Euteleostomi	ANCESTRAL SPECIES	571															ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26
Actinopterygii	ANCESTRAL SPECIES	256						ENSGT00940000156160	ENSGT00390000000862	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00390000005581.a	ENSGT00520000055666.b	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180.e ##23	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26
Neopterygii	ANCESTRAL SPECIES	42	ENSGT00390000007295	ENSGT00680000100065	ENSGT00940000153744.A #10	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813 #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000005581.a	ENSGT00520000055666.b	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180.e ##23	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000167133	ENSGT00940000160544	ENSGT01090000259987.a.a.a	ENSGT00390000015709	ENSGT00940000155992	ENSGT00530000063273.b.b	ENSGT00720000108822	ENSGT00940000153969.b	ENSGT00940000165503	ENSGT00940000161996
Osteoglossocephalai	ANCESTRAL SPECIES	18	ENSGT00390000015143	ENSGT01040000240966	ENSGT00390000012446	ENSGT00680000100065	ENSGT00940000153744.A #10	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000005581.a	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180.e ##23	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000167133	ENSGT00940000160544	ENSGT01090000259987.a.a.a	ENSGT00390000015709	ENSGT00940000155992.d	ENSGT00720000108822	ENSGT00940000153969.b	ENSGT00940000165503	ENSGT00940000166532	ENSGT00940000157440
Clupeocephala	ANCESTRAL SPECIES	129	ENSGT00390000015143	ENSGT00390000007295	ENSGT00390000012446	ENSGT00680000100065	ENSGT00940000153744.A #10	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000167133	ENSGT00940000160544	ENSGT01090000259987.a.a.a	ENSGT00940000155992.c.a	ENSGT00530000063273.b.a.a	ENSGT00940000178952	ENSGT00720000108822
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	ANCESTRAL SPECIES	153	ENSGT00390000012446	ENSGT01020000230587	ENSGT00390000007295	ENSGT00680000100065	ENSGT00940000153744.A #10	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000167133	ENSGT00940000160544	ENSGT01090000259987.a.a.a.p	ENSGT00940000155992.c.a	ENSGT00530000063273.b.a.a	ENSGT00940000178952	ENSGT00720000108822	ENSGT00940000153969.b	ENSGT00940000165503	ENSGT00940000166532	ENSGT00940000157440.m.a
Acanthomorphata	ANCESTRAL SPECIES	88	ENSGT00390000012446	ENSGT00390000007295	ENSGT00390000017045	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00950000183184.a.a.a #37	ENSGT00940000154360.A.b.a	ENSGT00940000162768.B.a
Euacanthomorphacea	ANCESTRAL SPECIES	15	ENSGT00390000012446	ENSGT00390000007295	ENSGT00390000017045	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00950000183184.a.a.a #37	ENSGT00940000154360.A.b.a
Percomorphaceae	ANCESTRAL SPECIES	29	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00950000183184.a.a.a #37	ENSGT00940000154360.A.b.a
Percomorphaceae_B	ANCESTRAL SPECIES	17	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Carangaria	ANCESTRAL SPECIES	12	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Pleuronectoidei	ANCESTRAL SPECIES	9	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765.l #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00940000182362	ENSGT00950000183184.a.a.a #37
Turbot	MODERN SPECIES	5	ENSSMAG00000030365	ENSSMAG00000016431 #8	ENSSMAG00000016384 #9	osgepl1 (ENSSMAG00000016314) #10	ENSSMAG00000016306 #11	adat3 (ENSSMAG00000016304) #12	ormdl1 (ENSSMAG00000016290) #13	pms1 (ENSSMAG00000016259) #14	mstnb (ENSSMAG00000016251) #15	ENSSMAG00000016238 #16	hibch (ENSSMAG00000016217) #17	LSS (ENSSMAG00000017301) #18	ENSSMAG00000017233 #19	YBEY (ENSSMAG00000017209) #20	USP37 (ENSSMAG00000017077) #21	CNOT9 (ENSSMAG00000017049) #22	PLCD4 (ENSSMAG00000017007) #23	ZNF142 (ENSSMAG00000016984) #24	bcs1l (ENSSMAG00000016978) #25	zgc:136333 (ENSSMAG00000016968) #26	TNS1 (ENSSMAG00000002630) #27	igfbp5b (ENSSMAG00000022148) #28	igfbp2b (ENSSMAG00000002850) #29	slc4a3 (ENSSMAG00000002874) #31	ENSSMAG00000002910 #32	gulp1a (ENSSMAG00000002959) #33	ENSSMAG00000003038 #34	ENSSMAG00000034020	ENSSMAG00000003063 #35	ENSSMAG00000033261 #36	ENSSMAG00000026149
Tongue sole	MODERN SPECIES	7	ENSCSEG00000016444 #8	fkbp7 (ENSCSEG00000016425) #9	ENSCSEG00000016419	osgepl1 (ENSCSEG00000016416) #10	alkbh6 (ENSCSEG00000016413) #11	adat3 (ENSCSEG00000016408) #12	ormdl1 (ENSCSEG00000016404) #13	ENSCSEG00000016396 #15	ENSCSEG00000016375 #14	ENSCSEG00000016370 #16	hibch (ENSCSEG00000016344) #17	lss (ENSCSEG00000016324) #18	ENSCSEG00000016295 #19	ybey (ENSCSEG00000016288) #20	usp37 (ENSCSEG00000016207) #21	cnot9 (ENSCSEG00000016169) #22	PLCD4 (ENSCSEG00000016126) #23	ENSCSEG00000016104 #24	ENSCSEG00000016097	ENSCSEG00000016080 #27	ENSCSEG00000016040 #27	ENSCSEG00000016032	itgav (ENSCSEG00000016012)	ENSCSEG00000016007	MYLK (ENSCSEG00000015990)	ENSCSEG00000015955	ENSCSEG00000015947	ENSCSEG00000015911	ENSCSEG00000015805	ENSCSEG00000015785	ENSCSEG00000015779
Carangaria_A	ANCESTRAL SPECIES	11	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Seriola	ANCESTRAL SPECIES	34	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Greater amberjack	MODERN SPECIES	21	ENSSDUG00000007339 #8	ENSSDUG00000007349 #8	fkbp7 (ENSSDUG00000007385) #9	osgepl1 (ENSSDUG00000007391) #10	alkbh6 (ENSSDUG00000007406) #11	adat3 (ENSSDUG00000007414) #12	ormdl1 (ENSSDUG00000007421) #13	pms1 (ENSSDUG00000007435) #14	mstnb (ENSSDUG00000007459) #15	ENSSDUG00000007475 #16	hibch (ENSSDUG00000007481) #17	lss (ENSSDUG00000007508) #18	MCM3AP (ENSSDUG00000007571) #19	ybey (ENSSDUG00000007610) #20	usp37 (ENSSDUG00000007623) #21	cnot9 (ENSSDUG00000007667) #22	PLCD4 (ENSSDUG00000007711) #23	ZNF142 (ENSSDUG00000007730) #24	bcs1l (ENSSDUG00000007742) #25	zgc:136333 (ENSSDUG00000007765) #26	TNS1 (ENSSDUG00000007852) #27	igfbp5b (ENSSDUG00000007969) #28	igfbp2b (ENSSDUG00000007987) #29	ENSSDUG00000007994 #30	slc4a3 (ENSSDUG00000008026) #31	COL5A2 (ENSSDUG00000008163) #32	gulp1a (ENSSDUG00000008263) #33	ENSSDUG00000008428 #34	ENSSDUG00000008445 #35	ENSSDUG00000008481	lrrc3 (ENSSDUG00000008494)
Yellowtail amberjack	MODERN SPECIES	3051	ENSSLDG00000015021 #7	ENSSLDG00000015084 #8	fkbp7 (ENSSLDG00000015200) #9	osgepl1 (ENSSLDG00000015220) #10	alkbh6 (ENSSLDG00000015256) #11	adat3 (ENSSLDG00000015266) #12	ormdl1 (ENSSLDG00000015274) #13	pms1 (ENSSLDG00000015291) #14	mstnb (ENSSLDG00000015315) #15	ENSSLDG00000015326 #16	hibch (ENSSLDG00000015336) #17	lss (ENSSLDG00000015382) #18	MCM3AP (ENSSLDG00000016147) #19	ybey (ENSSLDG00000019474) #20	usp37 (ENSSLDG00000019488) #21	cnot9 (ENSSLDG00000019516) #22	PLCD4 (ENSSLDG00000019540) #23	ZNF142 (ENSSLDG00000019564) #24	bcs1l (ENSSLDG00000019606) #25	zgc:136333 (ENSSLDG00000019620) #26	TNS1 (ENSSLDG00000019664) #27	ENSSLDG00000019911	igfbp5b (ENSSLDG00000019917) #28	igfbp2b (ENSSLDG00000019928) #29	slc4a3 (ENSSLDG00000019942) #31	ENSSLDG00000019989	gulp1a (ENSSLDG00000020054) #33	ENSSLDG00000020075 #34	ENSSLDG00000020088 #35	ENSSLDG00000020135 #36	ENSSLDG00000020139 #37
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	216	ENSLCAG00010001401 #7	ENSLCAG00010000783 #8	ENSLCAG00010000380 #9	osgepl1 (ENSLCAG00010000367) #10	alkbh6 (ENSLCAG00010000357) #11	adat3 (ENSLCAG00010000350) #12	ormdl1 (ENSLCAG00010000333) #13	pms1 (ENSLCAG00010000283) #14	mstnb (ENSLCAG00010022821) #15	ENSLCAG00010022812 #16	hibch (ENSLCAG00010022801) #17	lss (ENSLCAG00010022762) #18	ENSLCAG00010022745 #19	ybey (ENSLCAG00010022743) #20	usp37 (ENSLCAG00010022741) #21	cnot9 (ENSLCAG00010022735) #22	PLCD4 (ENSLCAG00010022517) #23	ENSLCAG00010022468 #24	ENSLCAG00010022467 #24	bcs1l (ENSLCAG00010022465) #25	zgc:136333 (ENSLCAG00010022461) #26	TNS1 (ENSLCAG00010022355) #27	igfbp5b (ENSLCAG00010022316) #28	igfbp2b (ENSLCAG00010022310) #29	ENSLCAG00010022307 #30	slc4a3 (ENSLCAG00010022227) #31
Barramundi perch	MODERN SPECIES	1799																cnot9 (ENSLCAG00010021784) #22
Anabantaria	ANCESTRAL SPECIES	14	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Anabantoidei	ANCESTRAL SPECIES	13	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Climbing perch	MODERN SPECIES	12	ENSATEG00000008730 #7	ENSATEG00000008815 #7	ENSATEG00000008833 #8	ENSATEG00000008852 #9	osgepl1 (ENSATEG00000008881) #10	ENSATEG00000008859 #11	adat3 (ENSATEG00000008909) #12	ormdl1 (ENSATEG00000008911) #13	pms1 (ENSATEG00000008961) #14	mstnb (ENSATEG00000008968) #15	ENSATEG00000008989 #16	hibch (ENSATEG00000008995) #17	ENSATEG00000009009 #18	ENSATEG00000009098 #20	USP37 (ENSATEG00000009106) #21	CNOT9 (ENSATEG00000009188) #22	PLCD4 (ENSATEG00000009217) #23	ZNF142 (ENSATEG00000009234) #24	bcs1l (ENSATEG00000009249) #25	zgc:136333 (ENSATEG00000009256) #26	TNS1 (ENSATEG00000009288) #27	igfbp5b (ENSATEG00000009460) #28	igfbp2b (ENSATEG00000009467) #29	ENSATEG00000027372 #30	slc4a3 (ENSATEG00000009496) #31	ENSATEG00000009545 #32	gulp1a (ENSATEG00000009652) #33	ENSATEG00000009708 #34	ENSATEG00000009722 #35	ENSATEG00000009777 #36	ENSATEG00000009800 #37
Siamese fighting fish	MODERN SPECIES	11	ENSBSLG00000011038	ENSBSLG00000011023	ENSBSLG00000011010	osgepl1 (ENSBSLG00000010975) #10	adat3 (ENSBSLG00000010966) #12	ormdl1 (ENSBSLG00000010956) #13	pms1 (ENSBSLG00000010729) #14	mstnb (ENSBSLG00000010624) #15	ENSBSLG00000010463 #16	ENSBSLG00000010461	hibch (ENSBSLG00000009802) #17	lss (ENSBSLG00000009140) #18	ENSBSLG00000008957 #19	ybey (ENSBSLG00000008603) #20	usp37 (ENSBSLG00000007926) #21	cnot9 (ENSBSLG00000007738) #22	PLCD4 (ENSBSLG00000006962) #23	maip1 (ENSBSLG00000006940)	maip1 (ENSBSLG00000006922)	maip1 (ENSBSLG00000006900)	tyw5 (ENSBSLG00000006858)	ENSBSLG00000006848	ENSBSLG00000006516	RAB17 (ENSBSLG00000006286)	MLPH (ENSBSLG00000005933)	ENSBSLG00000005925	COL6A3 (ENSBSLG00000005154)	cops8 (ENSBSLG00000004929)	ENSBSLG00000004877	ENSBSLG00000026090	ENSBSLG00000025939
Zig-zag eel	MODERN SPECIES	13	ENSMAMG00000010625 #8	ENSMAMG00000010685	ENSMAMG00000025028 #9	osgepl1 (ENSMAMG00000010694) #10	ENSMAMG00000010698 #11	adat3 (ENSMAMG00000010706) #12	ormdl1 (ENSMAMG00000010710) #13	pms1 (ENSMAMG00000010717) #14	mstnb (ENSMAMG00000010725) #15	ENSMAMG00000010733 #16	hibch (ENSMAMG00000010741) #17	LSS (ENSMAMG00000010753) #18	ENSMAMG00000010786 #19	YBEY (ENSMAMG00000010832) #20	USP37 (ENSMAMG00000010862) #21	CNOT9 (ENSMAMG00000011021) #22	PLCD4 (ENSMAMG00000011046) #23	ZNF142 (ENSMAMG00000011171) #24	bcs1l (ENSMAMG00000011182) #25	zgc:136333 (ENSMAMG00000011191) #26	TNS1 (ENSMAMG00000011244) #27	igfbp5b (ENSMAMG00000011353) #28	igfbp2b (ENSMAMG00000024703) #29	slc4a3 (ENSMAMG00000011375) #31	COL5A2 (ENSMAMG00000011468) #32	gulp1a (ENSMAMG00000011545) #33	ENSMAMG00000026701 #34	ENSMAMG00000028000 #35	FAM171B (ENSMAMG00000011601) #37	lrrc3 (ENSMAMG00000011617)	pcbp3 (ENSMAMG00000011620)
Eupercaria	ANCESTRAL SPECIES	25	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Eupecaria_A	ANCESTRAL SPECIES	24	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Ballan wrasse	MODERN SPECIES	55	lss (ENSLBEG00000028041) #18	hibch (ENSLBEG00000028083) #17	ENSLBEG00000028129 #16	mstnb (ENSLBEG00000028147) #15	pms1 (ENSLBEG00000028137) #14	ormdl1 (ENSLBEG00000028157) #13	adat3 (ENSLBEG00000028168) #12	alkbh6 (ENSLBEG00000028172) #11	osgepl1 (ENSLBEG00000028176) #10	fkbp7 (ENSLBEG00000028184) #9	ENSLBEG00000028193 #8	ENSLBEG00000000255 #8	MCM3AP (ENSLBEG00000000276) #19	ybey (ENSLBEG00000000362) #20	usp37 (ENSLBEG00000000389) #21	cnot9 (ENSLBEG00000000729) #22	PLCD4 (ENSLBEG00000000786) #23	ZNF142 (ENSLBEG00000000807) #24	bcs1l (ENSLBEG00000000875) #25	zgc:136333 (ENSLBEG00000000917) #26
Eupecaria_B	ANCESTRAL SPECIES	24	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37	ENSGT00940000154360.A.b.a
Eupecaria_C	ANCESTRAL SPECIES	24	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37	ENSGT00940000154360.A.b.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	24	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00950000183184.a.a.a #37	ENSGT00940000154360.A.b.a	ENSGT00940000162768.B.a
European seabass	MODERN SPECIES	5	ENSDLAG00005022435 #9	osgepl1 (ENSDLAG00005022441) #10	adat3 (ENSDLAG00005022449) #12	ENSDLAG00005022445 #11	ormdl1 (ENSDLAG00005027751) #13	pms1 (ENSDLAG00005022460) #14	mstnb (ENSDLAG00005022521) #15	ENSDLAG00005022536 #16	hibch (ENSDLAG00005022541) #17	LSS (ENSDLAG00005022621) #18	ENSDLAG00005022735	ENSDLAG00005022739	ENSDLAG00005022744 #19	YBEY (ENSDLAG00005034841) #20	USP37 (ENSDLAG00005022800) #21	CNOT9 (ENSDLAG00005022857) #22	PLCD4 (ENSDLAG00005022885) #23	ZNF142 (ENSDLAG00005023256) #24	zgc:136333 (ENSDLAG00005023265) #26	TNS1 (ENSDLAG00005023305) #27	igfbp5b (ENSDLAG00005024114) #28	igfbp2b (ENSDLAG00005024118) #29	slc4a3 (ENSDLAG00005024195) #31	ENSDLAG00005024788 #32	gulp1a (ENSDLAG00005004339) #33	ENSDLAG00005033365 #34	ENSDLAG00005004586 #35	ENSDLAG00005005708 #37	lrrc3 (ENSDLAG00005031007)	pcbp3 (ENSDLAG00005005870)	ENSDLAG00005006140
Large yellow croaker	MODERN SPECIES		ENSLCRG00005014720	hdac4 (ENSLCRG00005013772)	twist2 (ENSLCRG00005013760)	ENSLCRG00005013759	asb1 (ENSLCRG00005013758)	traf3ip1 (ENSLCRG00005013756)	ADARB1 (ENSLCRG00005013696)	ENSLCRG00005013693	ENSLCRG00005013688	ENSLCRG00005013687	zgc:162396 (ENSLCRG00005013685)	zgc:162780 (ENSLCRG00005013684)	ENSLCRG00005013683 #19	ybey (ENSLCRG00005013682) #20	usp37 (ENSLCRG00005013676) #21	cnot9 (ENSLCRG00005013674) #22	PLCD4 (ENSLCRG00005013664) #23	ZNF142 (ENSLCRG00005013660) #24	bcs1l (ENSLCRG00005013659) #25	CYP27A1 (ENSLCRG00005013658) #26	TNS1 (ENSLCRG00005012097) #27	igfbp5b (ENSLCRG00005012082) #28	igfbp2b (ENSLCRG00005012081) #29	slc4a3 (ENSLCRG00005009948) #31	COL5A2 (ENSLCRG00005007993) #32	gulp1a (ENSLCRG00005007966) #33	ENSLCRG00005007962 #34	ENSLCRG00005007405 #35	ENSLCRG00005007392 #37	lrrc3 (ENSLCRG00005007390)	pcbp3 (ENSLCRG00005007381)
Gilthead seabream	MODERN SPECIES	23	ENSSAUG00010009144 #7	ENSSAUG00010004954 #8	fkbp7 (ENSSAUG00010004880) #9	osgepl1 (ENSSAUG00010004873) #10	alkbh6 (ENSSAUG00010004870) #11	adat3 (ENSSAUG00010004867) #12	ormdl1 (ENSSAUG00010004864) #13	pms1 (ENSSAUG00010004800) #14	mstnb (ENSSAUG00010004791) #15	ENSSAUG00010004790 #16	hibch (ENSSAUG00010004770) #17	lss (ENSSAUG00010004683) #18	ENSSAUG00010004668 #19	ybey (ENSSAUG00010004664) #20	usp37 (ENSSAUG00010004648) #21	cnot9 (ENSSAUG00010004638) #22	PLCD4 (ENSSAUG00010004216) #23	ZNF142 (ENSSAUG00010004108) #24	bcs1l (ENSSAUG00010004068) #25	zgc:136333 (ENSSAUG00010015642) #26	TNS1 (ENSSAUG00010015615) #27	igfbp5b (ENSSAUG00010015605) #28	igfbp2b (ENSSAUG00010015599) #29	slc4a3 (ENSSAUG00010015089) #31	COL5A2 (ENSSAUG00010014375) #32	gulp1a (ENSSAUG00010014239) #33	ENSSAUG00010014232 #34	ENSSAUG00010014112 #35	ENSSAUG00010014107 #36	FAM171B (ENSSAUG00010014104) #37	lrrc3 (ENSSAUG00010014103)
Perciformes	ANCESTRAL SPECIES	23	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00950000183184.a.a.a #37	ENSGT00940000154360.A.b.a	ENSGT00940000162768.B.a
Perciformes_a	ANCESTRAL SPECIES	23	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00950000183184.a.a.a #37	ENSGT00940000154360.A.b.a	ENSGT00940000162768.B.a
Channel bull blenny	MODERN SPECIES	13	ENSCGOG00000021571 #7	ENSCGOG00000021597 #8	fkbp7 (ENSCGOG00000021818) #9	osgepl1 (ENSCGOG00000021820) #10	alkbh6 (ENSCGOG00000021822) #11	pms1 (ENSCGOG00000021826) #14	adat3 (ENSCGOG00000021904) #12	ormdl1 (ENSCGOG00000021905) #13	mstnb (ENSCGOG00000021916) #15	ENSCGOG00000021934 #16	hibch (ENSCGOG00000021938) #17	lss (ENSCGOG00000021990) #18	ENSCGOG00000022398 #19	ybey (ENSCGOG00000022413) #20	usp37 (ENSCGOG00000022416) #21	cnot9 (ENSCGOG00000022431) #22	PLCD4 (ENSCGOG00000022467) #23	ZNF142 (ENSCGOG00000023002) #24	bcs1l (ENSCGOG00000023004) #25	zgc:136333 (ENSCGOG00000023008) #26	TNS1 (ENSCGOG00000023029) #27	igfbp5b (ENSCGOG00000023194) #28	igfbp2b (ENSCGOG00000023204) #29	slc4a3 (ENSCGOG00000023208) #31	COL5A2 (ENSCGOG00000023213) #32	gulp1a (ENSCGOG00000023238) #33	ENSCGOG00000023244	ENSCGOG00000023247 #34	ENSCGOG00000023279 #35	ENSCGOG00000023443 #37	lrrc3 (ENSCGOG00000012897)
Pike perch	MODERN SPECIES	191	ENSSLUG00000019736	ENSSLUG00000018646	fkbp7 (ENSSLUG00000018593) #9	osgepl1 (ENSSLUG00000018585) #10	alkbh6 (ENSSLUG00000018581) #11	adat3 (ENSSLUG00000018579) #12	ormdl1 (ENSSLUG00000018570) #13	pms1 (ENSSLUG00000018218) #14	mstnb (ENSSLUG00000018180) #15	ENSSLUG00000018175 #16	hibch (ENSSLUG00000017666) #17	lss (ENSSLUG00000016140) #18	ENSSLUG00000015955 #19	ybey (ENSSLUG00000015934) #20	usp37 (ENSSLUG00000015895) #21	cnot9 (ENSSLUG00000015860) #22	PLCD4 (ENSSLUG00000015812) #23	ENSSLUG00000015766 #25	ENSSLUG00000015731 #23
Cottioidei	ANCESTRAL SPECIES	14	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.h #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35
Stickleback	MODERN SPECIES	16	ENSGACG00000002673 #7	ENSGACG00000002657 #8	fkbp7 (ENSGACG00000002654) #9	osgepl1 (ENSGACG00000002648) #10	alkbh6 (ENSGACG00000002647) #11	adat3 (ENSGACG00000002645) #12	ormdl1 (ENSGACG00000002642) #13	pms1 (ENSGACG00000002634) #14	mstnb (ENSGACG00000002630) #15	ENSGACG00000002627	hibch (ENSGACG00000002609) #17	lss (ENSGACG00000002592) #18	ENSGACG00000002570 #19	ybey (ENSGACG00000002567) #20	usp37 (ENSGACG00000002557) #21	cnot9 (ENSGACG00000002543) #22	PLCD4 (ENSGACG00000002540) #23	ZNF142 (ENSGACG00000002534) #24	zgc:136333 (ENSGACG00000002514) #26	TNS1 (ENSGACG00000002511) #27	igfbp5b (ENSGACG00000002508) #28	igfbp2b (ENSGACG00000002506) #29	slc4a3 (ENSGACG00000002501) #31	COL5A2 (ENSGACG00000002409) #32	gulp1a (ENSGACG00000002401) #33	ENSGACG00000002393 #34	ENSGACG00000002387 #35	gjc4b (ENSGACG00000002384)	CXCR2 (ENSGACG00000002380)	faima (ENSGACG00000002376)	ENSGACG00000002367
Lumpfish	MODERN SPECIES	13	ENSCLMG00005009983	ENSCLMG00005009982	SYMPK (ENSCLMG00005004930)	SLC35F5 (ENSCLMG00005004215)	ENSCLMG00005004213	gpr39 (ENSCLMG00005004212)	LYPD1 (ENSCLMG00005004211)	ftcdnl1 (ENSCLMG00005019254)	ENSCLMG00005019253	ENSCLMG00005019250	tfg (ENSCLMG00005019249)	jagn1a (ENSCLMG00005019248)	ENSCLMG00005019247 #19	ybey (ENSCLMG00005019246) #20	usp37 (ENSCLMG00005019240) #21	CNOT9 (ENSCLMG00005019237) #22	PLCD4 (ENSCLMG00005018795) #23	ZNF142 (ENSCLMG00005018790) #24	bcs1l (ENSCLMG00005018789) #25	zgc:136333 (ENSCLMG00005018672) #26	igfbp5b (ENSCLMG00005018668) #28	ENSCLMG00005018667 #29	slc4a3 (ENSCLMG00005018665) #31	COL5A2 (ENSCLMG00005018662) #32	gulp1a (ENSCLMG00005018660) #33	ENSCLMG00005018659 #34	ENSCLMG00005017855 #35	hspe1 (ENSCLMG00005017849)	hspd1 (ENSCLMG00005017848)	coq10b (ENSCLMG00005017847)	SF3B1 (ENSCLMG00005017761)
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Atherinomorphae	ANCESTRAL SPECIES	13	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Oryzias	ANCESTRAL SPECIES	10	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00950000183184.a.a.a #37	ENSGT00940000154360.A.b.a
Oryzias_a	ANCESTRAL SPECIES	45	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000161939	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00950000183184.a.a.a #37	ENSGT00940000154360.A.b.a	ENSGT00940000162768.B.a
Chinese medaka	MODERN SPECIES	703	GLS (ENSOSIG00000012852) #8	fkbp7 (ENSOSIG00000012807) #9	DNAI2 (ENSOSIG00000012796)	osgepl1 (ENSOSIG00000012793) #10	alkbh6 (ENSOSIG00000012789) #11	adat3 (ENSOSIG00000012786) #12	ormdl1 (ENSOSIG00000012784) #13	pms1 (ENSOSIG00000012727) #14	mstnb (ENSOSIG00000012721) #15	ENSOSIG00000012720 #16	hibch (ENSOSIG00000012281) #17	lss (ENSOSIG00000012228) #18	ENSOSIG00000012142 #19	ybey (ENSOSIG00000012136) #20	usp37 (ENSOSIG00000012075) #21	cnot9 (ENSOSIG00000012071) #22	PLCD4 (ENSOSIG00000010959) #23	ZNF142 (ENSOSIG00000010957) #24	bcs1l (ENSOSIG00000010956) #25	zgc:136333 (ENSOSIG00000010929) #26	ENSOSIG00000010923 ##27	TNS1 (ENSOSIG00000010884) #27
Japanese Medaka HdrR	MODERN SPECIES	13	GLS (ENSORLG00000015157) #8	fkbp7 (ENSORLG00000015126) #9	ENSORLG00000024865	alkbh6 (ENSORLG00000015103) #11	osgepl1 (ENSORLG00000015117) #10	ormdl1 (ENSORLG00000015100) #13	pms1 (ENSORLG00000015090) #14	mstnb (ENSORLG00000015057) #15	ENSORLG00000015048 #16	hibch (ENSORLG00000015037) #17	LSS (ENSORLG00000015003) #18	lss (ENSORLG00000028452) #18	MCM3AP (ENSORLG00000014980) #19	ybey (ENSORLG00000023922) #20	usp37 (ENSORLG00000014960) #21	cnot9 (ENSORLG00000014925) #22	PLCD4 (ENSORLG00000014901) #23	ZNF142 (ENSORLG00000014849) #24	bcs1l (ENSORLG00000014823) #25	zgc:136333 (ENSORLG00000014811) #26	ENSORLG00000028136	TNS1 (ENSORLG00000014781) #27	ENSORLG00000025476	ENSORLG00000022632	igfbp5b (ENSORLG00000030103) #28	igfbp2b (ENSORLG00000014695) #29	slc4a3 (ENSORLG00000030477) #31	COL5A2 (ENSORLG00000014658) #32	ENSORLG00000027152	gulp1a (ENSORLG00000014478) #33	ENSORLG00000025169
Oryzias_b	ANCESTRAL SPECIES	10	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000182996.b.b.c.b.h.b.a	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00950000183184.a.a.a #37
Indian medaka	MODERN SPECIES	18	ENSOMEG00000022183 #8	fkbp7 (ENSOMEG00000022136) #9	osgepl1 (ENSOMEG00000022115) #10	alkbh6 (ENSOMEG00000022075) #11	ormdl1 (ENSOMEG00000022066) #13	adat3 (ENSOMEG00000022041) #12	pms1 (ENSOMEG00000022030) #14	mstnb (ENSOMEG00000021961) #15	ENSOMEG00000021937 #16	hibch (ENSOMEG00000021921) #17	lss (ENSOMEG00000021872) #18	lss (ENSOMEG00000021845) #18	ENSOMEG00000021796 #19	ybey (ENSOMEG00000021714) #20	usp37 (ENSOMEG00000021685) #21	cnot9 (ENSOMEG00000021642) #22	PLCD4 (ENSOMEG00000000898) #23	ZNF142 (ENSOMEG00000000914) #24	bcs1l (ENSOMEG00000021530) #25	zgc:136333 (ENSOMEG00000021503) #26	ENSOMEG00000021450	TNS1 (ENSOMEG00000021378) #27	igfbp5b (ENSOMEG00000020658) #28	igfbp2b (ENSOMEG00000020645) #29	igfbp2b (ENSOMEG00000020624) #29	slc4a3 (ENSOMEG00000020610) #31	COL5A2 (ENSOMEG00000020553) #32	gulp1a (ENSOMEG00000020451) #33	ENSOMEG00000020328	ENSOMEG00000020315	ENSOMEG00000020290 #34
Javanese ricefish	MODERN SPECIES	13	ENSOJAG00000022473 #8	fkbp7 (ENSOJAG00000022365) #9	osgepl1 (ENSOJAG00000022351) #10	alkbh6 (ENSOJAG00000022343) #11	adat3 (ENSOJAG00000022338) #12	ormdl1 (ENSOJAG00000022329) #13	pms1 (ENSOJAG00000022261) #14	mstnb (ENSOJAG00000022229) #15	ENSOJAG00000022224 #16	hibch (ENSOJAG00000022179) #17	lss (ENSOJAG00000021730) #18	ENSOJAG00000021686	MCM3AP (ENSOJAG00000021610) #19	ybey (ENSOJAG00000021589) #20	usp37 (ENSOJAG00000021547) #21	cnot9 (ENSOJAG00000021505) #22	PLCD4 (ENSOJAG00000021256) #23	ZNF142 (ENSOJAG00000021212) #24	bcs1l (ENSOJAG00000021174) #25	zgc:136333 (ENSOJAG00000021136) #26	ENSOJAG00000021120	TNS1 (ENSOJAG00000020938) #27	igfbp5b (ENSOJAG00000020921) #28	igfbp2b (ENSOJAG00000020918) #29	ENSOJAG00000020910 #30	slc4a3 (ENSOJAG00000019855) #31	ENSOJAG00000019263	gulp1a (ENSOJAG00000019141) #33	ENSOJAG00000019121 #34	ENSOJAG00000018181 #35	ENSOJAG00000018059 #37
Cyprinodontiformes	ANCESTRAL SPECIES	15	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000166931	ENSGT00940000163205.d	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765.g #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Aplocheiloidei	ANCESTRAL SPECIES	241													ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27
Mangrove rivulus	MODERN SPECIES	136	lrrc3 (ENSKMAG00000018588)	pcbp3 (ENSKMAG00000018530)	ENSKMAG00000018460	ENSKMAG00000018283	CTDSP1 (ENSKMAG00000018212)	ENSKMAG00000018133	ENSKMAG00000018105	nabp1a (ENSKMAG00000018072)	cavin2a (ENSKMAG00000018058)	tmeff2a (ENSKMAG00000018018)	ENSKMAG00000018000	slc39a10 (ENSKMAG00000017958)	ENSKMAG00000017908 #19	ybey (ENSKMAG00000017890) #20	usp37 (ENSKMAG00000017787) #21	cnot9 (ENSKMAG00000017715) #22	PLCD4 (ENSKMAG00000017684) #23	ZNF142 (ENSKMAG00000017660) #24	bcs1l (ENSKMAG00000017637) #25	zgc:136333 (ENSKMAG00000017556) #26	ENSKMAG00000017529 #35	ENSKMAG00000017511 #34
Turquoise killifish	MODERN SPECIES	408													ENSNFUG00015017543 #19	ybey (ENSNFUG00015017595) #20	usp37 (ENSNFUG00015017626) #21	RQCD1 (ENSNFUG00015017817) #22	PLCD4 (ENSNFUG00015017897) #23	ZNF142 (ENSNFUG00015019936) #24
Cyprinodontoidei	ANCESTRAL SPECIES	30	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000166931	ENSGT00940000163205.d	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00390000013973.A.a.c.a.n	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b.n #26	ENSGT00950000182905.a.a.a.a.b.m #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765.g #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36
Poeciliinae	ANCESTRAL SPECIES	29	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000166931	ENSGT00940000163205.d	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00390000013973.A.a.c.a.n	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b.n #26	ENSGT00950000182905.a.a.a.a.b.m #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765.g #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Poecilia	ANCESTRAL SPECIES	46	ENSGT00940000153744.A.e.a #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000166931	ENSGT00940000163205.d	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00390000013973.A.a.c.a.n	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b.n #26	ENSGT00950000182905.a.a.a.a.b.m #26	ENSGT00940000155400.B.i #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765.g #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00950000183184.a.a.a #37	ENSGT00940000154360.A.b.a
NAME_6	ANCESTRAL SPECIES	68	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b.c #15	ENSGT00940000165813.b.d #15	ENSGT00940000166931	ENSGT00940000163205.d	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00390000013973.B.h	ENSGT00390000013973.A.a.c.a.n	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b.n #26	ENSGT00950000182905.a.a.a.a.b.m #26	ENSGT00940000155400.B.i #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765.g #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00950000183184.a.a.a #37	ENSGT00940000154360.A.b.a
