Mus	ANCESTRAL SPECIES	6	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856	ENSGT00940000160753 #17	ENSGT00390000017748 #16	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c #29	ENSGT00950000183110.a #30	ENSGT00550000075064 #31	ENSGT00950000182755.b.a.a.b.a.a.k.a.a #32	ENSGT00940000164244.b #33	ENSGT00950000182755.b.a.a.b.a.a.k.b.a #34	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b #35	ENSGT00950000182755.b.a.a.b.a.a.k.b.b #36	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a #37
Shrew mouse	MODERN SPECIES	10	Cope (MGP_PahariEiJ_G0021605) #7	Ddx49 (MGP_PahariEiJ_G0021604) #8	Homer3 (MGP_PahariEiJ_G0021603) #9	Sugp2 (MGP_PahariEiJ_G0021602) #10	Armc6 (MGP_PahariEiJ_G0021601) #11	Slc25a42 (MGP_PahariEiJ_G0021600) #12	Tmem161a (MGP_PahariEiJ_G0021599) #13	MGP_PahariEiJ_G0021598 #14	MGP_PahariEiJ_G0021597 #15	Nr2c2ap (MGP_PahariEiJ_G0021596) #16	Rfxank (MGP_PahariEiJ_G0021595) #17	Ncan (MGP_PahariEiJ_G0021594) #18	Hapln4 (MGP_PahariEiJ_G0021593) #19	Tm6sf2 (MGP_PahariEiJ_G0021592) #20	Sugp1 (MGP_PahariEiJ_G0021591) #21	Mau2 (MGP_PahariEiJ_G0021590) #22	Gatad2a (MGP_PahariEiJ_G0021589) #23	Tssk6 (MGP_PahariEiJ_G0021588) #24	Ndufa13 (MGP_PahariEiJ_G0021587) #25	Yjefn3 (MGP_PahariEiJ_G0021586) #26	Cilp2 (MGP_PahariEiJ_G0021585) #27	Pbx4 (MGP_PahariEiJ_G0021584) #28	Lpar2 (MGP_PahariEiJ_G0021583) #29	Gmip (MGP_PahariEiJ_G0021582) #30	Atp13a1 (MGP_PahariEiJ_G0021581) #31	Zfp866 (MGP_PahariEiJ_G0021580) #32	MGP_PahariEiJ_G0021579 #33	Zfp963 (MGP_PahariEiJ_G0021578) #34	Zfp869 (MGP_PahariEiJ_G0021577) #35	Zfp964 (MGP_PahariEiJ_G0021576) #36	Zfp868 (MGP_PahariEiJ_G0021575) #37
Mus_A	ANCESTRAL SPECIES	8	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856	ENSGT00940000160753 #17	ENSGT00390000017748 #16	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c #29	ENSGT00950000183110.a #30	ENSGT00550000075064 #31	ENSGT00950000182755.b.a.a.b.a.a.k.a.a #32	ENSGT00940000164244.b #33	ENSGT00950000182755.b.a.a.b.a.a.k.b.a #34	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b #35	ENSGT00950000182755.b.a.a.b.a.a.k.b.b #36	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a #37
