
Cyprinodontoidei	ANCESTRAL SPECIES	66	ENSGT00940000162644	ENSGT00390000003912	ENSGT00730000111053	ENSGT00940000161729.n	ENSGT00940000165683	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22
Poeciliinae	ANCESTRAL SPECIES	30	ENSGT00940000162644	ENSGT00390000003912	ENSGT00730000111053	ENSGT00940000161729.n	ENSGT00940000165683	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604.m	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.a.a.a.h	ENSGT00950000183048.b.b.a.d.a.a.a.b.a.b	ENSGT00950000183048.b.b.a.d.a.a.a.a.g	ENSGT00950000183048.b.b.a.d.a.a.a.b.a.a.a.a	ENSGT00950000183048.b.b.a.c.b	ENSGT00940000160131	ENSGT00440000038181	ENSGT00940000153680.b	ENSGT00390000006450	ENSGT00940000158353.n	ENSGT00950000183023.B	ENSGT01100000263522.B.b.h.k.b.c	ENSGT00950000183048.b.b.a.d.a.b.a.b.b	ENSGT00950000183048.b.b.a.d.a.b.a.b.a
Poecilia	ANCESTRAL SPECIES	2	ENSGT00940000162644	ENSGT00390000003912	ENSGT00730000111053	ENSGT00940000161729.n	ENSGT00940000165683	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604.m	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.a.a.a.g	ENSGT00950000183048.b.b.a.d.a.a.a.b.a.b	ENSGT00950000183048.b.b.a.c.b	ENSGT00950000183048.b.b.a.d.a.a.a.b.a.a.a.a	ENSGT00950000183048.b.b.a.d.a.a.a.b.b	ENSGT00950000183048.b.b.a.d.a.a.a.b.a.a.b	ENSGT00940000160131	ENSGT00440000038181	ENSGT00940000153680.b	ENSGT00390000006450	ENSGT00940000158353.n	ENSGT00950000183023.B	ENSGT01100000263522.B.b.h.k.b.c	ENSGT00950000183048.b.b.a.d.a.b.a.b.b
NAME_6	ANCESTRAL SPECIES	14	ENSGT00940000162644	ENSGT00390000003912	ENSGT00730000111053	ENSGT00940000161729.n	ENSGT00940000165683	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604.m	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.a.a.a.g.b	ENSGT00950000183048.b.b.a.d.a.a.a.b.a.b	ENSGT00950000183048.b.b.a.d.a.a.a.b.a.a.a.b	ENSGT00950000183048.b.b.a.d.a.a.a.a.g.a	ENSGT00950000183048.b.b.a.d.a.a.a.b.a.a.a.a	ENSGT00950000183048.b.b.a.d.a.a.a.b.b	ENSGT00950000183048.b.b.a.d.a.a.a.b.a.a.b	ENSGT00940000160131	ENSGT00440000038181	ENSGT00940000153680.b	ENSGT00390000006450	ENSGT00940000158353.n	ENSGT00950000183023.B	ENSGT01100000263522.B.b.h.k.b.c
Amazon molly	MODERN SPECIES	587	MASP1 (ENSPFOG00000008436)	clrn1 (ENSPFOG00000008553)	MINDY4B (ENSPFOG00000008565)	tsen34 (ENSPFOG00000008679)	eif2a (ENSPFOG00000008701)	zgc:92744 (ENSPFOG00000008903)	mmp23bb (ENSPFOG00000008920)	polr2d (ENSPFOG00000008969)	ENSPFOG00000008989	ENSPFOG00000024373	ABCF3 (ENSPFOG00000009000)	LRCH3 (ENSPFOG00000009117)	rpl35a (ENSPFOG00000009510)	abcc5 (ENSPFOG00000009529)	rnpepl1 (ENSPFOG00000022551)	ENSPFOG00000009989 ##22	ENSPFOG00000020021	ENSPFOG00000020022	ENSPFOG00000020023	ENSPFOG00000024712	ENSPFOG00000022895	ENSPFOG00000024597	ENSPFOG00000020025	ENSPFOG00000020026	abcg1 (ENSPFOG00000010302)	spcs2 (ENSPFOG00000010481)	rnf169 (ENSPFOG00000010518)	lipt2 (ENSPFOG00000010535)	pgm2l1 (ENSPFOG00000010561)	ENSPFOG00000010797	ENSPFOG00000023722