Amazon molly	MODERN SPECIES	299				ENSPFOG00000011795	pms1 (ENSPFOG00000011839) #14	mstnb (ENSPFOG00000021946) #15	mstnb (ENSPFOG00000012130) #15	ddt (ENSPFOG00000012202)	gstt1b (ENSPFOG00000012223)	hibch (ENSPFOG00000012275) #17	lss (ENSPFOG00000012442) #18	ENSPFOG00000012841	ENSPFOG00000012860 #19	ybey (ENSPFOG00000013092) #20	usp37 (ENSPFOG00000013121) #21	cnot9 (ENSPFOG00000013296) #22	PLCD4 (ENSPFOG00000013304) #23	ZNF142 (ENSPFOG00000013660) #24	bcs1l (ENSPFOG00000013687) #25	CYP27A1 (ENSPFOG00000024088) #26	ENSPFOG00000013767 #26	TNS1 (ENSPFOG00000013948) #27	igfbp5b (ENSPFOG00000014472) #28	igfbp2b (ENSPFOG00000014498) #29	slc4a3 (ENSPFOG00000014529) #31	ENSPFOG00000014959 #32	gulp1a (ENSPFOG00000015272) #33	ENSPFOG00000015315 #34	ENSPFOG00000015333 #35	ENSPFOG00000015399 #37	lrrc3 (ENSPFOG00000020156)
Sailfin molly	MODERN SPECIES	142										ENSPLAG00000021596	ENSPLAG00000021589	ENSPLAG00000021586	ENSPLAG00000021578 #19	ybey (ENSPLAG00000021550) #20	usp37 (ENSPLAG00000021547) #21	cnot9 (ENSPLAG00000021539) #22	PLCD4 (ENSPLAG00000021512) #23	ZNF142 (ENSPLAG00000021487) #24	bcs1l (ENSPLAG00000021477) #25	CYP27A1 (ENSPLAG00000021467) #26	CYP27A1 (ENSPLAG00000021420) #26	TNS1 (ENSPLAG00000021354) #27
Guppy	MODERN SPECIES	450	alkbh6 (ENSPREG00000001145) #11	adat3 (ENSPREG00000001135) #12	ormdl1 (ENSPREG00000001117) #13	pms1 (ENSPREG00000001098) #14	mstnb (ENSPREG00000001076) #15	ddt (ENSPREG00000000981)	gstt1b (ENSPREG00000000954)	ENSPREG00000000948 #16	hibch (ENSPREG00000000941) #17	lss (ENSPREG00000000862) #18	ENSPREG00000000852	ENSPREG00000000836	ENSPREG00000000812 #19	ybey (ENSPREG00000000796) #20	usp37 (ENSPREG00000000789) #21	cnot9 (ENSPREG00000000758) #22	PLCD4 (ENSPREG00000000734) #23	ZNF142 (ENSPREG00000000722) #24	bcs1l (ENSPREG00000000620) #25	CYP27A1 (ENSPREG00000000548) #26	ENSPREG00000000541 #26	ENSPREG00000000540 #27	ENSPREG00000020879 #27	igfbp5b (ENSPREG00000020870) #28	igfbp2b (ENSPREG00000020866) #29	slc4a3 (ENSPREG00000020828) #31	COL5A2 (ENSPREG00000020747) #32	gulp1a (ENSPREG00000020679) #33	ENSPREG00000020656 #34	ENSPREG00000020639 #35	ENSPREG00000020624 #36
Platyfish	MODERN SPECIES	21	wdr75 (ENSXMAG00000005811)	ENSXMAG00000022033 #7	ENSXMAG00000005845 #7	ENSXMAG00000005850 #8	fkbp7 (ENSXMAG00000005881) #9	osgepl1 (ENSXMAG00000005885) #10	ormdl1 (ENSXMAG00000005900) #13	adat3 (ENSXMAG00000005897) #12	pms1 (ENSXMAG00000005904) #14	ENSXMAG00000026653 #16	hibch (ENSXMAG00000006425) #17	lss (ENSXMAG00000006445) #18	ENSXMAG00000015028 #19	ybey (ENSXMAG00000015012) #20	usp37 (ENSXMAG00000014971) #21	cnot9 (ENSXMAG00000006474) #22	PLCD4 (ENSXMAG00000006488) #23	ZNF142 (ENSXMAG00000024729) #24	bcs1l (ENSXMAG00000006514) #25	CYP27A1 (ENSXMAG00000006540) #26	ENSXMAG00000006529 #26	ENSXMAG00000028776	TNS1 (ENSXMAG00000009264) #27	ENSXMAG00000028950	ENSXMAG00000021442	ENSXMAG00000026794	igfbp5b (ENSXMAG00000006558) #28	igfbp2b (ENSXMAG00000026555) #29	slc4a3 (ENSXMAG00000006572) #31	ENSXMAG00000028362 #32	gulp1a (ENSXMAG00000007102) #33
NAME_4	ANCESTRAL SPECIES	78	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000166931	ENSGT00940000163205.d	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570.f #18	ENSGT00390000013973.A.a.c.a.n	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b.n #26	ENSGT00950000182905.a.a.a.a.b.m #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765.g #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00950000183184.a.a.a #37
Sheepshead minnow	MODERN SPECIES	257								ENSCVAG00000022778	ENSCVAG00000022748 #16	hibch (ENSCVAG00000022738) #17	lss (ENSCVAG00000022724) #18	ENSCVAG00000022671	ENSCVAG00000022653 #19	ybey (ENSCVAG00000022642) #20	usp37 (ENSCVAG00000022633) #21	cnot9 (ENSCVAG00000022621) #22	PLCD4 (ENSCVAG00000022607) #23	ZNF142 (ENSCVAG00000022595) #24	bcs1l (ENSCVAG00000022527) #25	CYP27A1 (ENSCVAG00000022499) #26	ENSCVAG00000022455 #26	NQO2 (ENSCVAG00000022450)	TNS1 (ENSCVAG00000022436) #27	igfbp5b (ENSCVAG00000022402) #28	igfbp2b (ENSCVAG00000022399) #29	ENSCVAG00000022395 #30	slc4a3 (ENSCVAG00000022384) #31	COL5A2 (ENSCVAG00000022151) #32	gulp1a (ENSCVAG00000022087) #33	ENSCVAG00000022015 #34	ENSCVAG00000022001 #35
Mummichog	MODERN SPECIES	1082													ENSFHEG00000001113 #19	ybey (ENSFHEG00000001108) #20	usp37 (ENSFHEG00000001100) #21	cnot9 (ENSFHEG00000001097) #22
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00710000108330 #30	ENSGT00940000159765 #31	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00950000183184.a.a.a #37
Pomacentridae	ANCESTRAL SPECIES	51	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765 #31	ENSGT00940000155224.d	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00940000182362
Pomacentridae_A	ANCESTRAL SPECIES	52	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765 #31	ENSGT00940000155224.d	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00940000177805 #36	ENSGT00940000182362
Amphiprion	ANCESTRAL SPECIES	52	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000155400.B #27	ENSGT00940000182580	ENSGT00940000155890.a.a #28	ENSGT00940000158542.b #29	ENSGT00940000159765 #31	ENSGT00940000155224.d	ENSGT00940000155675.p.a #32	ENSGT00940000156186.l.b #33	ENSGT00940000165273 #34	ENSGT00940000165235.b #35	ENSGT00950000183184.a.a.a #37
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	131																cnot9 (ENSAOCG00000007672) #22	PLCD4 (ENSAOCG00000007641) #23	ZNF142 (ENSAOCG00000007625) #24	bcs1l (ENSAOCG00000007615) #25	CYP27A1 (ENSAOCG00000007578) #26
Clown anemonefish	MODERN SPECIES	2268										ENSAOCG00000017191 #16	hibch (ENSAOCG00000017204) #17	lss (ENSAOCG00000017280) #18	ENSAOCG00000017340 #19	ybey (ENSAOCG00000017346) #20	usp37 (ENSAOCG00000017372) #21	cnot9 (ENSAOCG00000017401) #22	PLCD4 (ENSAOCG00000017435) #23
Orange clownfish	MODERN SPECIES	3	ENSAPEG00000003821 #7	ENSAPEG00000003850 #8	fkbp7 (ENSAPEG00000003880) #9	osgepl1 (ENSAPEG00000003890) #10	alkbh6 (ENSAPEG00000003934) #11	ormdl1 (ENSAPEG00000003961) #13	adat3 (ENSAPEG00000003977) #12	pms1 (ENSAPEG00000003991) #14	mstnb (ENSAPEG00000004012) #15	ENSAPEG00000004029 #16	hibch (ENSAPEG00000004045) #17	lss (ENSAPEG00000004092) #18	ENSAPEG00000004174 #19	ybey (ENSAPEG00000004197) #20	usp37 (ENSAPEG00000004235) #21	cnot9 (ENSAPEG00000004365) #22	PLCD4 (ENSAPEG00000004394) #23	ZNF142 (ENSAPEG00000004469) #24	bcs1l (ENSAPEG00000004528) #25	zgc:136333 (ENSAPEG00000004557) #26	TNS1 (ENSAPEG00000004583) #27	ENSAPEG00000004603	ENSAPEG00000004619	igfbp5b (ENSAPEG00000004632) #28	igfbp2b (ENSAPEG00000004641) #29	slc4a3 (ENSAPEG00000004673) #31	ENSAPEG00000004861	gulp1a (ENSAPEG00000004993) #33	ENSAPEG00000005066 #34	ENSAPEG00000005085 #35	ENSAPEG00000005152 #36
Spiny chromis	MODERN SPECIES	2732													ENSAPOG00000016059 #19	ybey (ENSAPOG00000016069) #20	usp37 (ENSAPOG00000016082) #21	cnot9 (ENSAPOG00000016119) #22
Bicolor damselfish	MODERN SPECIES	1960										ENSSPAG00000015636 #16	hibch (ENSSPAG00000015644) #17	lss (ENSSPAG00000015689) #18	ENSSPAG00000015778 #19	ybey (ENSSPAG00000015824) #20	usp37 (ENSSPAG00000015839) #21	cnot9 (ENSSPAG00000015881) #22	PLCD4 (ENSSPAG00000015928) #23	ZNF142 (ENSSPAG00000016019) #24
Cichlidae	ANCESTRAL SPECIES	14	ENSGT00940000155890.a.a #28	ENSGT00940000155400.B #27	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00390000005415 #25	ENSGT00940000163074 #24	ENSGT00940000156180.f #23	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00390000007295	ENSGT00390000012446	ENSGT01020000230587	ENSGT00390000015143	ENSGT00390000006303	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00390000017045	ENSGT00390000005949	ENSGT01100000263518.A.a.b	ENSGT00910000148192
Midas cichlid	MODERN SPECIES	33				bcs1l (ENSACIG00000004834) #25	ZNF142 (ENSACIG00000004854) #24	PLCD4 (ENSACIG00000004893) #23	ormdl1 (ENSACIG00000004924) #13	pms1 (ENSACIG00000004933) #14	mstnb (ENSACIG00000005038) #15	ENSACIG00000005048 #16	hibch (ENSACIG00000005054) #17	lss (ENSACIG00000005086) #18	ENSACIG00000005137 #19	ybey (ENSACIG00000005308) #20	usp37 (ENSACIG00000005323) #21	cnot9 (ENSACIG00000005487) #22	zgc:136439 (ENSACIG00000005506)	ENSACIG00000005548	ENSACIG00000005575	slc40a1 (ENSACIG00000005588)	wdr75 (ENSACIG00000005615)	STAT4 (ENSACIG00000005777) #7	ENSACIG00000005855 #7	ENSACIG00000006253 #7	ENSACIG00000006272 #8	fkbp7 (ENSACIG00000006305) #9	ENSACIG00000006316 #9	osgepl1 (ENSACIG00000006320) #10	alkbh6 (ENSACIG00000006337) #11	adat3 (ENSACIG00000006347) #12	SYMPK (ENSACIG00000006357)
Pseudocrenilabrinae	ANCESTRAL SPECIES	15	ENSGT00940000155890.a.a #28	ENSGT00940000155400.B #27	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00390000005415 #25	ENSGT00940000163074 #24	ENSGT00940000156180.f #23	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00390000007295	ENSGT00390000012446	ENSGT01020000230587	ENSGT00390000015143	ENSGT00390000006303	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00390000017045	ENSGT00390000005949	ENSGT01100000263518.A.a.b	ENSGT00910000148192
Nile tilapia	MODERN SPECIES	7	zgc:136333 (ENSONIG00000007177) #26	ENSONIG00000032736	bcs1l (ENSONIG00000007176) #25	ZNF142 (ENSONIG00000007174) #24	PLCD4 (ENSONIG00000007170) #23	ormdl1 (ENSONIG00000018245) #13	pms1 (ENSONIG00000007164) #14	mstnb (ENSONIG00000007163) #15	ENSONIG00000020754 #16	hibch (ENSONIG00000007161) #17	ENSONIG00000041682	lss (ENSONIG00000016840) #18	ENSONIG00000016836 #19	ybey (ENSONIG00000042756) #20	usp37 (ENSONIG00000016831) #21	cnot9 (ENSONIG00000016830) #22	zgc:136439 (ENSONIG00000038295)	asnsd1 (ENSONIG00000016829)	ENSONIG00000038814	slc40a1 (ENSONIG00000032283)	wdr75 (ENSONIG00000016827)	STAT4 (ENSONIG00000016817) #7	ENSONIG00000040122 #7	ENSONIG00000016812 #8	fkbp7 (ENSONIG00000016810) #9	osgepl1 (ENSONIG00000016808) #10	alkbh6 (ENSONIG00000035409) #11	adat3 (ENSONIG00000021155) #12	SYMPK (ENSONIG00000016802)	SLC35F5 (ENSONIG00000016798)	gpr39 (ENSONIG00000016797)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	14	ENSGT00940000155890.a.a #28	ENSGT00940000155400.B #27	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00390000005415 #25	ENSGT00940000163074 #24	ENSGT00940000156180.f #23	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00390000007295	ENSGT00390000012446	ENSGT00390000015143	ENSGT00390000006303	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00390000017045	ENSGT00390000005949	ENSGT01100000263518.A.a.b	ENSGT00910000148192	ENSGT00390000002215.i.a
Haplochromini	ANCESTRAL SPECIES	19	ENSGT00940000155890.a.a #28	ENSGT00940000155400.B #27	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00390000005415 #25	ENSGT00940000163074 #24	ENSGT00940000156180.f #23	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00390000007295	ENSGT00390000012446	ENSGT00390000015143	ENSGT00390000006303	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00390000017045	ENSGT00390000005949	ENSGT01100000263518.A.a.b	ENSGT00910000148192	ENSGT00390000002215.i.a
Burton s mouthbrooder	MODERN SPECIES	544							ormdl1 (ENSHBUG00000022540) #13	pms1 (ENSHBUG00000022546) #14	mstnb (ENSHBUG00000022560) #15	ENSHBUG00000022570 #16	hibch (ENSHBUG00000022595) #17	lss (ENSHBUG00000000696) #18	ENSHBUG00000022726 #19	ybey (ENSHBUG00000022755) #20	usp37 (ENSHBUG00000022775) #21	cnot9 (ENSHBUG00000022819) #22	zgc:136439 (ENSHBUG00000022876)	asnsd1 (ENSHBUG00000022898)	slc40a1 (ENSHBUG00000022927)	wdr75 (ENSHBUG00000023108)	STAT4 (ENSHBUG00000000711) #7	ENSHBUG00000023262 #7	ENSHBUG00000023387 #8	fkbp7 (ENSHBUG00000023447) #9	osgepl1 (ENSHBUG00000023523) #10	alkbh6 (ENSHBUG00000023541) #11	adat3 (ENSHBUG00000023550) #12	SYMPK (ENSHBUG00000023564)	SLC35F5 (ENSHBUG00000023580)	ENSHBUG00000023593	gpr39 (ENSHBUG00000023600)
Haplochromini_A	ANCESTRAL SPECIES	19	ENSGT00940000155890.a.a #28	ENSGT00940000155400.B #27	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00390000005415 #25	ENSGT00940000163074 #24	ENSGT00940000156180.f #23	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00390000007295	ENSGT00390000012446	ENSGT00390000015143	ENSGT00390000006303	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00390000017045	ENSGT00390000005949	ENSGT01100000263518.A.a.b	ENSGT00910000148192	ENSGT00390000002215.i.a
P. nyererei	MODERN SPECIES	366	igfbp5b (ENSPNYG00000012598) #28	TNS1 (ENSPNYG00000012484) #27	zgc:136333 (ENSPNYG00000012405) #26	bcs1l (ENSPNYG00000012374) #25	ZNF142 (ENSPNYG00000012329) #24	PLCD4 (ENSPNYG00000012295) #23	ormdl1 (ENSPNYG00000012277) #13	pms1 (ENSPNYG00000012259) #14	mstnb (ENSPNYG00000012235) #15	ENSPNYG00000012220 #16	hibch (ENSPNYG00000012136) #17	lss (ENSPNYG00000011989) #18	ENSPNYG00000011931 #19	ybey (ENSPNYG00000011909) #20	usp37 (ENSPNYG00000011888) #21	cnot9 (ENSPNYG00000011857) #22	zgc:136439 (ENSPNYG00000011840)	asnsd1 (ENSPNYG00000011819)	slc40a1 (ENSPNYG00000011792)	wdr75 (ENSPNYG00000011767)	STAT4 (ENSPNYG00000011623) #7	ENSPNYG00000011587 #7	ENSPNYG00000011543 #8	fkbp7 (ENSPNYG00000011516) #9	osgepl1 (ENSPNYG00000011500) #10	alkbh6 (ENSPNYG00000011487) #11	adat3 (ENSPNYG00000011478) #12	SYMPK (ENSPNYG00000011455)	SLC35F5 (ENSPNYG00000011426)	ENSPNYG00000011420	gpr39 (ENSPNYG00000011407)
Haplochromini_B	ANCESTRAL SPECIES	39	ENSGT00940000155890.a.a #28	ENSGT00940000155400.B #27	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00390000005415 #25	ENSGT00940000163074 #24	ENSGT00940000156180.f #23	ENSGT00950000183178.b.a #13	ENSGT00940000157085 #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00390000007295	ENSGT00390000012446	ENSGT00390000015143	ENSGT00390000006303	ENSGT01050000244905.D #7	ENSGT00390000010463.a.b.c.b #8	ENSGT00940000159964 #9	ENSGT00940000153744.A #10	ENSGT00510000048626 #11	ENSGT00390000010706 #12	ENSGT00390000017045	ENSGT00390000005949	ENSGT01100000263518.A.a.b	ENSGT00910000148192	ENSGT00390000002215.i.a
Zebra mbuna	MODERN SPECIES	1098	TNS1 (ENSMZEG00005014600) #27	ENSMZEG00005014583 #27	zgc:136333 (ENSMZEG00005014558) #26	bcs1l (ENSMZEG00005014547) #25	ZNF142 (ENSMZEG00005014543) #24	PLCD4 (ENSMZEG00005014505) #23	ormdl1 (ENSMZEG00005014486) #13	pms1 (ENSMZEG00005014474) #14	mstnb (ENSMZEG00005014466) #15	ENSMZEG00005014463 #16	hibch (ENSMZEG00005014450) #17	lss (ENSMZEG00005014423) #18	ENSMZEG00005014406 #19	ybey (ENSMZEG00005014396) #20	usp37 (ENSMZEG00005014377) #21	cnot9 (ENSMZEG00005014365) #22	zgc:136439 (ENSMZEG00005014351)	asnsd1 (ENSMZEG00005014348)	slc40a1 (ENSMZEG00005014335)	wdr75 (ENSMZEG00005014322)	STAT4 (ENSMZEG00005014301) #7	ENSMZEG00005014277 #7	ENSMZEG00005014227 #8	fkbp7 (ENSMZEG00005014215) #9	osgepl1 (ENSMZEG00005014198) #10	alkbh6 (ENSMZEG00005014192) #11	adat3 (ENSMZEG00005014189) #12	SYMPK (ENSMZEG00005014146)	SLC35F5 (ENSMZEG00005014127)	ENSMZEG00005014119	gpr39 (ENSMZEG00005014116)
Eastern happy	MODERN SPECIES	7	TNS1 (ENSACLG00000003009) #27	zgc:136333 (ENSACLG00000002973) #26	ENSACLG00000002949	bcs1l (ENSACLG00000002897) #25	ZNF142 (ENSACLG00000002891) #24	PLCD4 (ENSACLG00000002876) #23	ormdl1 (ENSACLG00000002790) #13	pms1 (ENSACLG00000002781) #14	mstnb (ENSACLG00000002763) #15	ENSACLG00000002757 #16	hibch (ENSACLG00000002744) #17	lss (ENSACLG00000002587) #18	ENSACLG00000002461 #19	ybey (ENSACLG00000002438) #20	usp37 (ENSACLG00000002198) #21	cnot9 (ENSACLG00000002163) #22	zgc:136439 (ENSACLG00000002150)	asnsd1 (ENSACLG00000002117)	slc40a1 (ENSACLG00000002052)	wdr75 (ENSACLG00000002025)	STAT4 (ENSACLG00000001992) #7	ENSACLG00000001967 #7	ENSACLG00000001961	ENSACLG00000001867 #8	fkbp7 (ENSACLG00000001857) #9	osgepl1 (ENSACLG00000001841) #10	alkbh6 (ENSACLG00000001836) #11	adat3 (ENSACLG00000001830) #12	SYMPK (ENSACLG00000001813)	SLC35F5 (ENSACLG00000001791)	ENSACLG00000001784
Lyretail cichlid	MODERN SPECIES	485				ZNF142 (ENSNBRG00000019248) #24	PLCD4 (ENSNBRG00000019214) #23	ormdl1 (ENSNBRG00000019200) #13	pms1 (ENSNBRG00000019179) #14	ENSNBRG00000019021 #14	mstnb (ENSNBRG00000018976) #15	ENSNBRG00000018970 #16	hibch (ENSNBRG00000018847) #17	lss (ENSNBRG00000018750) #18	ENSNBRG00000018677 #19	ybey (ENSNBRG00000018657) #20	usp37 (ENSNBRG00000018529) #21	cnot9 (ENSNBRG00000018481) #22	zgc:136439 (ENSNBRG00000018466)	asnsd1 (ENSNBRG00000018455)	slc40a1 (ENSNBRG00000018434)	ENSNBRG00000018422	ENSNBRG00000018406	STAT4 (ENSNBRG00000018367) #7	ENSNBRG00000018353 #7	ENSNBRG00000018284 #8	ENSNBRG00000018243	FKBP7 (ENSNBRG00000018221) #9	osgepl1 (ENSNBRG00000018198) #10	alkbh6 (ENSNBRG00000018188) #11	adat3 (ENSNBRG00000018179) #12	SYMPK (ENSNBRG00000018101)	SLC35F5 (ENSNBRG00000018082)
Tiger tail seahorse	MODERN SPECIES	208	STAT4 (ENSHCOG00000010429) #7	ENSHCOG00000009987 #7	ENSHCOG00000009979 #8	fkbp7 (ENSHCOG00000009934) #9	osgepl1 (ENSHCOG00000009927) #10	alkbh6 (ENSHCOG00000000308) #11	adat3 (ENSHCOG00000000306) #12	ormdl1 (ENSHCOG00000009887) #13	pms1 (ENSHCOG00000009870) #14	mstnb (ENSHCOG00000009683) #15	ENSHCOG00000006942 #16	hibch (ENSHCOG00000006925) #17	lss (ENSHCOG00000006843) #18	ybey (ENSHCOG00000006749) #20	usp37 (ENSHCOG00000006728) #21	cnot9 (ENSHCOG00000006646) #22	PLCD4 (ENSHCOG00000006629) #23	ZNF142 (ENSHCOG00000006596) #24	ENSHCOG00000006583	bcs1l (ENSHCOG00000006571) #25	zgc:136333 (ENSHCOG00000006560) #26	ENSHCOG00000006522	ENSHCOG00000006503	slc39a10 (ENSHCOG00000006465)	tmeff2a (ENSHCOG00000006398)	cavin2a (ENSHCOG00000006383)	nabp1a (ENSHCOG00000006374)	ENSHCOG00000006365	ENSHCOG00000006343	CTDSP1 (ENSHCOG00000006267)	ENSHCOG00000006245
Pinecone sodierfish	MODERN SPECIES	13	asnsd1 (ENSMMDG00005020624)	zgc:136439 (ENSMMDG00005020632)	SYMPK (ENSMMDG00005020669)	osgepl1 (ENSMMDG00005021222) #10	adat3 (ENSMMDG00005021224) #12	alkbh6 (ENSMMDG00005021227) #11	ormdl1 (ENSMMDG00005021231) #13	pms1 (ENSMMDG00005021239) #14	mstnb (ENSMMDG00005021255) #15	ENSMMDG00005021258 #16	hibch (ENSMMDG00005021269) #17	lss (ENSMMDG00005021518) #18	ENSMMDG00005021757 #19	ybey (ENSMMDG00005021764) #20	usp37 (ENSMMDG00005021787) #21	cnot9 (ENSMMDG00005021915) #22	PLCD4 (ENSMMDG00005021923) #23	ZNF142 (ENSMMDG00005021928) #24	bcs1l (ENSMMDG00005021930) #25	zgc:136333 (ENSMMDG00005013527) #26	TNS1 (ENSMMDG00005013571) #27	igfbp5b (ENSMMDG00005013723) #28	igfbp2b (ENSMMDG00005013726) #29	ENSMMDG00005013730 #30	slc4a3 (ENSMMDG00005013733) #31	COL5A2 (ENSMMDG00005013736) #32	gulp1a (ENSMMDG00005013737) #33	ENSMMDG00005013741 #34	ENSMMDG00005013745 #35	ENSMMDG00005013748 #37	lrrc3 (ENSMMDG00005013749)
Cod	MODERN SPECIES	12	osgepl1 (ENSGMOG00000012648) #10	ENSGMOG00000020607 #11	adat3 (ENSGMOG00000028591) #12	ormdl1 (ENSGMOG00000012643) #13	pms1 (ENSGMOG00000012641) #14	mstnb (ENSGMOG00000012639) #15	ENSGMOG00000027801 #16	hibch (ENSGMOG00000012636) #17	LSS (ENSGMOG00000012634) #18	ENSGMOG00000023210	LSS (ENSGMOG00000027003) #18	ENSGMOG00000012627 #19	ENSGMOG00000033121	YBEY (ENSGMOG00000012625) #20	USP37 (ENSGMOG00000012619) #21	CNOT9 (ENSGMOG00000012616) #22	PLCD4 (ENSGMOG00000012615) #23	ZNF142 (ENSGMOG00000029104) #24	bcs1l (ENSGMOG00000012601) #25	zgc:136333 (ENSGMOG00000012598) #26	TNS1 (ENSGMOG00000032397) #27	igfbp5b (ENSGMOG00000019318) #28	igfbp2b (ENSGMOG00000002992) #29	slc4a3 (ENSGMOG00000019300) #31	ENSGMOG00000019277 #32	gulp1a (ENSGMOG00000019273) #33	ENSGMOG00000019130 #34	ENSGMOG00000019119 #35	ENSGMOG00000008599 #37	lrrc3 (ENSGMOG00000008605)	pcbp3 (ENSGMOG00000008611)
Protacanthopterygii	ANCESTRAL SPECIES	64	ENSGT01020000230587	ENSGT00390000012446	ENSGT00390000007295	ENSGT00680000100065	ENSGT00940000153744.A #10	ENSGT00390000010706 #12	ENSGT00950000183178.b.a #13	ENSGT00940000157085.i #14	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091 #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000167133	ENSGT00940000160544.f.a	ENSGT01090000259987.a.a.a.p	ENSGT00940000155992.c.a	ENSGT00530000063273.b.a.a	ENSGT00720000108822	ENSGT00940000153969.b	ENSGT00940000165503	ENSGT00940000166532	ENSGT00940000157440.m.a	ENSGT00940000155324.h
Salmoninae	ANCESTRAL SPECIES	221	ENSGT00390000012446.c	ENSGT00390000007295	ENSGT00680000100065	ENSGT00940000153744.A #10	ENSGT00950000183178.b.a.f.a.a #13	ENSGT00390000010706.d #12	ENSGT00950000183178.b.a.f.b #13	ENSGT00940000157085.i.a #14	ENSGT00940000165813.b.e #15	ENSGT00940000167830.c #16	ENSGT00890000139491.n #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.f.b #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f.h #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b.j #26	ENSGT00940000167133	ENSGT00940000160544.f.a	ENSGT01090000259987.a.a.a.p.b	ENSGT00940000155992.c.a.c	ENSGT00530000063273.b.a.a.g	ENSGT00720000108822.c	ENSGT00940000153969.b	ENSGT00940000165503.j	ENSGT00940000166532.g	ENSGT00940000157440.m.a.c	ENSGT00940000155324.g.b
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00390000012446.c	ENSGT00390000007295	ENSGT00680000100065	ENSGT00940000153744.A #10	ENSGT00950000183178.b.a.f.a.a #13	ENSGT00390000010706.d #12	ENSGT00950000183178.b.a.f.b #13	ENSGT00940000157085.i.a #14	ENSGT00940000165813.b.e #15	ENSGT00940000167830.c #16	ENSGT00890000139491.n #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.f.b #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f.h #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b.j #26	ENSGT00940000167133	ENSGT00940000160544.f.a	ENSGT01090000259987.a.a.a.p.b	ENSGT00940000155992.c.a.c	ENSGT00530000063273.b.a.a.g	ENSGT00720000108822.c	ENSGT00940000153969.b	ENSGT00940000165503.j	ENSGT00940000166532.g	ENSGT00940000157440.m.a.c	ENSGT00680000100037.kb
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT00390000015143.k	ENSGT01020000230587	ENSGT00390000012446.c	ENSGT00390000007295	ENSGT00680000100065	ENSGT00940000153744.A.h #10	ENSGT00950000183178.b.a.f.b #13	ENSGT00940000157085.i.a #14	ENSGT00940000165813.b.e #15	ENSGT00940000167830.c #16	ENSGT00890000139491.n #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.f.b #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f.h #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b.j #26	ENSGT00940000167133.e	ENSGT00940000160544.f.a	ENSGT01090000259987.a.a.a.p.b	ENSGT00940000155992.c.a.c	ENSGT00530000063273.b.a.a.g	ENSGT00720000108822.c	ENSGT00940000153969.b	ENSGT00940000165503.j	ENSGT00940000166532.g	ENSGT00940000157440.m.a.c	ENSGT00680000100037.kb
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT00390000015143.k	ENSGT01020000230587	ENSGT00390000012446.c	ENSGT00390000007295	ENSGT00680000100065	ENSGT00940000153744.A.h #10	ENSGT00950000183178.b.a.f.b #13	ENSGT00940000157085.i.a #14	ENSGT00940000165813.b.e #15	ENSGT00940000167830.c #16	ENSGT00890000139491.n #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.f.b #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f.h #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b.j #26	ENSGT00940000167133.e	ENSGT00940000160544.f.a	ENSGT01090000259987.a.a.a.p.b	ENSGT00940000155992.c.a.c	ENSGT00530000063273.b.a.a.g	ENSGT00720000108822.c	ENSGT00940000153969.b	ENSGT00940000165503.j	ENSGT00940000166532.g	ENSGT00940000157440.m.a.c	ENSGT00680000100037.kb
Chinook salmon	MODERN SPECIES	18	slc40a1 (ENSOTSG00005036106)	asnsd1 (ENSOTSG00005036105)	zgc:136439 (ENSOTSG00005036102)	ankar (ENSOTSG00005036100)	osgepl1 (ENSOTSG00005036095) #10	ENSOTSG00005036091	ormdl1 (ENSOTSG00005036090) #13	pms1 (ENSOTSG00005036089) #14	ENSOTSG00005036088 #16	mstnb (ENSOTSG00005036082) #15	hibch (ENSOTSG00005036080) #17	lss (ENSOTSG00005033926) #18	MCM3AP (ENSOTSG00005033913) #19	ybey (ENSOTSG00005033911) #20	usp37 (ENSOTSG00005033524) #21	cnot9 (ENSOTSG00005033522) #22	PLCD4 (ENSOTSG00005033521) #23	ZNF142 (ENSOTSG00005033520) #24	bcs1l (ENSOTSG00005033519) #25	CYP27A1 (ENSOTSG00005033518) #26	zgc:66484 (ENSOTSG00005033517)	vil1 (ENSOTSG00005033430)	ITGB2 (ENSOTSG00005024955)	ADARB1 (ENSOTSG00005024907)	agr1 (ENSOTSG00005024905)	traf3ip1 (ENSOTSG00005024903)	asb1 (ENSOTSG00005024901)	ENSOTSG00005024900	twist2 (ENSOTSG00005024899)	hdac4 (ENSOTSG00005023226)	gjc4b (ENSOTSG00005023219)
Coho salmon	MODERN SPECIES	18	wdr75 (ENSOKIG00005018103)	slc40a1 (ENSOKIG00005018049)	ENSOKIG00005018024	asnsd1 (ENSOKIG00005018043)	zgc:136439 (ENSOKIG00005018011)	ankar (ENSOKIG00005017969)	osgepl1 (ENSOKIG00005017920) #10	ormdl1 (ENSOKIG00005017849) #13	pms1 (ENSOKIG00005017740) #14	mstnb (ENSOKIG00005017681) #15	ENSOKIG00005017674 #16	lss (ENSOKIG00005017548) #18	MCM3AP (ENSOKIG00005017233) #19	ybey (ENSOKIG00005017203) #20	usp37 (ENSOKIG00005017071) #21	CNOT9 (ENSOKIG00005017002) #22	PLCD4 (ENSOKIG00005016886) #23	ZNF142 (ENSOKIG00005016864) #24	bcs1l (ENSOKIG00005016854) #25	CYP27A1 (ENSOKIG00005016838) #26	zgc:66484 (ENSOKIG00005016818)	vil1 (ENSOKIG00005016604)	ITGB2 (ENSOKIG00005015663)	ADARB1 (ENSOKIG00005015504)	agr1 (ENSOKIG00005015486)	traf3ip1 (ENSOKIG00005015449)	asb1 (ENSOKIG00005015436)	ENSOKIG00005015426	twist2 (ENSOKIG00005015419)	hdac4 (ENSOKIG00005014642)	gjc4b (ENSOKIG00005014580)
Rainbow trout	MODERN SPECIES	14	zgc:136439 (ENSOMYG00000013326)	ankar (ENSOMYG00000013340)	osgepl1 (ENSOMYG00000013364) #10	ENSOMYG00000072719	ENSOMYG00000013382	ormdl1 (ENSOMYG00000013398) #13	pms1 (ENSOMYG00000013452) #14	ENSOMYG00000059309	ENSOMYG00000077870	mstnb (ENSOMYG00000013485) #15	ENSOMYG00000055667 #16	LSS (ENSOMYG00000013613) #18	ENSOMYG00000013755 #19	YBEY (ENSOMYG00000013844) #20	USP37 (ENSOMYG00000013941) #21	CNOT9 (ENSOMYG00000014285) #22	PLCD4 (ENSOMYG00000014350) #23	ZNF142 (ENSOMYG00000014477) #24	bcs1l (ENSOMYG00000014485) #25	ENSOMYG00000014513 #26	ENSOMYG00000068674	ENSOMYG00000014681	ENSOMYG00000016079	ENSOMYG00000016214	ENSOMYG00000016259	agr1 (ENSOMYG00000016488)	traf3ip1 (ENSOMYG00000016497)	ENSOMYG00000065849	asb1 (ENSOMYG00000016548)	ENSOMYG00000076629	twist2 (ENSOMYG00000016557)
Salmo	ANCESTRAL SPECIES	10	ENSGT00390000012446.c	ENSGT00390000007295	ENSGT00680000100065	ENSGT00940000153744.A #10	ENSGT00950000183178.b.a.f.a.a #13	ENSGT00390000010706.d #12	ENSGT00950000183178.b.a.f.b #13	ENSGT00940000157085.i.a #14	ENSGT00940000165813.b.e #15	ENSGT00940000167830.c #16	ENSGT00890000139491.n #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000158091.f.b #21	ENSGT00390000001225.s.a #22	ENSGT00940000156180.f.h #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b.j #26	ENSGT00940000160544.f.a	ENSGT01090000259987.a.a.a.p.b	ENSGT00940000155992.c.a.c	ENSGT00530000063273.b.a.a.g	ENSGT00720000108822.c	ENSGT00940000153969.b	ENSGT00940000165503.j	ENSGT00940000166532.g	ENSGT00940000157440.m.a.c	ENSGT00680000100037.kb	ENSGT00940000164536.a.b.f
