Sauria DUPLICATION Sauria ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a #22 Archelosauria ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a #22 Cryptodira ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a #22 Testudinoidea DUPLICATION Testudinoidea DUPLICATION Testudinoidea ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a.b.b #22 Emydidae ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a.b.b #22 painted turtle MODERN SPECIES 1189 ENSCPBG00000021943 ##22 ENSCPBG00000021942 ##22 ENSCPBG00000021939 ##22 ENSCPBG00000021938 #22 ENSCPBG00000021937 ##22 Testudinoidea DUPLICATION Testudinoidea ANCESTRAL SPECIES 136 ENSGT00950000183007.b.i.b.a.a.b.a.b ##22 ENSGT00950000183007.b.i.b.b.b.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.a.a.b.a.a ##22 Testudinidae ANCESTRAL SPECIES 58 ENSGT01020000230438.B.b.b.a.j.d.a ENSGT01020000230438.B.b.b.a.j.c.b.b.a.b ENSGT01020000230438.B.b.b.a.i.a ENSGT01020000230438.A.a.a.a.d ENSGT01020000230438.A.a.a.b ENSGT01020000230438.A.a.a.a.c ENSGT00390000010337.A ENSGT00990000204431 ENSGT00950000182952.E ENSGT00950000182904.a.a.b ENSGT01030000235778 ENSGT00390000003568 ENSGT00950000183007.a.a.b.eb.o ##22 ENSGT00950000183007.b.i.b.a.a.b.a.b ##22 ENSGT00950000183007.b.i.b.b.b.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.a.a.b.a.a.a ##22 ENSGT00950000183007.b.i.b.a.a.a.a.b ##22 ENSGT00950000183007.b.i.b.b.b.b ##22 ENSGT00950000183007.b.i.b.b.a.b ##22 ENSGT00950000183007.a.a.b.db ##22 ENSGT00950000183007.b.i.a.a.b.b ##22 Abingdon island giant tortoise MODERN SPECIES 2239 ENSCABG00000001369 ENSCABG00000001372 ENSCABG00000001374 ENSCABG00000001378 ENSCABG00000001379 ENSCABG00000001381 ENSCABG00000001382 HAS1 (ENSCABG00000001384) ENSCABG00000001486 KCNN4 (ENSCABG00000001487) SMG9 (ENSCABG00000001502) ENSCABG00000001553 ##22 ENSCABG00000001555 ##22 ENSCABG00000001563 ##22 ENSCABG00000001564 ##22 ENSCABG00000001567 ##22 ENSCABG00000001569 ##22 ENSCABG00000001570 ##22 ENSCABG00000001572 ##22 ENSCABG00000001573 ##22 ENSCABG00000001575 ##22 ENSCABG00000001576 ##22 ENSCABG00000001577 ENSCABG00000001578 ENSCABG00000001580 ENSCABG00000001582 ENSCABG00000001585 Goode s thornscrub tortoise MODERN SPECIES 122 ENSGEVG00005015943 HAS1 (ENSGEVG00005015993) ENSGEVG00005016154 ENSGEVG00005016180 ENSGEVG00005016204 KCNN4 (ENSGEVG00005016227) ENSGEVG00005016256 SMG9 (ENSGEVG00005016301) ENSGEVG00005016557 ##22 ENSGEVG00005016570 ##22 ENSGEVG00005016603 ##22 ENSGEVG00005016628 ##22 ENSGEVG00005016635 ##22 ENSGEVG00005016647 ##22 ENSGEVG00005016664 ##22 ENSGEVG00005016674 ##22 ENSGEVG00005016680 ##22 ENSGEVG00005016693 ##22 ENSGEVG00005016734 ##22 ENSGEVG00005016796 ENSGEVG00005016818 ENSGEVG00005016881 ENSGEVG00005016912 ENSGEVG00005016942 ENSGEVG00005016958 ENSGEVG00005016973 ##22 ENSGEVG00005016995 ENSGEVG00005017031 ENSGEVG00005017046 LYPD3 (ENSGEVG00005017069) ENSGEVG00005017101 Emydidae ANCESTRAL SPECIES 206 ENSGT00950000183007.b.i.b.a.a.b.a.b ##22 ENSGT00950000183007.b.i.b.b.b.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.a.a.b.a.a ##22 painted turtle MODERN SPECIES 1482 ENSCPBG00000016826 ##22 ENSCPBG00000016822 ##22 ENSCPBG00000016821 ##22 ENSCPBG00000016818 ##22 Testudinoidea ANCESTRAL SPECIES 136 ENSGT00950000183007.b.i.b.a.a.b.a.b ##22 ENSGT00950000183007.b.i.b.b.b.