Sailfin molly	MODERN SPECIES	461	clrn1 (ENSPLAG00000017327)	tsen34 (ENSPLAG00000017309)	eif2a (ENSPLAG00000017279)	zgc:92744 (ENSPLAG00000017245)	mmp23bb (ENSPLAG00000017230)	polr2d (ENSPLAG00000017210)	ENSPLAG00000017197	ENSPLAG00000017169	ABCF3 (ENSPLAG00000017150)	LRCH3 (ENSPLAG00000017076)	ENSPLAG00000017052	rpl35a (ENSPLAG00000017033)	abcc5 (ENSPLAG00000017014)	rnpepl1 (ENSPLAG00000017003)	ENSPLAG00000016997	ENSPLAG00000016989 ##22	ENSPLAG00000016937	ENSPLAG00000016927	ENSPLAG00000016918	ENSPLAG00000016912	ENSPLAG00000016902	ENSPLAG00000016898	abcg1 (ENSPLAG00000016889)	spcs2 (ENSPLAG00000016863)	rnf169 (ENSPLAG00000000383)	lipt2 (ENSPLAG00000016840)	pgm2l1 (ENSPLAG00000016838)	ENSPLAG00000016831	ENSPLAG00000016818	ENSPLAG00000016808	ENSPLAG00000016798
Guppy	MODERN SPECIES	443	tsen34 (ENSPREG00000021784)	eif2a (ENSPREG00000021793)	zgc:92744 (ENSPREG00000021804)	mmp23bb (ENSPREG00000021817)	ENSPREG00000021840	polr2d (ENSPREG00000021862)	ENSPREG00000021873	ABCF3 (ENSPREG00000021879)	ABCF3 (ENSPREG00000021886)	ENSPREG00000021905	ENSPREG00000021915	rpl35a (ENSPREG00000000610)	abcc5 (ENSPREG00000000648)	rnpepl1 (ENSPREG00000000869)	ENSPREG00000000944	ENSPREG00000000958 ##22	ENSPREG00000001073	ENSPREG00000001134	ENSPREG00000001140	ENSPREG00000001166	ENSPREG00000001175	abcg1 (ENSPREG00000001187)	spcs2 (ENSPREG00000001283)	lipt2 (ENSPREG00000001611)	pgm2l1 (ENSPREG00000001652)	ENSPREG00000001703	ENSPREG00000001708	ENSPREG00000001724	ENSPREG00000001732	ENSPREG00000001763	ENSPREG00000001850
Platyfish	MODERN SPECIES	9	ENSXMAG00000026831	MINDY4B (ENSXMAG00000014003)	tsen34 (ENSXMAG00000024266)	eif2a (ENSXMAG00000014008)	SERP1 (ENSXMAG00000014025)	mmp23bb (ENSXMAG00000014027)	polr2d (ENSXMAG00000014031)	ENSXMAG00000014037	ENSXMAG00000029286	ABCF3 (ENSXMAG00000014038)	LRCH3 (ENSXMAG00000014055)	rpl35a (ENSXMAG00000014075)	abcc5 (ENSXMAG00000014077)	rnpepl1 (ENSXMAG00000014126)	ENSXMAG00000027654	ENSXMAG00000014155 ##22	ENSXMAG00000014186	ENSXMAG00000014194	ENSXMAG00000014188	ENSXMAG00000014197	ENSXMAG00000029148	ENSXMAG00000027174	abcg1 (ENSXMAG00000014199)	spcs2 (ENSXMAG00000014237)	ENSXMAG00000025497	lipt2 (ENSXMAG00000013042)	pgm2l1 (ENSXMAG00000013046)	ENSXMAG00000023451	ENSXMAG00000019509	ENSXMAG00000030094	ENSXMAG00000024382
NAME_4	ANCESTRAL SPECIES	369									ENSGT00940000155604	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22
Sheepshead minnow	MODERN SPECIES	1646											ENSCVAG00000023026	rpl35a (ENSCVAG00000023042)	abcc5 (ENSCVAG00000023052)	rnpepl1 (ENSCVAG00000023062)	ENSCVAG00000023066	ENSCVAG00000023081 ##22	ENSCVAG00000023127