River trout	MODERN SPECIES	12	ENSSTUG00000014690 #8	slc40a1 (ENSSTUG00000014698)	asnsd1 (ENSSTUG00000014713)	zgc:136439 (ENSSTUG00000014726)	ankar (ENSSTUG00000014736)	osgepl1 (ENSSTUG00000014780) #10	ormdl1 (ENSSTUG00000014859) #13	pms1 (ENSSTUG00000014898) #14	mstnb (ENSSTUG00000015112) #15	ENSSTUG00000015137 #16	hibch (ENSSTUG00000015144) #17	lss (ENSSTUG00000015271) #18	MCM3AP (ENSSTUG00000015687) #19	ybey (ENSSTUG00000015835) #20	usp37 (ENSSTUG00000015852) #21	cnot9 (ENSSTUG00000016141) #22	PLCD4 (ENSSTUG00000016165) #23	ZNF142 (ENSSTUG00000016305) #24	bcs1l (ENSSTUG00000016310) #25	ENSSTUG00000016332 #26	vil1 (ENSSTUG00000016422)	ITGB2 (ENSSTUG00000018110)	ENSSTUG00000021455	ADARB1 (ENSSTUG00000021460)	agr1 (ENSSTUG00000021502)	traf3ip1 (ENSSTUG00000021506)	asb1 (ENSSTUG00000021531)	ENSSTUG00000021538	twist2 (ENSSTUG00000021540)	hdac4 (ENSSTUG00000021569)	gjc4b (ENSSTUG00000022067)
Atlantic salmon	MODERN SPECIES	13	ENSSSAG00000091717	slc40a1 (ENSSSAG00000050163)	wdr75 (ENSSSAG00000050305)	zgc:136439 (ENSSSAG00000092441)	ankar (ENSSSAG00000049948)	osgepl1 (ENSSSAG00000049909) #10	adat3 (ENSSSAG00000049890) #12	ormdl1 (ENSSSAG00000049881) #13	pms1 (ENSSSAG00000049399) #14	mstnb (ENSSSAG00000049265) #15	ENSSSAG00000091097	LSS (ENSSSAG00000045554) #18	ENSSSAG00000121613 #19	YBEY (ENSSSAG00000045469) #20	USP37 (ENSSSAG00000044673) #21	CNOT9 (ENSSSAG00000044481) #22	PLCD4 (ENSSSAG00000042288) #23	ZNF142 (ENSSSAG00000042170) #24	BCS1 (ENSSSAG00000042144) #25	ENSSSAG00000041425 #26	vil1 (ENSSSAG00000033358)	ENSSSAG00000022772	ENSSSAG00000086387	ENSSSAG00000015780	agr1 (ENSSSAG00000015737)	traf3ip1 (ENSSSAG00000118564)	asb1 (ENSSSAG00000015679)	TWST2 (ENSSSAG00000015666)	hdac4 (ENSSSAG00000006508)	ENSSSAG00000092726	gjc4b (ENSSSAG00000059516)
Huchen	MODERN SPECIES	234	asnsd1 (ENSHHUG00000032968)	zgc:136439 (ENSHHUG00000032971)	ankar (ENSHHUG00000032980)	osgepl1 (ENSHHUG00000033040) #10	adat3 (ENSHHUG00000033054) #12	ormdl1 (ENSHHUG00000033064) #13	pms1 (ENSHHUG00000033079) #14	mstnb (ENSHHUG00000033085) #15	ENSHHUG00000033186 #16	ENSHHUG00000033190	lss (ENSHHUG00000033192) #18	MCM3AP (ENSHHUG00000033212) #19	ENSHHUG00000033234	ybey (ENSHHUG00000033242) #20	usp37 (ENSHHUG00000033257) #21	cnot9 (ENSHHUG00000033364) #22	PLCD4 (ENSHHUG00000033380) #23	ZNF142 (ENSHHUG00000034175) #24	bcs1l (ENSHHUG00000034182) #25	ENSHHUG00000034195 #26	zgc:66484 (ENSHHUG00000034208)	VIL1 (ENSHHUG00000034211)	ITGB2 (ENSHHUG00000034340)
Northern pike	MODERN SPECIES	15	asnsd1 (ENSELUG00000013854)	zgc:136439 (ENSELUG00000032874)	ankar (ENSELUG00000013809)	osgepl1 (ENSELUG00000013776) #10	adat3 (ENSELUG00000013736) #12	ormdl1 (ENSELUG00000013753) #13	pms1 (ENSELUG00000013725) #14	mstnb (ENSELUG00000013706) #15	ENSELUG00000013684 #16	hibch (ENSELUG00000013663) #17	ENSELUG00000025026	lss (ENSELUG00000013601) #18	ENSELUG00000000499 #19	ybey (ENSELUG00000013338) #20	usp37 (ENSELUG00000013425) #21	cnot9 (ENSELUG00000013305) #22	PLCD4 (ENSELUG00000013282) #23	ZNF142 (ENSELUG00000013266) #24	bcs1l (ENSELUG00000013256) #25	zgc:136333 (ENSELUG00000013221) #26	zgc:66484 (ENSELUG00000013108)	vil1 (ENSELUG00000013040)	ITGB2 (ENSELUG00000012969)	ADARB1 (ENSELUG00000012944)	agr3 (ENSELUG00000012848)	traf3ip1 (ENSELUG00000012760)	asb1 (ENSELUG00000012649)	ENSELUG00000033219	twist2 (ENSELUG00000012619)	hdac4 (ENSELUG00000012563)	IKZF2 (ENSELUG00000032332)
Euteleosteomorpha	ANCESTRAL SPECIES	140	ENSGT00390000013151.a.a.a	ENSGT00940000161997.a	ENSGT00940000160532.g	ENSGT00940000154486.b.a.a.b.e.a.b	ENSGT00940000154486.b.b.b	ENSGT00940000154486.b.a.a.b.e.b	ENSGT00940000154486.b.b.a.a	ENSGT00940000155311.B	ENSGT00530000063599.B	ENSGT00390000006330.a.a.b	ENSGT00390000010463.a.b.c.a ##8	ENSGT01050000244905.A.a ##7	ENSGT00940000167649	ENSGT00390000005581.a	ENSGT00390000001225.t ##22	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029
Acanthomorphata	ANCESTRAL SPECIES	141				ENSGT00940000163254	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT01030000234555.a.b.f.b	ENSGT00390000016929	ENSGT00940000155466.e.a	ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870	ENSGT01030000234765	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000167665	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b
Euacanthomorphacea	ANCESTRAL SPECIES	26	ENSGT01050000244823.d.b.a.b	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860	ENSGT00940000156365	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870	ENSGT01030000234765	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153	ENSGT00440000033720.a.a.b
Percomorphaceae	ANCESTRAL SPECIES	55	ENSGT01030000234614.A.l.b	ENSGT01050000244823.d.b.a.b	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860	ENSGT00940000156365	ENSGT00390000010543	ENSGT00940000155318.b.b	ENSGT01030000234635.a.b.a.b.a	ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153	ENSGT00440000033720.a.a.b
Percomorphaceae_B	ANCESTRAL SPECIES	22										ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153	ENSGT00440000033720.a.a.b
Ovalentaria	ANCESTRAL SPECIES	23										ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153	ENSGT00440000033720.a.a.b
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00940000153648.a	ENSGT01030000234555.b	ENSGT00940000166665	ENSGT00940000153309	ENSGT00390000016794.d	ENSGT01050000244848.A.b.b	ENSGT00950000183022.b	ENSGT00610000086518.b.b	ENSGT00940000165189	ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000168183	ENSGT00940000157622.a.a	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753
Pomacentridae	ANCESTRAL SPECIES	193										ENSGT00940000159870	ENSGT00940000159602	ENSGT00690000103830	ENSGT00940000159255	ENSGT00390000000447	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a
Pomacentridae_A	ANCESTRAL SPECIES	107	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00940000159870	ENSGT00940000159602	ENSGT00690000103830	ENSGT00940000159255	ENSGT00390000000447	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a
Amphiprion	ANCESTRAL SPECIES	130	ENSGT00940000156913.b.j.a	ENSGT00940000160811.c.b	ENSGT00390000014037.d	ENSGT00940000154242.a.c	ENSGT00390000005345	ENSGT01070000253766.C.o.b	ENSGT00940000158831	ENSGT00940000156406.a	ENSGT00940000153470.a.a.a.a	ENSGT00940000159870	ENSGT00940000159602	ENSGT00690000103830	ENSGT00940000159255	ENSGT00390000000447	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a
Clown anemonefish	MODERN SPECIES	3469			ENSAOCG00000016423	ENSAOCG00000016441	ENSAOCG00000016485	XKR6 (ENSAOCG00000001862)	enpp4 (ENSAOCG00000016514)	clic5a (ENSAOCG00000016540)	mgat5 (ENSAOCG00000016625)	RCAN1 (ENSAOCG00000001156)	ENSAOCG00000016689	ENSAOCG00000016710	runx1 (ENSAOCG00000016739)	ENSAOCG00000016751	ENSAOCG00000016803	cnot9 (ENSAOCG00000016846) ##22	ENSAOCG00000016899 ##23	slx9 (ENSAOCG00000001977)	adarb1a (ENSAOCG00000001169)	cep70 (ENSAOCG00000016992)	sowahcb (ENSAOCG00000017011)	vamp1a (ENSAOCG00000017028)	ENSAOCG00000001180	ENSAOCG00000001182	grap2a (ENSAOCG00000017139)	radil2a (ENSAOCG00000017170)	ENSAOCG00000017190
Orange clownfish	MODERN SPECIES	16	C1QL2 (ENSAPEG00000012569)	en1a (ENSAPEG00000012557)	ENSAPEG00000012504	ENSAPEG00000012490	ENSAPEG00000012355	XKR6 (ENSAPEG00000012311)	enpp4 (ENSAPEG00000012288)	clic5a (ENSAPEG00000012257)	mgat5 (ENSAPEG00000012172)	ENSAPEG00000012131	ENSAPEG00000012095	ENSAPEG00000012078	runx1 (ENSAPEG00000011997)	DONSON (ENSAPEG00000011848)	ENSAPEG00000011757	cnot9 (ENSAPEG00000011704) ##22	ENSAPEG00000011685 ##23	slx9 (ENSAPEG00000011677)	adarb1a (ENSAPEG00000011629)	cep70 (ENSAPEG00000011536)	sowahcb (ENSAPEG00000011503)	ENSAPEG00000011488	GAPDH (ENSAPEG00000011459)	ENSAPEG00000011443	MAP4K4 (ENSAPEG00000011232)	chst10 (ENSAPEG00000011160)	rpl31 (ENSAPEG00000011120)	HECW2 (ENSAPEG00000011093)	gtf3c3 (ENSAPEG00000011007)	dmd (ENSAPEG00000010447)	ENSAPEG00000010270
Spiny chromis	MODERN SPECIES	1093													runx1 (ENSAPOG00000020606)	ENSAPOG00000020620	ENSAPOG00000020684	cnot9 (ENSAPOG00000020746) ##22	ENSAPOG00000020998 ##23	slx9 (ENSAPOG00000021046)	adarb1a (ENSAPOG00000021275)	cep70 (ENSAPOG00000021352)	sowahcb (ENSAPOG00000021363)	ENSAPOG00000021381
Bicolor damselfish	MODERN SPECIES	886										RCAN1 (ENSSPAG00000003738)	ENSSPAG00000003713	ENSSPAG00000003699	runx1 (ENSSPAG00000003609)	DONSON (ENSSPAG00000003574)	ENSSPAG00000003543	cnot9 (ENSSPAG00000003506) ##22	ENSSPAG00000003366 ##23	ENSSPAG00000003331	adarb1a (ENSSPAG00000003299)
Cichlidae	ANCESTRAL SPECIES	51										ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000168183	ENSGT00940000157622.a.a	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753
Midas cichlid	MODERN SPECIES	585													ENSACIG00000024287	RCAN1 (ENSACIG00000024290)	ENSACIG00000024292	cnot9 (ENSACIG00000024293) ##22	ENSACIG00000024295 ##23	slx9 (ENSACIG00000024296)	adarb1a (ENSACIG00000024297)	cep70 (ENSACIG00000024298)	sowahcb (ENSACIG00000024300)	dhrsx (ENSACIG00000024301)
Atherinomorphae	ANCESTRAL SPECIES	47										ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153	ENSGT00940000169304
Cyprinodontiformes	ANCESTRAL SPECIES	66											ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153
Aplocheiloidei	ANCESTRAL SPECIES	174								ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000000447	ENSGT00940000159602	ENSGT00940000159870	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000168183
Turquoise killifish	MODERN SPECIES	1619	GYG2 (ENSNFUG00015009233)	ENSNFUG00015009305	ENSNFUG00015009445	PRKX (ENSNFUG00015009453)	ENSNFUG00015009467	nlgn4xa (ENSNFUG00015009479)	cep41 (ENSNFUG00015009529)	pudp (ENSNFUG00015009538)	runx1 (ENSNFUG00015009559)	ENSNFUG00015009602	ENSNFUG00015009621	ENSNFUG00015009629	URP2 (ENSNFUG00015009633)	CLIC6 (ENSNFUG00015009645)	RCAN1B (ENSNFUG00015009664)	RQCD1 (ENSNFUG00015009680) ##22	ENSNFUG00015009821 ##23	ENSNFUG00015010578	ENSNFUG00015010583	APG3L (ENSNFUG00015010599)	CARS2 (ENSNFUG00015010636)	ENSNFUG00015010684	GTF3C3 (ENSNFUG00015010693)	ENSNFUG00015011011	CHRM4A (ENSNFUG00015011027)	cryaa (ENSNFUG00015011042)	ENSNFUG00015011055	ankrd10a (ENSNFUG00015011073)	ENSNFUG00015011114	ENSNFUG00015011133	ENSNFUG00015011142
Mangrove rivulus	MODERN SPECIES	132	ENSKMAG00000011510	cab39l (ENSKMAG00000011414)	cdadc1 (ENSKMAG00000011381)	rcbtb1 (ENSKMAG00000011318)	FGF14 (ENSKMAG00000011283)	tubgcp3 (ENSKMAG00000011185)	ENSKMAG00000011159	ATP11A (ENSKMAG00000011106)	SOX1 (ENSKMAG00000011088)	arhgef7b (ENSKMAG00000010994)	ENSKMAG00000010829	ENSKMAG00000010754	zc3h13 (ENSKMAG00000010701)	ENSKMAG00000010672	ENSKMAG00000010629	cnot9 (ENSKMAG00000010565) ##22	ENSKMAG00000010505	ENSKMAG00000010470 ##23	slx9 (ENSKMAG00000010451)	adarb1a (ENSKMAG00000010426)	cep70 (ENSKMAG00000010395)	sowahcb (ENSKMAG00000010375)	AIFM2 (ENSKMAG00000010356)	ENSKMAG00000010342	ENSKMAG00000010325
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00940000153534.A	ENSGT00390000003758	ENSGT00940000163254	ENSGT01060000248575.D.c.b.a.a	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT01030000234555.a.b.f.b	ENSGT00390000016929	ENSGT00940000155466.e.a	ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000168183	ENSGT00940000163186	ENSGT00940000177894	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753
Percomorphaceae_D	ANCESTRAL SPECIES	23															ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153
Anabantaria	ANCESTRAL SPECIES	23															ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153	ENSGT00440000033720.a.a.b
Anabantoidei	ANCESTRAL SPECIES	23															ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153	ENSGT00440000033720.a.a.b
Climbing perch	MODERN SPECIES	11	ENSATEG00000014439	ENSATEG00000014434	ENSATEG00000014414	ENSATEG00000014379	ENSATEG00000028647	ENSATEG00000014346	ENSATEG00000014252	ENSATEG00000014215	ENSATEG00000014176	ENSATEG00000014144	ENSATEG00000026583	ENSATEG00000026007	ENSATEG00000014107	ENSATEG00000013779	ENSATEG00000013711	cnot9 (ENSATEG00000013696) ##22	ENSATEG00000013684 ##23	slx9 (ENSATEG00000026147)	adarb1a (ENSATEG00000013653)	cep70 (ENSATEG00000025864)	ENSATEG00000013636	dhrsx (ENSATEG00000013588)	cd99 (ENSATEG00000013440)	gyg2 (ENSATEG00000013132)	MXRA5 (ENSATEG00000028724)	PRKX (ENSATEG00000025575)	ENSATEG00000012902	nlgn4xa (ENSATEG00000012873)	pudp (ENSATEG00000012775)	ENSATEG00000012765	ENSATEG00000028001
Zig-zag eel	MODERN SPECIES	11											ENSMAMG00000026232	ENSMAMG00000026709	ENSMAMG00000025491	ENSMAMG00000000347	ENSMAMG00000000357	cnot9 (ENSMAMG00000000433) ##22	ENSMAMG00000000490 ##23	slx9 (ENSMAMG00000000551)	adarb1a (ENSMAMG00000000571)	cep70 (ENSMAMG00000000607)	ENSMAMG00000026913	ENSMAMG00000000692	cd99 (ENSMAMG00000000711)	gyg2 (ENSMAMG00000000743)	MXRA5 (ENSMAMG00000000776)	PRKX (ENSMAMG00000000832)	nlgn4xa (ENSMAMG00000000885)	pudp (ENSMAMG00000028232)	ENSMAMG00000003024	STS (ENSMAMG00000003049)	ANOS1 (ENSMAMG00000025695)
Carangaria	ANCESTRAL SPECIES	23															ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153
Carangaria_A	ANCESTRAL SPECIES	23															ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000168183	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b
Seriola	ANCESTRAL SPECIES	47	ENSGT00940000166136	ENSGT00390000012561.b.pb.b	ENSGT00950000183114.a.b.b	ENSGT00940000160639.a	ENSGT00390000013151.a.a.a	ENSGT00940000161997.a	ENSGT00940000154486.b.a.a.b.e.b	ENSGT00940000154486.b.b.a.a	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT01030000234555.a.b.f.b	ENSGT00390000016929	ENSGT00940000155466.e.a	ENSGT00730000111141	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153	ENSGT00440000033720.a.a.b
Yellowtail amberjack	MODERN SPECIES	3147	ENSSLDG00000012103	ENSSLDG00000012138	sh3bp4a (ENSSLDG00000012152)	s100b (ENSSLDG00000012175)	ENSSLDG00000012183	ahr1b (ENSSLDG00000012205)	tmem47 (ENSSLDG00000012245)	ENSSLDG00000012286	dmd (ENSSLDG00000012633)	ENSSLDG00000013385	gtf3c3 (ENSSLDG00000013417)	ENSSLDG00000013474	ENSSLDG00000013504	ENSSLDG00000013582	ENSSLDG00000013596	cnot9 (ENSSLDG00000013620) ##22	ENSSLDG00000013642 ##23	slx9 (ENSSLDG00000013668)	adarb1a (ENSSLDG00000013681)	cep70 (ENSSLDG00000013714)	sowahcb (ENSSLDG00000013778)	dhrsx (ENSSLDG00000013811)	cd99 (ENSSLDG00000013853)	gyg2 (ENSSLDG00000014009)	MXRA5 (ENSSLDG00000014480)	PRKX (ENSSLDG00000014506)	nlgn4xa (ENSSLDG00000014531)	pudp (ENSSLDG00000014549)	ENSSLDG00000014573	STS (ENSSLDG00000014588)	anos1a (ENSSLDG00000014603)
Greater amberjack	MODERN SPECIES	7	ENSSDUG00000013396	bzw1a (ENSSDUG00000013408)	aox5 (ENSSDUG00000013452)	AOX1 (ENSSDUG00000013779)	sh3bp4a (ENSSDUG00000015477)	s100b (ENSSDUG00000015497)	ENSSDUG00000015503	ahr1b (ENSSDUG00000015515)	tmem47 (ENSSDUG00000015528)	DMD (ENSSDUG00000015736)	ENSSDUG00000018370	gtf3c3 (ENSSDUG00000018401)	HECW2 (ENSSDUG00000018483)	ENSSDUG00000018550	ENSSDUG00000018596	cnot9 (ENSSDUG00000018622) ##22	ENSSDUG00000018654 ##23	slx9 (ENSSDUG00000018677)	adarb1a (ENSSDUG00000018690)	cep70 (ENSSDUG00000018713)	sowahcb (ENSSDUG00000018751)	dhrsx (ENSSDUG00000018766)	cd99 (ENSSDUG00000018782)	gyg2 (ENSSDUG00000018811)	MXRA5 (ENSSDUG00000018841)	PRKX (ENSSDUG00000018892)	nlgn4xa (ENSSDUG00000019018)	pudp (ENSSDUG00000020114)	ENSSDUG00000020129	STS (ENSSDUG00000020141)	anos1a (ENSSDUG00000020157)
Barramundi perch	MODERN SPECIES	624												ENSLCAG00010013722	ENSLCAG00010013718	ENSLCAG00010013716	ENSLCAG00010013711	cnot9 (ENSLCAG00010013701) ##22	ENSLCAG00010013632 ##23
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00940000153534.A	ENSGT00390000003758	ENSGT00940000163254	ENSGT01060000248575.D.c.b.a.a	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT01030000234555.a.b.f.b	ENSGT00390000016929	ENSGT00940000155466.e.a	ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153
Tetraodontidae	ANCESTRAL SPECIES	22	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k	ENSGT00940000162479.a	ENSGT00940000157849.n.c	ENSGT00940000157872	ENSGT00940000156984.a.a	ENSGT00940000153981.A	ENSGT01030000234765	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a.xb	ENSGT00940000156607.a.a.yb.b	ENSGT00390000014753	ENSGT00940000165158.b
Fugu	MODERN SPECIES	20	ENSTRUG00000028934	ENSTRUG00000021847	fam184aa (ENSTRUG00000017364)	ENSTRUG00000017359	ENSTRUG00000017357	ENSTRUG00000028094	ENSTRUG00000017337	arhgef7b (ENSTRUG00000017333)	SOX1 (ENSTRUG00000021237)	atp11a (ENSTRUG00000017330)	tubgcp3 (ENSTRUG00000017326)	FGF14 (ENSTRUG00000030093)	GPR180 (ENSTRUG00000007281)	ENSTRUG00000020625	ENSTRUG00000020502	cnot9 (ENSTRUG00000007110) ##22	PLCD4 (ENSTRUG00000006810) ##23	slx9 (ENSTRUG00000021414)	adarb1a (ENSTRUG00000006297)	cep70 (ENSTRUG00000005903)	sowahcb (ENSTRUG00000028799)	ZBED1 (ENSTRUG00000027311)	cd99 (ENSTRUG00000005337)	gyg2 (ENSTRUG00000004929)	ENSTRUG00000029616	MXRA5 (ENSTRUG00000004815)	PRKX (ENSTRUG00000019829)	ENSTRUG00000022776	ENSTRUG00000027664	ENSTRUG00000026551	ENSTRUG00000027794
Tetraodon	MODERN SPECIES	18	ENSTNIG00000001981	ENSTNIG00000014514	SLC5A3 (ENSTNIG00000014513)	ENSTNIG00000014512	fam184aa (ENSTNIG00000014511)	ENSTNIG00000014510	ENSTNIG00000014509	ENSTNIG00000014508	arhgef7b (ENSTNIG00000014507)	SOX1 (ENSTNIG00000012196)	ATP11A (ENSTNIG00000014506)	tubgcp3 (ENSTNIG00000014505)	ENSTNIG00000014504	ENSTNIG00000014503	GPR180 (ENSTNIG00000014502)	cnot9 (ENSTNIG00000014501) ##22	PLCD4 (ENSTNIG00000014500) ##23	slx9 (ENSTNIG00000014499)	adarb1a (ENSTNIG00000014498)	cep70 (ENSTNIG00000014497)	ENSTNIG00000014496	dhrsx (ENSTNIG00000014495)	cd99 (ENSTNIG00000014494)	gyg2 (ENSTNIG00000014493)	MXRA5 (ENSTNIG00000014492)	PRKX (ENSTNIG00000014491)	ENSTNIG00000014489	pudp (ENSTNIG00000014488)	ENSTNIG00000014487	STS (ENSTNIG00000014486)	anos1a (ENSTNIG00000014485)
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00940000153534.A	ENSGT00390000003758	ENSGT00940000163254	ENSGT01060000248575.D.c.b.a.a	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT01030000234555.a.b.f.b	ENSGT00390000016929	ENSGT00940000155466.e.a	ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000163186	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000162022
Ballan wrasse	MODERN SPECIES	434								nlgn4xa (ENSLBEG00000017271)	PRKX (ENSLBEG00000017303)	MXRA5 (ENSLBEG00000017327)	gyg2 (ENSLBEG00000017431)	cd99 (ENSLBEG00000017580)	dhrsx (ENSLBEG00000017609)	ZBED1 (ENSLBEG00000017623)	ENSLBEG00000017646	cnot9 (ENSLBEG00000017715) ##22	ENSLBEG00000017882 ##23	slx9 (ENSLBEG00000017930)	adarb1a (ENSLBEG00000017967)	cep70 (ENSLBEG00000018022)	sowahcb (ENSLBEG00000018070)	ENSLBEG00000018101	ENSLBEG00000018159
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00940000153534.A	ENSGT00390000003758	ENSGT00940000163254	ENSGT01060000248575.D.c.b.a.a	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT01030000234555.a.b.f.b	ENSGT00390000016929	ENSGT00940000155466.e.a	ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000162022
Eupecaria_C	ANCESTRAL SPECIES	33	ENSGT00940000164501.a.a.b.a	ENSGT00530000063480.a	ENSGT00390000008096.B.e.b	ENSGT00940000160342.g.a	ENSGT00940000165242.d	ENSGT00530000063669.b.b	ENSGT00390000002403	ENSGT00950000183302	ENSGT00940000158367	ENSGT00940000161679.b	ENSGT00940000154443.e	ENSGT00940000159196	ENSGT00940000153981.A	ENSGT01030000234765	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000162022
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	37	ENSGT00940000164501.a.a.b.a	ENSGT00530000063480.a	ENSGT00390000008096.B.e.b	ENSGT00940000160342.g.a	ENSGT00940000165242.d	ENSGT00530000063669.b.b	ENSGT00390000002403	ENSGT00950000183302	ENSGT00940000158367	ENSGT00940000161679.b	ENSGT00940000154443.e	ENSGT00940000159196	ENSGT00940000153981.A	ENSGT01030000234765	ENSGT00940000164013	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000164022	ENSGT00940000163186	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000162022	ENSGT00940000161153
European seabass	MODERN SPECIES	15	ENSDLAG00005025995	ENSDLAG00005025996	ENSDLAG00005025997	ENSDLAG00005025999	ENSDLAG00005026004	ENSDLAG00005026014	ENSDLAG00005026019	ENSDLAG00005026021	ENSDLAG00005031339	ENSDLAG00005026056	ENSDLAG00005026143	ENSDLAG00005026144	ENSDLAG00005031991	ENSDLAG00005026146	ENSDLAG00005026149	ENSDLAG00005030529 ##22	ENSDLAG00005026184 ##23	cep70 (ENSDLAG00005026219)	ENSDLAG00005026222	slx9 (ENSDLAG00005026231)	ENSDLAG00005026232	ENSDLAG00005032574	ENSDLAG00005026406	gyg2 (ENSDLAG00005026240)	ENSDLAG00005034998	PRKX (ENSDLAG00005026244)	ENSDLAG00005026248	ENSDLAG00005002707	ENSDLAG00005027855	ENSDLAG00005034318	ENSDLAG00005031624
Large yellow croaker	MODERN SPECIES	480														ENSLCRG00005022450	ENSLCRG00005022447	cnot9 (ENSLCRG00005022444) ##22	ENSLCRG00005022354 ##23	slx9 (ENSLCRG00005022336)	adarb1a (ENSLCRG00005022316)	cep70 (ENSLCRG00005022311)	sowahcb (ENSLCRG00005022309)	dhrsx (ENSLCRG00005022308)	ZBED1 (ENSLCRG00005022307)	ZBED1 (ENSLCRG00005022301)	cd99 (ENSLCRG00005022298)	gyg2 (ENSLCRG00005022296)	MXRA5 (ENSLCRG00005022295)	ENSLCRG00005022293	tipin (ENSLCRG00005022289)	lctla (ENSLCRG00005022287)	crybgx (ENSLCRG00005022285)
Gilthead seabream	MODERN SPECIES	16	abat (ENSSAUG00010006554)	CRYGS (ENSSAUG00010008664)	ENSSAUG00010008666	fam184aa (ENSSAUG00010008675)	ENSSAUG00010008751	ENSSAUG00010008752	ENSSAUG00010008760	ENSSAUG00010008766	ENSSAUG00010008767	slc5a3a (ENSSAUG00010008769)	ENSSAUG00010008780	ENSSAUG00010009272	GPR180 (ENSSAUG00010009278)	ENSSAUG00010009288	ENSSAUG00010009294	cnot9 (ENSSAUG00010009307) ##22	ENSSAUG00010009325 ##23	slx9 (ENSSAUG00010009921)	adarb1a (ENSSAUG00010009927)	cep70 (ENSSAUG00010010027)	odad3 (ENSSAUG00010010029)	sowahcb (ENSSAUG00010010031)	CACNB4 (ENSSAUG00010010040)	rcn3 (ENSSAUG00010010323)	nosip (ENSSAUG00010010326)	ENSSAUG00010010350	ENSSAUG00010010353	tspan4b (ENSSAUG00010010356)	ENSSAUG00010010361	SLITRK2 (ENSSAUG00010010363)	ENSSAUG00010010365
Pinecone sodierfish	MODERN SPECIES	11	en1a (ENSMMDG00005003937)	ENSMMDG00005003941	ENSMMDG00005003950	ENSMMDG00005003968	ENSMMDG00005003973	SLC5A3 (ENSMMDG00005004000)	ENSMMDG00005005260	ENSMMDG00005012283	GPR180 (ENSMMDG00005012286)	ENSMMDG00005012288	ENSMMDG00005012289	ENSMMDG00005012299	runx1 (ENSMMDG00005012382)	DONSON (ENSMMDG00005012490)	ENSMMDG00005012493	cnot9 (ENSMMDG00005012494) ##22	ENSMMDG00005012527 ##23	slx9 (ENSMMDG00005013812)	adarb1a (ENSMMDG00005013819)	ENSMMDG00005013927	DDRGK1 (ENSMMDG00005014127)	ENSMMDG00005014129	ddx4 (ENSMMDG00005014160)	UBE3A (ENSMMDG00005016321)	CNGA3 (ENSMMDG00005016743)	kpnb3 (ENSMMDG00005016767)	SEMA5B (ENSMMDG00005016835)	CACNB4 (ENSMMDG00005016911)	etv5b (ENSMMDG00005019229)	tmem237b (ENSMMDG00005019232)	MPP4 (ENSMMDG00005019240)
Euteleosteomorpha	ANCESTRAL SPECIES	140	ENSGT00940000160639.a	ENSGT00390000013151.a.a.a	ENSGT00940000161997.a	ENSGT00940000160532.g	ENSGT00940000154486.b.a.a.b.e.a.b	ENSGT00940000154486.b.b.b	ENSGT00940000154486.b.a.a.b.e.b	ENSGT00940000154486.b.b.a.a	ENSGT00940000155311.B	ENSGT00530000063599.B	ENSGT00390000006330.a.a.b	ENSGT00390000010463.a.b.c.a ##8	ENSGT01050000244905.A.a ##7	ENSGT00940000167649	ENSGT00390000005581.a	ENSGT00390000001225.t ##22	ENSGT00390000001225.s.b ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029
Protacanthopterygii	ANCESTRAL SPECIES	27	ENSGT00390000012561.b.pb.b	ENSGT00950000183114.a.b.b	ENSGT00940000160639.b.a.b.b.a	ENSGT00390000013151.a.a.a	ENSGT00940000161997.a	ENSGT00940000160532.g	ENSGT00940000154486.b.a.a.b.e.a.b	ENSGT00940000154486.b.b.b.a	ENSGT00940000155311.B	ENSGT00530000063599.B.m	ENSGT00390000006330.a.a.b	ENSGT00390000010463.a.b.c.a ##8	ENSGT01050000244905.A.a ##7	ENSGT00940000167649	ENSGT00390000005581.a	ENSGT00390000001225.t ##22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.d	ENSGT00390000009029	ENSGT00940000155238	ENSGT00950000183003.a.a.b.c.a	ENSGT00940000168183	ENSGT00940000163186	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00390000002871	ENSGT00940000159942.a.c.a	ENSGT00940000159832	ENSGT00390000014753
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	747													ENSGT00940000167649.b	ENSGT01050000244905.A.a.n.a.b ##7	ENSGT00390000005581.a.e	ENSGT00390000001225.t.a ##22	ENSGT00940000156180.e.e ##23	ENSGT00390000015709.d	ENSGT00940000155992.d.b	ENSGT00390000009029.v	ENSGT00940000155238.`b.b	ENSGT00950000183003.a.a.b.c.a.e	ENSGT00940000164022.g.b
Huchen	MODERN SPECIES	13									ENSHHUG00000031115	mfsd6a (ENSHHUG00000031071)	nab1a (ENSHHUG00000031061)	glsa (ENSHHUG00000030927) ##8	ENSHHUG00000030848	stat1a (ENSHHUG00000029325) ##7	ftcd (ENSHHUG00000029280)	cnot9 (ENSHHUG00000029264) ##22	ENSHHUG00000029244 ##23	slx9 (ENSHHUG00000029182)	ADARB1 (ENSHHUG00000029164)	cep70 (ENSHHUG00000029149)	septin10 (ENSHHUG00000029076)	sowahcb (ENSHHUG00000029068)	dhrsx (ENSHHUG00000029053)	ZBED1 (ENSHHUG00000029050)	cd99 (ENSHHUG00000029003)	MXRA5 (ENSHHUG00000028990)	PRKX (ENSHHUG00000028980)	pudp (ENSHHUG00000028978)	nlgn4xa (ENSHHUG00000028918)	ENSHHUG00000028911	STS (ENSHHUG00000028879)
Salmoninae_a	ANCESTRAL SPECIES	49			ENSGT00940000160639.b.a.b.b.a.a	ENSGT00390000013151.a.a.a.c	ENSGT00940000161997.a.i	ENSGT00940000160532.g.g	ENSGT00940000154486.b.a.a.b.e.a.b.f	ENSGT00940000154486.b.b.b.a.a	ENSGT00530000063599.B.m.b	ENSGT00390000006330.a.a.b.d	ENSGT00390000010463.a.b.c.a.e ##8	ENSGT01050000244905.A.a.m ##7	ENSGT00940000167649.b	ENSGT01050000244905.A.a.n.a.b ##7	ENSGT00390000005581.a.e	ENSGT00390000001225.t.a ##22	ENSGT00940000156180.e.e ##23	ENSGT00390000015709.d	ENSGT00940000155992.d.b	ENSGT00390000009029.v	ENSGT00940000155238.`b.b	ENSGT00950000183003.a.a.b.c.a.e	ENSGT00940000164022.g.b	ENSGT00940000154344.b.g	ENSGT00940000159942.a.c.a.l	ENSGT00940000159832.l	ENSGT00390000014753.a	ENSGT00940000156607.a.a.mb.b	ENSGT00940000165158.b	ENSGT00940000161153.b	ENSGT00440000033720.a.a.b.c