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.a.a.b.a.a ##22 Testudinidae ANCESTRAL SPECIES 58 ENSGT01020000230438.B.b.b.a.j.c.b.b.a.a.a ENSGT01020000230438.B.b.b.a.j.c.b.b.b.b ENSGT01020000230438.B.b.b.a.j.d.a ENSGT01020000230438.B.b.b.a.j.c.b.b.a.b ENSGT01020000230438.B.b.b.a.i.a ENSGT01020000230438.A.a.a.a.d ENSGT01020000230438.A.a.a.b ENSGT01020000230438.A.a.a.a.c ENSGT00390000010337.A ENSGT00990000204431 ENSGT00950000182952.E ENSGT00950000182904.a.a.b ENSGT01030000235778 ENSGT00390000003568 ENSGT00950000183007.a.a.b.eb.o ##22 ENSGT00950000183007.b.i.b.a.a.b.a.b ##22 ENSGT00950000183007.b.i.b.b.b.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.a.a.b.a.a.a ##22 ENSGT00950000183007.b.i.b.a.a.a.a.b ##22 ENSGT00950000183007.b.i.b.b.b.b ##22 ENSGT00950000183007.b.i.b.b.a.b ##22 ENSGT00950000183007.a.a.b.db ##22 ENSGT00950000183007.b.i.a.a.b.b ##22 Abingdon island giant tortoise MODERN SPECIES 2239 ENSCABG00000001362 ENSCABG00000001365 ENSCABG00000001369 ENSCABG00000001372 ENSCABG00000001374 ENSCABG00000001378 ENSCABG00000001379 ENSCABG00000001381 ENSCABG00000001382 HAS1 (ENSCABG00000001384) ENSCABG00000001486 KCNN4 (ENSCABG00000001487) SMG9 (ENSCABG00000001502) ENSCABG00000001553 ##22 ENSCABG00000001555 ##22 ENSCABG00000001563 ##22 ENSCABG00000001564 ##22 ENSCABG00000001567 ##22 ENSCABG00000001569 ##22 ENSCABG00000001570 ##22 ENSCABG00000001572 ##22 ENSCABG00000001573 ##22 ENSCABG00000001575 ##22 ENSCABG00000001576 ##22 ENSCABG00000001577 ENSCABG00000001578 ENSCABG00000001580 ENSCABG00000001582 ENSCABG00000001585 Goode s thornscrub tortoise MODERN SPECIES 122 ENSGEVG00005015678 ENSGEVG00005015697 ENSGEVG00005015724 ENSGEVG00005015737 ENSGEVG00005015786 ENSGEVG00005015929 ENSGEVG00005015943 HAS1 (ENSGEVG00005015993) ENSGEVG00005016154 ENSGEVG00005016180 ENSGEVG00005016204 KCNN4 (ENSGEVG00005016227) ENSGEVG00005016256 SMG9 (ENSGEVG00005016301) ENSGEVG00005016557 ##22 ENSGEVG00005016570 ##22 ENSGEVG00005016603 ##22 ENSGEVG00005016628 ##22 ENSGEVG00005016635 ##22 ENSGEVG00005016647 ##22 ENSGEVG00005016664 ##22 ENSGEVG00005016674 ##22 ENSGEVG00005016680 ##22 ENSGEVG00005016693 ##22 ENSGEVG00005016734 ##22 ENSGEVG00005016796 ENSGEVG00005016818 ENSGEVG00005016881 ENSGEVG00005016912 ENSGEVG00005016942 ENSGEVG00005016958 Emydidae ANCESTRAL SPECIES 206 ENSGT00950000183007.b.i.b.a.a.b.a.b ##22 ENSGT00950000183007.b.i.b.b.b.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.a.a.b.a.a ##22 painted turtle DUPLICATION painted turtle MODERN SPECIES 1482 ENSCPBG00000016826 ##22 ENSCPBG00000016822 ##22 ENSCPBG00000016821 ##22 ENSCPBG00000016818 ##22 painted turtle MODERN SPECIES 2200 ENSCPBG00000006148 ##22 Testudinoidea DUPLICATION Testudinoidea DUPLICATION Testudinoidea ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a.a.a.a ##22 Emydidae DUPLICATION Emydidae ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a.a.a.a.a ##22 painted turtle DUPLICATION painted turtle DUPLICATION painted turtle MODERN SPECIES 1181 ENSCPBG00000021475 ENSCPBG00000021473 ##22 ENSCPBG00000021472 ##22 ENSCPBG00000021471 ##22 ENSCPBG00000021470 ##22 ENSCPBG00000021469 ENSCPBG00000021468 ##22 ENSCPBG00000021467 ##22 ENSCPBG00000021465 ##22 ENSCPBG00000021464 ##22 ENSCPBG00000021463 ##22 ENSCPBG00000021461 ##22 painted turtle MODERN SPECIES 1189 ENSCPBG00000021943 ##22 ENSCPBG00000021942 ##22 ENSCPBG00000021939 ##22 ENSCPBG00000021938 #22 ENSCPBG00000021937 ##22 painted turtle MODERN SPECIES 1512 ENSCPBG00000002066 ##22 Emydidae DUPLICATION Emydidae ANCESTRAL SPECIES 68 ENSGT00950000183007.b.i.b.b.b.b.a.a.a ##22 ENSGT00950000183007.b.i.b.a.a.a.a.a.b.a ##22 ENSGT00950000183007.a.a.b.eb.o ##22 ENSGT00390000003568 ENSGT00950000182904.a.a.b ENSGT00950000182952.E ENSGT00990000204431 ENSGT00390000010337.A ENSGT01020000230438.A.a.a.a.c ENSGT01020000230438.A.a.a.b ENSGT01020000230438.A.a.a.a.d ENSGT01020000230438.B.b.b.a.i.a ENSGT01020000230438.B.b.b.a.j.d.b ENSGT01020000230438.B.b.b.a.j.c.b.b.a.b ENSGT01020000230438.B.b.b.a.j.d.a ENSGT01020000230438.B.b.b.a.j.c.b.b.a.a.a ENSGT01020000230438.B.b.b.a.j.c.b.b.a.a.b Three-toed box turtle MODERN SPECIES 367 ENSTMTG00000004253 ##22 ENSTMTG00000004240 ##22 ENSTMTG00000004228 ##22 ENSTMTG00000004212 ##22 ENSTMTG00000004184 ##22 ENSTMTG00000004053 ##22 ENSTMTG00000003709 ##22 ENSTMTG00000003652 KCNN4 (ENSTMTG00000003493) ENSTMTG00000003441 ENSTMTG00000003423 ENSTMTG00000015739 ENSTMTG00000015734 ENSTMTG00000015714 ENSTMTG00000015675 ENSTMTG00000015668 ENSTMTG00000015658 painted turtle MODERN SPECIES 1181 ENSCPBG00000021475 ENSCPBG00000021473 ##22 ENSCPBG00000021472 ##22 ENSCPBG00000021471 ##22 ENSCPBG00000021470 ##22 ENSCPBG00000021469 ENSCPBG00000021468 ##22 ENSCPBG00000021467 ##22 ENSCPBG00000021465 ##22 ENSCPBG00000021464 ##22 ENSCPBG00000021463 ##22 ENSCPBG00000021461 ##22 Emydidae ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a.a.a.a.b.b ##22 Three-toed box turtle MODERN SPECIES 367 ENSTMTG00000004253 ##22 ENSTMTG00000004240 ##22 ENSTMTG00000004228 ##22 ENSTMTG00000004212 ##22 ENSTMTG00000004184 ##22 ENSTMTG00000004053 ##22 ENSTMTG00000003709 ##22 ENSTMTG00000003652 KCNN4 (ENSTMTG00000003493) ENSTMTG00000003441 ENSTMTG00000003423 ENSTMTG00000015739 ENSTMTG00000015734 ENSTMTG00000015714 ENSTMTG00000015675 ENSTMTG00000015668 ENSTMTG00000015658 ENSTMTG00000015643 Testudinoidea ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a.a.a.b ##22 Testudinidae ANCESTRAL SPECIES 58 ENSGT00950000183007.b.i.a.a.b.b ##22 ENSGT00950000183007.a.a.b.db ##22 ENSGT00950000183007.b.i.b.b.a.b ##22 ENSGT00950000183007.b.i.b.b.b.b ##22 ENSGT00950000183007.b.i.b.a.a.a.a.b ##22 ENSGT00950000183007.b.i.b.a.a.a.b.a.a.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.a ##22 ENSGT00950000183007.b.i.b.b.b.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.b ##22 ENSGT00950000183007.a.a.b.eb.o ##22 ENSGT00390000003568 ENSGT01030000235778 ENSGT00950000182904.a.a.b ENSGT00950000182952.E ENSGT00990000204431 ENSGT00390000010337.A ENSGT01020000230438.A.a.a.a.c ENSGT01020000230438.A.a.a.b ENSGT01020000230438.A.a.a.a.d ENSGT01020000230438.B.b.b.a.i.a Goode s thornscrub tortoise MODERN SPECIES 122 ENSGEVG00005017031 ENSGEVG00005016995 ENSGEVG00005016973 ##22 ENSGEVG00005016958 ENSGEVG00005016942 ENSGEVG00005016912 ENSGEVG00005016881 ENSGEVG00005016818 ENSGEVG00005016796 ENSGEVG00005016734 ##22 ENSGEVG00005016693 ##22 ENSGEVG00005016680 ##22 ENSGEVG00005016674 ##22 ENSGEVG00005016664 ##22 ENSGEVG00005016647 ##22 ENSGEVG00005016635 ##22 ENSGEVG00005016628 ##22 ENSGEVG00005016603 ##22 ENSGEVG00005016570 ##22 ENSGEVG00005016557 ##22 SMG9 (ENSGEVG00005016301) ENSGEVG00005016256 KCNN4 (ENSGEVG00005016227) ENSGEVG00005016204 ENSGEVG00005016180 ENSGEVG00005016154 HAS1 (ENSGEVG00005015993) ENSGEVG00005015943 ENSGEVG00005015929 ENSGEVG00005015786 ENSGEVG00005015737 Abingdon island giant tortoise MODERN SPECIES 2239 ENSCABG00000001585 ENSCABG00000001582 ENSCABG00000001580 ENSCABG00000001578 ENSCABG00000001577 ENSCABG00000001576 ##22 ENSCABG00000001575 ##22 ENSCABG00000001573 ##22 ENSCABG00000001572 ##22 ENSCABG00000001570 ##22 ENSCABG00000001569 ##22 ENSCABG00000001567 ##22 ENSCABG00000001564 ##22 ENSCABG00000001563 ##22 ENSCABG00000001555 ##22 ENSCABG00000001553 ##22 SMG9 (ENSCABG00000001502) KCNN4 (ENSCABG00000001487) ENSCABG00000001486 HAS1 (ENSCABG00000001384) ENSCABG00000001382 ENSCABG00000001381 ENSCABG00000001379 ENSCABG00000001378 ENSCABG00000001374 Emydidae ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a.a.a.b ##22 painted turtle MODERN SPECIES 1189 ENSCPBG00000021937 ##22 ENSCPBG00000021938 #22 ENSCPBG00000021939 ##22 ENSCPBG00000021942 ##22 ENSCPBG00000021943 ##22 Testudinoidea DUPLICATION Testudinoidea DUPLICATION Testudinoidea ANCESTRAL SPECIES 136 ENSGT00950000183007.b.i.b.a.a.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.a ##22 ENSGT00950000183007.b.i.b.b.b.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.b ##22 Testudinidae DUPLICATION Testudinidae ANCESTRAL SPECIES 58 ENSGT00950000183007.b.i.a.a.b.b ##22 ENSGT00950000183007.a.a.b.db ##22 ENSGT00950000183007.b.i.b.b.a.b ##22 ENSGT00950000183007.b.i.b.b.b.b ##22 ENSGT00950000183007.b.i.b.a.a.a.a.b ##22 ENSGT00950000183007.b.i.b.a.a.a.b.a.a.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.a ##22 ENSGT00950000183007.b.i.b.b.b.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.b ##22 ENSGT00950000183007.a.a.b.eb.o ##22 ENSGT00390000003568 ENSGT01030000235778 ENSGT00950000182904.a.a.b ENSGT00950000182952.E ENSGT00990000204431 ENSGT00390000010337.A ENSGT01020000230438.A.a.a.a.c ENSGT01020000230438.A.a.a.b ENSGT01020000230438.A.a.a.a.d ENSGT01020000230438.B.b.b.a.i.a ENSGT01020000230438.B.b.b.a.j.c.b.b.a.b Goode s thornscrub tortoise DUPLICATION Goode s thornscrub tortoise MODERN SPECIES 122 ENSGEVG00005017110 ENSGEVG00005017101 LYPD3 (ENSGEVG00005017069) ENSGEVG00005017046 ENSGEVG00005017031 ENSGEVG00005016995 ENSGEVG00005016973 ##22 ENSGEVG00005016958 ENSGEVG00005016942 ENSGEVG00005016912 ENSGEVG00005016881 ENSGEVG00005016818 ENSGEVG00005016796 ENSGEVG00005016734 ##22 ENSGEVG00005016693 ##22 ENSGEVG00005016680 ##22 ENSGEVG00005016674 ##22 ENSGEVG00005016664 ##22 ENSGEVG00005016647 ##22 ENSGEVG00005016635 ##22 ENSGEVG00005016628 ##22 ENSGEVG00005016603 ##22 ENSGEVG00005016570 ##22 ENSGEVG00005016557 ##22 SMG9 (ENSGEVG00005016301) ENSGEVG00005016256 KCNN4 (ENSGEVG00005016227) ENSGEVG00005016204 ENSGEVG00005016180 ENSGEVG00005016154 HAS1 (ENSGEVG00005015993) Goode s thornscrub tortoise MODERN SPECIES 122 ENSGEVG00005016995 ENSGEVG00005016973 ##22 ENSGEVG00005016958 ENSGEVG00005016942 ENSGEVG00005016912 ENSGEVG00005016881 ENSGEVG00005016818 ENSGEVG00005016796 ENSGEVG00005016734 ##22 ENSGEVG00005016693 ##22 