Mus_B	ANCESTRAL SPECIES	6	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856	ENSGT00940000160753 #17	ENSGT00390000017748 #16	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c #29	ENSGT00950000183110.a #30	ENSGT00550000075064 #31	ENSGT00950000182755.b.a.a.b.a.a.k.a.a #32	ENSGT00940000164244.b #33	ENSGT00950000182755.b.a.a.b.a.a.k.b.a #34	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b #35	ENSGT00950000182755.b.a.a.b.a.a.k.b.b #36	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a #37
Mouse	MODERN SPECIES	17	Cope (ENSMUSG00000055681) #7	Ddx49 (ENSMUSG00000057788) #8	Homer3 (ENSMUSG00000003573) #9	Sugp2 (ENSMUSG00000036054) #10	Armc6 (ENSMUSG00000002343) #11	Slc25a42 (ENSMUSG00000002346) #12	Tmem161a (ENSMUSG00000002342) #13	Mef2b (ENSMUSG00000079033) #14	Borcs8 (ENSMUSG00000002345)	Nr2c2ap (ENSMUSG00000071078) #16	Rfxank (ENSMUSG00000036120) #17	Ncan (ENSMUSG00000002341) #18	Hapln4 (ENSMUSG00000007594) #19	Tm6sf2 (ENSMUSG00000036151) #20	Sugp1 (ENSMUSG00000011306) #21	Mau2 (ENSMUSG00000031858) #22	Gatad2a (ENSMUSG00000036180) #23	Tssk6 (ENSMUSG00000047654) #24	Ndufa13 (ENSMUSG00000036199) #25	Yjefn3 (ENSMUSG00000048967) #26	Cilp2 (ENSMUSG00000044006) #27	Pbx4 (ENSMUSG00000031860) #28	Lpar2 (ENSMUSG00000031861) #29	Gmip (ENSMUSG00000036246) #30	Atp13a1 (ENSMUSG00000031862) #31	Zfp866 (ENSMUSG00000043090) #32	Gm20422 (ENSMUSG00000092544)	Zfp963 (ENSMUSG00000092260) #34	Zfp869 (ENSMUSG00000054648) #35	Zfp964 (ENSMUSG00000091764) #36	Zfp868 (ENSMUSG00000060427) #37
Mus_C	ANCESTRAL SPECIES	5	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856	ENSGT00940000160753 #17	ENSGT00390000017748 #16	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT00940000162643 #28	ENSGT01050000244941.B.c #29	ENSGT00950000183110.a #30	ENSGT00550000075064 #31	ENSGT00950000182755.b.a.a.b.a.a.k.a.a #32	ENSGT00940000164244.b #33	ENSGT00950000182755.b.a.a.b.a.a.k.b.a #34	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b #35	ENSGT00950000182755.b.a.a.b.a.a.k.b.b #36	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a #37
Steppe mouse	MODERN SPECIES	2734	Cope (ENSMSIG00000032053) #7	Ddx49 (ENSMSIG00000032052) #8	Homer3 (ENSMSIG00000032051) #9	Sugp2 (ENSMSIG00000032050) #10	Armc6 (ENSMSIG00000032049) #11	Slc25a42 (ENSMSIG00000032048) #12	Tmem161a (ENSMSIG00000032047) #13	ENSMSIG00000032046 #14	Borcs8 (ENSMSIG00000032045)	Rfxank (ENSMSIG00000032044) #17	Nr2c2ap (ENSMSIG00000032043) #16	Ncan (ENSMSIG00000032040) #18	Hapln4 (ENSMSIG00000032039) #19	Tm6sf2 (ENSMSIG00000032038) #20	Sugp1 (ENSMSIG00000032037) #21	Mau2 (ENSMSIG00000032036) #22	Gatad2a (ENSMSIG00000032035) #23	Tssk6 (ENSMSIG00000032034) #24	Ndufa13 (ENSMSIG00000032033) #25	Yjefn3 (ENSMSIG00000032032) #26	Cilp2 (ENSMSIG00000032031) #27	Pbx4 (ENSMSIG00000032030) #28