Salmo	ANCESTRAL SPECIES	48	ENSGT00940000167103.c	ENSGT00940000166136.d	ENSGT00390000012561.b.pb.b.d	ENSGT00940000160639.b.a.b.b.a.a	ENSGT00390000013151.a.a.a.c	ENSGT00940000161997.a.i	ENSGT00940000160532.g.g	ENSGT00940000154486.b.a.a.b.e.a.b.f	ENSGT00940000154486.b.b.b.a.a	ENSGT00530000063599.B.m.b	ENSGT00390000006330.a.a.b.d	ENSGT00390000010463.a.b.c.a.e ##8	ENSGT01050000244905.A.a.m ##7	ENSGT01050000244905.A.a.n.a.b ##7	ENSGT00390000005581.a.e	ENSGT00390000001225.t.a ##22	ENSGT00940000156180.e.e ##23	ENSGT00390000015709.d	ENSGT00940000155992.d.b	ENSGT00390000009029.v	ENSGT00940000155238.`b.b	ENSGT00950000183003.a.a.b.c.a.e	ENSGT00940000164022.g.b	ENSGT00940000154344.b.g	ENSGT00390000002871	ENSGT00940000159942.a.c.a.l	ENSGT00940000159832.l	ENSGT00390000014753.a	ENSGT00940000156607.a.a.mb.b	ENSGT00940000165158.b	ENSGT00940000161153.b
River trout	MODERN SPECIES	36	ARL4C (ENSSTUG00000050415)	sh3bp4a (ENSSTUG00000050422)	s100b (ENSSTUG00000050427)	ENSSTUG00000050431	ahr2 (ENSSTUG00000050438)	ENSSTUG00000050442	ahr1b (ENSSTUG00000050452)	ENSSTUG00000050473	ENSSTUG00000050477	mfsd6a (ENSSTUG00000050482)	nab1a (ENSSTUG00000050485)	glsa (ENSSTUG00000050506) ##8	ENSSTUG00000050625 ##7	stat1a (ENSSTUG00000050679) ##7	ftcd (ENSSTUG00000051044)	cnot9 (ENSSTUG00000051048) ##22	ENSSTUG00000051049 ##23	slx9 (ENSSTUG00000051051)	ADARB1 (ENSSTUG00000051056)	cep70 (ENSSTUG00000051058)	ENSSTUG00000051064	sowahcb (ENSSTUG00000051086)	dhrsx (ENSSTUG00000051087)	cd99 (ENSSTUG00000051089)	MXRA5 (ENSSTUG00000000708)	PRKX (ENSSTUG00000000714)	pudp (ENSSTUG00000000723)	nlgn4xa (ENSSTUG00000000739)	ENSSTUG00000000821	STS (ENSSTUG00000000835)	anos1a (ENSSTUG00000000867)
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000104403	bzw1a (ENSSSAG00000108291)	aox5 (ENSSSAG00000058981)	ENSSSAG00000087803	sh3bp4a (ENSSSAG00000069340)	ENSSSAG00000069404	ahr2d (ENSSSAG00000071319)	ahr1b (ENSSSAG00000071494)	ENSSSAG00000071938	mfsd6a (ENSSSAG00000071941)	nab1a (ENSSSAG00000087426)	glsa (ENSSSAG00000072005) ##8	ENSSSAG00000073463	stat1a (ENSSSAG00000073567) ##7	ftcd (ENSSSAG00000076813)	cnot9 (ENSSSAG00000076829) ##22	ENSSSAG00000076833 ##23	ENSSSAG00000058191	cep70 (ENSSSAG00000076962)	ENSSSAG00000058588	ENSSSAG00000089233	ENSSSAG00000096164	cd99 (ENSSSAG00000077846)	ENSSSAG00000082674	ENSSSAG00000077880	ENSSSAG00000105329	ENSSSAG00000121769	ENSSSAG00000077900	ENSSSAG00000077914	pnpla4 (ENSSSAG00000077984)	STS (ENSSSAG00000077989)
Oncorhynchus	ANCESTRAL SPECIES	49				ENSGT00940000160639.b.a.b.b.a.a	ENSGT00390000013151.a.a.a.c	ENSGT00940000161997.a.i	ENSGT00940000160532.g.g	ENSGT00940000154486.b.a.a.b.e.a.b.f	ENSGT00940000154486.b.b.b.a.a	ENSGT00530000063599.B.m.b	ENSGT00390000006330.a.a.b.d	ENSGT00390000010463.a.b.c.a.e ##8	ENSGT00940000167649.b	ENSGT01050000244905.A.a.n.a.b ##7	ENSGT00390000005581.a.e	ENSGT00390000001225.t.a ##22	ENSGT00940000156180.e.e ##23	ENSGT00390000015709.d	ENSGT00940000155992.d.b	ENSGT00390000009029.v	ENSGT00940000155238.`b.b	ENSGT00950000183003.a.a.b.c.a.e	ENSGT00940000164022.g.b	ENSGT00940000154344.b.g	ENSGT00940000159942.a.c.a.l	ENSGT00940000159832.l	ENSGT00390000014753.a	ENSGT00940000156607.a.a.mb.b.a	ENSGT00940000165158.b	ENSGT00940000161153.b	ENSGT00440000033720.a.a.b.c
Rainbow trout	MODERN SPECIES	9	aox5 (ENSOMYG00000021465)	ENSOMYG00000020913	sh3bp4a (ENSOMYG00000020902)	s100b (ENSOMYG00000020886)	ENSOMYG00000020864	ahr2 (ENSOMYG00000020725)	ENSOMYG00000020677	ahr1b (ENSOMYG00000020656)	mfsd6a (ENSOMYG00000020644)	nab1a (ENSOMYG00000020636)	glsa (ENSOMYG00000020604) ##8	ENSOMYG00000069747	ENSOMYG00000020539	ENSOMYG00000020320 ##7	ftcd (ENSOMYG00000020057)	cnot9 (ENSOMYG00000020025) ##22	ENSOMYG00000070437 ##23	slx9 (ENSOMYG00000020014)	ENSOMYG00000019985	cep70 (ENSOMYG00000019938)	ENSOMYG00000019892	ENSOMYG00000019867	dhrsx (ENSOMYG00000019864)	cd99 (ENSOMYG00000019853)	ENSOMYG00000019828	ENSOMYG00000066841	ENSOMYG00000019812	ENSOMYG00000019805	ENSOMYG00000019624	ENSOMYG00000019532	STS (ENSOMYG00000019513)
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00390000012561.b.pb.b.d	ENSGT00950000183114.a.b.b	ENSGT00940000160639.b.a.b.b.a.a	ENSGT00390000013151.a.a.a.c	ENSGT00940000161997.a.i	ENSGT00940000160532.g.g	ENSGT00940000154486.b.a.a.b.e.a.b.f	ENSGT00940000154486.b.b.b.a.a	ENSGT00530000063599.B.m.b	ENSGT00530000063599.B.m.a.b	ENSGT00390000006330.a.a.b.d	ENSGT00390000010463.a.b.c.a.e ##8	ENSGT00940000167649.b	ENSGT01050000244905.A.a.n.a.b ##7	ENSGT00390000005581.a.e	ENSGT00390000001225.t.a ##22	ENSGT00390000015709.d	ENSGT00940000155992.d.b	ENSGT00390000009029.v	ENSGT00940000155238.`b.b	ENSGT00950000183003.a.a.b.c.a.e	ENSGT00940000164022.g.b	ENSGT00940000154344.b.g	ENSGT00940000159942.a.c.a.l	ENSGT00940000159832.l	ENSGT00990000210900	ENSGT00940000156607.a.a.mb.b.a	ENSGT00940000165158.b	ENSGT00940000161153.b	ENSGT00440000033720.a.a.b.c	ENSGT01000000215583.a.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	5	ENSOTSG00005043572	bzw1a (ENSOTSG00005043571)	aox5 (ENSOTSG00005042834)	ARL4C (ENSOTSG00005042816)	sh3bp4a (ENSOTSG00005042815)	s100b (ENSOTSG00005042814)	ENSOTSG00005042813	ahr2 (ENSOTSG00005042811)	ENSOTSG00005042810	ahr1b (ENSOTSG00005042808)	mfsd6a (ENSOTSG00005042807)	nab1a (ENSOTSG00005042806)	glsa (ENSOTSG00005042156) ##8	stat1a (ENSOTSG00005035552) ##7	ftcd (ENSOTSG00005035320)	cnot9 (ENSOTSG00005035311) ##22	slx9 (ENSOTSG00005035306)	ADARB1 (ENSOTSG00005035206)	cep70 (ENSOTSG00005035199)	ENSOTSG00005035149	sowahcb (ENSOTSG00005035148)	dhrsx (ENSOTSG00005035147)	ENSOTSG00005035146	ENSOTSG00005035145	MXRA5 (ENSOTSG00005035144)	ENSOTSG00005035143	ENSOTSG00005035142	nlgn4xa (ENSOTSG00005034500)	ENSOTSG00005034496	ENSOTSG00005034495	anos1a (ENSOTSG00005034492)
Chinook salmon	MODERN SPECIES	31	aox5 (ENSOTSG00005024759)	ARL4C (ENSOTSG00005027585)	sh3bp4a (ENSOTSG00005027586)	s100b (ENSOTSG00005027588)	ENSOTSG00005027591	ahr2 (ENSOTSG00005027595)	ahr1b (ENSOTSG00005027603)	ENSOTSG00005027606	mfsd6a (ENSOTSG00005027610)	nab1a (ENSOTSG00005027616)	glsa (ENSOTSG00005019550) ##8	ENSOTSG00005023358	stat1a (ENSOTSG00005023370) ##7	ftcd (ENSOTSG00005023870)	ENSOTSG00005024390	cnot9 (ENSOTSG00005024392) ##22	slx9 (ENSOTSG00005024393)	ADARB1 (ENSOTSG00005024395)	cep70 (ENSOTSG00005024396)	ENSOTSG00005024397	sowahcb (ENSOTSG00005024415)	cd99 (ENSOTSG00005024418)	MXRA5 (ENSOTSG00005024419)	PRKX (ENSOTSG00005024421)	ENSOTSG00005024423	nlgn4xa (ENSOTSG00005024424)	ahr2 (ENSOTSG00005024967)	ENSOTSG00005024972	s100b (ENSOTSG00005024974)	sh3bp4a (ENSOTSG00005024975)	ARL4C (ENSOTSG00005024981)
Coho salmon	MODERN SPECIES	7	ENSOKIG00005035046	bzw1a (ENSOKIG00005035073)	aox5 (ENSOKIG00005037375)	ENSOKIG00005050768	S100B (ENSOKIG00005050770)	ARL4C (ENSOKIG00005050771)	sh3bp4a (ENSOKIG00005050774)	ENSOKIG00005050777	ahr2 (ENSOKIG00005050781)	ahr1b (ENSOKIG00005050793)	mfsd6a (ENSOKIG00005050799)	nab1a (ENSOKIG00005050800)	glsa (ENSOKIG00005050832) ##8	ENSOKIG00005050878 ##7	ftcd (ENSOKIG00005050884)	cnot9 (ENSOKIG00005050886) ##22	slx9 (ENSOKIG00005050888)	ADARB1 (ENSOKIG00005050894)	cep70 (ENSOKIG00005050898)	ENSOKIG00005050905	SOWAHC (ENSOKIG00005050912)	dhrsx (ENSOKIG00005050914)	cd99 (ENSOKIG00005050915)	MXRA5 (ENSOKIG00005050917)	PRKX (ENSOKIG00005050918)	ENSOKIG00005050919	nlgn4xa (ENSOKIG00005050923)	ENSOKIG00005050925	ENSOKIG00005050926	ENSOKIG00005050929	ANOS1 (ENSOKIG00005050932)
Salmoninae	ANCESTRAL SPECIES	512											ENSGT00390000010463.a.b.c.a.f ##8	ENSGT01050000244905.A.a.n.b ##7	ENSGT00940000167649.a	ENSGT01050000244905.A.a.n.a.a ##7	ENSGT00390000005581.a.f	ENSGT00390000001225.t.b ##22	ENSGT00940000156180.e.f ##23	ENSGT00390000015709.c	ENSGT00940000155992.d.a	ENSGT00390000009029.u	ENSGT00940000155238.`b.a	ENSGT00950000183003.a.a.b.c.a.f	ENSGT00940000164022.g.a	ENSGT00940000154344.b.h	ENSGT00940000161628	ENSGT00390000002871	ENSGT00940000159942.a.c.a.k	ENSGT00940000159832.k	ENSGT00390000014753.b	ENSGT00940000156607.a.a.mb.a
Salmoninae_a	ANCESTRAL SPECIES	66	ENSGT00940000160639.b.a.b.b.a.b	ENSGT00390000013151.a.a.a.d	ENSGT00940000161997.a.j	ENSGT00940000160532.g.h	ENSGT00940000154486.b.a.a.b.e.a.b.e	ENSGT00940000154486.b.b.b.a.b	ENSGT00940000155311.B	ENSGT00530000063599.B.m.a	ENSGT00390000006330.a.a.b.c	ENSGT00940000165672.r	ENSGT00390000010463.a.b.c.a.f ##8	ENSGT01050000244905.A.a.n.b ##7	ENSGT00940000167649.a	ENSGT01050000244905.A.a.n.a.a ##7	ENSGT00390000005581.a.f	ENSGT00390000001225.t.b ##22	ENSGT00940000156180.e.f ##23	ENSGT00390000015709.c	ENSGT00940000155992.d.a	ENSGT00390000009029.u	ENSGT00940000155238.`b.a	ENSGT00950000183003.a.a.b.c.a.f	ENSGT00940000164022.g.a	ENSGT00940000163186	ENSGT00940000154344.b.h	ENSGT00940000161628	ENSGT00940000159942.a.c.a.k	ENSGT00940000159832.k	ENSGT00390000014753.b	ENSGT00940000156607.a.a.mb.a	ENSGT00390000002871
Salmo	ANCESTRAL SPECIES	41	ENSGT00940000161997.a.j	ENSGT00940000160532.g.h	ENSGT00940000154486.b.a.a.b.e.a.b.e	ENSGT00940000169027.c.a	ENSGT00940000153773.a.b	ENSGT00940000154486.b.b.b.a.b	ENSGT00940000155311.B	ENSGT00530000063599.B.m.a	ENSGT00390000006330.a.a.b.c	ENSGT00940000165672.r	ENSGT00390000010463.a.b.c.a.f ##8	ENSGT01050000244905.A.a.n.b.a ##7	ENSGT01050000244905.A.a.n.b.b ##7	ENSGT00940000167649.a	ENSGT00390000005581.a.f	ENSGT00390000001225.t.b ##22	ENSGT00940000156180.e.f ##23	ENSGT00390000015709.c	ENSGT00940000155992.d.a	ENSGT00390000009029.u	ENSGT00940000155238.`b.a	ENSGT00950000183003.a.a.b.c.a.f	ENSGT00940000164022.g.a	ENSGT00940000154344.b.h	ENSGT00940000161628	ENSGT00940000159942.a.c.a.k	ENSGT00940000159832.k	ENSGT00390000014753.b	ENSGT00940000156607.a.a.mb.a	ENSGT01060000249735	ENSGT00940000161153.a
Atlantic salmon	MODERN SPECIES	8	S100B (ENSSSAG00000040846)	ENSSSAG00000040976	ahr2g (ENSSSAG00000045517)	ENSSSAG00000122068	ahr1b (ENSSSAG00000088295)	ENSSSAG00000045960	ENSSSAG00000045973	mfsd6a (ENSSSAG00000046008)	nab1a (ENSSSAG00000082005)	ENSSSAG00000046045	glsa (ENSSSAG00000046133) ##8	stat1a (ENSSSAG00000102446) ##7	stat1a (ENSSSAG00000056374) ##7	ENSSSAG00000056556	ftcd (ENSSSAG00000056562)	cnot9 (ENSSSAG00000056588) ##22	ENSSSAG00000093879	ENSSSAG00000056655 ##23	cu070 (ENSSSAG00000111094)	ENSSSAG00000076949	cep70 (ENSSSAG00000058525)	ENSSSAG00000076980	ENSSSAG00000059284	dhrsx (ENSSSAG00000059294)	cd99 (ENSSSAG00000059521)	gyg2 (ENSSSAG00000059557)	ENSSSAG00000083022	ENSSSAG00000085889	ENSSSAG00000059684	ENSSSAG00000059730	ENSSSAG00000061329
River trout	MODERN SPECIES	32	sh3bp4a (ENSSTUG00000032651)	s100b (ENSSTUG00000032637)	ENSSTUG00000032602	ahr2 (ENSSTUG00000032386)	ENSSTUG00000032363	ENSSTUG00000032334	ahr1b (ENSSTUG00000032193)	ENSSTUG00000032145	mfsd6a (ENSSTUG00000032104)	ENSSTUG00000032080	glsa (ENSSTUG00000028542) ##8	stat1a (ENSSTUG00000027560) ##7	stat1a (ENSSTUG00000025375) ##7	ENSSTUG00000025302	ftcd (ENSSTUG00000025218)	cnot9 (ENSSTUG00000025163) ##22	ENSSTUG00000022817 ##23	slx9 (ENSSTUG00000022681)	ADARB1 (ENSSTUG00000022639)	cep70 (ENSSTUG00000048948)	ENSSTUG00000048846	sowahcb (ENSSTUG00000048827)	dhrsx (ENSSTUG00000048810)	cd99 (ENSSTUG00000048772)	gyg2 (ENSSTUG00000048768)	zgc:153142 (ENSSTUG00000048765)	MXRA5 (ENSSTUG00000048742)	ENSSTUG00000048723	pudp (ENSSTUG00000048715)	nlgn4xa (ENSSTUG00000048619)	ENSSTUG00000048604
Oncorhynchus	ANCESTRAL SPECIES	43	ENSGT00940000160639.b.a.b.b.a.b	ENSGT00390000013151.a.a.a.d	ENSGT00940000161997.a.j	ENSGT00940000160532.g.h	ENSGT00940000154486.b.a.a.b.e.a.b.e	ENSGT00940000154486.b.b.b.a.b	ENSGT00940000155311.B	ENSGT00530000063599.B.m.a.a	ENSGT00390000006330.a.a.b.c	ENSGT00940000165672.r	ENSGT00390000010463.a.b.c.a.f ##8	ENSGT01050000244905.A.a.n.b ##7	ENSGT00940000167649.a	ENSGT01050000244905.A.a.n.a.a ##7	ENSGT00390000005581.a.f	ENSGT00390000001225.t.b ##22	ENSGT00940000156180.e.f ##23	ENSGT00390000015709.c	ENSGT00940000155992.d.a	ENSGT00390000009029.u	ENSGT00940000155238.`b.a	ENSGT00950000183003.a.a.b.c.a.f	ENSGT00970000198397	ENSGT00940000164807.E.a.a.a.b.b	ENSGT00940000157622.a.a.d	ENSGT00940000163186	ENSGT00940000164022.g.a	ENSGT00940000154344.b.h	ENSGT00940000161628	ENSGT00390000002871.c	ENSGT00940000159942.a.c.a.k
Rainbow trout	MODERN SPECIES	28	s100b (ENSOMYG00000043015)	ENSOMYG00000042998	ahr2 (ENSOMYG00000042973)	ahr1b (ENSOMYG00000042466)	ENSOMYG00000042395	mfsd6a (ENSOMYG00000042389)	nab1a (ENSOMYG00000042385)	ENSOMYG00000062063	ENSOMYG00000042380	glsa (ENSOMYG00000037999) ##8	stat1a (ENSOMYG00000035706) ##7	stat1a (ENSOMYG00000034815) ##7	mstn2a (ENSOMYG00000034675)	stat1-2 (ENSOMYG00000029899) ##7	ftcd (ENSOMYG00000028552)	cnot9 (ENSOMYG00000028478) ##22	ENSOMYG00000025557 ##23	slx9 (ENSOMYG00000024848)	ENSOMYG00000059934	ENSOMYG00000024220	cep70 (ENSOMYG00000024063)	ENSOMYG00000024029	ENSOMYG00000053356	ENSOMYG00000062304	ENSOMYG00000021692	cd99 (ENSOMYG00000021243)	gyg2 (ENSOMYG00000021209)	ENSOMYG00000057791	ENSOMYG00000072229	ENSOMYG00000021193	ENSOMYG00000021183
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT00940000160532.h.d.a	ENSGT00950000182977.B.b.b.d	ENSGT00940000160532.h.d.b	ENSGT00530000065251.m.a	ENSGT00940000153773.a.b	ENSGT00940000154486.b.b.b.a.b	ENSGT00940000155311.B	ENSGT00530000063599.B.m.a.a	ENSGT00390000006330.a.a.b.c	ENSGT00940000165672.r	ENSGT00390000010463.a.b.c.a.f ##8	ENSGT01050000244905.A.a.n.b ##7	ENSGT00940000167649.a	ENSGT01050000244905.A.a.n.a.a ##7	ENSGT00390000005581.a.f	ENSGT00390000001225.t.b ##22	ENSGT00940000156180.e.f ##23	ENSGT00390000015709.c	ENSGT00390000013151.a.a.b.d	ENSGT00940000160639.b.a.b.b.b.b.d	ENSGT00940000160639.b.a.b.b.b.b.c	ENSGT00940000166921.a	ENSGT00950000182860.a.b.b.d	ENSGT00950000183208.A.c.b.f	ENSGT00940000157233.d.h	ENSGT00530000064137.a.b.u.b	ENSGT00940000158526.t	ENSGT00390000000220.A.d	ENSGT00390000000220.B.c.b.b	ENSGT00390000015050.`b.a.f	ENSGT00940000157541.f.d.d
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	31	cyyr1 (ENSOTSG00005013667)	ADAMTS1 (ENSOTSG00005013666)	ADAMTS5 (ENSOTSG00005013665)	ENSOTSG00005013664	ENSOTSG00005013141	ENSOTSG00005013138	ENSOTSG00005013136	ENSOTSG00005013135	nab1a (ENSOTSG00005013134)	ENSOTSG00005013133	glsa (ENSOTSG00005007019) ##8	stat1a (ENSOTSG00005006890) ##7	ENSOTSG00005006886	stat1a (ENSOTSG00005006877) ##7	ftcd (ENSOTSG00005006700)	cnot9 (ENSOTSG00005006697) ##22	ENSOTSG00005005687 ##23	slx9 (ENSOTSG00005005680)	ADARB1 (ENSOTSG00005005676)	cep70 (ENSOTSG00005005671)	ENSOTSG00005001554	sowahcb (ENSOTSG00005001539)	ZBED1 (ENSOTSG00005001536)	dhrsx (ENSOTSG00005001533)	cd99 (ENSOTSG00005001523)	gyg2 (ENSOTSG00005001386)	zgc:153142 (ENSOTSG00005001380)	MXRA5 (ENSOTSG00005001377)	ENSOTSG00005001374	pudp (ENSOTSG00005001372)	nlgn4xa (ENSOTSG00005000721)
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005012333	casp2 (ENSOTSG00005012334)	ENSOTSG00005012336	FAM131B (ENSOTSG00005012953)	ENSOTSG00005012954	ENSOTSG00005012956	ENSOTSG00005012957	mfsd6a (ENSOTSG00005012959)	nab1a (ENSOTSG00005012963)	ENSOTSG00005012966	glsa (ENSOTSG00005012993) ##8	stat1a (ENSOTSG00005021981) ##7	ENSOTSG00005022141	stat1a (ENSOTSG00005022152) ##7	ftcd (ENSOTSG00005022537)	cnot9 (ENSOTSG00005022994) ##22	ENSOTSG00005023001 ##23	slx9 (ENSOTSG00005023104)	cep70 (ENSOTSG00005023112)	ENSOTSG00005023141	sowahcb (ENSOTSG00005026699)	dhrsx (ENSOTSG00005026701)	ENSOTSG00005026704	cd99 (ENSOTSG00005026724)	gyg2 (ENSOTSG00005000756)	zgc:153142 (ENSOTSG00005001082)	MXRA5 (ENSOTSG00005001089)	ENSOTSG00005001107	pudp (ENSOTSG00005001145)	nlgn4xa (ENSOTSG00005001184)	ENSOTSG00005002174
Coho salmon	MODERN SPECIES	25	ENSOKIG00005005295	ENSOKIG00005005269	ahr2 (ENSOKIG00005005263)	ENSOKIG00005005251	ENSOKIG00005049356	ahr1b (ENSOKIG00005049321)	ENSOKIG00005049306	mfsd6a (ENSOKIG00005049297)	nab1a (ENSOKIG00005049290)	ENSOKIG00005049282	glsa (ENSOKIG00005048559) ##8	stat1a (ENSOKIG00005048380) ##7	ENSOKIG00005048365	ENSOKIG00005048097 ##7	ftcd (ENSOKIG00005047908)	cnot9 (ENSOKIG00005047863) ##22	ENSOKIG00005047090 ##23	slx9 (ENSOKIG00005047007)	ADARB1 (ENSOKIG00005046750)	cep70 (ENSOKIG00005046714)	ENSOKIG00005046595	sowahcb (ENSOKIG00005046584)	dhrsx (ENSOKIG00005046567)	cd99 (ENSOKIG00005046547)	gyg2 (ENSOKIG00005046538)	zgc:153142 (ENSOKIG00005046528)	MXRA5 (ENSOKIG00005046522)	PRKX (ENSOKIG00005046509)	pudp (ENSOKIG00005046504)	ENSOKIG00005046403	STS (ENSOKIG00005046383)
Huchen	MODERN SPECIES	1732										glsa (ENSHHUG00000041545) ##8	stat1a (ENSHHUG00000041513) ##7	ENSHHUG00000041511	stat1a (ENSHHUG00000040560) ##7	ENSHHUG00000040529	ftcd (ENSHHUG00000040391)	cnot9 (ENSHHUG00000040322) ##22	ENSHHUG00000040159 ##23	slx9 (ENSHHUG00000040143)	ADARB1 (ENSHHUG00000040100)	cep70 (ENSHHUG00000040088)	septin10 (ENSHHUG00000039545)	sowahcb (ENSHHUG00000039534)
Northern pike	MODERN SPECIES	21	ARL4C (ENSELUG00000015699)	sh3bp4a (ENSELUG00000015726)	s100b (ENSELUG00000015744)	ENSELUG00000031760	RHCG (ENSELUG00000015813)	ENSELUG00000015840	ahr2 (ENSELUG00000015884)	ahr1b (ENSELUG00000015980)	ENSELUG00000016012	mfsd6a (ENSELUG00000016114)	nab1a (ENSELUG00000016158)	glsa (ENSELUG00000016228) ##8	mstna (ENSELUG00000016246)	stat1a (ENSELUG00000016334) ##7	ftcd (ENSELUG00000016402)	cnot9 (ENSELUG00000016480) ##22	ENSELUG00000016500 ##23	slx9 (ENSELUG00000016526)	ADARB1 (ENSELUG00000016573)	cep70 (ENSELUG00000016655)	SEPTIN10 (ENSELUG00000016706)	sowahcb (ENSELUG00000016718)	ENSELUG00000016743	ZBED1 (ENSELUG00000016729)	cd99 (ENSELUG00000016776)	gyg2 (ENSELUG00000016821)	zgc:153142 (ENSELUG00000016846)	MXRA5 (ENSELUG00000016927)	PRKX (ENSELUG00000016968)	pudp (ENSELUG00000016995)	nlgn4xa (ENSELUG00000001445)
Otomorpha	ANCESTRAL SPECIES	515														ENSGT00940000167649	ENSGT00390000005581.a	ENSGT00390000001225 #22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029
Otophysi	ANCESTRAL SPECIES	121	ENSGT00950000183114.a.b.b	ENSGT00940000160639.b.b	ENSGT00940000160639.a	ENSGT00390000013151.a.a.a	ENSGT00940000161997.a	ENSGT00940000160532.g	ENSGT00940000154486.b.a.a.b.e.a.b	ENSGT00940000154486.b.b.b	ENSGT00940000155311.B	ENSGT00530000063599.B.g	ENSGT00390000006330.a.a.b	ENSGT00390000010463.a.b.c.a ##8	ENSGT01050000244905.A.a ##7	ENSGT00940000167649	ENSGT00390000005581.a	ENSGT00390000001225 #22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00390000015050.`b.b	ENSGT00940000157541.e	ENSGT01100000263596	ENSGT00940000156095.m.a	ENSGT00940000158559	ENSGT00940000155759.e.b	ENSGT00390000001170.a.b	ENSGT00940000153470.a.a.a.a	ENSGT00940000159094.e	ENSGT00940000156353.u.b	ENSGT00940000157211.k
Characiphysae	ANCESTRAL SPECIES	170	ENSGT00940000160639.b.b	ENSGT00940000160639.a	ENSGT00390000013151.a.a.a	ENSGT00940000161997.a	ENSGT00940000160532.g.c	ENSGT00940000160532.g.d	ENSGT00940000154486.b.a.a.b.e.a.b	ENSGT00940000154486.b.b.b	ENSGT00940000155311.B	ENSGT00530000063599.B.g	ENSGT00390000006330.a.a.b	ENSGT00390000010463.a.b.c.a ##8	ENSGT01050000244905.A.a ##7	ENSGT00940000167649	ENSGT00390000005581.a	ENSGT00390000001225 #22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00390000015050.`b.b
Channel catfish	MODERN SPECIES	19	bzw1a (ENSIPUG00000003696)	ENSIPUG00000003855	he1.2 (ENSIPUG00000005527)	ENSIPUG00000005763	ENSIPUG00000006298	sh3bp4a (ENSIPUG00000006332)	S100B (ENSIPUG00000006356)	ENSIPUG00000006377	ahr2 (ENSIPUG00000006401)	ahr1b (ENSIPUG00000006436)	ENSIPUG00000006485	mfsd6a (ENSIPUG00000006492)	stat1a (ENSIPUG00000006568) ##7	mstna (ENSIPUG00000008665)	FTCD (ENSIPUG00000008676)	cnot9 (ENSIPUG00000008737) #22	ENSIPUG00000008758 ##23	fam207a (ENSIPUG00000008788)	adarb1 (ENSIPUG00000008816)	mmadhca (ENSIPUG00000008913)	cep70 (ENSIPUG00000008869)	krt96 (ENSIPUG00000008945)	krt222 (ENSIPUG00000008981)	mettl21a (ENSIPUG00000009009)	dpp4 (ENSIPUG00000009029)	gcga (ENSIPUG00000009050)	PCYT2 (ENSIPUG00000009148)	GNAO (ENSIPUG00000009256)	npb (ENSIPUG00000009301)	sgsh (ENSIPUG00000009330)	slc26a11 (ENSIPUG00000009399)
Characiphysae_b	ANCESTRAL SPECIES	87						ENSGT00940000160532.g.d	ENSGT00940000154486.b.a.a.b.e.a.b.a	ENSGT00940000154486.b.b.b	ENSGT00940000155311.B	ENSGT00530000063599.B.g	ENSGT00390000006330.a.a.b	ENSGT00390000010463.a.b.c.a ##8	ENSGT01050000244905.A.a ##7	ENSGT00940000167649	ENSGT00390000005581.a	ENSGT00390000001225 #22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00390000015050.`b.b	ENSGT00950000182969.B.c.a.b	ENSGT00940000159655	ENSGT00940000157249	ENSGT00940000163944	ENSGT00390000005372.f	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b
Characoidei	ANCESTRAL SPECIES	84						ENSGT00940000160532.g.d	ENSGT00940000154486.b.a.a.b.e.a.b.a	ENSGT00940000154486.b.b.b	ENSGT00940000155311.B	ENSGT00530000063599.B.g	ENSGT00390000006330.a.a.b	ENSGT00390000010463.a.b.c.a ##8	ENSGT01050000244905.A.a ##7	ENSGT00940000167649	ENSGT00390000005581.a	ENSGT00390000001225 #22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00390000015050.`b.b	ENSGT00950000182969.B.c.a.b	ENSGT00940000159655	ENSGT00940000157249	ENSGT00940000163944	ENSGT00390000005372.f	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b
Red-bellied piranha	MODERN SPECIES	802																cnot9 (ENSPNAG00000022564) #22	ENSPNAG00000022645 ##23	slx9 (ENSPNAG00000022664)	adarb1a (ENSPNAG00000022697)	cep70 (ENSPNAG00000022802)	mmadhca (ENSPNAG00000022832)	krt96 (ENSPNAG00000003740)	KRT222 (ENSPNAG00000006816)	ENSPNAG00000022855
Mexicana tetra	MODERN SPECIES	50			ENSAMXG00000013974	ENSAMXG00000043102	ahr2 (ENSAMXG00000013928)	ahr1b (ENSAMXG00000013907)	ENSAMXG00000026310	mfsd6a (ENSAMXG00000013890)	nab1a (ENSAMXG00000013878)	dnaaf1 (ENSAMXG00000037795)	glsa (ENSAMXG00000013859) ##8	pipox (ENSAMXG00000037120)	stat1a (ENSAMXG00000013830) ##7	mstna (ENSAMXG00000029840)	ftcd (ENSAMXG00000013790)	cnot9 (ENSAMXG00000013778) #22	ENSAMXG00000032795 ##23	slx9 (ENSAMXG00000030110)	adarb1a (ENSAMXG00000013675)	cep70 (ENSAMXG00000013654)	mmadhca (ENSAMXG00000034884)	krt96 (ENSAMXG00000041340)	ENSAMXG00000032855	mettl21a (ENSAMXG00000037058)	dpp4 (ENSAMXG00000013549)	gcga (ENSAMXG00000039471)	pcyt2 (ENSAMXG00000035632)	ENSAMXG00000031693	nptxrb (ENSAMXG00000029357)	ENSAMXG00000013873	ENSAMXG00000029688
Electric eel	MODERN SPECIES	527					KCNB2 (ENSEEEG00000012601)	trpa1b (ENSEEEG00000012604)	MSC (ENSEEEG00000012607)	wdr83os (ENSEEEG00000012608)	ENSEEEG00000012610	mfsd6a (ENSEEEG00000012612)	nab1a (ENSEEEG00000012641)	glsa (ENSEEEG00000012646) ##8	stat1a (ENSEEEG00000012649) ##7	mstna (ENSEEEG00000012655)	ftcd (ENSEEEG00000012824)	cnot9 (ENSEEEG00000012825) #22	ENSEEEG00000012842 ##23	slx9 (ENSEEEG00000013296)
Cyprinoidei	ANCESTRAL SPECIES	39	ENSGT00950000183114.a.b.b.gb.a	ENSGT00950000183114.a.b.b.hb	ENSGT00940000160639.b.a.a	ENSGT00390000013151.a.a.a	ENSGT00940000161997.a	ENSGT00940000160532.g	ENSGT00940000154486.b.a.a.b.e.a.b	ENSGT00940000154486.b.b.b	ENSGT00940000155311.B	ENSGT00530000063599.B.g	ENSGT00390000006330.a.a.b	ENSGT00390000010463.a.b.c.a ##8	ENSGT01050000244905.A.a ##7	ENSGT00940000167649	ENSGT00390000005581.a	ENSGT00390000001225 #22	ENSGT00940000156180.e ##23	ENSGT00390000015709	ENSGT00940000155992.c.b	ENSGT00390000009029	ENSGT00390000015050.`b.b	ENSGT00940000157541.e	ENSGT00940000156095.m.a	ENSGT00940000158559	ENSGT00940000155759.e.b	ENSGT00390000001170.a.b	ENSGT00940000153470.a.a.a.a	ENSGT00940000159094.e	ENSGT00940000156353.u.b	ENSGT00940000157211.k	ENSGT00950000182969.B.c.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	11	ENSGT00940000154486.b.a.a.b.e.a.b.c	ENSGT00940000154486.b.b.b.f	ENSGT00940000155311.B	ENSGT00530000063599.B.g.d	ENSGT00390000006330.a.a.b.a	ENSGT00390000010463.a.b.c.a.a ##8	ENSGT01050000244905.A.a.b ##7	ENSGT00940000167649.f.a	ENSGT00530000063599.B.g.c	ENSGT00390000006330.a.a.b.b	ENSGT00390000010463.a.b.c.a.b ##8	ENSGT01050000244905.A.a.a ##7	ENSGT00940000167649.f.b	ENSGT00940000167649.e	ENSGT00390000005581.a	ENSGT00390000001225.q #22	ENSGT00940000156180.e.a ##23	ENSGT00390000015709.b	ENSGT00940000155992.c.b.g	ENSGT00390000015050.`b.b.b	ENSGT00940000157541.e.w	ENSGT00940000156095.m.a.b	ENSGT00940000158559.d	ENSGT00940000155759.e.b.a	ENSGT00390000001170.a.b.d	ENSGT00940000153470.a.a.a.a.e	ENSGT00940000159094.e.a	ENSGT00940000156353.u.b.f	ENSGT00940000157211.k.b	ENSGT00950000182969.B.c.a.b.f	ENSGT00940000159655.e
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	14	ENSCARG00000021065	ENSCARG00000021055	ENSCARG00000021049	ENSCARG00000021012	ENSCARG00000021004	ENSCARG00000020999	AhR2 (ENSCARG00000020982)	ahr1b (ENSCARG00000020953)	ENSCARG00000020943	mfsd6a (ENSCARG00000020932)	nab1a (ENSCARG00000020926)	glsa (ENSCARG00000019265) ##8	stat1a (ENSCARG00000019108) ##7	mstna (ENSCARG00000019065)	ftcd (ENSCARG00000018797)	cnot9 (ENSCARG00000018761) #22	ENSCARG00000018757	ENSCARG00000018748	ENSCARG00000018741	ENSCARG00000018738	ENSCARG00000018736	ENSCARG00000018733	ENSCARG00000018731	ENSCARG00000018723	ENSCARG00000018717	ENSCARG00000018714	ENSCARG00000018704	ENSCARG00000018686	ENSCARG00000018697	ENSCARG00000018675	ENSCARG00000018672
Goldfish	MODERN SPECIES	14	ENSCARG00000042799	ENSCARG00000042744	cela1.6 (ENSCARG00000042709)	ENSCARG00000040720	ENSCARG00000040642	ahr2 (ENSCARG00000040299)	ENSCARG00000040267	ahr1b (ENSCARG00000040185)	ENSCARG00000040156	mfsd6a (ENSCARG00000040144)	nab1a (ENSCARG00000040133)	glsa (ENSCARG00000036617) ##8	stat1a (ENSCARG00000035963) ##7	mstna (ENSCARG00000035931)	ftcd (ENSCARG00000034487)	cnot9 (ENSCARG00000034144) #22	ENSCARG00000030708 ##23	slx9 (ENSCARG00000030582)	adarb1a (ENSCARG00000030514)	mmadhca (ENSCARG00000030491)	rnd3a (ENSCARG00000030471)	R3HDM1 (ENSCARG00000028063)	ccnt2b (ENSCARG00000027929)	TMEM163 (ENSCARG00000027906)	ENSCARG00000027898	ENSCARG00000027890	ENSCARG00000027881	ENSCARG00000009640	ENSCARG00000009620	ENSCARG00000009613	ENSCARG00000009606
Cyprininae_a	ANCESTRAL SPECIES	372																ENSGT00390000001225.q #22	ENSGT00940000156180.e.a ##23	ENSGT00390000015709.b	ENSGT00940000155992.c.b.g	ENSGT00390000015050.`b.b.b	ENSGT00940000157541.e.w	ENSGT00940000156095.m.a.b	ENSGT00940000158559.d	ENSGT00940000155759.e.b.a	ENSGT00390000001170.a.b.d	ENSGT00940000153470.a.a.a.a.e	ENSGT00940000159094.e.a	ENSGT00940000156353.u.b.f	ENSGT00940000157211.k.b	ENSGT00950000182969.B.c.a.b.f	ENSGT00940000159655.e