ENSGEVG00005016680 ##22 ENSGEVG00005016674 ##22 ENSGEVG00005016664 ##22 ENSGEVG00005016647 ##22 ENSGEVG00005016635 ##22 ENSGEVG00005016628 ##22 ENSGEVG00005016603 ##22 ENSGEVG00005016570 ##22 ENSGEVG00005016557 ##22 SMG9 (ENSGEVG00005016301) ENSGEVG00005016256 KCNN4 (ENSGEVG00005016227) ENSGEVG00005016204 ENSGEVG00005016180 ENSGEVG00005016154 HAS1 (ENSGEVG00005015993) ENSGEVG00005015943 ENSGEVG00005015929 ENSGEVG00005015786 ENSGEVG00005015737 ENSGEVG00005015724 Abingdon island giant tortoise MODERN SPECIES 2239 ENSCABG00000001585 ENSCABG00000001582 ENSCABG00000001580 ENSCABG00000001578 ENSCABG00000001577 ENSCABG00000001576 ##22 ENSCABG00000001575 ##22 ENSCABG00000001573 ##22 ENSCABG00000001572 ##22 ENSCABG00000001570 ##22 ENSCABG00000001569 ##22 ENSCABG00000001567 ##22 ENSCABG00000001564 ##22 ENSCABG00000001563 ##22 ENSCABG00000001555 ##22 ENSCABG00000001553 ##22 SMG9 (ENSCABG00000001502) KCNN4 (ENSCABG00000001487) ENSCABG00000001486 HAS1 (ENSCABG00000001384) ENSCABG00000001382 ENSCABG00000001381 ENSCABG00000001379 ENSCABG00000001378 ENSCABG00000001374 ENSCABG00000001372 Testudinidae ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a.a.b.a.a.b ##22 Abingdon island giant tortoise MODERN SPECIES 2239 ENSCABG00000001585 ENSCABG00000001582 ENSCABG00000001580 ENSCABG00000001578 ENSCABG00000001577 ENSCABG00000001576 ##22 ENSCABG00000001575 ##22 ENSCABG00000001573 ##22 ENSCABG00000001572 ##22 ENSCABG00000001570 ##22 ENSCABG00000001569 ##22 ENSCABG00000001567 ##22 ENSCABG00000001564 ##22 ENSCABG00000001563 ##22 ENSCABG00000001555 ##22 ENSCABG00000001553 ##22 SMG9 (ENSCABG00000001502) KCNN4 (ENSCABG00000001487) ENSCABG00000001486 HAS1 (ENSCABG00000001384) ENSCABG00000001382 ENSCABG00000001381 ENSCABG00000001379 ENSCABG00000001378 ENSCABG00000001374 ENSCABG00000001372 ENSCABG00000001369 ENSCABG00000001365 Emydidae ANCESTRAL SPECIES 206 ENSGT00950000183007.b.i.b.a.a.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.a ##22 ENSGT00950000183007.b.i.b.b.b.a ##22 ENSGT00950000183007.b.i.b.a.a.b.a.b ##22 Three-toed box turtle MODERN SPECIES 367 ENSTMTG00000004253 ##22 ENSTMTG00000004240 ##22 ENSTMTG00000004228 ##22 ENSTMTG00000004212 ##22 ENSTMTG00000004184 ##22 ENSTMTG00000004053 ##22 ENSTMTG00000003709 ##22 ENSTMTG00000003652 KCNN4 (ENSTMTG00000003493) ENSTMTG00000003441 ENSTMTG00000003423 ENSTMTG00000015739 ENSTMTG00000015734 ENSTMTG00000015714 ENSTMTG00000015675 ENSTMTG00000015668 ENSTMTG00000015658 ENSTMTG00000015643 ENSTMTG00000015631 ENSTMTG00000015616 ENSTMTG00000015607 painted turtle MODERN SPECIES 1482 ENSCPBG00000016818 ##22 ENSCPBG00000016821 ##22 ENSCPBG00000016822 ##22 ENSCPBG00000016826 ##22 Testudinoidea ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a.a.b.a.b ##22 Emydidae ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a.a.b.a.b ##22 painted turtle MODERN SPECIES 1870 ENSCPBG00000010054 ##22 Testudinoidea ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a.a.b.b ##22 Emydidae ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.a.a.b.b ##22 painted turtle MODERN SPECIES 1181 ENSCPBG00000021475 ENSCPBG00000021473 ##22 ENSCPBG00000021472 ##22 ENSCPBG00000021471 ##22 ENSCPBG00000021470 ##22 ENSCPBG00000021469 ENSCPBG00000021468 ##22 ENSCPBG00000021467 ##22 ENSCPBG00000021465 ##22 ENSCPBG00000021464 ##22 ENSCPBG00000021463 ##22 ENSCPBG00000021461 ##22 Sauria ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b ##22 Archelosauria DUPLICATION Archelosauria ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.a ##22 Cryptodira ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.a ##22 Testudinoidea DUPLICATION Testudinoidea ANCESTRAL SPECIES 383 ENSGT00950000183007.b.i.b.