Mummichog	MODERN SPECIES	1255														rnpepl1 (ENSFHEG00000012941)	ENSFHEG00000012949	ENSFHEG00000012975 ##22
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT00950000182903.a.b.j ##22
Turquoise killifish	MODERN SPECIES	1615	DGKD (ENSNFUG00015003439)	ENSNFUG00015003425	MASP1 (ENSNFUG00015003420)	CLRN1 (ENSNFUG00015003418)	MINDY4B (ENSNFUG00015003413)	tsen34 (ENSNFUG00015003404)	EIF2A (ENSNFUG00015003375)	zgc:92744 (ENSNFUG00015003372)	MMP23BB (ENSNFUG00015003371)	polr2d (ENSNFUG00015003369)	ENSNFUG00015003368	ENSNFUG00015003367	ABCF3 (ENSNFUG00015003331)	LRCH3 (ENSNFUG00015003311)	rpl35a (ENSNFUG00015003307)	ENSNFUG00015003297 ##22	ENSNFUG00015003290	ENSNFUG00015003209	ENSNFUG00015003174	ENSNFUG00015003169	ENSNFUG00015003165	ENSNFUG00015003161	ENSNFUG00015003156	ENSNFUG00015003154	ENSNFUG00015003150	ENSNFUG00015003145	ARRB1 (ENSNFUG00015002135)	ENSNFUG00015001808	ATG16L2 (ENSNFUG00015001793)	mt-atp6 (ENSNFUG00015001778)	ANO7 (ENSNFUG00015001754)
Ovalentaria_B	ANCESTRAL SPECIES	31	ENSGT00950000183048.b.b.a.d.a.b.a.a.b	ENSGT00950000183048.b.b.a.d.a.a.a.a	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00940000167717	ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a	ENSGT00940000160348	ENSGT00950000182985.a.b.b
Pomacentridae	ANCESTRAL SPECIES	64							ENSGT00390000004912	ENSGT00940000165563.b	ENSGT00940000171017	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00440000038181	ENSGT00940000153680.b	ENSGT00390000006450
Pomacentridae_A	ANCESTRAL SPECIES	111												ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00440000038181	ENSGT00940000153680.b	ENSGT00390000006450
Amphiprion	ANCESTRAL SPECIES	97	ENSGT00560000077232.B.g.a	ENSGT00940000155350.g	ENSGT00940000156251.a	ENSGT00950000182988.a.b.a	ENSGT00530000063816.c.b	ENSGT00390000010063	ENSGT00940000158330	ENSGT00940000155604	ENSGT00940000171017	ENSGT00940000165563.b	ENSGT00390000004912	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000159223.c	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000159041	ENSGT00940000155435.B.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00440000038181	ENSGT00940000153680.b	ENSGT00390000006450
Clown anemonefish	MODERN SPECIES	1367				aqp11 (ENSAOCG00000007596)	clns1a (ENSAOCG00000000418)	ENSAOCG00000007529	LRCH3 (ENSAOCG00000007507)	ABCF3 (ENSAOCG00000007426)	ENSAOCG00000007356	ENSAOCG00000007342	polr2d (ENSAOCG00000007295)	rpl35a (ENSAOCG00000007269)	abcc5 (ENSAOCG00000007240)	rnpepl1 (ENSAOCG00000001967)	ENSAOCG00000007107	ENSAOCG00000007097 ##22	ap2m1b (ENSAOCG00000007028)	mmp23bb (ENSAOCG00000006964)	zgc:92744 (ENSAOCG00000006932)	eif2a (ENSAOCG00000006919)	tsen34 (ENSAOCG00000006905)	MINDY4B (ENSAOCG00000006871)	clrn1 (ENSAOCG00000006840)	MASP1 (ENSAOCG00000006825)