Common carp reference	MODERN SPECIES	5	ENSCCRG00000014242	ENSCCRG00000079814	sh3bp4a (ENSCCRG00000012425)	s100b (ENSCCRG00000070941)	ENSCCRG00000072550	ENSCCRG00000067507	ahr2 (ENSCCRG00000015382)	ahr1b (ENSCCRG00000060117)	ENSCCRG00000028849	mfsd6a (ENSCCRG00000031910)	nab1a (ENSCCRG00000031919)	glsa (ENSCCRG00000062028) ##8	stat1a (ENSCCRG00000026976) ##7	mstna (ENSCCRG00000027350)	ftcd (ENSCCRG00000027372)	cnot9 (ENSCCRG00000027911) #22	ENSCCRG00000041263 ##23	slx9 (ENSCCRG00000038404)	adarb1a (ENSCCRG00000035133)	mmadhca (ENSCCRG00000035622)	rnd3a (ENSCCRG00000007684)	ENSCCRG00000066299	ENSCCRG00000005743	ENSCCRG00000045345	ENSCCRG00000080602	mgat5 (ENSCCRG00000067276)	ENSCCRG00000071402	ENSCCRG00000058051	ptpn4b (ENSCCRG00000046118)	ENSCCRG00000058389	ENSCCRG00000072057
Golden-line barbel	MODERN SPECIES	86						ENSSGRG00000031729	ahr2 (ENSSGRG00000031728)	ahr1b (ENSSGRG00000031467)	ENSSGRG00000031462	mfsd6a (ENSSGRG00000031461)	ENSSGRG00000031460	glsa (ENSSGRG00000030052) ##8	stat1a (ENSSGRG00000030033) ##7	mstna (ENSSGRG00000030028)	ftcd (ENSSGRG00000029876)	cnot9 (ENSSGRG00000029839) #22	ENSSGRG00000029526 ##23	slx9 (ENSSGRG00000029519)	adarb1a (ENSSGRG00000029407)	ENSSGRG00000029404	mmadhca (ENSSGRG00000029400)	rnd3a (ENSSGRG00000029394)	R3HDM1 (ENSSGRG00000029392)	ENSSGRG00000029353	ccnt2b (ENSSGRG00000029292)	TMEM163 (ENSSGRG00000029291)	mgat5 (ENSSGRG00000029070)	PTH2R (ENSSGRG00000029056)	MRAS (ENSSGRG00000029052)	ptpn4b (ENSSGRG00000028262)	ENSSGRG00000028260
Cyprininae	ANCESTRAL SPECIES	11	ENSGT00390000015709.b	ENSGT00940000155992.c.b.g	ENSGT00390000015050.`b.b.b	ENSGT00940000157541.e.w	ENSGT00940000156095.m.a.b	ENSGT00940000158559.d	ENSGT00940000155759.e.b.a	ENSGT00390000001170.a.b.d	ENSGT00940000153470.a.a.a.a.e	ENSGT00940000159094.e.a	ENSGT00940000156353.u.b.f	ENSGT00940000157211.k.b	ENSGT00950000182969.B.c.a.b.f	ENSGT00940000159655.e	ENSGT00940000160342.f.a	ENSGT00390000001225.r #22	ENSGT00940000156180.e.b ##23	ENSGT00390000015709.a	ENSGT00940000155992.c.b.h	ENSGT00390000009029	ENSGT00390000015050.`b.b.a	ENSGT00940000157541.e.x	ENSGT00940000156095.m.a.a	ENSGT00940000158559.c	ENSGT00940000155759.e.b.b	ENSGT00390000001170.a.b.c	ENSGT00940000153470.a.a.a.a.f	ENSGT00940000159094.e.b	ENSGT00940000156353.u.b.e	ENSGT00940000157211.k.a	ENSGT00950000182969.B.c.a.b.e
Cyprininae_a	ANCESTRAL SPECIES	144						ENSGT00990000210218	ENSGT00940000154486.b.a.a.b.e.a.b.c	ENSGT00940000154486.b.b.b.f	ENSGT00940000155311.B.k	ENSGT00530000063599.B.g.d	ENSGT00390000006330.a.a.b.a	ENSGT00390000010463.a.b.c.a.a ##8	ENSGT01050000244905.A.a.b ##7	ENSGT00940000167649.f.a	ENSGT00390000005581.a	ENSGT00390000001225.r #22	ENSGT00940000156180.e.b ##23	ENSGT00390000015709.a	ENSGT00940000155992.c.b.h	ENSGT00390000009029	ENSGT00390000015050.`b.b.a	ENSGT00940000157541.e.x	ENSGT00940000156095.m.a.a	ENSGT00940000158559.c	ENSGT00940000155759.e.b.b	ENSGT00390000001170.a.b.c	ENSGT00940000153470.a.a.a.a.f	ENSGT00940000159094.e.b	ENSGT00940000156353.u.b.e	ENSGT00940000157211.k.a	ENSGT00950000182969.B.c.a.b.e
Common carp reference	MODERN SPECIES	43	ENSCCRG00000066892	ENSCCRG00000029718	arl4ca (ENSCCRG00000068203)	sh3bp4a (ENSCCRG00000081633)	ENSCCRG00000076782	s100b (ENSCCRG00000069359)	ENSCCRG00000003704	ahr2 (ENSCCRG00000031831)	ahr1b (ENSCCRG00000005944)	ENSCCRG00000073877	mfsd6a (ENSCCRG00000039447)	nab1a (ENSCCRG00000054360)	glsa (ENSCCRG00000032031) ##8	stat1a (ENSCCRG00000035713) ##7	mstna (ENSCCRG00000035818)	cnot9 (ENSCCRG00000041798) #22	ENSCCRG00000028054 ##23	slx9 (ENSCCRG00000052631)	adarb1a (ENSCCRG00000020488)	cep70 (ENSCCRG00000008917)	mmadhca (ENSCCRG00000057539)	rnd3a (ENSCCRG00000043088)	ENSCCRG00000008994	ENSCCRG00000000761	ccnt2b (ENSCCRG00000066766)	ENSCCRG00000000810	mgat5 (ENSCCRG00000077969)	ENSCCRG00000020887	ENSCCRG00000022437	ENSCCRG00000038513	ptpn4b (ENSCCRG00000038493)
Golden-line barbel	MODERN SPECIES	294	aox5 (ENSSGRG00000023726)	AOX1 (ENSSGRG00000023054)	arl4ca (ENSSGRG00000023030)	sh3bp4a (ENSSGRG00000023017)	s100b (ENSSGRG00000023015)	CNTNAP5 (ENSSGRG00000023011)	ahr2 (ENSSGRG00000023001)	ahr1b (ENSSGRG00000022942)	ENSSGRG00000022941	mfsd6a (ENSSGRG00000022940)	nab1a (ENSSGRG00000022939)	glsa (ENSSGRG00000022467) ##8	stat1a (ENSSGRG00000021736) ##7	ENSSGRG00000021728	ftcd (ENSSGRG00000021699)	cnot9 (ENSSGRG00000021698) #22	PLCD4 (ENSSGRG00000021487) ##23	slx9 (ENSSGRG00000021481)	adarb1a (ENSSGRG00000021475)	mmadhca (ENSSGRG00000021472)	rnd3a (ENSSGRG00000021462)
Goldfish	MODERN SPECIES	41	ENSCARG00000047934	AOX1 (ENSCARG00000047824)	arl4ca (ENSCARG00000047805)	ENSCARG00000047783	sh3bp4a (ENSCARG00000047723)	s100b (ENSCARG00000047694)	ENSCARG00000040693	ahr2 (ENSCARG00000040345)	ENSCARG00000040333	ahr1b (ENSCARG00000040222)	mfsd6a (ENSCARG00000040194)	glsa (ENSCARG00000039255) ##8	stat1a (ENSCARG00000034836) ##7	mstna (ENSCARG00000034715)	ENSCARG00000034701	cnot9 (ENSCARG00000034596) #22	ENSCARG00000032255 ##23	adarb1a (ENSCARG00000031891)	cep70 (ENSCARG00000031810)	mmadhca (ENSCARG00000031782)	rnd3a (ENSCARG00000031747)	R3HDM1 (ENSCARG00000031421)	ZRANB3 (ENSCARG00000030341)	ccnt2b (ENSCARG00000030214)	TMEM163 (ENSCARG00000030198)	mgat5 (ENSCARG00000030031)	ENSCARG00000029970	PTH2R (ENSCARG00000029891)	MRAS (ENSCARG00000029875)	ptpn4b (ENSCARG00000029749)	ENSCARG00000029718
Zebrafish	MODERN SPECIES	14	ENSDARG00000020054	arl4ca (ENSDARG00000057606)	sh3bp4a (ENSDARG00000020000)	s100b (ENSDARG00000057598)	ENSDARG00000093992	CNTNAP5 (ENSDARG00000075189)	ENSDARG00000096917	ahr2 (ENSDARG00000021833)	ahr1b (ENSDARG00000023537)	mfsd6a (ENSDARG00000032318)	nab1a (ENSDARG00000042940)	glsa (ENSDARG00000062812) ##8	stat1a (ENSDARG00000006266) ##7	mstna (ENSDARG00000042947)	ftcd (ENSDARG00000007421)	cnot9 (ENSDARG00000033855) #22	ENSDARG00000057975 ##23	slx9 (ENSDARG00000071500)	adarb1a (ENSDARG00000041609)	cep70 (ENSDARG00000076965)	mmadhca (ENSDARG00000041602)	ENSDARG00000105974	rnd3a (ENSDARG00000076799)	ENSDARG00000101458	ZRANB3 (ENSDARG00000091538)	ccnt2b (ENSDARG00000036510)	TMEM163 (ENSDARG00000088227)	mgat5 (ENSDARG00000071506)	PTH2R (ENSDARG00000021186)	MRAS (ENSDARG00000062865)	ptpn4b (ENSDARG00000000183)
Clupeiformes	ANCESTRAL SPECIES	46	ENSGT00390000013151.a.a.a	ENSGT00940000160639.b.a.b.b.a	ENSGT00950000183114.a.b.b	ENSGT00390000012561.b.pb.b	ENSGT00940000166136	ENSGT00940000167103	ENSGT00940000157521.a.b	ENSGT00390000008033	ENSGT00950000183208.A.c.a	ENSGT00940000157233.c	ENSGT00390000016542	ENSGT00530000064137.a.b	ENSGT00940000158526	ENSGT00940000167649	ENSGT00390000005581.a	ENSGT00390000001225 #22	ENSGT00940000156180.e ##23	ENSGT00500000044939	ENSGT00940000163253.b.c.a.e	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000159606	ENSGT00940000158239.a.a.d	ENSGT00940000158239.a.b	ENSGT00860000133854	ENSGT00940000154319	ENSGT00940000153534.A	ENSGT00940000155099.k.b	ENSGT00940000154076.B.b	ENSGT00940000155518.n
Denticle herring	MODERN SPECIES	15	sh3bp4a (ENSDCDG00000026424)	ENSDCDG00000026431	AOX1 (ENSDCDG00000026445)	bzw1a (ENSDCDG00000026614)	ENSDCDG00000026619	ENSDCDG00000026623	LRP1B (ENSDCDG00000026680)	KYNU (ENSDCDG00000026942)	ENSDCDG00000000205	zeb2b (ENSDCDG00000000270)	ACVR2A (ENSDCDG00000000525)	orc4 (ENSDCDG00000001038)	MBD5 (ENSDCDG00000001067)	mstna (ENSDCDG00000001073)	ftcd (ENSDCDG00000001081)	cnot9 (ENSDCDG00000001090) #22	ENSDCDG00000001319 ##23	cyp20a1 (ENSDCDG00000002398)	tmem237b (ENSDCDG00000002406)	zp2l2 (ENSDCDG00000002409)	MPP4 (ENSDCDG00000002418)	ALS2 (ENSDCDG00000002468)	cdk15 (ENSDCDG00000002501)	fzd7b (ENSDCDG00000002516)	sumo1 (ENSDCDG00000002518)	ENSDCDG00000002523	nop58 (ENSDCDG00000002539)	ENSDCDG00000002554	ENSDCDG00000002765	KCNH7 (ENSDCDG00000009421)	ENSDCDG00000009470
Atlantic herring	MODERN SPECIES	13	ENSCHAG00000015535	ENSCHAG00000015514	ENSCHAG00000013112	ENSCHAG00000013076	ENSCHAG00000012946	KYNU (ENSCHAG00000012715)	zeb2b (ENSCHAG00000012603)	ACVR2A (ENSCHAG00000012241)	orc4 (ENSCHAG00000011816)	ENSCHAG00000011781	ENSCHAG00000011763	ENSCHAG00000011749	mstna (ENSCHAG00000011741)	ENSCHAG00000011727	ftcd (ENSCHAG00000011671)	cnot9 (ENSCHAG00000011642) #22	ENSCHAG00000009301 ##23	cyp20a1 (ENSCHAG00000009217)	zp2l2 (ENSCHAG00000009198)	tmem237b (ENSCHAG00000009153)	MPP4 (ENSCHAG00000008043)	ALS2 (ENSCHAG00000007884)	cdk15 (ENSCHAG00000007829)	fzd7b (ENSCHAG00000007812)	sumo1 (ENSCHAG00000007753)	nop58 (ENSCHAG00000007579)	SP3 (ENSCHAG00000007545)	ENSCHAG00000006018	ENSCHAG00000005919	ENSCHAG00000005850	ENSCHAG00000005781
Osteoglossiformes	ANCESTRAL SPECIES	92	ENSGT01050000244905.F.a ##7	ENSGT01050000244905.D.b #7	ENSGT00390000006303	ENSGT00390000015143.m	ENSGT01040000240966	ENSGT00390000012446	ENSGT00390000007295	ENSGT00950000183178.b.a.b #13	ENSGT00390000010706 #12	ENSGT00940000165813.b #15	ENSGT00940000167830 #16	ENSGT00890000139491 #17	ENSGT00390000005581.a	ENSGT00390000011570 #18	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000163074 #24	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000156180.e ##23	ENSGT00390000005415 #25	ENSGT01090000259987.a.a.a.k	ENSGT00940000155992.c.a	ENSGT00530000063273.b.a.a.i	ENSGT00940000178952
P. kingsleyae	MODERN SPECIES	143	ENSPKIG00000009081 ##7	STAT4 (ENSPKIG00000009159) #7	wdr75 (ENSPKIG00000009219)	slc40a1 (ENSPKIG00000009315)	ENSPKIG00000009346	asnsd1 (ENSPKIG00000009369)	zgc:136439 (ENSPKIG00000009390)	ormdl1 (ENSPKIG00000009421) #13	adat3 (ENSPKIG00000009430) #12	mstnb (ENSPKIG00000009447) #15	ENSPKIG00000009458 #16	hibch (ENSPKIG00000009544) #17	ftcd (ENSPKIG00000009608)	lss (ENSPKIG00000009662) #18	usp37 (ENSPKIG00000009730) #21	cnot9 (ENSPKIG00000009784) #22	PLCD4 (ENSPKIG00000009836) ##23	bcs1l (ENSPKIG00000009893) #25	ITGB2 (ENSPKIG00000009931)	ADARB1 (ENSPKIG00000010029)	agr1 (ENSPKIG00000010124)	ENSPKIG00000010143	ENSPKIG00000010150	twist2 (ENSPKIG00000010163)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	3	ENSSFOG00015017498	INPP1 (ENSSFOG00015026325)	MFSD6 (ENSSFOG00015025453)	nab1a (ENSSFOG00015028607)	GLS (ENSSFOG00015017398) #8	ENSSFOG00015017332 ##7	STAT4 (ENSSFOG00015017295) #7	slc40a1 (ENSSFOG00015017048)	ankar (ENSSFOG00015017103)	osgepl1 (ENSSFOG00015032790) #10	ormdl1 (ENSSFOG00015017000) #13	pms1 (ENSSFOG00015016975) #14	mstnb (ENSSFOG00015007755) ##15	ENSSFOG00015016895 #19	ybey (ENSSFOG00015016861) #20	cnot9 (ENSSFOG00015016841) #22	ZNF142 (ENSSFOG00015016826) #24	zgc:136333 (ENSSFOG00015016809) #26	zgc:66484 (ENSSFOG00015016800)	vil1 (ENSSFOG00015016742)	ITGB2 (ENSSFOG00015016688)	ENSSFOG00015025596	adarb1a (ENSSFOG00015026681)	agr1 (ENSSFOG00015016605)	traf3ip1 (ENSSFOG00015016550)	asb1 (ENSSFOG00015016536)	twist2 (ENSSFOG00015016493)	hdac4 (ENSSFOG00015016138)	ENSSFOG00015028409	LCT (ENSSFOG00015015738)	ENSSFOG00015030348
Asian bonytongue	MODERN SPECIES	13	GLS (ENSSFOG00015007335) #8	ENSSFOG00015007466 ##7	wdr75 (ENSSFOG00015007594)	slc40a1 (ENSSFOG00015007627)	asnsd1 (ENSSFOG00015007722)	ENSSFOG00015031386	zgc:136439 (ENSSFOG00015007671)	adat3 (ENSSFOG00015007730) #12	ormdl1 (ENSSFOG00015007742) #13	mstnb (ENSSFOG00015032994) ##15	ENSSFOG00015007772 #16	hibch (ENSSFOG00015007778) #17	ftcd (ENSSFOG00015007819)	lss (ENSSFOG00015008011) #18	usp37 (ENSSFOG00015008144) #21	CNOT9 (ENSSFOG00015008212) #22	PLCD4 (ENSSFOG00015008280) ##23	bcs1l (ENSSFOG00015008461) #25	ENSSFOG00015008495	ADARB1 (ENSSFOG00015008633)	agr1 (ENSSFOG00015008865)	traf3ip1 (ENSSFOG00015008906)	ENSSFOG00015032019	ENSSFOG00015032989	hdac4 (ENSSFOG00015009015)	ENSSFOG00015009121	aamp (ENSSFOG00015009135)	ENSSFOG00015009167	ENSSFOG00015009184	zgc:92380 (ENSSFOG00015009201)	arpc2 (ENSSFOG00015009215)
Spotted gar	MODERN SPECIES	650	ankar (ENSLOCG00000008769)	osgepl1 (ENSLOCG00000008781) #10	adat3 (ENSLOCG00000017833) #12	ormdl1 (ENSLOCG00000008794) #13	pms1 (ENSLOCG00000008805) #14	mstnb (ENSLOCG00000008826) #15	ENSLOCG00000017834 #16	hibch (ENSLOCG00000008833) #17	ENSLOCG00000008844	ftcd (ENSLOCG00000008855)	SPATC1L (ENSLOCG00000008870)	lss (ENSLOCG00000008883) #18	MCM3AP (ENSLOCG00000008893) #19	ybey (ENSLOCG00000008907) #20	usp37 (ENSLOCG00000008918) #21	cnot9 (ENSLOCG00000008931) #22	PLCD4 (ENSLOCG00000008939) ##23	ZNF142 (ENSLOCG00000008959) #24	bcs1l (ENSLOCG00000008964) #25	zgc:136333 (ENSLOCG00000008975) #26	zgc:66484 (ENSLOCG00000008985)	vil1 (ENSLOCG00000008995)	ITGB2 (ENSLOCG00000009021)	slx9 (ENSLOCG00000009039)	adarb1a (ENSLOCG00000009051)	ENSLOCG00000009064	traf3ip1 (ENSLOCG00000009074)	asb1 (ENSLOCG00000009088)	ENSLOCG00000009094	TWIST2 (ENSLOCG00000017835)	hdac4 (ENSLOCG00000009104)
Reedfish	MODERN SPECIES	16	ENSECRG00000020050	abcb6a (ENSECRG00000020018)	cnppd1 (ENSECRG00000020000)	ENSECRG00000019974	prkag3b (ENSECRG00000019925)	ENSECRG00000019900	COL6A2 (ENSECRG00000019859)	ENSECRG00000019835	ENSECRG00000019795	COL6A1 (ENSECRG00000019734)	ftcd (ENSECRG00000019704)	lss (ENSECRG00000019653) #18	MCM3AP (ENSECRG00000019587) #19	ybey (ENSECRG00000019552) #20	ENSECRG00000019528 #21	cnot9 (ENSECRG00000019449) #22	PLCD4 (ENSECRG00000019362) ##23	ZNF142 (ENSECRG00000019317) #24	bcs1l (ENSECRG00000019288) #25	sh3bp4 (ENSECRG00000019270)	gypc (ENSECRG00000019252)	ENSECRG00000018784	ENSECRG00000018649	ENSECRG00000018623	ENSECRG00000018595	ENSECRG00000018042	ENSECRG00000017957	ENSECRG00000017950	ENSECRG00000016844	mnx2b (ENSECRG00000016674)	ENSECRG00000016361
Sarcopterygii	ANCESTRAL SPECIES	469															ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281
Coelacanth	MODERN SPECIES	328													ENSLACG00000017893	ABCB6 (ENSLACG00000017775)	USP37 (ENSLACG00000017668) #21	CNOT9 (ENSLACG00000017626) #22	PLCD4 (ENSLACG00000017515) #23	ZNF142 (ENSLACG00000017476) #24	BCS1L (ENSLACG00000017429) #25	CYP27A1 (ENSLACG00000017374) #26	ENSLACG00000017328 ##26	WNT6 (ENSLACG00000017115)	wnt10a (ENSLACG00000016858)	CDK5R2 (ENSLACG00000016481)	TMEM198 (ENSLACG00000015764)	OBSL1 (ENSLACG00000015484)	INHA (ENSLACG00000015333)	gjc4b (ENSLACG00000015229)	stk11ip (ENSLACG00000014729)	SLC4A3 (ENSLACG00000014086) #31	ENSLACG00000010871
Tetrapoda	ANCESTRAL SPECIES	32	ENSGT00940000155400.B #27	ENSGT01050000244848.A.a	ENSGT00390000016794	ENSGT00940000153309	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b	ENSGT00940000164719	ENSGT00940000159207	ENSGT00390000009940	ENSGT00950000182953.A
Anura	ANCESTRAL SPECIES	41	ENSGT01050000244848.A.a	ENSGT00390000016794	ENSGT00940000153336	ENSGT00940000153309	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00950000182905.a.a.a.a.b.b #26	ENSGT00950000182905.a.a.a.a.b.a.a #26	ENSGT00950000182905.a.a.a.a.b.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a.c	ENSGT00940000161562	ENSGT00430000031142	ENSGT00940000164719	ENSGT00940000159207	ENSGT00390000009940	ENSGT00950000182953.A
Frog	MODERN SPECIES	9	hnmt (ENSXETG00000014875)	thsd7b (ENSXETG00000014878)	cxcr4 (ENSXETG00000041940)	dars1 (ENSXETG00000025033)	mcm6 (ENSXETG00000014891)	ENSXETG00000034493	ENSXETG00000025031	tmbim1 (ENSXETG00000014916)	pnkd (ENSXETG00000014931)	catip (ENSXETG00000014934)	XB5731801 [provisional] (ENSXETG00000025029)	slc11a1 (ENSXETG00000014937)	ctdsp1 (ENSXETG00000041437)	vil1 (ENSXETG00000014965)	usp37 (ENSXETG00000014977) #21	cnot9 (ENSXETG00000014984) #22	plcd4 (ENSXETG00000013830) #23	znf142 (ENSXETG00000035207) #24	bcs1l (ENSXETG00000013844) #25	cyp27a1.3 (ENSXETG00000039601) #26	grsf1 (ENSXETG00000013850)	XB1001094 [provisional:cyp27a1] (ENSXETG00000038396) #26	XB984297 [provisional:cyp27a1] (ENSXETG00000013846) #26	wnt6 (ENSXETG00000045993)	wnt10a (ENSXETG00000048038)	cdk5r2 (ENSXETG00000039048)	fev (ENSXETG00000033826)	cryba2 (ENSXETG00000013865)	cfap65 (ENSXETG00000013869)	ENSXETG00000040115	ihh (ENSXETG00000038561)
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000017900	FEV (ENSLLEG00000017799)	CRYBA2 (ENSLLEG00000017668)	ENSLLEG00000017645	CDK5R2 (ENSLLEG00000017606)	ENSLLEG00000017586	WNT10A (ENSLLEG00000017506)	ENSLLEG00000017474	WNT6 (ENSLLEG00000017419)	ENSLLEG00000017385	ENSLLEG00000017283 #26	ENSLLEG00000017199 #26	ENSLLEG00000017106 #26	ENSLLEG00000016985 #26	USP37 (ENSLLEG00000016557) #21	CNOT9 (ENSLLEG00000016152) #22	ENSLLEG00000016121	PLCD4 (ENSLLEG00000015894) #23	ZNF142 (ENSLLEG00000015806) #24	BCS1L (ENSLLEG00000015574) #25	ENSLLEG00000015490 #26	ENSLLEG00000015413 #26	VIL1 (ENSLLEG00000014708)	ENSLLEG00000014618	SLC11A1 (ENSLLEG00000014359)	ENSLLEG00000014299	CATIP (ENSLLEG00000013511)	TMBIM1 (ENSLLEG00000027713)	ENSLLEG00000027687	ENSLLEG00000027664	AAMP (ENSLLEG00000027578)
Amniota	ANCESTRAL SPECIES	6	ENSGT00940000153309	ENSGT00940000153339	ENSGT00940000155862.a.a.a.a.a	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00950000185166	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
Mammalia	ANCESTRAL SPECIES	59	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00950000185166	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Platypus	MODERN SPECIES		IGFBP5 (ENSOANG00000045048) #28	ENSOANG00000038564 #27	ENSOANG00000041597 #27	ENSOANG00000014535	ENSOANG00000014465	ARPC2 (ENSOANG00000044586)	AAMP (ENSOANG00000036228)	ENSOANG00000002705	TMBIM1 (ENSOANG00000038099)	PNKD (ENSOANG00000048930)	ENSOANG00000041238	SLC11A1 (ENSOANG00000007050)	CTDSP1 (ENSOANG00000038979)	VIL1 (ENSOANG00000043969)	USP37 (ENSOANG00000040621) #21	CNOT9 (ENSOANG00000042732) #22	PLCD4 (ENSOANG00000039189) #23	ZNF142 (ENSOANG00000040583) #24	BCS1L (ENSOANG00000039658) #25	ENSOANG00000043201	ENSOANG00000037967	TTLL4 (ENSOANG00000050326)	PRKAG3 (ENSOANG00000043719)	CYP27A1 (ENSOANG00000009475) #26	WNT6 (ENSOANG00000048371)	WNT10A (ENSOANG00000036463)	CDK5R2 (ENSOANG00000049742)	FEV (ENSOANG00000045544)	CRYBA2 (ENSOANG00000041884)	ENSOANG00000045363	IHH (ENSOANG00000049852)
Theria	ANCESTRAL SPECIES	5	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00950000185166	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Diprotodontia	ANCESTRAL SPECIES	31	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Diprotodontia_a	ANCESTRAL SPECIES	30	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.k	ENSGT01050000244848.A.a.l	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
koala	MODERN SPECIES	98	TNS1 (ENSPCIG00000021440) #27	ENSPCIG00000021446	ENSPCIG00000032298	ENSPCIG00000034662	ARPC2 (ENSPCIG00000021450)	GPBAR1 (ENSPCIG00000021451)	AAMP (ENSPCIG00000021452)	ENSPCIG00000021454	TMBIM1 (ENSPCIG00000032815)	PNKD (ENSPCIG00000021457)	CATIP (ENSPCIG00000021460)	SLC11A1 (ENSPCIG00000020020)	CTDSP1 (ENSPCIG00000020018)	VIL1 (ENSPCIG00000016393)	USP37 (ENSPCIG00000016291) #21	CNOT9 (ENSPCIG00000016288) #22	PLCD4 (ENSPCIG00000016135) #23	ZNF142 (ENSPCIG00000016134) #24	BCS1L (ENSPCIG00000016133) #25	RNF25 (ENSPCIG00000016131)	STK36 (ENSPCIG00000016130)	TTLL4 (ENSPCIG00000016128)	CYP27A1 (ENSPCIG00000016125) #26	PRKAG3 (ENSPCIG00000011214)	WNT6 (ENSPCIG00000011120)	WNT10A (ENSPCIG00000011118)	CDK5R2 (ENSPCIG00000011115)	FEV (ENSPCIG00000011110)	CRYBA2 (ENSPCIG00000011108)	ENSPCIG00000011100	IHH (ENSPCIG00000011095)
Wallaby	MODERN SPECIES	5201																CNOT9 (ENSMEUG00000004418) #22
Tasmanian devil	MODERN SPECIES	2	TNP1 (ENSSHAG00000023054)	ENSSHAG00000022586	TNS1 (ENSSHAG00000017301) #27	ENSSHAG00000016873	ENSSHAG00000030658	ENSSHAG00000025920	ARPC2 (ENSSHAG00000022290)	ENSSHAG00000016509	TMBIM1 (ENSSHAG00000029053)	PNKD (ENSSHAG00000023370)	CATIP (ENSSHAG00000014194)	SLC11A1 (ENSSHAG00000016221)	CTDSP1 (ENSSHAG00000031744)	VIL1 (ENSSHAG00000016062)	USP37 (ENSSHAG00000015902) #21	CNOT9 (ENSSHAG00000015824) #22	PLCD4 (ENSSHAG00000015736) #23	BCS1L (ENSSHAG00000015660) #25	ZNF142 (ENSSHAG00000015673) #24	STK36 (ENSSHAG00000015575)	TTLL4 (ENSSHAG00000015496)	PRKAG3 (ENSSHAG00000015219)	ENSSHAG00000029676 #26	WNT6 (ENSSHAG00000030441)	WNT10A (ENSSHAG00000028653)	CDK5R2 (ENSSHAG00000021399)	FEV (ENSSHAG00000029082)	CRYBA2 (ENSSHAG00000014707)	CFAP65 (ENSSHAG00000014437)	IHH (ENSSHAG00000014306)	SLC23A3 (ENSSHAG00000013697)
Opossum	MODERN SPECIES	6	ENSMODG00000015512	ENSMODG00000015510	ENSMODG00000050077	ENSMODG00000046410	ENSMODG00000025420	ENSMODG00000015507	GPBAR1 (ENSMODG00000024870)	AAMP (ENSMODG00000015506)	TMBIM1 (ENSMODG00000015501)	PNKD (ENSMODG00000015497)	ENSMODG00000015494	SLC11A1 (ENSMODG00000015482)	CTDSP1 (ENSMODG00000015431)	VIL1 (ENSMODG00000015428)	USP37 (ENSMODG00000015421) #21	CNOT9 (ENSMODG00000015414) #22	PLCD4 (ENSMODG00000015407) #23	ENSMODG00000015404	BCS1L (ENSMODG00000015401) #25	RNF25 (ENSMODG00000015397)	STK36 (ENSMODG00000015388)	TTLL4 (ENSMODG00000015375)	CYP27A1 (ENSMODG00000015372) #26	PRKAG3 (ENSMODG00000015369)	WNT6 (ENSMODG00000015364)	WNT10A (ENSMODG00000015361)	CDK5R2 (ENSMODG00000015359)	FEV (ENSMODG00000015354)	ENSMODG00000043122	ENSMODG00000015348	ENSMODG00000027686
Eutheria	ANCESTRAL SPECIES	10	ENSGT01050000244848.A.a.h	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00950000185166	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00950000185166	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Suina	ANCESTRAL SPECIES	3	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Chacoan peccary	MODERN SPECIES	940	IGFBP5 (ENSCWAG00000006483) #28	TNP1 (ENSCWAG00000006457)	TNS1 (ENSCWAG00000005123) #27	RUFY4 (ENSCWAG00000005010)	ENSCWAG00000004999	ARPC2 (ENSCWAG00000004957)	GPBAR1 (ENSCWAG00000004950)	AAMP (ENSCWAG00000004853)	TMBIM1 (ENSCWAG00000004808)	PNKD (ENSCWAG00000004749)	CATIP (ENSCWAG00000004673)	SLC11A1 (ENSCWAG00000004603)	CTDSP1 (ENSCWAG00000004574)	VIL1 (ENSCWAG00000004429)	USP37 (ENSCWAG00000020257) #21	CNOT9 (ENSCWAG00000020235) #22	PLCD4 (ENSCWAG00000020155) #23	ENSCWAG00000020124	BCS1L (ENSCWAG00000020111) #25	RNF25 (ENSCWAG00000020094)	STK36 (ENSCWAG00000020071)	TTLL4 (ENSCWAG00000019882)	CYP27A1 (ENSCWAG00000019842) #26	PRKAG3 (ENSCWAG00000019794)	WNT6 (ENSCWAG00000019766)	WNT10A (ENSCWAG00000019744)	CDK5R2 (ENSCWAG00000019736)	FEV (ENSCWAG00000019728)	CRYBA2 (ENSCWAG00000019713)	CFAP65 (ENSCWAG00000019572)	IHH (ENSCWAG00000019532)
Pig	MODERN SPECIES	6	TNS1 (ENSSSCG00000027669) #27	RUFY4 (ENSSSCG00000016182)	ENSSSCG00000016184	ENSSSCG00000016183	ARPC2 (ENSSSCG00000016185)	GPBAR1 (ENSSSCG00000022483)	AAMP (ENSSSCG00000016189)	ENSSSCG00000060885	ENSSSCG00000016186	PNKD (ENSSSCG00000029002)	CATIP (ENSSSCG00000016187)	SLC11A1 (ENSSSCG00000039798)	CTDSP1 (ENSSSCG00000036938)	VIL1 (ENSSSCG00000016196)	USP37 (ENSSSCG00000016194) #21	CNOT9 (ENSSSCG00000016193) #22	PLCD4 (ENSSSCG00000016192) #23	ENSSSCG00000016191	BCS1L (ENSSSCG00000035775) #25	RNF25 (ENSSSCG00000016202)	STK36 (ENSSSCG00000026964)	TTLL4 (ENSSSCG00000016201)	CYP27A1 (ENSSSCG00000016199) #26	PRKAG3 (ENSSSCG00000016200)	WNT6 (ENSSSCG00000036932)	WNT10A (ENSSSCG00000026958)	CDK5R2 (ENSSSCG00000059789)	FEV (ENSSSCG00000035988)	CRYBA2 (ENSSSCG00000040776)	CFAP65 (ENSSSCG00000016203)	IHH (ENSSSCG00000016204)
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Camelidae	ANCESTRAL SPECIES	2	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Arabian camel	MODERN SPECIES	31	IGFBP5 (ENSCDRG00005016426) #28	TNP1 (ENSCDRG00005016467)	TNS1 (ENSCDRG00005016604) #27	RUFY4 (ENSCDRG00005017241)	ENSCDRG00005017303	ARPC2 (ENSCDRG00005017385)	GPBAR1 (ENSCDRG00005017425)	AAMP (ENSCDRG00005017449)	PNKD (ENSCDRG00005017602)	TMBIM1 (ENSCDRG00005017738)	CATIP (ENSCDRG00005017776)	SLC11A1 (ENSCDRG00005017805)	CTDSP1 (ENSCDRG00005017859)	VIL1 (ENSCDRG00005017921)	USP37 (ENSCDRG00005017998) #21	CNOT9 (ENSCDRG00005018120) #22	PLCD4 (ENSCDRG00005018172) #23	ENSCDRG00005018284	BCS1L (ENSCDRG00005018346) #25	RNF25 (ENSCDRG00005018384)	STK36 (ENSCDRG00005018460)	TTLL4 (ENSCDRG00005018698)	CYP27A1 (ENSCDRG00005000044) #26	PRKAG3 (ENSCDRG00005000055)	WNT6 (ENSCDRG00005000063)	WNT10A (ENSCDRG00005000075)	ENSCDRG00005000083	FEV (ENSCDRG00005000093)	CRYBA2 (ENSCDRG00005000127)	CFAP65 (ENSCDRG00005000170)	IHH (ENSCDRG00005000319)
Alpaca	MODERN SPECIES	1521									ARPC2 (ENSVPAG00000012258)	AAMP (ENSVPAG00000012260)	PNKD (ENSVPAG00000012262)	ENSVPAG00000012264	SLC11A1 (ENSVPAG00000012265)	ENSVPAG00000012266	USP37 (ENSVPAG00000012267) #21	CNOT9 (ENSVPAG00000012270) #22	PLCD4 (ENSVPAG00000012273) #23	RNF25 (ENSVPAG00000012275)	STK36 (ENSVPAG00000012276)	TTLL4 (ENSVPAG00000012277)	CYP27A1 (ENSVPAG00000012278) #26	WNT6 (ENSVPAG00000012279)
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00390000016794.a.a	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Cetacea	ANCESTRAL SPECIES	14	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00390000016794.a.a	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00390000016794.a.a	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.i	ENSGT01050000244848.A.a.h.j	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Dolphin	MODERN SPECIES	206														VIL1 (ENSTTRG00000010749)	USP37 (ENSTTRG00000010792) #21	CNOT9 (ENSTTRG00000010801) #22	PLCD4 (ENSTTRG00000010805) #23	ENSTTRG00000010810	BCS1L (ENSTTRG00000010814) #25	RNF25 (ENSTTRG00000010815)	STK36 (ENSTTRG00000010816)
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.i	ENSGT01050000244848.A.a.h.j	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.i	ENSGT01050000244848.A.a.h.j	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Narwhal	MODERN SPECIES	302	TNP1 (ENSMMNG00015006732)	TNS1 (ENSMMNG00015006588) #27	RUFY4 (ENSMMNG00015006488)	ENSMMNG00015006453	ENSMMNG00015006445	ARPC2 (ENSMMNG00015006416)	GPBAR1 (ENSMMNG00015006403)	AAMP (ENSMMNG00015006366)	TMBIM1 (ENSMMNG00015006338)	PNKD (ENSMMNG00015006301)	CATIP (ENSMMNG00015006268)	SLC11A1 (ENSMMNG00015006247)	CTDSP1 (ENSMMNG00015006213)	VIL1 (ENSMMNG00015006174)	USP37 (ENSMMNG00015006111) #21	CNOT9 (ENSMMNG00015006070) #22	PLCD4 (ENSMMNG00015006009) #23	ENSMMNG00015005968	BCS1L (ENSMMNG00015005949) #25	RNF25 (ENSMMNG00015005924)	STK36 (ENSMMNG00015005870)	TTLL4 (ENSMMNG00015005749)	CYP27A1 (ENSMMNG00015005674) #26	PRKAG3 (ENSMMNG00015005637)	WNT6 (ENSMMNG00015005610)	WNT10A (ENSMMNG00015005592)	CDK5R2 (ENSMMNG00015005580)	FEV (ENSMMNG00015005567)	CRYBA2 (ENSMMNG00015005549)	CFAP65 (ENSMMNG00015005484)	IHH (ENSMMNG00015005455)
