Hystricomorpha	ANCESTRAL SPECIES	47	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT01050000244941.B.c #28	ENSGT00950000183110.a #29	ENSGT00550000075064 #30
Hystricomorpha_a	ANCESTRAL SPECIES	55	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT01050000244941.B.c #28	ENSGT00950000183110.a #29	ENSGT00550000075064 #30	ENSGT01030000234542.b.b.a.a.a.b #36	ENSGT00940000157246 #37	ENSGT00940000161678	ENSGT00940000160466	ENSGT00390000013811	ENSGT00940000157924	ENSGT00940000163163
Hystricomorpha_b	ANCESTRAL SPECIES	66	ENSGT00390000003478 #7	ENSGT00730000111231 #8	ENSGT00940000158081 #9	ENSGT00410000025695.b #10	ENSGT00390000002913 #11	ENSGT00940000158163 #12	ENSGT00390000000672.a.a #13	ENSGT00940000160699 #14	ENSGT00390000014856 #15	ENSGT00940000160753 #16	ENSGT00390000017748 #17	ENSGT00940000158649 #18	ENSGT00940000160926 #19	ENSGT00390000012913.a #20	ENSGT00410000025695.a #21	ENSGT00390000012198 #22	ENSGT00390000004097.a #23	ENSGT00940000160464 #24	ENSGT00390000000719 #25	ENSGT00390000007227.b #26	ENSGT00390000008152.B.a #27	ENSGT01050000244941.B.c #28	ENSGT00950000183110.a #29	ENSGT00550000075064 #30	ENSGT01030000234542.b.b.a.a.a.b #36	ENSGT00940000157246 #37	ENSGT00940000161678	ENSGT00940000160466	ENSGT00390000013811	ENSGT00940000157924	ENSGT00940000155438.b
Long-tailed chinchilla	MODERN SPECIES	231	COPE (ENSCLAG00000003621) #7	DDX49 (ENSCLAG00000012844) #8	HOMER3 (ENSCLAG00000011599) #9	SUGP2 (ENSCLAG00000011375) #10	ARMC6 (ENSCLAG00000008215) #11	SLC25A42 (ENSCLAG00000008004) #12	TMEM161A (ENSCLAG00000007578) #13	MEF2B (ENSCLAG00000007377) #14	BORCS8 (ENSCLAG00000004959) #15	RFXANK (ENSCLAG00000004632) #16	NR2C2AP (ENSCLAG00000004378) #17	NCAN (ENSCLAG00000004140) #18	HAPLN4 (ENSCLAG00000003955) #19	TM6SF2 (ENSCLAG00000003633) #20	SUGP1 (ENSCLAG00000003512) #21	MAU2 (ENSCLAG00000006535) #22	GATAD2A (ENSCLAG00000010160) #23	TSSK6 (ENSCLAG00000018107) #24	NDUFA13 (ENSCLAG00000016915) #25	YJEFN3 (ENSCLAG00000016158) #26	CILP2 (ENSCLAG00000015928) #27	LPAR2 (ENSCLAG00000016969) #28	GMIP (ENSCLAG00000008010) #29	ATP13A1 (ENSCLAG00000009549) #30	ENSCLAG00000007428 #31	ENSCLAG00000007229 #32	DDX11 (ENSCLAG00000007090) #33	ENSCLAG00000006498 #34	ENSCLAG00000006263 #35	TPM4 (ENSCLAG00000006213) #36	RAB8A (ENSCLAG00000006073) #37
Degu	MODERN SPECIES	323	COPE (ENSODEG00000011547) #7	DDX49 (ENSODEG00000011203) #8	HOMER3 (ENSODEG00000014870) #9	SUGP2 (ENSODEG00000012058) #10	ARMC6 (ENSODEG00000012613) #11	SLC25A42 (ENSODEG00000012168) #12	TMEM161A (ENSODEG00000012343) #13	MEF2B (ENSODEG00000012357) #14	BORCS8 (ENSODEG00000013003) #15	RFXANK (ENSODEG00000013006) #16	NR2C2AP (ENSODEG00000011486) #17	NCAN (ENSODEG00000011699) #18	HAPLN4 (ENSODEG00000011689) #19	TM6SF2 (ENSODEG00000010936) #20	SUGP1 (ENSODEG00000011538) #21	MAU2 (ENSODEG00000012887) #22	GATAD2A (ENSODEG00000013506) #23	TSSK6 (ENSODEG00000020032) #24	NDUFA13 (ENSODEG00000013435) #25	YJEFN3 (ENSODEG00000011107) #26	CILP2 (ENSODEG00000010764) #27	LPAR2 (ENSODEG00000010920) #28	GMIP (ENSODEG00000010205) #29	ATP13A1 (ENSODEG00000010691) #30	ENSODEG00000019897	ENSODEG00000011452	ENSODEG00000010301	ENSODEG00000011437
Guinea pig	MODERN SPECIES	72	CERS1 (ENSCPOG00000033783)	COPE (ENSCPOG00000013624) #7	DDX49 (ENSCPOG00000013626) #8	HOMER3 (ENSCPOG00000004565) #9	SUGP2 (ENSCPOG00000006372) #10	ARMC6 (ENSCPOG00000006374) #11	SLC25A42 (ENSCPOG00000013086) #12	TMEM161A (ENSCPOG00000013640) #13	MEF2B (ENSCPOG00000032781) #14	BORCS8 (ENSCPOG00000036178) #15	RFXANK (ENSCPOG00000003121) #16	NR2C2AP (ENSCPOG00000032927) #17	HAPLN4 (ENSCPOG00000023683) #19	TM6SF2 (ENSCPOG00000022916) #20	SUGP1 (ENSCPOG00000007797) #21	MAU2 (ENSCPOG00000003755) #22	GATAD2A (ENSCPOG00000015396) #23	TSSK6 (ENSCPOG00000024320) #24	NDUFA13 (ENSCPOG00000019995) #25	YJEFN3 (ENSCPOG00000023842) #26	CILP2 (ENSCPOG00000007219) #27	LPAR2 (ENSCPOG00000012652) #28	GMIP (ENSCPOG00000011161) #29	ATP13A1 (ENSCPOG00000011167) #30	ENSCPOG00000022796
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000006789 #8	HOMER3 (ENSHGLG00000006851) #9	ARMC6 (ENSHGLG00000008147) #11	SLC25A42 (ENSHGLG00000008826) #12	TMEM161A (ENSHGLG00000009517) #13	ENSHGLG00000003123 #14	MEF2BNB (ENSHGLG00000047513) #15	RFXANK (ENSHGLG00000003396) #16	NR2C2AP (ENSHGLG00000033726) #17	NCAN (ENSHGLG00000034381) #18	HAPLN4 (ENSHGLG00000003896) #19	TM6SF2 (ENSHGLG00000004113) #20	ENSHGLG00000042474 #21	ENSHGLG00000039617 #10	ENSHGLG00000048186 #21	ENSHGLG00000049094 #22	GATAD2A (ENSHGLG00000003176) #23	TSSK6 (ENSHGLG00000020778) #24	NDUFA13 (ENSHGLG00000018628) #25	YJEFN3 (ENSHGLG00000019524) #26	CILP2 (ENSHGLG00000018931) #27	LPAR2 (ENSHGLG00000035704) #28	ENSHGLG00000013806 #29	ENSHGLG00000003184 ##31	ENSHGLG00000042271	ENSHGLG00000044603	ENSHGLG00000046812	ENSHGLG00000039559	ENSHGLG00000049921	ENSHGLG00000020580	ENSHGLG00000021231