Orange clownfish	MODERN SPECIES	23	myo7aa (ENSAPEG00000018128)	GDPD4 (ENSAPEG00000018279)	pak1 (ENSAPEG00000018331)	aqp11 (ENSAPEG00000018404)	clns1a (ENSAPEG00000018416)	LRCH3 (ENSAPEG00000018498)	ABCF3 (ENSAPEG00000018567)	ENSAPEG00000018642	ENSAPEG00000018652	polr2d (ENSAPEG00000018714)	ENSAPEG00000018728	rpl35a (ENSAPEG00000018771)	abcc5 (ENSAPEG00000018801)	rnpepl1 (ENSAPEG00000018895)	ENSAPEG00000018951	ENSAPEG00000018966 ##22	ap2m1b (ENSAPEG00000019075)	mmp23bb (ENSAPEG00000019113)	zgc:92744 (ENSAPEG00000019137)	eif2a (ENSAPEG00000019145)	tsen34 (ENSAPEG00000019171)	MINDY4B (ENSAPEG00000019213)	clrn1 (ENSAPEG00000019249)	MASP1 (ENSAPEG00000019289)	ENSAPEG00000019359	DGKD (ENSAPEG00000019414)	ENSAPEG00000019474	sagb (ENSAPEG00000019499)	spcs2 (ENSAPEG00000019542)	rnf169 (ENSAPEG00000019558)	lipt2 (ENSAPEG00000019571)
Spiny chromis	MODERN SPECIES	2386												rpl35a (ENSAPOG00000005979)	abcc5 (ENSAPOG00000005958)	rnpepl1 (ENSAPOG00000005878)	ENSAPOG00000005797	ENSAPOG00000005788 ##22
Bicolor damselfish	MODERN SPECIES	1534		ENSSPAG00000013474	ENSSPAG00000013457	aqp11 (ENSSPAG00000013426)	clns1a (ENSSPAG00000013399)	polr2d (ENSSPAG00000013386)	ENSSPAG00000013290	ENSSPAG00000013269	ABCF3 (ENSSPAG00000013145)	LRCH3 (ENSSPAG00000013100)	rpl35a (ENSSPAG00000013060)	ENSSPAG00000013044	abcc5 (ENSSPAG00000012992)	rnpepl1 (ENSSPAG00000012958)	ENSSPAG00000012944	ENSSPAG00000012866 ##22	ap2m1b (ENSSPAG00000012833)	mmp23bb (ENSSPAG00000012793)
Cichlidae	ANCESTRAL SPECIES	35	ENSGT00940000153936.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000159041	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000155604	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000180004	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00940000171017	ENSGT00940000165563.b	ENSGT00390000004912	ENSGT00940000167717	ENSGT00950000183048.b.b.a.d.a.b.a.a.a.b	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.a.a.a	ENSGT00950000183048.b.b.a.d.b.b	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00950000183023.B	ENSGT00940000158353
Pseudocrenilabrinae	ANCESTRAL SPECIES	19	ENSGT00940000153936.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000159041	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000155604	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00940000171017.f	ENSGT00940000165563.b	ENSGT00390000004912	ENSGT00950000183048.b.b.a.d.b.b	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00950000183023.B	ENSGT00940000158353	ENSGT00390000006450	ENSGT00940000153680.b	ENSGT00440000038181	ENSGT00940000160131	ENSGT00950000183048.b.b.a.c.b.ab