Beluga whale	MODERN SPECIES	84	TNP1 (ENSDLEG00000011700)	TNS1 (ENSDLEG00000011725) #27	RUFY4 (ENSDLEG00000011866)	CXCR2 (ENSDLEG00000011899)	ENSDLEG00000011912	ARPC2 (ENSDLEG00000011925)	GPBAR1 (ENSDLEG00000011941)	AAMP (ENSDLEG00000011948)	PNKD (ENSDLEG00000011967)	TMBIM1 (ENSDLEG00000011997)	CATIP (ENSDLEG00000012018)	SLC11A1 (ENSDLEG00000012093)	CTDSP1 (ENSDLEG00000016713)	VIL1 (ENSDLEG00000016736)	USP37 (ENSDLEG00000016872) #21	CNOT9 (ENSDLEG00000016927) #22	PLCD4 (ENSDLEG00000016975) #23	ZNF142 (ENSDLEG00000017809)	BCS1L (ENSDLEG00000017902) #25	RNF25 (ENSDLEG00000017931)	STK36 (ENSDLEG00000018011)	TTLL4 (ENSDLEG00000018443)	CYP27A1 (ENSDLEG00000018796) #26	PRKAG3 (ENSDLEG00000018828)	WNT6 (ENSDLEG00000018852)	WNT10A (ENSDLEG00000018857)	CDK5R2 (ENSDLEG00000018862)	FEV (ENSDLEG00000018865)	CRYBA2 (ENSDLEG00000018870)	CFAP65 (ENSDLEG00000018889)	IHH (ENSDLEG00000018943)
Vaquita	MODERN SPECIES	18	TNP1 (ENSPSNG00000015249)	TNS1 (ENSPSNG00000014473) #27	RUFY4 (ENSPSNG00000014217)	ENSPSNG00000014184	ENSPSNG00000014161	ARPC2 (ENSPSNG00000014103)	GPBAR1 (ENSPSNG00000014071)	AAMP (ENSPSNG00000013763)	TMBIM1 (ENSPSNG00000013684)	PNKD (ENSPSNG00000013524)	CATIP (ENSPSNG00000013342)	SLC11A1 (ENSPSNG00000013161)	CTDSP1 (ENSPSNG00000013075)	VIL1 (ENSPSNG00000012747)	USP37 (ENSPSNG00000012626) #21	CNOT9 (ENSPSNG00000012552) #22	PLCD4 (ENSPSNG00000012217) #23	ENSPSNG00000012152	ENSPSNG00000012088	BCS1L (ENSPSNG00000012039) #25	RNF25 (ENSPSNG00000011955)	STK36 (ENSPSNG00000011860)	TTLL4 (ENSPSNG00000011722)	CYP27A1 (ENSPSNG00000011602) #26	PRKAG3 (ENSPSNG00000011370)	WNT6 (ENSPSNG00000011297)	WNT10A (ENSPSNG00000011245)	CDK5R2 (ENSPSNG00000011232)	FEV (ENSPSNG00000011170)	CRYBA2 (ENSPSNG00000011122)	CFAP65 (ENSPSNG00000010593)
Sperm whale	MODERN SPECIES	11	ATIC (ENSPCTG00005010239)	FN1 (ENSPCTG00005010889)	MREG (ENSPCTG00005017221)	PECR (ENSPCTG00005017315)	TMEM169 (ENSPCTG00005017414)	XRCC5 (ENSPCTG00005017451)	MARCH4 (ENSPCTG00005017507)	RPL37A (ENSPCTG00005017558)	TNP1 (ENSPCTG00005017658)	ENSPCTG00005017699	ENSPCTG00005017711	ENSPCTG00005017764	PNKD (ENSPCTG00005017792)	VIL1 (ENSPCTG00005017833)	USP37 (ENSPCTG00005017971) #21	CNOT9 (ENSPCTG00005018215) #22	PLCD4 (ENSPCTG00005018288) #23	ZNF142 (ENSPCTG00005018649)	BCS1L (ENSPCTG00005018671) #25	RNF25 (ENSPCTG00005018698)	STK36 (ENSPCTG00005018735)	TTLL4 (ENSPCTG00005018815)	ENSPCTG00005018949	WNT6 (ENSPCTG00005018979)	WNT10A (ENSPCTG00005019019)	CDK5R2 (ENSPCTG00005019049)	FEV (ENSPCTG00005019061)	CRYBA2 (ENSPCTG00005019097)	CFAP65 (ENSPCTG00005019150)	IHH (ENSPCTG00005019553)	ENSPCTG00005019578
Blue whale	MODERN SPECIES	18	TNP1 (ENSBMSG00010004074)	TNS1 (ENSBMSG00010004143) #27	RUFY4 (ENSBMSG00010004294)	ENSBMSG00010004305	ENSBMSG00010004313	ARPC2 (ENSBMSG00010004320)	GPBAR1 (ENSBMSG00010004340)	AAMP (ENSBMSG00010004353)	PNKD (ENSBMSG00010004445)	TMBIM1 (ENSBMSG00010004472)	CATIP (ENSBMSG00010004499)	SLC11A1 (ENSBMSG00010004527)	CTDSP1 (ENSBMSG00010004557)	VIL1 (ENSBMSG00010004591)	USP37 (ENSBMSG00010004662) #21	CNOT9 (ENSBMSG00010004706) #22	PLCD4 (ENSBMSG00010004724) #23	ENSBMSG00010004764	BCS1L (ENSBMSG00010004770) #25	RNF25 (ENSBMSG00010004780)	STK36 (ENSBMSG00010004792)	TTLL4 (ENSBMSG00010004810)	ENSBMSG00010004828	CYP27A1 (ENSBMSG00010004838) #26	PRKAG3 (ENSBMSG00010000199)	WNT6 (ENSBMSG00010000268)	WNT10A (ENSBMSG00010000304)	CDK5R2 (ENSBMSG00010000336)	ENSBMSG00010000352	FEV (ENSBMSG00010000362)	CRYBA2 (ENSBMSG00010000382)
Pecora	ANCESTRAL SPECIES	16	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.m	ENSGT01050000244848.A.a.h.n	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Percora_a	ANCESTRAL SPECIES	5	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.m	ENSGT01050000244848.A.a.h.n	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Bovidae	ANCESTRAL SPECIES	8	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.m	ENSGT01050000244848.A.a.h.n	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Caprinae	ANCESTRAL SPECIES	5	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.m	ENSGT01050000244848.A.a.h.n	ENSGT00390000016794.b.p.a	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Goat	MODERN SPECIES	11	ENSCHIG00000024380	ENSCHIG00000020838	ENSCHIG00000012101	ENSCHIG00000002910	ENSCHIG00000007721	GPBAR1 (ENSCHIG00000025833)	AAMP (ENSCHIG00000024008)	TMBIM1 (ENSCHIG00000025349)	PNKD (ENSCHIG00000002862)	CATIP (ENSCHIG00000017568)	ENSCHIG00000003580	SLC11A1 (ENSCHIG00000017190)	CTDSP1 (ENSCHIG00000022405)	VIL1 (ENSCHIG00000016310)	USP37 (ENSCHIG00000007660) #21	CNOT9 (ENSCHIG00000026257) #22	PLCD4 (ENSCHIG00000022545) #23	ENSCHIG00000022713	BCS1L (ENSCHIG00000009282) #25	RNF25 (ENSCHIG00000010384)	STK36 (ENSCHIG00000020004)	TTLL4 (ENSCHIG00000022274)	CYP27A1 (ENSCHIG00000025011) #26	PRKAG3 (ENSCHIG00000023341)	WNT6 (ENSCHIG00000023410)	WNT10A (ENSCHIG00000022853)	CDK5R2 (ENSCHIG00000012592)	FEV (ENSCHIG00000015312)	CRYBA2 (ENSCHIG00000020371)	CFAP65 (ENSCHIG00000015285)	IHH (ENSCHIG00000016564)
Rambouillet Sheep	MODERN SPECIES	11	TNS1 (ENSOARG00020025486) #27	RUFY4 (ENSOARG00020025590)	ENSOARG00020025597	ENSOARG00020025600	ENSOARG00020025604	AAMP (ENSOARG00020006548)	PNKD (ENSOARG00020006707)	TMBIM1 (ENSOARG00020006961)	CATIP (ENSOARG00020007041)	ENSOARG00020007154	SLC11A1 (ENSOARG00020007179)	CTDSP1 (ENSOARG00020007259)	ENSOARG00020007316	VIL1 (ENSOARG00020007377)	USP37 (ENSOARG00020007519) #21	CNOT9 (ENSOARG00020007920) #22	PLCD4 (ENSOARG00020007976) #23	ENSOARG00020008046	BCS1L (ENSOARG00020008102) #25	RNF25 (ENSOARG00020008163)	STK36 (ENSOARG00020008297)	TTLL4 (ENSOARG00020008478)	CYP27A1 (ENSOARG00020008639) #26	PRKAG3 (ENSOARG00020008702)	WNT6 (ENSOARG00020008888)	WNT10A (ENSOARG00020008936)	CDK5R2 (ENSOARG00020008961)	FEV (ENSOARG00020008978)	CRYBA2 (ENSOARG00020009010)	CFAP65 (ENSOARG00020009094)	IHH (ENSOARG00020009787)
Bovinae	ANCESTRAL SPECIES	5	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.n.b	ENSGT01050000244848.A.a.h.n.a	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
American bison	MODERN SPECIES	3330	TNP1 (ENSBBBG00000001609)	TNS1 (ENSBBBG00000009746) #27	RUFY4 (ENSBBBG00000009683)	ENSBBBG00000001578	ENSBBBG00000009678	ARPC2 (ENSBBBG00000009675)	GPBAR1 (ENSBBBG00000009664)	AAMP (ENSBBBG00000007245)	PNKD (ENSBBBG00000009649)	TMBIM1 (ENSBBBG00000001560)	CATIP (ENSBBBG00000009633)	SLC11A1 (ENSBBBG00000009627)	CTDSP1 (ENSBBBG00000009622)	VIL1 (ENSBBBG00000009616)	USP37 (ENSBBBG00000009603) #21	CNOT9 (ENSBBBG00000009564) #22	PLCD4 (ENSBBBG00000009557) #23	ENSBBBG00000009542	BCS1L (ENSBBBG00000009528) #25	RNF25 (ENSBBBG00000001540)	STK36 (ENSBBBG00000001539)	TTLL4 (ENSBBBG00000009504)	CYP27A1 (ENSBBBG00000009491) #26	PRKAG3 (ENSBBBG00000009488)	WNT6 (ENSBBBG00000009484)	WNT10A (ENSBBBG00000009483)	CDK5R2 (ENSBBBG00000009480)	CRYBA2 (ENSBBBG00000009479)	CFAP65 (ENSBBBG00000009477)	IHH (ENSBBBG00000009468)	NHEJ1 (ENSBBBG00000009466)
Bos	ANCESTRAL SPECIES	6	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.n.b	ENSGT01050000244848.A.a.h.n.a	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Bos_b	ANCESTRAL SPECIES	20	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.n.b	ENSGT01050000244848.A.a.h.n.a	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Cow	MODERN SPECIES	11	TNS1 (ENSBTAG00000002485) #27	RUFY4 (ENSBTAG00000003327)	CXCR2 (ENSBTAG00000038042)	CXCR1 (ENSBTAG00000026753)	ARPC2 (ENSBTAG00000010386)	GPBAR1 (ENSBTAG00000003923)	AAMP (ENSBTAG00000003927)	PNKD (ENSBTAG00000051631)	TMBIM1 (ENSBTAG00000003935)	PNKD (ENSBTAG00000003936)	CATIP (ENSBTAG00000003944)	SLC11A1 (ENSBTAG00000015520)	CTDSP1 (ENSBTAG00000008362)	VIL1 (ENSBTAG00000018543)	USP37 (ENSBTAG00000016572) #21	CNOT9 (ENSBTAG00000003807) #22	PLCD4 (ENSBTAG00000003809) #23	ZNF142 (ENSBTAG00000026772)	BCS1L (ENSBTAG00000003813) #25	RNF25 (ENSBTAG00000003817)	STK36 (ENSBTAG00000003819)	TTLL4 (ENSBTAG00000018415)	CYP27A1 (ENSBTAG00000013489) #26	PRKAG3 (ENSBTAG00000013492)	WNT6 (ENSBTAG00000013990)	WNT10A (ENSBTAG00000009217)	CDK5R2 (ENSBTAG00000031052)	FEV (ENSBTAG00000020191)	CRYBA2 (ENSBTAG00000014819)	CFAP65 (ENSBTAG00000026751)	IHH (ENSBTAG00000008452)
Hybrid Bos Indicus	MODERN SPECIES	11	ENSBIXG00005024424	TNS1 (ENSBIXG00005007182) #27	RUFY4 (ENSBIXG00005004085)	ENSBIXG00005023802	ENSBIXG00005005883	ARPC2 (ENSBIXG00005023758)	GPBAR1 (ENSBIXG00005023695)	AAMP (ENSBIXG00005004055)	PNKD (ENSBIXG00005023605)	TMBIM1 (ENSBIXG00005007076)	CATIP (ENSBIXG00005023503)	SLC11A1 (ENSBIXG00005023464)	CTDSP1 (ENSBIXG00005023395)	VIL1 (ENSBIXG00005023329)	USP37 (ENSBIXG00005023268) #21	CNOT9 (ENSBIXG00005023182) #22	PLCD4 (ENSBIXG00005023140) #23	ENSBIXG00005023078	BCS1L (ENSBIXG00005023013) #25	RNF25 (ENSBIXG00005022967)	STK36 (ENSBIXG00005022916)	TTLL4 (ENSBIXG00005022832)	CYP27A1 (ENSBIXG00005022772) #26	PRKAG3 (ENSBIXG00005022713)	WNT6 (ENSBIXG00005022659)	WNT10A (ENSBIXG00005022642)	CDK5R2 (ENSBIXG00005003865)	FEV (ENSBIXG00005022607)	CRYBA2 (ENSBIXG00005022597)	CFAP65 (ENSBIXG00005022540)	IHH (ENSBIXG00005022267)
Bos_a	ANCESTRAL SPECIES	4	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.n.b	ENSGT01050000244848.A.a.h.n.a	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Domestic yak	MODERN SPECIES	11	ENSBGRG00000002184	TNS1 (ENSBGRG00000001914) #27	RUFY4 (ENSBGRG00000001855)	ENSBGRG00000001832	ENSBGRG00000001827	ARPC2 (ENSBGRG00000001784)	GPBAR1 (ENSBGRG00000001769)	AAMP (ENSBGRG00000001746)	TMBIM1 (ENSBGRG00000001678)	PNKD (ENSBGRG00000001618)	CATIP (ENSBGRG00000001579)	SLC11A1 (ENSBGRG00000001439)	CTDSP1 (ENSBGRG00000001379)	VIL1 (ENSBGRG00000001312)	USP37 (ENSBGRG00000001165) #21	CNOT9 (ENSBGRG00000001130) #22	PLCD4 (ENSBGRG00000001098) #23	ENSBGRG00000001065	BCS1L (ENSBGRG00000001040) #25	RNF25 (ENSBGRG00000001002)	STK36 (ENSBGRG00000000918)	TTLL4 (ENSBGRG00000000831)	CYP27A1 (ENSBGRG00000000784) #26	PRKAG3 (ENSBGRG00000000724)	WNT6 (ENSBGRG00000000692)	WNT10A (ENSBGRG00000000672)	CDK5R2 (ENSBGRG00000000662)	FEV (ENSBGRG00000000650)	CRYBA2 (ENSBGRG00000000636)	CFAP65 (ENSBGRG00000000510)	IHH (ENSBGRG00000000478)
Wild yak	MODERN SPECIES	262	TNS1 (ENSBMUG00000025841) #27	RUFY4 (ENSBMUG00000025853)	ENSBMUG00000025854	ENSBMUG00000025858	ARPC2 (ENSBMUG00000025863)	GPBAR1 (ENSBMUG00000025868)	AAMP (ENSBMUG00000025870)	PNKD (ENSBMUG00000025880)	TMBIM1 (ENSBMUG00000025882)	ENSBMUG00000025887	CATIP (ENSBMUG00000025893)	SLC11A1 (ENSBMUG00000025898)	CTDSP1 (ENSBMUG00000025903)	VIL1 (ENSBMUG00000025916)	USP37 (ENSBMUG00000025936) #21	CNOT9 (ENSBMUG00000025942) #22	PLCD4 (ENSBMUG00000025954) #23	ENSBMUG00000025970	BCS1L (ENSBMUG00000025973) #25	RNF25 (ENSBMUG00000025976)	STK36 (ENSBMUG00000025981)	TTLL4 (ENSBMUG00000025991)	ENSBMUG00000025993	CYP27A1 (ENSBMUG00000026005) #26	PRKAG3 (ENSBMUG00000026007)	WNT6 (ENSBMUG00000026009)	WNT10A (ENSBMUG00000026013)	ENSBMUG00000026015	FEV (ENSBMUG00000026019)	CRYBA2 (ENSBMUG00000026021)	CFAP65 (ENSBMUG00000026047)
Siberian musk deer	MODERN SPECIES	352	TNS1 (ENSMMSG00000015987) #27	RUFY4 (ENSMMSG00000016588)	ENSMMSG00000016647	ENSMMSG00000016662	ENSMMSG00000016686	ARPC2 (ENSMMSG00000016731)	GPBAR1 (ENSMMSG00000016766)	AAMP (ENSMMSG00000016789)	PNKD (ENSMMSG00000016919)	TMBIM1 (ENSMMSG00000016995)	CATIP (ENSMMSG00000017022)	SLC11A1 (ENSMMSG00000017070)	CTDSP1 (ENSMMSG00000017093)	VIL1 (ENSMMSG00000017148)	USP37 (ENSMMSG00000017309) #21	CNOT9 (ENSMMSG00000017385) #22	PLCD4 (ENSMMSG00000017421) #23	ENSMMSG00000017469	BCS1L (ENSMMSG00000017492) #25	RNF25 (ENSMMSG00000017525)	STK36 (ENSMMSG00000017568)	TTLL4 (ENSMMSG00000017658)	CYP27A1 (ENSMMSG00000017780) #26	PRKAG3 (ENSMMSG00000017891)	WNT6 (ENSMMSG00000017986)	WNT10A (ENSMMSG00000018012)	CDK5R2 (ENSMMSG00000018049)	FEV (ENSMMSG00000018069)	CRYBA2 (ENSMMSG00000018103)	CFAP65 (ENSMMSG00000018168)	IHH (ENSMMSG00000018411)
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	596																ENSCHYG00000016194 #22
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	31	ENSCHYG00000002840	TNS1 (ENSCHYG00000002447) #27	RUFY4 (ENSCHYG00000002304)	ENSCHYG00000002290	ENSCHYG00000002280	ENSCHYG00000002201	GPBAR1 (ENSCHYG00000002188)	AAMP (ENSCHYG00000002144)	TMBIM1 (ENSCHYG00000002103)	PNKD (ENSCHYG00000002024)	CATIP (ENSCHYG00000001958)	SLC11A1 (ENSCHYG00000001919)	CTDSP1 (ENSCHYG00000001880)	VIL1 (ENSCHYG00000001829)	USP37 (ENSCHYG00000001693) #21	CNOT9 (ENSCHYG00000001629) #22	PLCD4 (ENSCHYG00000001587) #23	ENSCHYG00000001556	BCS1L (ENSCHYG00000001534) #25	RNF25 (ENSCHYG00000001498)	STK36 (ENSCHYG00000001439)	TTLL4 (ENSCHYG00000001312)	CYP27A1 (ENSCHYG00000001246) #26	PRKAG3 (ENSCHYG00000001210)	WNT6 (ENSCHYG00000001192)	WNT10A (ENSCHYG00000001166)	ENSCHYG00000001150	FEV (ENSCHYG00000001142)	CRYBA2 (ENSCHYG00000001123)	CFAP65 (ENSCHYG00000000994)	IHH (ENSCHYG00000000953)
Yarkand deer	MODERN SPECIES	32	C1orf35 (ENSCHYG00000010289)	MRPL55 (ENSCHYG00000010212)	GUK1 (ENSCHYG00000010059)	GJC2 (ENSCHYG00000010036)	IBA57 (ENSCHYG00000010014)	ENSCHYG00000009985	ENSCHYG00000009774	ENSCHYG00000009620	TRIM11 (ENSCHYG00000009542)	TRIM17 (ENSCHYG00000009461)	H3-4 (ENSCHYG00000009438)	H2AC25 (ENSCHYG00000009419)	ENSCHYG00000009390	RNF187 (ENSCHYG00000009353)	ENSCHYG00000009333	ENSCHYG00000009280 #22	ZFP2 (ENSCHYG00000009266)	ZNF454 (ENSCHYG00000009231)	GRM6 (ENSCHYG00000025499)	ZNF879 (ENSCHYG00000025473)	ZNF354C (ENSCHYG00000025442)	ENSCHYG00000025422	ADAMTS2 (ENSCHYG00000025226)	RUFY1 (ENSCHYG00000025163)	HNRNPH1 (ENSCHYG00000025070)	ENSCHYG00000025060	ENSCHYG00000025054	ENSCHYG00000025001	CANX (ENSCHYG00000024917)	MAML1 (ENSCHYG00000024853)	LTC4S (ENSCHYG00000024793)
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Carnivora	ANCESTRAL SPECIES	17	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00390000016794.a.a	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Caniformia	ANCESTRAL SPECIES	14	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00390000016794.a.a	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00390000016794.a.a	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Ursidae	ANCESTRAL SPECIES	7	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.s	ENSGT01050000244848.A.a.h.t	ENSGT01000000214669	ENSGT00390000016794.b	ENSGT00390000016794.a.a	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299.j	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306.b	ENSGT00430000031142	ENSGT00940000159207
Ursus	ANCESTRAL SPECIES	12	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.s	ENSGT01050000244848.A.a.h.t	ENSGT00390000016794.b	ENSGT00390000016794.a.a	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000160299.j	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306.b	ENSGT00430000031142	ENSGT00940000159207	ENSGT00390000009940
Polar bear	MODERN SPECIES	169	IGFBP5 (ENSUMAG00000020139) #28	TNP1 (ENSUMAG00000020130)	TNS1 (ENSUMAG00000019767) #27	RUFY4 (ENSUMAG00000019692)	ENSUMAG00000019690	ENSUMAG00000019687	ARPC2 (ENSUMAG00000019684)	AAMP (ENSUMAG00000019658)	TMBIM1 (ENSUMAG00000019650)	PNKD (ENSUMAG00000019639)	CATIP (ENSUMAG00000019632)	SLC11A1 (ENSUMAG00000019626)	ENSUMAG00000019623	VIL1 (ENSUMAG00000019612)	USP37 (ENSUMAG00000019569) #21	CNOT9 (ENSUMAG00000019561) #22	PLCD4 (ENSUMAG00000019526) #23	ENSUMAG00000019512 #24	BCS1L (ENSUMAG00000019508) #25	RNF25 (ENSUMAG00000019502)	STK36 (ENSUMAG00000019490)	TTLL4 (ENSUMAG00000019111)	CYP27A1 (ENSUMAG00000019085) #26	PRKAG3 (ENSUMAG00000019077)	WNT10A (ENSUMAG00000019072)	ENSUMAG00000019064	CRYBA2 (ENSUMAG00000019060)	CFAP65 (ENSUMAG00000019016)	ENSUMAG00000019009	NHEJ1 (ENSUMAG00000019002)	SLC23A3 (ENSUMAG00000018986)
American black bear	MODERN SPECIES	833																CNOT9 (ENSUAMG00000021194) #22	PLCD4 (ENSUAMG00000021202) #23	ENSUAMG00000021205	BCS1L (ENSUAMG00000021210) #25	RNF25 (ENSUAMG00000021212)	ENSUAMG00000021214	ENSUAMG00000021220	TTLL4 (ENSUAMG00000021237)	ENSUAMG00000021460	CYP27A1 (ENSUAMG00000021461) #26	PRKAG3 (ENSUAMG00000021463)
Giant Panda	MODERN SPECIES	11	ENSAMEG00000024718 #27	RUFY4 (ENSAMEG00000003231)	ENSAMEG00000024818	ENSAMEG00000027084	ENSAMEG00000031447	ENSAMEG00000003220	ARPC2 (ENSAMEG00000003197)	GPBAR1 (ENSAMEG00000027970)	AAMP (ENSAMEG00000003150)	PNKD (ENSAMEG00000003089)	TMBIM1 (ENSAMEG00000003102)	CATIP (ENSAMEG00000003080)	SLC11A1 (ENSAMEG00000003017)	VIL1 (ENSAMEG00000002998)	USP37 (ENSAMEG00000002927) #21	CNOT9 (ENSAMEG00000002901) #22	PLCD4 (ENSAMEG00000002833) #23	ENSAMEG00000002817	BCS1L (ENSAMEG00000002795) #25	RNF25 (ENSAMEG00000002779)	STK36 (ENSAMEG00000002752)	TTLL4 (ENSAMEG00000025278)	CYP27A1 (ENSAMEG00000002714) #26	PRKAG3 (ENSAMEG00000002676)	WNT6 (ENSAMEG00000002665)	WNT10A (ENSAMEG00000002646)	FEV (ENSAMEG00000002639)	CRYBA2 (ENSAMEG00000002615)	CFAP65 (ENSAMEG00000002575)	IHH (ENSAMEG00000027416)	NHEJ1 (ENSAMEG00000002562)
Mustelinae	ANCESTRAL SPECIES	35	ENSGT00390000016988.b	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Ferret	MODERN SPECIES	253	TNP1 (ENSMPUG00000016502)	TNS1 (ENSMPUG00000016505) #27	RUFY4 (ENSMPUG00000016509)	ENSMPUG00000019616	ENSMPUG00000016511	ARPC2 (ENSMPUG00000016512)	GPBAR1 (ENSMPUG00000019618)	AAMP (ENSMPUG00000016514)	TMBIM1 (ENSMPUG00000016517)	PNKD (ENSMPUG00000016531)	CATIP (ENSMPUG00000016532)	SLC11A1 (ENSMPUG00000016533)	CTDSP1 (ENSMPUG00000016534)	VIL1 (ENSMPUG00000016535)	USP37 (ENSMPUG00000016536) #21	CNOT9 (ENSMPUG00000016537) #22	PLCD4 (ENSMPUG00000016538) #23	ENSMPUG00000016539	BCS1L (ENSMPUG00000016540) #25	RNF25 (ENSMPUG00000016541)	STK36 (ENSMPUG00000016546)	TTLL4 (ENSMPUG00000016547)	CYP27A1 (ENSMPUG00000016548) #26	PRKAG3 (ENSMPUG00000016549)	WNT6 (ENSMPUG00000016550)	WNT10A (ENSMPUG00000016551)	FEV (ENSMPUG00000016552)	CRYBA2 (ENSMPUG00000016553)	CFAP65 (ENSMPUG00000016555)	IHH (ENSMPUG00000016557)	NHEJ1 (ENSMPUG00000016563)
American mink	MODERN SPECIES	15	RUFY4 (ENSNVIG00000022206)	ENSNVIG00000022212	ENSNVIG00000022215	ENSNVIG00000022218	ARPC2 (ENSNVIG00000022239)	GPBAR1 (ENSNVIG00000022265)	AAMP (ENSNVIG00000022272)	PNKD (ENSNVIG00000022286)	ENSNVIG00000022304	ENSNVIG00000022310	CATIP (ENSNVIG00000022315)	SLC11A1 (ENSNVIG00000022328)	CTDS1 (ENSNVIG00000022342)	VIL1 (ENSNVIG00000022355)	USP37 (ENSNVIG00000022378) #21	CNOT9 (ENSNVIG00000022486) #22	PLCD4 (ENSNVIG00000022510) #23	ENSNVIG00000022533	BCS1 (ENSNVIG00000022539) #25	RNF25 (ENSNVIG00000022548)	STK36 (ENSNVIG00000022555)	TTLL4 (ENSNVIG00000022578)	CYP27A1 (ENSNVIG00000022659) #26	PRKAG3 (ENSNVIG00000022666)	WNT6 (ENSNVIG00000022672)	WNT10A (ENSNVIG00000022675)	CDK5R2 (ENSNVIG00000022677)	FEV (ENSNVIG00000022682)	CRYBA2 (ENSNVIG00000022687)	CFAP65 (ENSNVIG00000022699)	IHH (ENSNVIG00000022725)
Canidae	ANCESTRAL SPECIES	20	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.u	ENSGT01050000244848.A.a.h.v	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Canis_lupus	ANCESTRAL SPECIES	32	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.u	ENSGT01050000244848.A.a.h.v	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Dingo	MODERN SPECIES	398	ENSCAFG00020027115 #27	RUFY4 (ENSCAFG00020027113)	ENSCAFG00020027111	ENSCAFG00020027108	ARPC2 (ENSCAFG00020027106)	GPBAR1 (ENSCAFG00020027104)	AAMP (ENSCAFG00020027101)	ENSCAFG00020027098	TMBIM1 (ENSCAFG00020027095)	PNKD (ENSCAFG00020027093)	CATIP (ENSCAFG00020027091)	SLC11A1 (ENSCAFG00020027086)	CTDSP1 (ENSCAFG00020027080)	VIL1 (ENSCAFG00020027076)	USP37 (ENSCAFG00020027067) #21	CNOT9 (ENSCAFG00020027062) #22	PLCD4 (ENSCAFG00020027058) #23	ENSCAFG00020027052	BCS1L (ENSCAFG00020027051) #25	RNF25 (ENSCAFG00020027049)	ENSCAFG00020027048	ENSCAFG00020027047	TTLL4 (ENSCAFG00020027046)	CYP27A1 (ENSCAFG00020027045) #26	PRKAG3 (ENSCAFG00020027043)	WNT6 (ENSCAFG00020027041)	WNT10A (ENSCAFG00020027039)	CDK5R2 (ENSCAFG00020027038)	FEV (ENSCAFG00020027037)	CRYBA2 (ENSCAFG00020027036)	CFAP65 (ENSCAFG00020027029)
Dog	MODERN SPECIES	30	TNP1 (ENSCAFG00845025043)	TNS1 (ENSCAFG00845025209) #27	RUFY4 (ENSCAFG00845026363)	CXCR2 (ENSCAFG00845026443)	ENSCAFG00845026477	ARPC2 (ENSCAFG00845026524)	GPBAR1 (ENSCAFG00845026665)	AAMP (ENSCAFG00845026688)	PNKD (ENSCAFG00845026766)	TMBIM1 (ENSCAFG00845026892)	CATIP (ENSCAFG00845027011)	SLC11A1 (ENSCAFG00845027087)	CTDSP1 (ENSCAFG00845027186)	VIL1 (ENSCAFG00845027330)	USP37 (ENSCAFG00845027522) #21	CNOT9 (ENSCAFG00845027753) #22	PLCD4 (ENSCAFG00845027787) #23	ENSCAFG00845027833	BCS1L (ENSCAFG00845027882) #25	RNF25 (ENSCAFG00845027929)	STK36 (ENSCAFG00845028016)	TTLL4 (ENSCAFG00845028151)	CYP27A1 (ENSCAFG00845028313) #26	PRKAG3 (ENSCAFG00845028465)	WNT6 (ENSCAFG00845028514)	WNT10A (ENSCAFG00845028544)	FEV (ENSCAFG00845028578)	CRYBA2 (ENSCAFG00845028604)	CFAP65 (ENSCAFG00845028693)	IHH (ENSCAFG00845028975)	NHEJ1 (ENSCAFG00845028988)
Red fox	MODERN SPECIES	39	TNS1 (ENSVVUG00000007426) #27	RUFY4 (ENSVVUG00000007396)	ENSVVUG00000007393	ENSVVUG00000007390	ARPC2 (ENSVVUG00000007377)	GPBAR1 (ENSVVUG00000007375)	AAMP (ENSVVUG00000007372)	TMBIM1 (ENSVVUG00000007365)	PNKD (ENSVVUG00000007348)	CATIP (ENSVVUG00000007337)	SLC11A1 (ENSVVUG00000005767)	CTDSP1 (ENSVVUG00000005695)	VIL1 (ENSVVUG00000004095)	TMA7 (ENSVVUG00000003985)	USP37 (ENSVVUG00000003502) #21	CNOT9 (ENSVVUG00000003469) #22	PLCD4 (ENSVVUG00000003179) #23	ENSVVUG00000003097	BCS1L (ENSVVUG00000003071) #25	RNF25 (ENSVVUG00000002796)	STK36 (ENSVVUG00000002330)	TTLL4 (ENSVVUG00000001146)	CYP27A1 (ENSVVUG00000001035) #26	PRKAG3 (ENSVVUG00000000989)	WNT6 (ENSVVUG00000000977)	WNT10A (ENSVVUG00000000971)	CDK5R2 (ENSVVUG00000000932)	CRYBA2 (ENSVVUG00000000927)	CFAP65 (ENSVVUG00000000403)	IHH (ENSVVUG00000000214)	ENSVVUG00000000136
Felidae	ANCESTRAL SPECIES	15	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.w	ENSGT01050000244848.A.a.h.x	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Panthera	ANCESTRAL SPECIES	9	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.w	ENSGT01050000244848.A.a.h.x	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h.w	ENSGT01050000244848.A.a.h.x	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
leopard	MODERN SPECIES	12	RUFY4 (ENSPPRG00000021039)	ENSPPRG00000021734	ENSPPRG00000021746	ARPC2 (ENSPPRG00000022071)	GPBAR1 (ENSPPRG00000021788)	AAMP (ENSPPRG00000023914)	ENSPPRG00000023854	TMBIM1 (ENSPPRG00000023780)	PNKD (ENSPPRG00000023720)	CATIP (ENSPPRG00000023705)	SLC11A1 (ENSPPRG00000023565)	CTDSP1 (ENSPPRG00000023051)	ENSPPRG00000000614	VIL1 (ENSPPRG00000000854)	USP37 (ENSPPRG00000002413) #21	CNOT9 (ENSPPRG00000002827) #22	PLCD4 (ENSPPRG00000003858) #23	ENSPPRG00000004287	BCS1L (ENSPPRG00000005159) #25	RNF25 (ENSPPRG00000005371)	STK36 (ENSPPRG00000006965)	TTLL4 (ENSPPRG00000008390)	ENSPPRG00000008414	CYP27A1 (ENSPPRG00000008560) #26	PRKAG3 (ENSPPRG00000008754)	WNT6 (ENSPPRG00000008814)	WNT10A (ENSPPRG00000008877)	CDK5R2 (ENSPPRG00000022058)	FEV (ENSPPRG00000009437)	CRYBA2 (ENSPPRG00000009580)	CFAP65 (ENSPPRG00000012363)
lion	MODERN SPECIES	8	ENSPLOG00000021740	TNS1 (ENSPLOG00000021451) #27	RUFY4 (ENSPLOG00000021337)	ENSPLOG00000021316	ENSPLOG00000021306	ARPC2 (ENSPLOG00000021264)	GPBAR1 (ENSPLOG00000021239)	AAMP (ENSPLOG00000021079)	TMBIM1 (ENSPLOG00000020963)	PNKD (ENSPLOG00000020806)	CATIP (ENSPLOG00000020683)	SLC11A1 (ENSPLOG00000020625)	CTDSP1 (ENSPLOG00000020517)	VIL1 (ENSPLOG00000020362)	USP37 (ENSPLOG00000020198) #21	CNOT9 (ENSPLOG00000020058) #22	PLCD4 (ENSPLOG00000019831) #23	ZNF142 (ENSPLOG00000019762) #24	BCS1L (ENSPLOG00000019725) #25	RNF25 (ENSPLOG00000019651)	STK36 (ENSPLOG00000019317)	TTLL4 (ENSPLOG00000018947)	CYP27A1 (ENSPLOG00000018821) #26	PRKAG3 (ENSPLOG00000018692)	WNT6 (ENSPLOG00000018620)	WNT10A (ENSPLOG00000018566)	CDK5R2 (ENSPLOG00000018482)	FEV (ENSPLOG00000018437)	CRYBA2 (ENSPLOG00000018385)	ENSPLOG00000018325	IHH (ENSPLOG00000018217)
Tiger	MODERN SPECIES	240	IGFBP5 (ENSPTIG00000001085) #28	TNP1 (ENSPTIG00000003475)	TNS1 (ENSPTIG00000004935) #27	RUFY4 (ENSPTIG00000016982)	ENSPTIG00000005017	ENSPTIG00000005030	ARPC2 (ENSPTIG00000019063)	AAMP (ENSPTIG00000019616)	PNKD (ENSPTIG00000021040)	TMBIM1 (ENSPTIG00000000242)	CATIP (ENSPTIG00000003791)	SLC11A1 (ENSPTIG00000006510)	CTDSP1 (ENSPTIG00000006919)	VIL1 (ENSPTIG00000007734)	USP37 (ENSPTIG00000008571) #21	CNOT9 (ENSPTIG00000012383) #22	PLCD4 (ENSPTIG00000014030) #23	ENSPTIG00000018208	BCS1L (ENSPTIG00000019626) #25	RNF25 (ENSPTIG00000020459)	STK36 (ENSPTIG00000020784)	TTLL4 (ENSPTIG00000021669)	CYP27A1 (ENSPTIG00000005452) #26	PRKAG3 (ENSPTIG00000006300)	WNT10A (ENSPTIG00000006806)	ENSPTIG00000005440	CRYBA2 (ENSPTIG00000007397)	CFAP65 (ENSPTIG00000008075)	ENSPTIG00000013562	NHEJ1 (ENSPTIG00000014677)	SLC23A3 (ENSPTIG00000015352)
Cat	MODERN SPECIES	239	TNP1 (ENSFCAG00000036860)	TNS1 (ENSFCAG00000001073) #27	RUFY4 (ENSFCAG00000002367)	ENSFCAG00000023545	ENSFCAG00000026553	ARPC2 (ENSFCAG00000002370)	GPBAR1 (ENSFCAG00000035028)	AAMP (ENSFCAG00000002372)	PNKD (ENSFCAG00000002373)	TMBIM1 (ENSFCAG00000002374)	CATIP (ENSFCAG00000002376)	SLC11A1 (ENSFCAG00000002377)	CTDSP1 (ENSFCAG00000002378)	VIL1 (ENSFCAG00000002379)	USP37 (ENSFCAG00000002380) #21	CNOT9 (ENSFCAG00000034905) #22	PLCD4 (ENSFCAG00000004152) #23	ENSFCAG00000024599	BCS1L (ENSFCAG00000004154) #25	RNF25 (ENSFCAG00000004155)	STK36 (ENSFCAG00000004156)	TTLL4 (ENSFCAG00000038954)	CYP27A1 (ENSFCAG00000007063) #26	PRKAG3 (ENSFCAG00000007064)	WNT6 (ENSFCAG00000043651)	WNT10A (ENSFCAG00000044254)	CDK5R2 (ENSFCAG00000043220)	FEV (ENSFCAG00000045613)	CRYBA2 (ENSFCAG00000007487)	CFAP65 (ENSFCAG00000007488)	IHH (ENSFCAG00000029276)