spretus	MODERN SPECIES	17	Cope (MGP_SPRETEiJ_G0032258) #7	Ddx49 (MGP_SPRETEiJ_G0032257) #8	Homer3 (MGP_SPRETEiJ_G0032256) #9	Sugp2 (MGP_SPRETEiJ_G0032255) #10	Armc6 (MGP_SPRETEiJ_G0032254) #11	Slc25a42 (MGP_SPRETEiJ_G0032253) #12	Tmem161a (MGP_SPRETEiJ_G0032252) #13	MGP_SPRETEiJ_G0032251 #14	MGP_SPRETEiJ_G0032250 #14	Nr2c2ap (MGP_SPRETEiJ_G0032249) #16	Rfxank (MGP_SPRETEiJ_G0032248) #17	Ncan (MGP_SPRETEiJ_G0032247) #18	Hapln4 (MGP_SPRETEiJ_G0032246) #19	Tm6sf2 (MGP_SPRETEiJ_G0032245) #20	Sugp1 (MGP_SPRETEiJ_G0032244) #21	Mau2 (MGP_SPRETEiJ_G0032243) #22	Gatad2a (MGP_SPRETEiJ_G0032242) #23	Tssk6 (MGP_SPRETEiJ_G0032241) #24	Ndufa13 (MGP_SPRETEiJ_G0032240) #25	Yjefn3 (MGP_SPRETEiJ_G0032239) #26	Cilp2 (MGP_SPRETEiJ_G0032238) #27	Pbx4 (MGP_SPRETEiJ_G0032237) #28	Lpar2 (MGP_SPRETEiJ_G0032236) #29	Gmip (MGP_SPRETEiJ_G0032235) #30	Atp13a1 (MGP_SPRETEiJ_G0032234) #31	Zfp866 (MGP_SPRETEiJ_G0032233) #32	MGP_SPRETEiJ_G0032232 #33	Zfp963 (MGP_SPRETEiJ_G0032231) #34	Zfp869 (MGP_SPRETEiJ_G0032230) #35	Zfp964 (MGP_SPRETEiJ_G0032229) #36	Zfp868 (MGP_SPRETEiJ_G0032228) #37
Ryukyu mouse	MODERN SPECIES	17	Cope (MGP_CAROLIEiJ_G0031140) #7	Ddx49 (MGP_CAROLIEiJ_G0031139) #8	Homer3 (MGP_CAROLIEiJ_G0031138) #9	Sugp2 (MGP_CAROLIEiJ_G0031137) #10	Armc6 (MGP_CAROLIEiJ_G0031136) #11	Slc25a42 (MGP_CAROLIEiJ_G0031135) #12	Tmem161a (MGP_CAROLIEiJ_G0031134) #13	MGP_CAROLIEiJ_G0031133 #14	MGP_CAROLIEiJ_G0031132 #14	Nr2c2ap (MGP_CAROLIEiJ_G0031131) #16	Rfxank (MGP_CAROLIEiJ_G0031130) #17	Ncan (MGP_CAROLIEiJ_G0031129) #18	Hapln4 (MGP_CAROLIEiJ_G0031128) #19	Tm6sf2 (MGP_CAROLIEiJ_G0031127) #20	Sugp1 (MGP_CAROLIEiJ_G0031126) #21	Mau2 (MGP_CAROLIEiJ_G0031125) #22	Gatad2a (MGP_CAROLIEiJ_G0031124) #23	Tssk6 (MGP_CAROLIEiJ_G0031123) #24	Ndufa13 (MGP_CAROLIEiJ_G0031122) #25	Yjefn3 (MGP_CAROLIEiJ_G0031121) #26	Cilp2 (MGP_CAROLIEiJ_G0031120) #27	Pbx4 (MGP_CAROLIEiJ_G0031119) #28	Lpar2 (MGP_CAROLIEiJ_G0031118) #29	Gmip (MGP_CAROLIEiJ_G0031117) #30	Atp13a1 (MGP_CAROLIEiJ_G0031116) #31	Zfp866 (MGP_CAROLIEiJ_G0031115) #32	MGP_CAROLIEiJ_G0031114 #33	Zfp963 (MGP_CAROLIEiJ_G0031113) #34	Zfp869 (MGP_CAROLIEiJ_G0031112) #35	Zfp964 (MGP_CAROLIEiJ_G0031111) #36	Zfp868 (MGP_CAROLIEiJ_G0031110) #37