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	15	ENSGT00940000153936.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000159041.r	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072	ENSGT00940000155604	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00940000171017.f	ENSGT00940000165563.b	ENSGT00390000004912	ENSGT00940000155435.B.a	ENSGT01010000222847.b	ENSGT00950000183023.B	ENSGT00940000158353	ENSGT00390000006450	ENSGT00940000153680.b	ENSGT00440000038181	ENSGT00940000160131	ENSGT00950000183048.b.b.a.c.b.ab
Haplochromini	ANCESTRAL SPECIES	15	ENSGT00940000153936.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000159041.r	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072.c.b	ENSGT00940000155604	ENSGT00940000158330	ENSGT01030000235136	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT01020000230608	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00940000171017.f	ENSGT00940000165563.b	ENSGT00390000004912	ENSGT00940000155435.B.a	ENSGT01010000222847.b	ENSGT00950000183023.B	ENSGT00940000158353	ENSGT00390000006450	ENSGT00940000153680.b	ENSGT00440000038181	ENSGT00940000160131	ENSGT00950000183048.b.b.a.c.b.ab
Haplochromini_A	ANCESTRAL SPECIES	23	ENSGT01030000234590.A.a.a	ENSGT00940000160348	ENSGT00940000153936.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000159041.r	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072.c.b	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00940000171017.f	ENSGT00940000165563.b	ENSGT00390000004912	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.a.a.a.a	ENSGT00950000183048.b.b.a.d.b.b	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00940000155435.B.a	ENSGT01010000222847.b	ENSGT00950000183023.B	ENSGT00940000158353	ENSGT00390000006450
Haplochromini_B	ANCESTRAL SPECIES	27	ENSGT01030000234590.A.a.a	ENSGT00940000160348	ENSGT00940000153936.a	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000159041.r	ENSGT00390000003912	ENSGT00940000162644	ENSGT00850000132319.a.a.a	ENSGT00950000183084.b.b	ENSGT00940000165072.c.b	ENSGT00940000155604	ENSGT00940000158330	ENSGT00390000016972	ENSGT00940000155470.b	ENSGT00940000160400	ENSGT00950000182903.a.b.j ##22	ENSGT00940000165683	ENSGT00940000161729.n	ENSGT00730000111053	ENSGT00940000171017.f	ENSGT00940000165563.b	ENSGT00940000167717	ENSGT00390000018035	ENSGT00950000183048.b.b.a.d.a.a.b	ENSGT00950000183048.b.b.a.d.b.b	ENSGT00950000183048.b.b.a.d.a.b.b.a.a.b	ENSGT00940000155435.B.a	ENSGT01010000222847.b	ENSGT00950000183023.B	ENSGT00940000158353	ENSGT00390000006450