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Equus	ANCESTRAL SPECIES	51	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Horse	MODERN SPECIES	27	ENSECAG00000054451	TNP1 (ENSECAG00000014618)	TNS1 (ENSECAG00000014711) #27	RUFY4 (ENSECAG00000011221)	ENSECAG00000006595	ARPC2 (ENSECAG00000011456)	GPBAR1 (ENSECAG00000006763)	AAMP (ENSECAG00000014821)	PNKD (ENSECAG00000013322)	TMBIM1 (ENSECAG00000011922)	CATIP (ENSECAG00000015642)	SLC11A1 (ENSECAG00000015807)	CTDSP1 (ENSECAG00000008950)	VIL1 (ENSECAG00000010006)	USP37 (ENSECAG00000018200) #21	CNOT9 (ENSECAG00000059139) #22	PLCD4 (ENSECAG00000012582) #23	ZNF142 (ENSECAG00000017751)	BCS1L (ENSECAG00000000224) #25	RNF25 (ENSECAG00000009063)	STK36 (ENSECAG00000010391)	TTLL4 (ENSECAG00000049252)	CYP27A1 (ENSECAG00000019737) #26	PRKAG3 (ENSECAG00000002430)	WNT6 (ENSECAG00000013092)	WNT10A (ENSECAG00000037351)	CDK5R2 (ENSECAG00000006781)	FEV (ENSECAG00000016026)	CRYBA2 (ENSECAG00000015100)	CFAP65 (ENSECAG00000019457)	IHH (ENSECAG00000003802)
Donkey	MODERN SPECIES	10	ENSEASG00005012541 #27	RUFY4 (ENSEASG00005012495)	ENSEASG00005025425	ENSEASG00005035202	ARPC2 (ENSEASG00005012481)	GPBAR1 (ENSEASG00005012478)	AAMP (ENSEASG00005012433)	ENSEASG00005031536	TMBIM1 (ENSEASG00005033706)	PNKD (ENSEASG00005012391)	CATIP (ENSEASG00005012386)	SLC11A1 (ENSEASG00005012373)	CTDSP1 (ENSEASG00005012367)	VIL1 (ENSEASG00005012350)	USP37 (ENSEASG00005012329) #21	CNOT9 (ENSEASG00005012317) #22	ENSEASG00005012281	BCS1L (ENSEASG00005012277) #25	RNF25 (ENSEASG00005012269)	STK36 (ENSEASG00005012230)	ENSEASG00005029569	TTLL4 (ENSEASG00005012028)	CYP27A1 (ENSEASG00005011961) #26	PRKAG3 (ENSEASG00005011895)	WNT6 (ENSEASG00005011874)	WNT10A (ENSEASG00005011873)	CDK5R2 (ENSEASG00005033666)	FEV (ENSEASG00005013506)	CRYBA2 (ENSEASG00005011870)	CFAP65 (ENSEASG00005011849)	IHH (ENSEASG00005024990)
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Megabat	MODERN SPECIES	1809					ARPC2 (ENSPVAG00000017133)	AAMP (ENSPVAG00000017136)	ENSPVAG00000017138	ENSPVAG00000024093	TMBIM1 (ENSPVAG00000017140)	ENSPVAG00000017142	CATIP (ENSPVAG00000017143)	SLC11A1 (ENSPVAG00000017144)	CTDSP1 (ENSPVAG00000017147)	VIL1 (ENSPVAG00000017149)	USP37 (ENSPVAG00000017151) #21	CNOT9 (ENSPVAG00000017152) #22	PLCD4 (ENSPVAG00000017153) #23	ENSPVAG00000017154	BCS1L (ENSPVAG00000017155) #25	RNF25 (ENSPVAG00000017156)	STK36 (ENSPVAG00000017158)	TTLL4 (ENSPVAG00000017160)	CYP27A1 (ENSPVAG00000017165) #26	PRKAG3 (ENSPVAG00000017167)	WNT6 (ENSPVAG00000017168)	WNT10A (ENSPVAG00000017170)	CDK5R2 (ENSPVAG00000017171)
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Microbat	MODERN SPECIES	940	ENSMLUG00000000762	IGFBP2 (ENSMLUG00000000766) #29	IGFBP5 (ENSMLUG00000025891) #28	TNP1 (ENSMLUG00000000771)	TNS1 (ENSMLUG00000007467) #27	ENSMLUG00000004877	ENSMLUG00000004884	ENSMLUG00000027148	ENSMLUG00000024395	ENSMLUG00000004161	GPBAR1 (ENSMLUG00000004103)	AAMP (ENSMLUG00000004115)	ENSMLUG00000027073	TMBIM1 (ENSMLUG00000004137)	PNKD (ENSMLUG00000004125)	CNOT9 (ENSMLUG00000001502) #22	PLCD4 (ENSMLUG00000001505) #23	RNF25 (ENSMLUG00000001521)	ENSMLUG00000001511	BCS1L (ENSMLUG00000001520) #25	STK36 (ENSMLUG00000001524)	TTLL4 (ENSMLUG00000007509)	CYP27A1 (ENSMLUG00000004097) #26	PRKAG3 (ENSMLUG00000004110)	WNT6 (ENSMLUG00000011087)	WNT10A (ENSMLUG00000011090)	CDK5R2 (ENSMLUG00000011393)	FEV (ENSMLUG00000011400)	CRYBA2 (ENSMLUG00000011404)	CFAP65 (ENSMLUG00000011424)	IHH (ENSMLUG00000011503)
Greater horseshoe bat	MODERN SPECIES	26	TNS1 (ENSRFEG00010012495) #27	RUFY4 (ENSRFEG00010012383)	ENSRFEG00010012351	ENSRFEG00010012292	ENSRFEG00010012266	ARPC2 (ENSRFEG00010012227)	GPBAR1 (ENSRFEG00010012194)	AAMP (ENSRFEG00010011746)	TMBIM1 (ENSRFEG00010011655)	PNKD (ENSRFEG00010011406)	CATIP (ENSRFEG00010011346)	SLC11A1 (ENSRFEG00010011285)	CTDSP1 (ENSRFEG00010011217)	VIL1 (ENSRFEG00010011035)	USP37 (ENSRFEG00010010894) #21	CNOT9 (ENSRFEG00010010828) #22	PLCD4 (ENSRFEG00010010727) #23	ENSRFEG00010010661	BCS1L (ENSRFEG00010010532) #25	RNF25 (ENSRFEG00010010472)	STK36 (ENSRFEG00010009998)	TTLL4 (ENSRFEG00010009497)	CYP27A1 (ENSRFEG00010009435) #26	PRKAG3 (ENSRFEG00010009316)	WNT6 (ENSRFEG00010009291)	WNT10A (ENSRFEG00010009243)	CDK5R2 (ENSRFEG00010009228)	FEV (ENSRFEG00010009194)	CRYBA2 (ENSRFEG00010009131)	CFAP65 (ENSRFEG00010008702)	IHH (ENSRFEG00010008660)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000001225 #22
Hedgehog	MODERN SPECIES	4153																CNOT9 (ENSEEUG00000001738) #22
Common shrew	MODERN SPECIES	2452																CNOT9 (ENSSARG00000010872) #22
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00950000185166	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Tree shrew	MODERN SPECIES	1206														VIL1 (ENSTBEG00000017096)	USP37 (ENSTBEG00000010258) #21	CNOT9 (ENSTBEG00000011140) #22	ENSTBEG00000011256 #23	ZNF142 (ENSTBEG00000011385) #24	BCS1L (ENSTBEG00000011958) #25	RNF25 (ENSTBEG00000012303)	STK36 (ENSTBEG00000012469)	TTLL4 (ENSTBEG00000012900)	CYP27A1 (ENSTBEG00000013927) #26	PRKAG3 (ENSTBEG00000014203)
Glires	ANCESTRAL SPECIES	14	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Lagomorpha	ANCESTRAL SPECIES	13	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00940000163279	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Rabbit	MODERN SPECIES	18	ENSOCUG00000017762	ENSOCUG00000038537	TNS1 (ENSOCUG00000001963) #27	RUFY4 (ENSOCUG00000022248)	CXCR2 (ENSOCUG00000025638)	CXCR1 (ENSOCUG00000015108)	ARPC2 (ENSOCUG00000005516)	GPBAR1 (ENSOCUG00000005521)	AAMP (ENSOCUG00000023014)	PNKD (ENSOCUG00000016574)	TMBIM1 (ENSOCUG00000005524)	CATIP (ENSOCUG00000012413)	SLC11A1 (ENSOCUG00000016027)	VIL1 (ENSOCUG00000027685)	USP37 (ENSOCUG00000012513) #21	CNOT9 (ENSOCUG00000001981) #22	PLCD4 (ENSOCUG00000001986) #23	ENSOCUG00000001998	BCS1L (ENSOCUG00000002003) #25	RNF25 (ENSOCUG00000020986)	STK36 (ENSOCUG00000002008)	TTLL4 (ENSOCUG00000023236)	CYP27A1 (ENSOCUG00000003377) #26	PRKAG3 (ENSOCUG00000003384)	WNT6 (ENSOCUG00000024007)	WNT10A (ENSOCUG00000016033)	FEV (ENSOCUG00000021953)	CRYBA2 (ENSOCUG00000000206)	CFAP65 (ENSOCUG00000000208)	IHH (ENSOCUG00000028137)	ENSOCUG00000015083
Pika	MODERN SPECIES	2762						CXCR1 (ENSOPRG00000005754)	ARPC2 (ENSOPRG00000005762)	AAMP (ENSOPRG00000005805)	PNKD (ENSOPRG00000005828)	ENSOPRG00000018377	TMBIM1 (ENSOPRG00000005851)	ENSOPRG00000005879	SLC11A1 (ENSOPRG00000005901)	VIL1 (ENSOPRG00000005918)	USP37 (ENSOPRG00000005934) #21	CNOT9 (ENSOPRG00000005958) #22	PLCD4 (ENSOPRG00000005972) #23	ZNF142 (ENSOPRG00000005998) #24	RNF25 (ENSOPRG00000006026)	STK36 (ENSOPRG00000006039)	TTLL4 (ENSOPRG00000006068)
Rodentia	ANCESTRAL SPECIES	14	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a.e	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00910000148620.e	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Alpin marmot	MODERN SPECIES	8	RUFY4 (ENSMMMG00000018143)	CXCR2 (ENSMMMG00000018174)	CXCR1 (ENSMMMG00000018180)	ARPC2 (ENSMMMG00000018188)	GPBAR1 (ENSMMMG00000018212)	ENSMMMG00000018213	ENSMMMG00000018234	TMBIM1 (ENSMMMG00000018243)	PNKD (ENSMMMG00000018279)	CATIP (ENSMMMG00000018380)	ENSMMMG00000018388	SLC11A1 (ENSMMMG00000018412)	CTDSP1 (ENSMMMG00000019536)	VIL1 (ENSMMMG00000019546)	USP37 (ENSMMMG00000019560) #21	CNOT9 (ENSMMMG00000019612) #22	PLCD4 (ENSMMMG00000019618) #23	ZNF142 (ENSMMMG00000019653) #24	BCS1L (ENSMMMG00000019672) #25	RNF25 (ENSMMMG00000019685)	STK36 (ENSMMMG00000019701)	TTLL4 (ENSMMMG00000019755)	CYP27A1 (ENSMMMG00000019807) #26	PRKAG3 (ENSMMMG00000019814)	WNT6 (ENSMMMG00000019844)	WNT10A (ENSMMMG00000019849)	FEV (ENSMMMG00000019852)	CRYBA2 (ENSMMMG00000019854)	CFAP65 (ENSMMMG00000019864)	IHH (ENSMMMG00000019944)	NHEJ1 (ENSMMMG00000019945)
Marmotini_b	ANCESTRAL SPECIES	71	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a.e	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000154690.nb	ENSGT00910000148620.e	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Arctic ground squirrel	MODERN SPECIES	76	RUFY4 (ENSUPAG00010011649)	CXCR2 (ENSUPAG00010011661)	CXCR1 (ENSUPAG00010011667)	ARPC2 (ENSUPAG00010011674)	GPBAR1 (ENSUPAG00010011703)	AAMP (ENSUPAG00010011707)	PNKD (ENSUPAG00010011726)	TMBIM1 (ENSUPAG00010011766)	CATIP (ENSUPAG00010011812)	ENSUPAG00010011825	ENSUPAG00010011830	SLC11A1 (ENSUPAG00010011835)	CTDSP1 (ENSUPAG00010011867)	VIL1 (ENSUPAG00010012061)	USP37 (ENSUPAG00010012094) #21	CNOT9 (ENSUPAG00010012221) #22	PLCD4 (ENSUPAG00010012230) #23	ENSUPAG00010012261	BCS1L (ENSUPAG00010012288) #25	RNF25 (ENSUPAG00010012304)	STK36 (ENSUPAG00010012312)	TTLL4 (ENSUPAG00010012373)	CYP27A1 (ENSUPAG00010012425) #26	PRKAG3 (ENSUPAG00010012438)	WNT6 (ENSUPAG00010012502)	WNT10A (ENSUPAG00010012507)	CDK5R2 (ENSUPAG00010012510)	FEV (ENSUPAG00010012515)	CRYBA2 (ENSUPAG00010012524)	CFAP65 (ENSUPAG00010012541)	IHH (ENSUPAG00010012634)
Squirrel	MODERN SPECIES	169		ENSSTOG00000029496	TNS1 (ENSSTOG00000007536) #27	RUFY4 (ENSSTOG00000024826)	CXCR2 (ENSSTOG00000013059)	CXCR1 (ENSSTOG00000013063)	ARPC2 (ENSSTOG00000015172)	ENSSTOG00000012960	GPBAR1 (ENSSTOG00000012951)	PNKD (ENSSTOG00000024593)	TMBIM1 (ENSSTOG00000029052)	SLC11A1 (ENSSTOG00000004571)	CTDSP1 (ENSSTOG00000008434)	VIL1 (ENSSTOG00000026327)	USP37 (ENSSTOG00000014934) #21	CNOT9 (ENSSTOG00000014954) #22	PLCD4 (ENSSTOG00000006406) #23	ENSSTOG00000020993	BCS1L (ENSSTOG00000006465) #25	RNF25 (ENSSTOG00000006486)	STK36 (ENSSTOG00000006509)	TTLL4 (ENSSTOG00000006562)	CYP27A1 (ENSSTOG00000006612) #26	PRKAG3 (ENSSTOG00000006628)	WNT6 (ENSSTOG00000006654)	WNT10A (ENSSTOG00000026725)	ENSSTOG00000022853	CDK5R2 (ENSSTOG00000025038)	FEV (ENSSTOG00000020252)	CRYBA2 (ENSSTOG00000009326)	ENSSTOG00000009331
Eurasian red squirrel	MODERN SPECIES	12	TNS1 (ENSSVLG00005009290) #27	RUFY4 (ENSSVLG00005009621)	CXCR2 (ENSSVLG00005010719)	CXCR1 (ENSSVLG00005010741)	ENSSVLG00005010772	ARPC2 (ENSSVLG00005010826)	GPBAR1 (ENSSVLG00005010913)	AAMP (ENSSVLG00005010932)	PNKD (ENSSVLG00005011172)	TMBIM1 (ENSSVLG00005011285)	CATIP (ENSSVLG00005011352)	SLC11A1 (ENSSVLG00005011497)	CTDSP1 (ENSSVLG00005011687)	VIL1 (ENSSVLG00005011808)	USP37 (ENSSVLG00005012174) #21	CNOT9 (ENSSVLG00005012291) #22	PLCD4 (ENSSVLG00005012386) #23	ENSSVLG00005012744	BCS1L (ENSSVLG00005012862) #25	RNF25 (ENSSVLG00005012906)	STK36 (ENSSVLG00005012970)	TTLL4 (ENSSVLG00005013389)	ENSSVLG00005013536	CYP27A1 (ENSSVLG00005013581) #26	PRKAG3 (ENSSVLG00005013746)	WNT6 (ENSSVLG00005013835)	WNT10A (ENSSVLG00005013864)	CDK5R2 (ENSSVLG00005013909)	FEV (ENSSVLG00005013940)	CRYBA2 (ENSSVLG00005014007)	CFAP65 (ENSSVLG00005014142)
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b.eb.a	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916.c	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Naked mole-rat female	MODERN SPECIES	17	RUFY4 (ENSHGLG00000017563)	CXCR2 (ENSHGLG00000043141)	ENSHGLG00000041402	CXCR1 (ENSHGLG00000033529)	ARPC2 (ENSHGLG00000016626)	GPBAR1 (ENSHGLG00000034714)	AAMP (ENSHGLG00000016373)	ENSHGLG00000048879	TMBIM1 (ENSHGLG00000015989)	PNKD (ENSHGLG00000013971)	CATIP (ENSHGLG00000017419)	SLC11A1 (ENSHGLG00000016083)	CTDSP1 (ENSHGLG00000048012)	VIL1 (ENSHGLG00000013203)	USP37 (ENSHGLG00000013897) #21	CNOT9 (ENSHGLG00000016743) #22	PLCD4 (ENSHGLG00000008143) #23	ENSHGLG00000010262	BCS1L (ENSHGLG00000008703) #25	RNF25 (ENSHGLG00000007383)	STK36 (ENSHGLG00000016143)	TTLL4 (ENSHGLG00000015642)	ENSHGLG00000012335	CYP27A1 (ENSHGLG00000013105) #26	ENSHGLG00000042292	PRKAG3 (ENSHGLG00000018906)	WNT6 (ENSHGLG00000008425)	WNT10A (ENSHGLG00000006038)	ENSHGLG00000042473	CDK5R2 (ENSHGLG00000020594)	FEV (ENSHGLG00000049169)
Hystricomorpha_a	ANCESTRAL SPECIES	32	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b.eb.a	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916.c	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Guinea pig	MODERN SPECIES	89															USP37 (ENSCPOG00000015117) #21	CNOT9 (ENSCPOG00000038715) #22	PLCD4 (ENSCPOG00000015123) #23	ENSCPOG00000002539	BCS1L (ENSCPOG00000002544) #25	ENSCPOG00000002546	STK36 (ENSCPOG00000002553)	TTLL4 (ENSCPOG00000002562)	CYP27A1 (ENSCPOG00000001403) #26	PRKAG3 (ENSCPOG00000025222)	WNT6 (ENSCPOG00000031683)	WNT10A (ENSCPOG00000036720)	ENSCPOG00000031234	FEV (ENSCPOG00000021229)	CRYBA2 (ENSCPOG00000009130)	CFAP65 (ENSCPOG00000015251)	IHH (ENSCPOG00000031896)
Hystricomorpha_b	ANCESTRAL SPECIES	28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b.eb.a	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916.c	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Long-tailed chinchilla	MODERN SPECIES	160	TNP1 (ENSCLAG00000009510)	TNS1 (ENSCLAG00000015284) #27	RUFY4 (ENSCLAG00000009144)	CXCR2 (ENSCLAG00000017805)	CXCR1 (ENSCLAG00000018091)	ARPC2 (ENSCLAG00000008305)	GPBAR1 (ENSCLAG00000008408)	AAMP (ENSCLAG00000009759)	TMBIM1 (ENSCLAG00000016172)	PNKD (ENSCLAG00000012048)	CATIP (ENSCLAG00000013420)	SLC11A1 (ENSCLAG00000012795)	CTDSP1 (ENSCLAG00000014330)	VIL1 (ENSCLAG00000008436)	USP37 (ENSCLAG00000007725) #21	CNOT9 (ENSCLAG00000013219) #22	PLCD4 (ENSCLAG00000008034) #23	ENSCLAG00000011769	BCS1L (ENSCLAG00000014008) #25	RNF25 (ENSCLAG00000012866)	STK36 (ENSCLAG00000016247)	ENSCLAG00000007759	CYP27A1 (ENSCLAG00000008414) #26	PRKAG3 (ENSCLAG00000009025)	WNT6 (ENSCLAG00000008099)	WNT10A (ENSCLAG00000009082)	CDK5R2 (ENSCLAG00000008214)	FEV (ENSCLAG00000007374)	CRYBA2 (ENSCLAG00000007468)	CFAP65 (ENSCLAG00000008296)	IHH (ENSCLAG00000008837)
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	137									PNKD (ENSODEG00000009734)	SLC11A1 (ENSODEG00000006626)	CTDSP1 (ENSODEG00000006942)	VIL1 (ENSODEG00000009742)	ENSODEG00000009384	ENSODEG00000006228	USP37 (ENSODEG00000006571) #21	ENSODEG00000007185 #22	PLCD4 (ENSODEG00000009216) #23	ENSODEG00000006310	ENSODEG00000008977 #25	ENSODEG00000008204	ENSODEG00000006989	ENSODEG00000010583	ENSODEG00000010088	TTLL4 (ENSODEG00000008937)	CYP27A1 (ENSODEG00000006917) #26	PRKAG3 (ENSODEG00000007789)	WNT6 (ENSODEG00000006363)	WNT10A (ENSODEG00000005957)	CDK5R2 (ENSODEG00000019819)	FEV (ENSODEG00000008014)	CRYBA2 (ENSODEG00000007929)
Degu	MODERN SPECIES	205	AP2B1 (ENSODEG00000013913)	RASL10B (ENSODEG00000012407)	ENSODEG00000012204	C17orf50 (ENSODEG00000012668)	MMP28 (ENSODEG00000016303)	ENSODEG00000012915	HEATR9 (ENSODEG00000012621)	ENSODEG00000012792	ENSODEG00000013298	ENSODEG00000013395	ENSODEG00000013198	ENSODEG00000013480	ENSODEG00000013109	HEATR6 (ENSODEG00000013428)	HNF1B (ENSODEG00000012709)	ENSODEG00000012382 #22	ENSODEG00000012814	SYNRG (ENSODEG00000013858)	DUSP14 (ENSODEG00000020057)	TADA2A (ENSODEG00000014579)	ACACA (ENSODEG00000014030)	ENSODEG00000013269	AATF (ENSODEG00000013074)	LHX1 (ENSODEG00000012895)	ENSODEG00000013680	ENSODEG00000012953	ENSODEG00000013042	ENSODEG00000012529	GGNBP2 (ENSODEG00000012950)	MYO19 (ENSODEG00000013791)	ENSODEG00000012868
Degu	MODERN SPECIES	423	RPS9 (ENSODEG00000002087)	TSEN34 (ENSODEG00000000096)	ENSODEG00000000271	ENSODEG00000000285	TMC4 (ENSODEG00000000332)	LENG1 (ENSODEG00000000538)	CNOT3 (ENSODEG00000000705)	PRPF31 (ENSODEG00000000855)	TFPT (ENSODEG00000000661)	ENSODEG00000000708	CACNG6 (ENSODEG00000000726)	CACNG8 (ENSODEG00000001018)	CACNG7 (ENSODEG00000001102)	PRKCG (ENSODEG00000001182)	MYADM (ENSODEG00000018562)	ENSODEG00000000298 #22
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00930000151420	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142
Kangaroo rat	MODERN SPECIES	320	ENSDORG00000000281	Tns1 (ENSDORG00000013017) #27	Rufy4 (ENSDORG00000007142)	Cxcr2 (ENSDORG00000029478)	Cxcr1 (ENSDORG00000015675)	ENSDORG00000026172	ENSDORG00000016107	Gpbar1 (ENSDORG00000023497)	Aamp (ENSDORG00000016108)	Pnkd (ENSDORG00000016109)	Tmbim1 (ENSDORG00000016111)	Slc11a1 (ENSDORG00000010936)	Ctdsp1 (ENSDORG00000028537)	Vil1 (ENSDORG00000014838)	Usp37 (ENSDORG00000014842) #21	Cnot9 (ENSDORG00000029243) #22	Plcd4 (ENSDORG00000004704) #23	ENSDORG00000004707	Bcs1l (ENSDORG00000004709) #25	ENSDORG00000004710	ENSDORG00000023301	ENSDORG00000028722	Ttll4 (ENSDORG00000008314)	Cyp27a1 (ENSDORG00000014138) #26	Prkag3 (ENSDORG00000025509)	Wnt6 (ENSDORG00000005721)	Wnt10a (ENSDORG00000005722)	ENSDORG00000024930	Cryba2 (ENSDORG00000002775)	Cfap65 (ENSDORG00000002777)	Ihh (ENSDORG00000008874)
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00930000151420	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	95	Cab39 (ENSJJAG00000006104)	Marchf4 (ENSJJAG00000024161)	Smarcal1 (ENSJJAG00000016407)	Igfbp2 (ENSJJAG00000022294) #29	Igfbp5 (ENSJJAG00000017561) #28	Tnp1 (ENSJJAG00000015724)	Tns1 (ENSJJAG00000016129) #27	Cxcr2 (ENSJJAG00000002215)	ENSJJAG00000018352	Gpbar1 (ENSJJAG00000000711)	Pnkd (ENSJJAG00000023559)	ENSJJAG00000000751	Slc11a1 (ENSJJAG00000018654)	Vil1 (ENSJJAG00000017015)	Usp37 (ENSJJAG00000012891) #21	ENSJJAG00000001130 #22	Plcd4 (ENSJJAG00000015778) #23	Zfp142 (ENSJJAG00000021558) #24	Bcs1l (ENSJJAG00000015901) #25	ENSJJAG00000015098	ENSJJAG00000011828	ENSJJAG00000022770	Ttll4 (ENSJJAG00000022044)	Cyp27a1 (ENSJJAG00000016498) #26	Wnt6 (ENSJJAG00000020656)	Wnt10a (ENSJJAG00000019142)	ENSJJAG00000018657	Fev (ENSJJAG00000014165)	Cryba2 (ENSJJAG00000012188)	Cfap65 (ENSJJAG00000021817)	Ihh (ENSJJAG00000005159)
Lesser Egyptian jerboa	MODERN SPECIES	105																ENSJJAG00000012359 #22	ENSJJAG00000014662	ENSJJAG00000016098	ENSJJAG00000000769	ENSJJAG00000018462	ENSJJAG00000014048	Il1rapl1 (ENSJJAG00000016285)	ENSJJAG00000020571	Nr0b1 (ENSJJAG00000022330)	ENSJJAG00000014702	Tasl (ENSJJAG00000014753)	ENSJJAG00000015331	Tab3 (ENSJJAG00000019643)	ENSJJAG00000022358	ENSJJAG00000005358	ENSJJAG00000022822
Muroidea	ANCESTRAL SPECIES	20	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00930000151420	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142
Upper Galilee mountains blind mole rat	MODERN SPECIES	1887	Igfbp5 (ENSNGAG00000015689) #28	ENSNGAG00000020111	ENSNGAG00000017373	Tns1 (ENSNGAG00000023512) #27	Rufy4 (ENSNGAG00000009822)	Arpc2 (ENSNGAG00000018188)	Gpbar1 (ENSNGAG00000020381)	Aamp (ENSNGAG00000022771)	Pnkd (ENSNGAG00000014980)	ENSNGAG00000013421	Catip (ENSNGAG00000022604)	Slc11a1 (ENSNGAG00000022820)	Ctdsp1 (ENSNGAG00000008784)	Vil1 (ENSNGAG00000007441)	Usp37 (ENSNGAG00000021253) #21	Cnot9 (ENSNGAG00000013140) #22	Plcd4 (ENSNGAG00000023913) #23	ENSNGAG00000023768	Bcs1l (ENSNGAG00000019095) #25	ENSNGAG00000023854	ENSNGAG00000016725	ENSNGAG00000013118	Ttll4 (ENSNGAG00000020292)	Cyp27a1 (ENSNGAG00000023395) #26	Prkag3 (ENSNGAG00000007920)	Wnt6 (ENSNGAG00000021793)	Wnt10a (ENSNGAG00000024234)	Cdk5r2 (ENSNGAG00000001353)	Fev (ENSNGAG00000022934)	Cryba2 (ENSNGAG00000006988)	ENSNGAG00000001188
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00930000151420	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142
Murinae	ANCESTRAL SPECIES	9	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Mus	ANCESTRAL SPECIES	5	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Steppe mouse	MODERN SPECIES	3423	ENSMSIG00000020791	Tns1 (ENSMSIG00000020037) #27	Rufy4 (ENSMSIG00000020004)	Cxcr2 (ENSMSIG00000020001)	Cxcr1 (ENSMSIG00000019993)	Arpc2 (ENSMSIG00000019942)	Gpbar1 (ENSMSIG00000019937)	Aamp (ENSMSIG00000019900)	ENSMSIG00000019883	ENSMSIG00000019882	Pnkd (ENSMSIG00000019825)	Catip (ENSMSIG00000019768)	Slc11a1 (ENSMSIG00000019682)	ENSMSIG00000019634	Vil1 (ENSMSIG00000019586)	Cnot9 (ENSMSIG00000019555) #22	Usp37 (ENSMSIG00000019436) #21	Plcd4 (ENSMSIG00000019245) #23	Zfp142 (ENSMSIG00000019187) #24	Bcs1l (ENSMSIG00000019168) #25	Rnf25 (ENSMSIG00000019133)	Stk36 (ENSMSIG00000018889)	Ttll4 (ENSMSIG00000018759)	Prkag3 (ENSMSIG00000018678)	Cyp27a1 (ENSMSIG00000018644) #26	Wnt6 (ENSMSIG00000018613)	Wnt10a (ENSMSIG00000018596)	Cdk5r2 (ENSMSIG00000018589)	Fev (ENSMSIG00000018578)	Cryba2 (ENSMSIG00000018560)	Cfap65 (ENSMSIG00000018515)
spretus	MODERN SPECIES		Tnp1 (MGP_SPRETEiJ_G0015056)	Tns1 (MGP_SPRETEiJ_G0015057) #27	Rufy4 (MGP_SPRETEiJ_G0015058)	Cxcr2 (MGP_SPRETEiJ_G0015059)	MGP_SPRETEiJ_G0015060	Arpc2 (MGP_SPRETEiJ_G0015061)	Gpbar1 (MGP_SPRETEiJ_G0015062)	Aamp (MGP_SPRETEiJ_G0015063)	Pnkd (MGP_SPRETEiJ_G0015064)	Tmbim1 (MGP_SPRETEiJ_G0015065)	Catip (MGP_SPRETEiJ_G0015066)	Slc11a1 (MGP_SPRETEiJ_G0015067)	Ctdsp1 (MGP_SPRETEiJ_G0015068)	Vil1 (MGP_SPRETEiJ_G0015069)	Usp37 (MGP_SPRETEiJ_G0015070) #21	Cnot9 (MGP_SPRETEiJ_G0015071) #22	Plcd4 (MGP_SPRETEiJ_G0015072) #23	Zfp142 (MGP_SPRETEiJ_G0015073) #24	Bcs1l (MGP_SPRETEiJ_G0015074) #25	Rnf25 (MGP_SPRETEiJ_G0015075)	Stk36 (MGP_SPRETEiJ_G0015076)	Ttll4 (MGP_SPRETEiJ_G0015077)	Cyp27a1 (MGP_SPRETEiJ_G0015078) #26	Prkag3 (MGP_SPRETEiJ_G0015079)	Wnt6 (MGP_SPRETEiJ_G0015080)	Wnt10a (MGP_SPRETEiJ_G0015081)	Cdk5r2 (MGP_SPRETEiJ_G0015082)	Fev (MGP_SPRETEiJ_G0015083)	Cryba2 (MGP_SPRETEiJ_G0015084)	Cfap65 (MGP_SPRETEiJ_G0015085)	Ihh (MGP_SPRETEiJ_G0015086)
Mouse	MODERN SPECIES		Tnp1 (ENSMUSG00000026182)	Tns1 (ENSMUSG00000055322) #27	Rufy4 (ENSMUSG00000061815)	Cxcr2 (ENSMUSG00000026180)	Cxcr1 (ENSMUSG00000048480)	Arpc2 (ENSMUSG00000006304)	Gpbar1 (ENSMUSG00000064272)	Aamp (ENSMUSG00000006299)	Pnkd (ENSMUSG00000026179)	Tmbim1 (ENSMUSG00000006301)	Catip (ENSMUSG00000073650)	Slc11a1 (ENSMUSG00000026177)	Ctdsp1 (ENSMUSG00000026176)	Vil1 (ENSMUSG00000026175)	Usp37 (ENSMUSG00000033364) #21	Cnot9 (ENSMUSG00000026174) #22	Plcd4 (ENSMUSG00000026173) #23	Zfp142 (ENSMUSG00000026135) #24	Bcs1l (ENSMUSG00000026172) #25	Rnf25 (ENSMUSG00000026171)	Stk36 (ENSMUSG00000033276)	Ttll4 (ENSMUSG00000033257)	Cyp27a1 (ENSMUSG00000026170) #26	Prkag3 (ENSMUSG00000006542)	Wnt6 (ENSMUSG00000033227)	Wnt10a (ENSMUSG00000026167)	Cdk5r2 (ENSMUSG00000090071)	Fev (ENSMUSG00000055197)	Cryba2 (ENSMUSG00000006546)	Cfap65 (ENSMUSG00000047021)	Ihh (ENSMUSG00000006538)
Ryukyu mouse	MODERN SPECIES		Tnp1 (MGP_CAROLIEiJ_G0014250)	Tns1 (MGP_CAROLIEiJ_G0014251) #27	Rufy4 (MGP_CAROLIEiJ_G0014252)	Cxcr2 (MGP_CAROLIEiJ_G0014253)	Cxcr1 (MGP_CAROLIEiJ_G0014254)	Arpc2 (MGP_CAROLIEiJ_G0014255)	Gpbar1 (MGP_CAROLIEiJ_G0014256)	Aamp (MGP_CAROLIEiJ_G0014257)	Pnkd (MGP_CAROLIEiJ_G0014258)	Tmbim1 (MGP_CAROLIEiJ_G0014259)	Catip (MGP_CAROLIEiJ_G0014260)	Slc11a1 (MGP_CAROLIEiJ_G0014261)	Ctdsp1 (MGP_CAROLIEiJ_G0014262)	Vil1 (MGP_CAROLIEiJ_G0014263)	Usp37 (MGP_CAROLIEiJ_G0014264) #21	Cnot9 (MGP_CAROLIEiJ_G0014265) #22	Plcd4 (MGP_CAROLIEiJ_G0014266) #23	Zfp142 (MGP_CAROLIEiJ_G0014267) #24	Bcs1l (MGP_CAROLIEiJ_G0014268) #25	Rnf25 (MGP_CAROLIEiJ_G0014269)	Stk36 (MGP_CAROLIEiJ_G0014270)	Ttll4 (MGP_CAROLIEiJ_G0014271)	Cyp27a1 (MGP_CAROLIEiJ_G0014272) #26	Prkag3 (MGP_CAROLIEiJ_G0014273)	Wnt6 (MGP_CAROLIEiJ_G0014274)	Wnt10a (MGP_CAROLIEiJ_G0014275)	Cdk5r2 (MGP_CAROLIEiJ_G0014276)	Fev (MGP_CAROLIEiJ_G0014277)	Cryba2 (MGP_CAROLIEiJ_G0014278)	Cfap65 (MGP_CAROLIEiJ_G0014279)	Ihh (MGP_CAROLIEiJ_G0014280)
Shrew mouse	MODERN SPECIES	18	Tnp1 (MGP_PahariEiJ_G0027488)	Tns1 (MGP_PahariEiJ_G0027489) #27	Rufy4 (MGP_PahariEiJ_G0027490)	Cxcr2 (MGP_PahariEiJ_G0027491)	Cxcr1 (MGP_PahariEiJ_G0027492)	Arpc2 (MGP_PahariEiJ_G0027493)	Gpbar1 (MGP_PahariEiJ_G0027494)	Aamp (MGP_PahariEiJ_G0027495)	Pnkd (MGP_PahariEiJ_G0027496)	Tmbim1 (MGP_PahariEiJ_G0027497)	MGP_PahariEiJ_G0027498	Slc11a1 (MGP_PahariEiJ_G0027499)	Ctdsp1 (MGP_PahariEiJ_G0027500)	Vil1 (MGP_PahariEiJ_G0027501)	Usp37 (MGP_PahariEiJ_G0027502) #21	Cnot9 (MGP_PahariEiJ_G0027503) #22	Plcd4 (MGP_PahariEiJ_G0027504) #23	Zfp142 (MGP_PahariEiJ_G0027505) #24	Bcs1l (MGP_PahariEiJ_G0027506) #25	Rnf25 (MGP_PahariEiJ_G0027507)	Stk36 (MGP_PahariEiJ_G0027508)	Ttll4 (MGP_PahariEiJ_G0027509)	Cyp27a1 (MGP_PahariEiJ_G0027510) #26	Prkag3 (MGP_PahariEiJ_G0027511)	Wnt6 (MGP_PahariEiJ_G0027512)	Wnt10a (MGP_PahariEiJ_G0027513)	Cdk5r2 (MGP_PahariEiJ_G0027514)	Fev (MGP_PahariEiJ_G0027515)	Cryba2 (MGP_PahariEiJ_G0027516)	Cfap65 (MGP_PahariEiJ_G0027517)	Ihh (MGP_PahariEiJ_G0027518)
Rat	MODERN SPECIES	19	Tns1 (ENSRNOG00000014182) #27	Rufy4 (ENSRNOG00000032991)	Cxcr2 (ENSRNOG00000063618)	Cxcr1 (ENSRNOG00000048239)	Arpc2 (ENSRNOG00000014289)	Gpbar1 (ENSRNOG00000058260)	Aamp (ENSRNOG00000014399)	Pnkd (ENSRNOG00000014806)	ENSRNOG00000062745	Tmbim1 (ENSRNOG00000014797)	Catip (ENSRNOG00000037835)	Slc11a1 (ENSRNOG00000014956)	Ctdsp1 (ENSRNOG00000015295)	Vil1 (ENSRNOG00000015408)	Usp37 (ENSRNOG00000022720) #21	Cnot9 (ENSRNOG00000016034) #22	Plcd4 (ENSRNOG00000016361) #23	Zfp142 (ENSRNOG00000022414) #24	Bcs1l (ENSRNOG00000016754) #25	Rnf25 (ENSRNOG00000016886)	Stk36 (ENSRNOG00000016913)	Ttll4 (ENSRNOG00000017129)	Cyp27a1 (ENSRNOG00000017188) #26	Prkag3 (ENSRNOG00000017248)	ENSRNOG00000067128	Wnt6 (ENSRNOG00000017409)	Wnt10a (ENSRNOG00000052510)	AC132020.1 (ENSRNOG00000017757)	Cdk5r2 (ENSRNOG00000037793)	Fev (ENSRNOG00000017856)	Cryba2 (ENSRNOG00000017996)
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00930000151420	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00930000151420	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142
Golden Hamster	MODERN SPECIES	640	Igfbp2 (ENSMAUG00000016997) #29	Igfbp5 (ENSMAUG00000001698) #28	Tnp1 (ENSMAUG00000021536)	Tns1 (ENSMAUG00000019800) #27	ENSMAUG00000006666	Rufy4 (ENSMAUG00000011433)	Cxcr2 (ENSMAUG00000003254)	Arpc2 (ENSMAUG00000001445)	ENSMAUG00000022137	Pnkd (ENSMAUG00000013099)	ENSMAUG00000008213	Slc11a1 (ENSMAUG00000011528)	Ctdsp1 (ENSMAUG00000004766)	Vil1 (ENSMAUG00000001066)	Usp37 (ENSMAUG00000020807) #21	Cnot9 (ENSMAUG00000000762) #22	Plcd4 (ENSMAUG00000001125) #23	ENSMAUG00000016846	Bcs1l (ENSMAUG00000016355) #25	ENSMAUG00000019636	ENSMAUG00000009866	ENSMAUG00000018220	Ttll4 (ENSMAUG00000013354)	Cyp27a1 (ENSMAUG00000012139) #26	Prkag3 (ENSMAUG00000009130)	Wnt6 (ENSMAUG00000001585)	Wnt10a (ENSMAUG00000002340)	Cdk5r2 (ENSMAUG00000008653)	Fev (ENSMAUG00000007309)	Cryba2 (ENSMAUG00000009795)	Cfap65 (ENSMAUG00000014580)
Chinese hamster chok1gshd	MODERN SPECIES	1	Tnp1 (ENSCGRG00001024576)	Tns1 (ENSCGRG00001019432) #27	Rufy4 (ENSCGRG00001019715)	Cxcr2 (ENSCGRG00001009605)	Cxcr1 (ENSCGRG00001019693)	Arpc2 (ENSCGRG00001020392)	Aamp (ENSCGRG00001019925)	Gpbar1 (ENSCGRG00001009681)	Pnkd (ENSCGRG00001024071)	Tmbim1 (ENSCGRG00001020249)	Catip (ENSCGRG00001021095)	Slc11a1 (ENSCGRG00001020070)	Ctdsp1 (ENSCGRG00001020131)	Vil1 (ENSCGRG00001022375)	Usp37 (ENSCGRG00001020814) #21	Cnot9 (ENSCGRG00001006914) #22	Plcd4 (ENSCGRG00001019995) #23	ENSCGRG00001020944	Bcs1l (ENSCGRG00001022549) #25	Rnf25 (ENSCGRG00001019945)	Stk36 (ENSCGRG00001021047)	Ttll4 (ENSCGRG00001020353)	Cyp27a1 (ENSCGRG00001022449) #26	Prkag3 (ENSCGRG00001023244)	Wnt6 (ENSCGRG00001020412)	Wnt10a (ENSCGRG00001021957)	Cdk5r2 (ENSCGRG00001010890)	Fev (ENSCGRG00001022388)	Cryba2 (ENSCGRG00001020857)	Cfap65 (ENSCGRG00001021271)	Ihh (ENSCGRG00001004911)