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.b.a.b ##22 Testudinidae ANCESTRAL SPECIES 350 ENSGT00950000183007.b.i.b.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.b.a.b ##22 Abingdon island giant tortoise MODERN SPECIES 1880 ENSCABG00000023057 ENSCABG00000023056 ##22 ENSCABG00000023055 ##22 ENSCABG00000023054 ##22 CTU1 (ENSCABG00000023053) ENSCABG00000023052 ENSCABG00000023051 ENSCABG00000023050 ENSCABG00000023049 ENSCABG00000023048 MAG (ENSCABG00000023047) LSR (ENSCABG00000023046) GAPDHS (ENSCABG00000023045) TMEM147 (ENSCABG00000023044) ATP4A (ENSCABG00000023043) ENSCABG00000023042 ENSCABG00000023041 Goode s thornscrub tortoise MODERN SPECIES 122 ENSGEVG00005015786 ENSGEVG00005015929 ENSGEVG00005015943 HAS1 (ENSGEVG00005015993) ENSGEVG00005016154 ENSGEVG00005016180 ENSGEVG00005016204 KCNN4 (ENSGEVG00005016227) ENSGEVG00005016256 SMG9 (ENSGEVG00005016301) ENSGEVG00005016557 ##22 ENSGEVG00005016570 ##22 ENSGEVG00005016603 ##22 ENSGEVG00005016628 ##22 ENSGEVG00005016635 ##22 ENSGEVG00005016647 ##22 ENSGEVG00005016664 ##22 ENSGEVG00005016674 ##22 ENSGEVG00005016680 ##22 ENSGEVG00005016693 ##22 ENSGEVG00005016734 ##22 ENSGEVG00005016796 ENSGEVG00005016818 ENSGEVG00005016881 ENSGEVG00005016912 ENSGEVG00005016942 ENSGEVG00005016958 ENSGEVG00005016973 ##22 ENSGEVG00005016995 ENSGEVG00005017031 ENSGEVG00005017046 Emydidae ANCESTRAL SPECIES 446 ENSGT00950000183007.b.i.b.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.b.a.b ##22 painted turtle MODERN SPECIES 1367 ENSCPBG00000006686 ##22 ENSCPBG00000006680 ##22 ENSCPBG00000006671 ##22 ENSCPBG00000006664 ##22 Testudinoidea ANCESTRAL SPECIES 383 ENSGT00950000183007.b.i.b.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.b.a.b ##22 Emydidae ANCESTRAL SPECIES 446 ENSGT00950000183007.b.i.b.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.b.a.b ##22 painted turtle MODERN SPECIES 1367 ENSCPBG00000006686 ##22 ENSCPBG00000006680 ##22 ENSCPBG00000006671 ##22 ENSCPBG00000006664 ##22 Testudinidae ANCESTRAL SPECIES 350 ENSGT00950000183007.b.i.b.a.b.a.a ##22 ENSGT00950000183007.b.i.b.a.b.a.b ##22 Abingdon island giant tortoise MODERN SPECIES 1880 ENSCABG00000023057 ENSCABG00000023056 ##22 ENSCABG00000023055 ##22 ENSCABG00000023054 ##22 CTU1 (ENSCABG00000023053) ENSCABG00000023052 ENSCABG00000023051 ENSCABG00000023050 ENSCABG00000023049 ENSCABG00000023048 MAG (ENSCABG00000023047) LSR (ENSCABG00000023046) GAPDHS (ENSCABG00000023045) TMEM147 (ENSCABG00000023044) ATP4A (ENSCABG00000023043) ENSCABG00000023042 ENSCABG00000023041 ENSCABG00000023040 Archosauria ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.a ##22 Australian saltwater crocodile MODERN SPECIES 60 ENSCPRG00005011396 MAP4K3 (ENSCPRG00005011349) ENSCPRG00005011329 SOS1 (ENSCPRG00005011321) ARHGEF33 (ENSCPRG00005011270) MORN2 (ENSCPRG00005011260) DHX57 (ENSCPRG00005011246) ENSCPRG00005011241 GEMIN6 (ENSCPRG00005011238) ENSCPRG00005011225 GALM (ENSCPRG00005011218) HNRNPLL (ENSCPRG00005011215) SLC8A1 (ENSCPRG00005011210) MRPS5 (ENSCPRG00005011193) MAL (ENSCPRG00005011171) ENSCPRG00005011164 ##22 EIF4A3 (ENSCPRG00005011154) NINL (ENSCPRG00005011133) GINS1 (ENSCPRG00005011130) ABHD12 (ENSCPRG00005011125) PYGB (ENSCPRG00005009386) ENSCPRG00005009186 ENSCPRG00005009181 TTBK1 (ENSCPRG00005009150) ENSCPRG00005008992 SRF (ENSCPRG00005008915) PTK7 (ENSCPRG00005008882) ENSCPRG00005008848 MRPL2 (ENSCPRG00005008844) ENSCPRG00005008838 ENSCPRG00005008801 Archelosauria ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.b ##22 Cryptodira DUPLICATION Cryptodira ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.b.a ##22 Testudinoidea DUPLICATION Testudinoidea ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.b.a.a ##22 Emydidae DUPLICATION Emydidae ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.b.a.a.a ##22 painted turtle DUPLICATION painted turtle MODERN SPECIES 2285 ENSCPBG00000017286 ##22 painted turtle MODERN SPECIES 1719 ENSCPBG00000002666 ##22 Three-toed box turtle MODERN SPECIES 180 ENSTMTG00000018996 ##22 Emydidae ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.b.a.a.b ##22 painted turtle MODERN SPECIES 1927 ENSCPBG00000011454 ##22 Testudinidae ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.b.a.a ##22 Goode s thornscrub tortoise DUPLICATION Goode s thornscrub tortoise MODERN SPECIES 122 ATP4A (ENSGEVG00005013696) TMEM147 (ENSGEVG00005013656) GAPDHS (ENSGEVG00005013607) LSR (ENSGEVG00005013475) MAG (ENSGEVG00005012792) ENSGEVG00005012658 ENSGEVG00005012572 TYROBP (ENSGEVG00005012543) ENSGEVG00005012514 CTU1 (ENSGEVG00005012497) ENSGEVG00005020225 ##22 ENSGEVG00005020223 ##22 ENSGEVG00005020185 ##22 ENSGEVG00005020167 ENSGEVG00005020163 ##22 ENSGEVG00005020158 ##22 ENSGEVG00005020155 ENSGEVG00005020150 ##22 ENSGEVG00005020146 ENSGEVG00005020138 ENSGEVG00005020131 ENSGEVG00005020100 ENSGEVG00005020084 ENSGEVG00005020047 ENSGEVG00005020027 ENSGEVG00005019919 ENSGEVG00005019833 ENSGEVG00005019708 ENSGEVG00005019687 ENSGEVG00005019374 ENSGEVG00005019185 Goode s thornscrub tortoise MODERN SPECIES 122 ENSGEVG00005019833 ENSGEVG00005019919 ENSGEVG00005020027 ENSGEVG00005020047 ENSGEVG00005020084 ENSGEVG00005020100 ENSGEVG00005020131 ENSGEVG00005020138 ENSGEVG00005020146 ENSGEVG00005020150 ##22 ENSGEVG00005020155 ENSGEVG00005020158 ##22 ENSGEVG00005020163 ##22 ENSGEVG00005020167 ENSGEVG00005020185 ##22 ENSGEVG00005020223 ##22 ENSGEVG00005020225 ##22 CTU1 (ENSGEVG00005012497) ENSGEVG00005012514 TYROBP (ENSGEVG00005012543) ENSGEVG00005012572 ENSGEVG00005012658 MAG (ENSGEVG00005012792) LSR (ENSGEVG00005013475) GAPDHS (ENSGEVG00005013607) TMEM147 (ENSGEVG00005013656) ATP4A (ENSGEVG00005013696) ENSGEVG00005013999 ENSGEVG00005014017 ENSGEVG00005014078 USF2 (ENSGEVG00005014152) Testudinoidea ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.b.a.b ##22 Emydidae ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.b.a.b ##22 Three-toed box turtle MODERN SPECIES 367 ENSTMTG00000004253 ##22 ENSTMTG00000004240 ##22 ENSTMTG00000004228 ##22 ENSTMTG00000004212 ##22 ENSTMTG00000004184 ##22 ENSTMTG00000004053 ##22 