Zebra mbuna	MODERN SPECIES	1096	ENSMZEG00005002518	ENSMZEG00005002509	atg16l1 (ENSMZEG00005002443)	sagb (ENSMZEG00005002423)	DGKD (ENSMZEG00005002330)	tsen34 (ENSMZEG00005002313)	MINDY4B (ENSMZEG00005002294)	clrn1 (ENSMZEG00005002286)	MASP1 (ENSMZEG00005002267)	ENSMZEG00005002237	ABCF3 (ENSMZEG00005002173)	ENSMZEG00005002113	rpl35a (ENSMZEG00005002093)	abcc5 (ENSMZEG00005002058)	rnpepl1 (ENSMZEG00005002048)	ENSMZEG00005001966 ##22	mmp23bb (ENSMZEG00005001931)	zgc:92744 (ENSMZEG00005001918)	ENSMZEG00005001902	eif2a (ENSMZEG00005001832)	ENSMZEG00005001819	ENSMZEG00005001783	ENSMZEG00005001773	ENSMZEG00005001759	ENSMZEG00005001755	ENSMZEG00005001745	ENSMZEG00005001731	ENSMZEG00005001727	ENSMZEG00005001699	pgm2l1 (ENSMZEG00005001675)	lipt2 (ENSMZEG00005001668)
P. nyererei	MODERN SPECIES	613	atg16l1 (ENSPNYG00000023111)	sagb (ENSPNYG00000023148)	DGKD (ENSPNYG00000023183)	ENSPNYG00000023191	MINDY4B (ENSPNYG00000023193)	clrn1 (ENSPNYG00000023198)	ENSPNYG00000023200	ENSPNYG00000023202	ENSPNYG00000023207	ABCF3 (ENSPNYG00000023211)	ENSPNYG00000023220	rpl35a (ENSPNYG00000023240)	ENSPNYG00000023244	abcc5 (ENSPNYG00000023247)	rnpepl1 (ENSPNYG00000023257)	ENSPNYG00000023263 ##22	mmp23bb (ENSPNYG00000023270)	zgc:92744 (ENSPNYG00000023272)	eif2a (ENSPNYG00000023276)	ENSPNYG00000023283	ENSPNYG00000023288	ENSPNYG00000023293
Burton s mouthbrooder	MODERN SPECIES	838			DGKD (ENSHBUG00000016587)	tsen34 (ENSHBUG00000016593)	MINDY4B (ENSHBUG00000016616)	clrn1 (ENSHBUG00000016627)	MASP1 (ENSHBUG00000016638)	ENSHBUG00000016653	ABCF3 (ENSHBUG00000016701)	ENSHBUG00000016714	ENSHBUG00000016729	rpl35a (ENSHBUG00000016737)	abcc5 (ENSHBUG00000016951)	rnpepl1 (ENSHBUG00000017000)	ENSHBUG00000017008	ENSHBUG00000017110 ##22	mmp23bb (ENSHBUG00000017168)	zgc:92744 (ENSHBUG00000017184)	eif2a (ENSHBUG00000017252)	ENSHBUG00000017317	ENSHBUG00000017344
Nile tilapia	MODERN SPECIES	5	atg16l1 (ENSONIG00000017239)	sagb (ENSONIG00000017242)	DGKD (ENSONIG00000017245)	tsen34 (ENSONIG00000017253)	MINDY4B (ENSONIG00000017254)	ENSONIG00000033568	clrn1 (ENSONIG00000017256)	MASP1 (ENSONIG00000017257)	ENSONIG00000017263	ABCF3 (ENSONIG00000017264)	ENSONIG00000017268	rpl35a (ENSONIG00000028756)	ENSONIG00000033856	abcc5 (ENSONIG00000008285)	ENSONIG00000040474	ENSONIG00000017280 ##22	mmp23bb (ENSONIG00000017283)	zgc:92744 (ENSONIG00000030185)	eif2a (ENSONIG00000017284)	ENSONIG00000017290	ENSONIG00000039883	ENSONIG00000034727	ENSONIG00000017294	ENSONIG00000030906	rffl (ENSONIG00000037182)	eif4h (ENSONIG00000001042)	ANO7 (ENSONIG00000001045)	ENSONIG00000041381	ENSONIG00000032051	ece2b (ENSONIG00000001048)	ENSONIG00000036400
Midas cichlid	MODERN SPECIES	97																ENSACIG00000024100 ##22	ENSACIG00000024099	mmp23bb (ENSACIG00000024098)	zgc:92744 (ENSACIG00000024096)	eif2a (ENSACIG00000024095)	ENSACIG00000024093	ENSACIG00000024091	ENSACIG00000024090	AXL (ENSACIG00000024084)	LGALS4 (ENSACIG00000024079)	ENSACIG00000024074	rasgrp4 (ENSACIG00000024073)	HNRNPUL1 (ENSACIG00000024072)	opa3 (ENSACIG00000024071)	ppp1r13l (ENSACIG00000024070)	TMEM91 (ENSACIG00000024068)