ENSTMTG00000003709 ##22 ENSTMTG00000003652 KCNN4 (ENSTMTG00000003493) ENSTMTG00000003441 ENSTMTG00000003423 ENSTMTG00000015739 ENSTMTG00000015734 ENSTMTG00000015714 ENSTMTG00000015675 ENSTMTG00000015668 ENSTMTG00000015658 ENSTMTG00000015643 ENSTMTG00000015631 painted turtle MODERN SPECIES 1189 ENSCPBG00000021943 ##22 ENSCPBG00000021942 ##22 ENSCPBG00000021939 ##22 ENSCPBG00000021938 #22 ENSCPBG00000021937 ##22 Chinese turtle DUPLICATION Chinese turtle MODERN SPECIES 237 ENSPSIG00000009029 ##22 ENSPSIG00000000001 ##22 ENSPSIG00000008699 ##22 ENSPSIG00000001637 ##22 ENSPSIG00000008492 ##22 SMG9 (ENSPSIG00000008334) ENSPSIG00000008294 ENSPSIG00000008071 ENSPSIG00000008050 ENSPSIG00000001629 HAS1 (ENSPSIG00000006966) ENSPSIG00000006663 Chinese turtle MODERN SPECIES 237 ENSPSIG00000006663 HAS1 (ENSPSIG00000006966) ENSPSIG00000001629 ENSPSIG00000008050 ENSPSIG00000008071 ENSPSIG00000008294 SMG9 (ENSPSIG00000008334) ENSPSIG00000008492 ##22 ENSPSIG00000001637 ##22 ENSPSIG00000008699 ##22 ENSPSIG00000000001 ##22 ENSPSIG00000009029 ##22 Cryptodira ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.b.b ##22 Testudinoidea ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.b.b ##22 Testudinidae ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b.b.b ##22 Goode s thornscrub tortoise MODERN SPECIES 122 ENSGEVG00005014078 ENSGEVG00005014017 ENSGEVG00005013999 ATP4A (ENSGEVG00005013696) TMEM147 (ENSGEVG00005013656) GAPDHS (ENSGEVG00005013607) LSR (ENSGEVG00005013475) MAG (ENSGEVG00005012792) ENSGEVG00005012658 ENSGEVG00005012572 TYROBP (ENSGEVG00005012543) ENSGEVG00005012514 CTU1 (ENSGEVG00005012497) ENSGEVG00005020225 ##22 ENSGEVG00005020223 ##22 ENSGEVG00005020185 ##22 ENSGEVG00005020167 ENSGEVG00005020163 ##22 ENSGEVG00005020158 ##22 ENSGEVG00005020155 ENSGEVG00005020150 ##22 ENSGEVG00005020146 ENSGEVG00005020138 ENSGEVG00005020131 ENSGEVG00005020100 ENSGEVG00005020084 ENSGEVG00005020047 ENSGEVG00005020027 ENSGEVG00005019919 ENSGEVG00005019833 ENSGEVG00005019708 Lepidosauria ANCESTRAL SPECIES ENSGT00950000183007.b.i.b.a.b ##22 tuatara DUPLICATION tuatara MODERN SPECIES 1580 RABAC1 (ENSSPUG00000016746) ATP1A3 (ENSSPUG00000016698) GRIK5 (ENSSPUG00000016676) POU2F2 (ENSSPUG00000016579) DEDD2 (ENSSPUG00000016572) ZNF526 (ENSSPUG00000016569) GSK3A (ENSSPUG00000016559) ERF (ENSSPUG00000016555) ENSSPUG00000016548 ENSSPUG00000016538 PAFAH1B3 (ENSSPUG00000016531) ENSSPUG00000016520 ENSSPUG00000016510 ENSSPUG00000016498 ENSSPUG00000016293 ENSSPUG00000016251 ##22 ENSSPUG00000016105 RPS19 (ENSSPUG00000016051) CADM4 (ENSSPUG00000015976) ENSSPUG00000015950 ZNF576 (ENSSPUG00000015942) ENSSPUG00000015934 ##22 ENSSPUG00000015920 ##22 tuatara MODERN SPECIES 50 ETFB (ENSSPUG00000016350) ENSSPUG00000016344 ENSSPUG00000016337 ENSSPUG00000016331 ENSSPUG00000016320 ENSSPUG00000016311 ENSSPUG00000016307 PPP2R1A (ENSSPUG00000016300) ENSSPUG00000016290 ENSSPUG00000016285 ENSSPUG00000016274 ENSSPUG00000016264 KCNN4 (ENSSPUG00000016247) SMG9 (ENSSPUG00000016223) ENSSPUG00000016218 ENSSPUG00000016215 ##22 ENSSPUG00000016212 ##22 ENSSPUG00000016207 ENSSPUG00000016190 ENSSPUG00000016179 ENSSPUG00000016175 ENSSPUG00000016168 ENSSPUG00000016161 ENSSPUG00000016155 ETHE1 (ENSSPUG00000015962) XRCC1 (ENSSPUG00000015888)