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT01050000244890.a.b.a.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00930000151420	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142
Prairie vole	MODERN SPECIES	354	Tnp1 (ENSMOCG00000017865)	Tns1 (ENSMOCG00000017753) #27	Rufy4 (ENSMOCG00000018952)	Cxcr2 (ENSMOCG00000005561)	Cxcr1 (ENSMOCG00000006635)	Arpc2 (ENSMOCG00000004660)	Gpbar1 (ENSMOCG00000006359)	Aamp (ENSMOCG00000014930)	Tmbim1 (ENSMOCG00000014595)	Pnkd (ENSMOCG00000007956)	Catip (ENSMOCG00000001530)	Slc11a1 (ENSMOCG00000022009)	Ctdsp1 (ENSMOCG00000018253)	Vil1 (ENSMOCG00000018545)	Usp37 (ENSMOCG00000002015) #21	Cnot9 (ENSMOCG00000014736) #22	Plcd4 (ENSMOCG00000007617) #23	ENSMOCG00000009252	Bcs1l (ENSMOCG00000021587) #25	ENSMOCG00000020374	ENSMOCG00000021552	ENSMOCG00000014792	Ttll4 (ENSMOCG00000022947)	Cyp27a1 (ENSMOCG00000022721) #26	Prkag3 (ENSMOCG00000002259)	Wnt6 (ENSMOCG00000017824)	Wnt10a (ENSMOCG00000019338)	Cdk5r2 (ENSMOCG00000001322)	Fev (ENSMOCG00000007062)	Cryba2 (ENSMOCG00000002053)	Cfap65 (ENSMOCG00000019421)
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	4	Rufy4 (ENSPEMG00000022881)	Cxcr2 (ENSPEMG00000029924)	ENSPEMG00000014345	ENSPEMG00000024826	Cxcr1 (ENSPEMG00000014090)	Arpc2 (ENSPEMG00000013064)	Gpbar1 (ENSPEMG00000007092)	Aamp (ENSPEMG00000013785)	Tmbim1 (ENSPEMG00000009661)	Pnkd (ENSPEMG00000010689)	ENSPEMG00000031268	Slc11a1 (ENSPEMG00000000568)	Ctdsp1 (ENSPEMG00000025369)	Vil1 (ENSPEMG00000012484)	Usp37 (ENSPEMG00000002989) #21	Cnot9 (ENSPEMG00000014045) #22	Plcd4 (ENSPEMG00000016923) #23	Zfp142 (ENSPEMG00000000784) #24	Bcs1l (ENSPEMG00000009977) #25	Rnf25 (ENSPEMG00000013432)	Stk36 (ENSPEMG00000025017)	Ttll4 (ENSPEMG00000015183)	Cyp27a1 (ENSPEMG00000016775) #26	Prkag3 (ENSPEMG00000015508)	Wnt6 (ENSPEMG00000013371)	Wnt10a (ENSPEMG00000026915)	ENSPEMG00000026703	Fev (ENSPEMG00000030849)	Cryba2 (ENSPEMG00000012049)	Cfap65 (ENSPEMG00000000225)	Ihh (ENSPEMG00000029231)
Northern American deer mouse	MODERN SPECIES	18	ENSPEMG00000013058	Mllt10 (ENSPEMG00000006812)	Skida1 (ENSPEMG00000002718)	Nebl (ENSPEMG00000022900)	Plxdc2 (ENSPEMG00000016755)	Malrd1 (ENSPEMG00000012195)	Arl5b (ENSPEMG00000012290)	Nsun6 (ENSPEMG00000023389)	Cacnb2 (ENSPEMG00000014893)	Slc39a12 (ENSPEMG00000012373)	Mrc1 (ENSPEMG00000024175)	Tmem236 (ENSPEMG00000013838)	Stam (ENSPEMG00000014815)	Hacd1 (ENSPEMG00000024206)	St8sia6 (ENSPEMG00000029895)	ENSPEMG00000000946 #22	Vim (ENSPEMG00000012261)	Trdmt1 (ENSPEMG00000018297)	Cubn (ENSPEMG00000012926)	Rsu1 (ENSPEMG00000015677)	C1ql3 (ENSPEMG00000024317)	Pter (ENSPEMG00000008590)	Mindy3 (ENSPEMG00000012561)	Itga8 (ENSPEMG00000015642)	Fam171a1 (ENSPEMG00000011973) ##37	Nmt2 (ENSPEMG00000014922)	Rpp38 (ENSPEMG00000008375)	Acbd7 (ENSPEMG00000015811)	Olah (ENSPEMG00000015490)	ENSPEMG00000026010	Meig1 (ENSPEMG00000027268)
Primates	ANCESTRAL SPECIES	13	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00950000185166	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00910000147456	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00910000147456	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00910000147849	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Hominidae	ANCESTRAL SPECIES	17	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00910000147849	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00910000147849	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00560000078504	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Pan	ANCESTRAL SPECIES	12	ENSGT00560000078504	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Bonobo	MODERN SPECIES	15	TNP1 (ENSPPAG00000026261)	TNS1 (ENSPPAG00000040585) #27	RUFY4 (ENSPPAG00000028954)	CXCR2 (ENSPPAG00000017264)	CXCR1 (ENSPPAG00000020733)	ARPC2 (ENSPPAG00000036270)	GPBAR1 (ENSPPAG00000009032)	AAMP (ENSPPAG00000028643)	PNKD (ENSPPAG00000034969)	TMBIM1 (ENSPPAG00000033659)	CATIP (ENSPPAG00000031409)	SLC11A1 (ENSPPAG00000035104)	CTDSP1 (ENSPPAG00000043173)	VIL1 (ENSPPAG00000005529)	USP37 (ENSPPAG00000029374) #21	CNOT9 (ENSPPAG00000037194) #22	PLCD4 (ENSPPAG00000039759) #23	ZNF142 (ENSPPAG00000032732) #24	BCS1L (ENSPPAG00000029284) #25	RNF25 (ENSPPAG00000027047)	STK36 (ENSPPAG00000029478)	TTLL4 (ENSPPAG00000027434)	CYP27A1 (ENSPPAG00000042128) #26	PRKAG3 (ENSPPAG00000028591)	WNT6 (ENSPPAG00000010119)	WNT10A (ENSPPAG00000041398)	ENSPPAG00000018034	CRYBA2 (ENSPPAG00000018250)	CFAP65 (ENSPPAG00000020522)	IHH (ENSPPAG00000034087)	NHEJ1 (ENSPPAG00000042844)
Chimpanzee	MODERN SPECIES	15	ENSPTRG00000041548	TNS1 (ENSPTRG00000012906) #27	RUFY4 (ENSPTRG00000012908)	CXCR2 (ENSPTRG00000050817)	CXCR1 (ENSPTRG00000012909)	ARPC2 (ENSPTRG00000012911)	GPBAR1 (ENSPTRG00000038735)	AAMP (ENSPTRG00000012913)	PNKD (ENSPTRG00000012914)	TMBIM1 (ENSPTRG00000012915)	CATIP (ENSPTRG00000012916)	SLC11A1 (ENSPTRG00000012917)	CTDSP1 (ENSPTRG00000012918)	VIL1 (ENSPTRG00000012919)	USP37 (ENSPTRG00000012920) #21	CNOT9 (ENSPTRG00000012921) #22	PLCD4 (ENSPTRG00000012922) #23	ZNF142 (ENSPTRG00000012923) #24	BCS1L (ENSPTRG00000012924) #25	RNF25 (ENSPTRG00000012925)	STK36 (ENSPTRG00000012926)	TTLL4 (ENSPTRG00000012927)	CYP27A1 (ENSPTRG00000012928) #26	PRKAG3 (ENSPTRG00000012929)	WNT6 (ENSPTRG00000045565)	WNT10A (ENSPTRG00000012931)	CDK5R2 (ENSPTRG00000042910)	FEV (ENSPTRG00000045039)	CRYBA2 (ENSPTRG00000012934)	CFAP65 (ENSPTRG00000012937)	IHH (ENSPTRG00000012938)
Human	MODERN SPECIES	11	TNP1 (ENSG00000118245)	TNS1 (ENSG00000079308) #27	RUFY4 (ENSG00000188282)	CXCR2 (ENSG00000180871)	CXCR1 (ENSG00000163464)	ARPC2 (ENSG00000163466)	GPBAR1 (ENSG00000179921)	AAMP (ENSG00000127837)	PNKD (ENSG00000127838)	TMBIM1 (ENSG00000135926)	CATIP (ENSG00000158428)	SLC11A1 (ENSG00000018280)	CTDSP1 (ENSG00000144579)	VIL1 (ENSG00000127831)	USP37 (ENSG00000135913) #21	CNOT9 (ENSG00000144580) #22	PLCD4 (ENSG00000115556) #23	ZNF142 (ENSG00000115568) #24	BCS1L (ENSG00000074582) #25	RNF25 (ENSG00000163481)	STK36 (ENSG00000163482)	TTLL4 (ENSG00000135912)	CYP27A1 (ENSG00000135929) #26	PRKAG3 (ENSG00000115592)	WNT6 (ENSG00000115596)	WNT10A (ENSG00000135925)	CDK5R2 (ENSG00000171450)	FEV (ENSG00000163497)	CRYBA2 (ENSG00000163499)	CFAP65 (ENSG00000181378)	IHH (ENSG00000163501)
Gorilla	MODERN SPECIES	15	ENSGGOG00000036133	RUFY4 (ENSGGOG00000000003)	ENSGGOG00000009100	CXCR1 (ENSGGOG00000039965)	ARPC2 (ENSGGOG00000008425)	GPBAR1 (ENSGGOG00000026208)	AAMP (ENSGGOG00000006883)	PNKD (ENSGGOG00000006892)	TMBIM1 (ENSGGOG00000006905)	CATIP (ENSGGOG00000007105)	SLC11A1 (ENSGGOG00000013353)	CTDSP1 (ENSGGOG00000013361)	ENSGGOG00000041563	VIL1 (ENSGGOG00000014322)	USP37 (ENSGGOG00000014335) #21	CNOT9 (ENSGGOG00000011091) #22	PLCD4 (ENSGGOG00000011858) #23	ENSGGOG00000024718	BCS1L (ENSGGOG00000001899) #25	RNF25 (ENSGGOG00000001901)	ENSGGOG00000043717	ENSGGOG00000001905	TTLL4 (ENSGGOG00000001914)	CYP27A1 (ENSGGOG00000003243) #26	PRKAG3 (ENSGGOG00000003249)	WNT6 (ENSGGOG00000003259)	WNT10A (ENSGGOG00000000870)	ENSGGOG00000007771	FEV (ENSGGOG00000010787)	CRYBA2 (ENSGGOG00000010794)	CFAP65 (ENSGGOG00000010798)
Orangutan	MODERN SPECIES	15	ENSPPYG00000033641	TNS1 (ENSPPYG00000013159) #27	RUFY4 (ENSPPYG00000013161)	CXCR2 (ENSPPYG00000013162)	CXCR1 (ENSPPYG00000013163)	ARPC2 (ENSPPYG00000013164)	GPBAR1 (ENSPPYG00000013165)	AAMP (ENSPPYG00000013166)	PNKD (ENSPPYG00000013167)	TMBIM1 (ENSPPYG00000013168)	ENSPPYG00000013171	SLC11A1 (ENSPPYG00000013172)	CTDSP1 (ENSPPYG00000036372)	VIL1 (ENSPPYG00000013174)	USP37 (ENSPPYG00000013175) #21	CNOT9 (ENSPPYG00000036751) #22	PLCD4 (ENSPPYG00000013177) #23	ZNF142 (ENSPPYG00000013178) #24	BCS1L (ENSPPYG00000013179) #25	RNF25 (ENSPPYG00000013180)	STK36 (ENSPPYG00000013181)	TTLL4 (ENSPPYG00000013182)	CYP27A1 (ENSPPYG00000013385) #26	PRKAG3 (ENSPPYG00000013184)	WNT6 (ENSPPYG00000013185)	WNT10A (ENSPPYG00000032996)	CDK5R2 (ENSPPYG00000013188)	FEV (ENSPPYG00000013189)	CRYBA2 (ENSPPYG00000013190)	CFAP65 (ENSPPYG00000013191)	IHH (ENSPPYG00000033632)
Gibbon	MODERN SPECIES	14	ENSNLEG00000030847	TNS1 (ENSNLEG00000007284) #27	ENSNLEG00000007290	ENSNLEG00000007291	ENSNLEG00000033617	ARPC2 (ENSNLEG00000033566)	AAMP (ENSNLEG00000008459)	PNKD (ENSNLEG00000034400)	ENSNLEG00000008536	CATIP (ENSNLEG00000008566)	SLC11A1 (ENSNLEG00000008589)	ENSNLEG00000008612	ENSNLEG00000035866	VIL1 (ENSNLEG00000008619)	USP37 (ENSNLEG00000008655) #21	CNOT9 (ENSNLEG00000008737) #22	PLCD4 (ENSNLEG00000008756) #23	ZNF142 (ENSNLEG00000008760) #24	BCS1L (ENSNLEG00000030685) #25	RNF25 (ENSNLEG00000008812)	STK36 (ENSNLEG00000008852)	TTLL4 (ENSNLEG00000008904)	CYP27A1 (ENSNLEG00000008910) #26	PRKAG3 (ENSNLEG00000008942)	WNT6 (ENSNLEG00000008977)	WNT10A (ENSNLEG00000008992)	CDK5R2 (ENSNLEG00000018723)	FEV (ENSNLEG00000009001)	CRYBA2 (ENSNLEG00000009012)	CFAP65 (ENSNLEG00000009025)	IHH (ENSNLEG00000009054)
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00910000147456	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES	84				ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225.k #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Golden snub-nosed monkey	MODERN SPECIES	872					TNS1 (ENSRROG00000028803) #27	RUFY4 (ENSRROG00000016152)	ARPC2 (ENSRROG00000029082)	GPBAR1 (ENSRROG00000018655)	AAMP (ENSRROG00000033093)	PNKD (ENSRROG00000045542)	CATIP (ENSRROG00000043693)	SLC11A1 (ENSRROG00000040779)	CTDSP1 (ENSRROG00000029617)	VIL1 (ENSRROG00000041887)	USP37 (ENSRROG00000043661) #21	ENSRROG00000044345 #22	PLCD4 (ENSRROG00000040960) #23	ZNF142 (ENSRROG00000044151) #24	BCS1L (ENSRROG00000042953) #25	RNF25 (ENSRROG00000041905)	STK36 (ENSRROG00000036005)	TTLL4 (ENSRROG00000036492)	CYP27A1 (ENSRROG00000037168) #26	ENSRROG00000031614	PRKAG3 (ENSRROG00000031522)	WNT6 (ENSRROG00000015395)	WNT10A (ENSRROG00000031543)	FEV (ENSRROG00000024839)	CRYBA2 (ENSRROG00000042620)	CFAP65 (ENSRROG00000031405)	IHH (ENSRROG00000043496)
Black snub-nosed monkey	MODERN SPECIES	1865	NCF4 (ENSRBIG00000043739)	PVALB (ENSRBIG00000042223)	IFT27 (ENSRBIG00000032183)	CACNG2 (ENSRBIG00000038591)	EIF3D (ENSRBIG00000041563)	FOXRED2 (ENSRBIG00000016610)	TXN2 (ENSRBIG00000035538)	MYH9 (ENSRBIG00000042523)	ENSRBIG00000032303	APOL2 (ENSRBIG00000030453)	CATIP (ENSRBIG00000038110)	SLC11A1 (ENSRBIG00000027755)	CTDSP1 (ENSRBIG00000042754)	VIL1 (ENSRBIG00000044160)	USP37 (ENSRBIG00000031381) #21	CNOT9 (ENSRBIG00000042739) #22	PLCD4 (ENSRBIG00000028935) #23	ZNF142 (ENSRBIG00000029685) #24	BCS1L (ENSRBIG00000004869) #25	RNF25 (ENSRBIG00000031654)	STK36 (ENSRBIG00000031646)	TTLL4 (ENSRBIG00000032517)	ENSRBIG00000036284	CYP27A1 (ENSRBIG00000032606) #26	PRKAG3 (ENSRBIG00000007017)	WNT6 (ENSRBIG00000007103)	WNT10A (ENSRBIG00000045014)	CDK5R2 (ENSRBIG00000000138)	FEV (ENSRBIG00000045018)	CRYBA2 (ENSRBIG00000045013)	CFAP65 (ENSRBIG00000003141)
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00390000001225.l #22
Golden snub-nosed monkey	MODERN SPECIES	1075					SLC39A8 (ENSRROG00000031333)	ENSRROG00000018668	NFKB1 (ENSRROG00000045350)	MANBA (ENSRROG00000032191)	ENSRROG00000045760	UBE2D3 (ENSRROG00000032210)	CISD2 (ENSRROG00000035747)	SLC9B1 (ENSRROG00000031630)	SLC9B2 (ENSRROG00000008847)	BDH2 (ENSRROG00000018432)	CENPE (ENSRROG00000028708)	ENSRROG00000042470 #22
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00910000147456	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00910000147456	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375.w.a	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00910000147456	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375.x	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00560000078504	ENSGT00910000147456	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00950000183120.e.b.a.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375.x	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Sooty mangabey	MODERN SPECIES	663	ENSCATG00000043849	ENSCATG00000036554	TNS1 (ENSCATG00000034565) #27	RUFY4 (ENSCATG00000030237)	ENSCATG00000042173	ARPC2 (ENSCATG00000032760)	GPBAR1 (ENSCATG00000001316)	AAMP (ENSCATG00000037132)	TMBIM1 (ENSCATG00000031237)	PNKD (ENSCATG00000041188)	CATIP (ENSCATG00000034319)	SLC11A1 (ENSCATG00000018339)	CTDSP1 (ENSCATG00000034995)	VIL1 (ENSCATG00000036175)	USP37 (ENSCATG00000023935) #21	CNOT9 (ENSCATG00000045348) #22	PLCD4 (ENSCATG00000033628) #23	ZNF142 (ENSCATG00000044960) #24	BCS1L (ENSCATG00000011743) #25	RNF25 (ENSCATG00000041945)	STK36 (ENSCATG00000041467)	TTLL4 (ENSCATG00000036114)	CYP27A1 (ENSCATG00000021484) #26	PRKAG3 (ENSCATG00000042843)	WNT6 (ENSCATG00000034505)	WNT10A (ENSCATG00000041079)	CDK5R2 (ENSCATG00000021149)	FEV (ENSCATG00000042120)	CRYBA2 (ENSCATG00000036307)	CFAP65 (ENSCATG00000044214)	IHH (ENSCATG00000011857)
Drill	MODERN SPECIES	1431	ENSMLEG00000037293	ENSMLEG00000041534	TNS1 (ENSMLEG00000034804) #27	ENSMLEG00000040349	RUFY4 (ENSMLEG00000027570)	ARPC2 (ENSMLEG00000016253)	GPBAR1 (ENSMLEG00000008525)	AAMP (ENSMLEG00000032210)	PNKD (ENSMLEG00000042812)	TMBIM1 (ENSMLEG00000043631)	CATIP (ENSMLEG00000042937)	SLC11A1 (ENSMLEG00000032955)	CTDSP1 (ENSMLEG00000023644)	VIL1 (ENSMLEG00000044064)	USP37 (ENSMLEG00000037749) #21	CNOT9 (ENSMLEG00000035042) #22	PLCD4 (ENSMLEG00000044086) #23	ENSMLEG00000043382	BCS1L (ENSMLEG00000039984) #25	RNF25 (ENSMLEG00000030033)	STK36 (ENSMLEG00000033696)	TTLL4 (ENSMLEG00000028441)	CYP27A1 (ENSMLEG00000034168) #26	PRKAG3 (ENSMLEG00000028317)	WNT6 (ENSMLEG00000038159)	WNT10A (ENSMLEG00000039687)	FEV (ENSMLEG00000035968)	CRYBA2 (ENSMLEG00000011664)	CFAP65 (ENSMLEG00000035941)	IHH (ENSMLEG00000007404)	NHEJ1 (ENSMLEG00000029105)
Macaca	ANCESTRAL SPECIES	15	ENSGT00910000147456	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375.w.a	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281.v	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Pig-tailed macaque	MODERN SPECIES	570	ENSMNEG00000011932	ENSMNEG00000034828	TNS1 (ENSMNEG00000042642) #27	ENSMNEG00000043970	RUFY4 (ENSMNEG00000035961)	ARPC2 (ENSMNEG00000035269)	GPBAR1 (ENSMNEG00000013403)	AAMP (ENSMNEG00000021957)	PNKD (ENSMNEG00000041541)	TMBIM1 (ENSMNEG00000033212)	CATIP (ENSMNEG00000028662)	SLC11A1 (ENSMNEG00000043330)	CTDSP1 (ENSMNEG00000010458)	VIL1 (ENSMNEG00000034956)	USP37 (ENSMNEG00000038072) #21	CNOT9 (ENSMNEG00000001265) #22	PLCD4 (ENSMNEG00000028669) #23	ZNF142 (ENSMNEG00000041285) #24	BCS1L (ENSMNEG00000035775) #25	RNF25 (ENSMNEG00000039298)	STK36 (ENSMNEG00000041592)	TTLL4 (ENSMNEG00000040167)	CYP27A1 (ENSMNEG00000033809) #26	PRKAG3 (ENSMNEG00000037455)	WNT6 (ENSMNEG00000031462)	WNT10A (ENSMNEG00000043976)	CDK5R2 (ENSMNEG00000012704)	FEV (ENSMNEG00000044702)	CRYBA2 (ENSMNEG00000035350)	CFAP65 (ENSMNEG00000037521)	IHH (ENSMNEG00000042582)
Macaca_a	ANCESTRAL SPECIES	17	ENSGT01100000263539.b.b.b.b.a.a.a.b.b.b	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00940000165497.C.a.a.a.b.a.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375.w.a	ENSGT00940000157916	ENSGT01100000263493.a.a.a.b.a.a.b.b.a.a.a.a.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281.v	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142
Crab-eating macaque	MODERN SPECIES	3	ENSMFAG00000064069	TNS1 (ENSMFAG00000041004) #27	RUFY4 (ENSMFAG00000032847)	CXCR2 (ENSMFAG00000054938)	CXCR1 (ENSMFAG00000047431)	ENSMFAG00000062904	ARPC2 (ENSMFAG00000030106)	AAMP (ENSMFAG00000034415)	PNKD (ENSMFAG00000038281)	TMBIM1 (ENSMFAG00000022782)	CATIP (ENSMFAG00000046057)	SLC11A1 (ENSMFAG00000044291)	CTDSP1 (ENSMFAG00000032883)	VIL1 (ENSMFAG00000043203)	USP37 (ENSMFAG00000003758) #21	CNOT9 (ENSMFAG00000036064) #22	PLCD4 (ENSMFAG00000031094) #23	ZNF142 (ENSMFAG00000043994) #24	BCS1L (ENSMFAG00000044997) #25	RNF25 (ENSMFAG00000000075)	STK36 (ENSMFAG00000003769)	TTLL4 (ENSMFAG00000000211)	ENSMFAG00000049583	ENSMFAG00000063834	CYP27A1 (ENSMFAG00000036102) #26	ENSMFAG00000044297	ENSMFAG00000048149	ENSMFAG00000061914	WNT10A (ENSMFAG00000040659)	ENSMFAG00000017685	FEV (ENSMFAG00000000657)
Vervet Monkey	MODERN SPECIES	1	TNS1 (ENSCSAG00000008987) #27	RUFY4 (ENSCSAG00000008961)	CXCR2 (ENSCSAG00000018774)	CXCR1 (ENSCSAG00000018775)	ARPC2 (ENSCSAG00000008943)	GPBAR1 (ENSCSAG00000018778)	ENSCSAG00000008920	PNKD (ENSCSAG00000008892)	TMBIM1 (ENSCSAG00000008886)	ENSCSAG00000008880	CATIP (ENSCSAG00000008874)	SLC11A1 (ENSCSAG00000008860)	CTDSP1 (ENSCSAG00000008845)	VIL1 (ENSCSAG00000008837)	USP37 (ENSCSAG00000008823) #21	CNOT9 (ENSCSAG00000008806) #22	PLCD4 (ENSCSAG00000008792) #23	ZNF142 (ENSCSAG00000008779) #24	BCS1L (ENSCSAG00000008774) #25	RNF25 (ENSCSAG00000008769)	STK36 (ENSCSAG00000008730)	TTLL4 (ENSCSAG00000008654)	CYP27A1 (ENSCSAG00000008643) #26	PRKAG3 (ENSCSAG00000008637)	WNT6 (ENSCSAG00000008630)	WNT10A (ENSCSAG00000008612)	CDK5R2 (ENSCSAG00000018779)	FEV (ENSCSAG00000008586)	CRYBA2 (ENSCSAG00000008573)	CFAP65 (ENSCSAG00000008506)	IHH (ENSCSAG00000008404)
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00910000147456	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b.mb.a.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225.m #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Cebidae	ANCESTRAL SPECIES	11	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b.mb.a.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225.m #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Marmoset	MODERN SPECIES	18	ENSCJAG00000080758	TNS1 (ENSCJAG00000018487) #27	ENSCJAG00000071965	RUFY4 (ENSCJAG00000018480)	CXCR2 (ENSCJAG00000000744)	CXCR1 (ENSCJAG00000046986)	ARPC2 (ENSCJAG00000010746)	GPBAR1 (ENSCJAG00000022440)	AAMP (ENSCJAG00000010793)	PNKD (ENSCJAG00000073364)	TMBIM1 (ENSCJAG00000010850)	CATIP (ENSCJAG00000010885)	SLC11A1 (ENSCJAG00000010901)	VIL1 (ENSCJAG00000010950)	USP37 (ENSCJAG00000010983) #21	CNOT9 (ENSCJAG00000011079) #22	PLCD4 (ENSCJAG00000038890) #23	ZNF142 (ENSCJAG00000011145) #24	BCS1L (ENSCJAG00000011149) #25	RNF25 (ENSCJAG00000011192)	STK36 (ENSCJAG00000011237)	ENSCJAG00000073749	TTLL4 (ENSCJAG00000011294)	CYP27A1 (ENSCJAG00000011342) #26	ENSCJAG00000083160	PRKAG3 (ENSCJAG00000011362)	WNT6 (ENSCJAG00000011399)	WNT10A (ENSCJAG00000011403)	CDK5R2 (ENSCJAG00000084028)	FEV (ENSCJAG00000070578)	CRYBA2 (ENSCJAG00000011426)
Cebidae_a	ANCESTRAL SPECIES	16	ENSGT00940000158542 #29	ENSGT00390000002752.x.d	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00390000016794.b.mb.a.a	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225.m #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Capuchin	MODERN SPECIES	91	ENSCCAG00000031306	CPEB4 (ENSCCAG00000037039)	C5orf47 (ENSCCAG00000038085)	ENSCCAG00000036672	NSG2 (ENSCCAG00000024923)	MSX2 (ENSCCAG00000037478)	ENSCCAG00000036905	AAMP (ENSCCAG00000016105)	PNKD (ENSCCAG00000036713)	TMBIM1 (ENSCCAG00000037987)	CATIP (ENSCCAG00000029357)	SLC11A1 (ENSCCAG00000036035)	CTDSP1 (ENSCCAG00000035606)	VIL1 (ENSCCAG00000026608)	USP37 (ENSCCAG00000036554) #21	ENSCCAG00000017272 #22	PLCD4 (ENSCCAG00000037074) #23	ZNF142 (ENSCCAG00000025625) #24	RNF25 (ENSCCAG00000022960)	BCS1L (ENSCCAG00000030334) #25	STK36 (ENSCCAG00000028077)	TTLL4 (ENSCCAG00000033755)	CYP27A1 (ENSCCAG00000021874) #26	PRKAG3 (ENSCCAG00000033243)	WNT6 (ENSCCAG00000002129)	WNT10A (ENSCCAG00000033457)	ENSCCAG00000017356	CDK5R2 (ENSCCAG00000017322)	FEV (ENSCCAG00000034592)	CRYBA2 (ENSCCAG00000033225)	CFAP65 (ENSCCAG00000032465)
Bolivian squirrel monkey	MODERN SPECIES	56	IGFBP5 (ENSSBOG00000019704) #28	TNP1 (ENSSBOG00000033620)	ENSSBOG00000029951	ENSSBOG00000033112	TNS1 (ENSSBOG00000022703) #27	RUFY4 (ENSSBOG00000002350)	ENSSBOG00000032077	AAMP (ENSSBOG00000023993)	TMBIM1 (ENSSBOG00000029929)	PNKD (ENSSBOG00000036000)	CATIP (ENSSBOG00000036075)	SLC11A1 (ENSSBOG00000035738)	CTDSP1 (ENSSBOG00000033449)	VIL1 (ENSSBOG00000031003)	USP37 (ENSSBOG00000019926) #21	ENSSBOG00000022872 #22	PLCD4 (ENSSBOG00000033997) #23	ZNF142 (ENSSBOG00000024040) #24	BCS1L (ENSSBOG00000031182) #25	RNF25 (ENSSBOG00000020870)	STK36 (ENSSBOG00000032303)	TTLL4 (ENSSBOG00000029426)	ENSSBOG00000030556	ENSSBOG00000024877	CYP27A1 (ENSSBOG00000035228) #26	PRKAG3 (ENSSBOG00000034985)	WNT6 (ENSSBOG00000034349)	WNT10A (ENSSBOG00000028713)	CDK5R2 (ENSSBOG00000027687)	FEV (ENSSBOG00000031391)	CRYBA2 (ENSSBOG00000024164)
Mas night monkey	MODERN SPECIES	357	ENSANAG00000031237	ENSANAG00000026120	TNS1 (ENSANAG00000019397) #27	RUFY4 (ENSANAG00000022643)	CXCR2 (ENSANAG00000027046)	CXCR1 (ENSANAG00000009008)	ENSANAG00000022998	AAMP (ENSANAG00000034096)	TMBIM1 (ENSANAG00000020355)	PNKD (ENSANAG00000019661)	CATIP (ENSANAG00000035336)	SLC11A1 (ENSANAG00000038479)	CTDSP1 (ENSANAG00000033831)	VIL1 (ENSANAG00000020565)	USP37 (ENSANAG00000031880) #21	ENSANAG00000038509 #22	PLCD4 (ENSANAG00000032428) #23	ZNF142 (ENSANAG00000036961) #24	BCS1L (ENSANAG00000034542) #25	RNF25 (ENSANAG00000029471)	STK36 (ENSANAG00000030567)	TTLL4 (ENSANAG00000030178)	CYP27A1 (ENSANAG00000034366) #26	PRKAG3 (ENSANAG00000032002)	WNT6 (ENSANAG00000026110)	WNT10A (ENSANAG00000026652)	CDK5R2 (ENSANAG00000013180)	FEV (ENSANAG00000022907)	CRYBA2 (ENSANAG00000030100)	CFAP65 (ENSANAG00000026544)	IHH (ENSANAG00000038500)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000001225.n #22
Mas night monkey	MODERN SPECIES	533	CAMKK1 (ENSANAG00000026538)	P2RX1 (ENSANAG00000020873)	ATP2A3 (ENSANAG00000028942)	ZZEF1 (ENSANAG00000026636)	CYB5D2 (ENSANAG00000025749)	ENSANAG00000019538	ANKFY1 (ENSANAG00000036830)	ENSANAG00000022222	UBE2G1 (ENSANAG00000037126)	SPNS2 (ENSANAG00000022866)	MYBBP1A (ENSANAG00000035807)	GGT6 (ENSANAG00000033795)	SMTNL2 (ENSANAG00000037635)	ALOX15 (ENSANAG00000023751)	ENSANAG00000034402	ENSANAG00000032449 #22	ENSANAG00000005028	OR5H6 (ENSANAG00000032780)	ENSANAG00000017818
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000001225.n #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000001225.n #22
Capuchin	MODERN SPECIES	1086																ENSCCAG00000022084 #22
Bolivian squirrel monkey	MODERN SPECIES	95	ITGAE (ENSSBOG00000029571)	NCBP3 (ENSSBOG00000023178)	CAMKK1 (ENSSBOG00000035609)	P2RX1 (ENSSBOG00000025078)	ATP2A3 (ENSSBOG00000025936)	ZZEF1 (ENSSBOG00000019866)	CYB5D2 (ENSSBOG00000016637)	ANKFY1 (ENSSBOG00000034382)	ENSSBOG00000025559	SPNS3 (ENSSBOG00000029998)	SPNS2 (ENSSBOG00000022897)	MYBBP1A (ENSSBOG00000020401)	GGT6 (ENSSBOG00000028876)	SMTNL2 (ENSSBOG00000031152)	ALOX15 (ENSSBOG00000031283)	ENSSBOG00000032707 #22	UNC45B (ENSSBOG00000019113)	NLE1 (ENSSBOG00000023552)	FNDC8 (ENSSBOG00000029279)	RAD51D (ENSSBOG00000033587)	RFFL (ENSSBOG00000028909)	LIG3 (ENSSBOG00000030290)	CCT6B (ENSSBOG00000025684)	TMEM132E (ENSSBOG00000029140)	CCL1 (ENSSBOG00000014955)	ENSSBOG00000032338	CCL8 (ENSSBOG00000018317)	CCL11 (ENSSBOG00000028311)	CCL7 (ENSSBOG00000033930)	CCL2 (ENSSBOG00000035114)	ASIC2 (ENSSBOG00000032279)
Tarsier	MODERN SPECIES	4547													CTDSP1 (ENSTSYG00000030290)	VIL1 (ENSTSYG00000026232)	USP37 (ENSTSYG00000007532) #21	CNOT9 (ENSTSYG00000007671) #22	PLCD4 (ENSTSYG00000007128) #23	ENSTSYG00000007129	BCS1L (ENSTSYG00000007133) #25	RNF25 (ENSTSYG00000026260)	STK36 (ENSTSYG00000007141)	TTLL4 (ENSTSYG00000010347)	CYP27A1 (ENSTSYG00000011317) #26	PRKAG3 (ENSTSYG00000011327)	WNT6 (ENSTSYG00000031757)	WNT10A (ENSTSYG00000025654)	CRYBA2 (ENSTSYG00000013997)	CFAP65 (ENSTSYG00000001842)	IHH (ENSTSYG00000027903)	NHEJ1 (ENSTSYG00000008101)	SLC23A3 (ENSTSYG00000008144)
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00950000185166	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415.b #25	ENSGT00940000163279	ENSGT00390000005415.a.a #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00950000185166	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415.a.a #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Lemuriformes_a	ANCESTRAL SPECIES	15	ENSGT00940000155400.B #27	ENSGT01050000244848.A.a.g.a	ENSGT01050000244848.A.a.g.b	ENSGT00940000154044.a.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00950000185166	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415.a.a #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Greater bamboo lemur	MODERN SPECIES	286	IGFBP5 (ENSPSMG00000024289) #28	TNS1 (ENSPSMG00000024558) #27	ENSPSMG00000024666	CXCR1 (ENSPSMG00000024669)	ARPC2 (ENSPSMG00000024679)	GPBAR1 (ENSPSMG00000024691)	AAMP (ENSPSMG00000024724)	PNKD (ENSPSMG00000024742)	TMBIM1 (ENSPSMG00000024758)	CATIP (ENSPSMG00000024776)	SLC11A1 (ENSPSMG00000024786)	CTDSP1 (ENSPSMG00000024799)	VIL1 (ENSPSMG00000024810)	ENSPSMG00000024815 #21	ENSPSMG00000024821	CNOT9 (ENSPSMG00000024845) #22	PLCD4 (ENSPSMG00000024883) #23	ENSPSMG00000024891	BCS1L (ENSPSMG00000024908) #25	RNF25 (ENSPSMG00000024931)	STK36 (ENSPSMG00000024959)	TTLL4 (ENSPSMG00000025027)	CYP27A1 (ENSPSMG00000025068) #26	PRKAG3 (ENSPSMG00000025078)	WNT6 (ENSPSMG00000025081)	WNT10A (ENSPSMG00000025083)	CDK5R2 (ENSPSMG00000025090)	FEV (ENSPSMG00000025093)	CRYBA2 (ENSPSMG00000025100)	ENSPSMG00000025107	IHH (ENSPSMG00000025112)
Coquerels sifaka	MODERN SPECIES	259				ENSPCOG00000015122 #27	CXCR2 (ENSPCOG00000013229)	ENSPCOG00000026852	ARPC2 (ENSPCOG00000004255)	AAMP (ENSPCOG00000013148)	PNKD (ENSPCOG00000019839)	TMBIM1 (ENSPCOG00000005693)	CATIP (ENSPCOG00000010306)	SLC11A1 (ENSPCOG00000020402)	CTDSP1 (ENSPCOG00000020126)	VIL1 (ENSPCOG00000002346)	USP37 (ENSPCOG00000020172) #21	CNOT9 (ENSPCOG00000026587) #22	PLCD4 (ENSPCOG00000019686) #23	ENSPCOG00000003841	BCS1L (ENSPCOG00000019115) #25	RNF25 (ENSPCOG00000015285)	STK36 (ENSPCOG00000021753)	TTLL4 (ENSPCOG00000023937)	CYP27A1 (ENSPCOG00000017454) #26	PRKAG3 (ENSPCOG00000020879)	WNT6 (ENSPCOG00000016987)	WNT10A (ENSPCOG00000027492)	CDK5R2 (ENSPCOG00000004726)	FEV (ENSPCOG00000026278)	CRYBA2 (ENSPCOG00000019254)	CFAP65 (ENSPCOG00000022616)	IHH (ENSPCOG00000007373)
Mouse lemur	MODERN SPECIES	30	ENSMICG00000035435	TNS1 (ENSMICG00000017467) #27	ENSMICG00000043345	ENSMICG00000046166	ENSMICG00000042714	CXCR1 (ENSMICG00000047045)	ENSMICG00000006821	AAMP (ENSMICG00000006828)	TMBIM1 (ENSMICG00000006846)	PNKD (ENSMICG00000042547)	CATIP (ENSMICG00000027695)	SLC11A1 (ENSMICG00000032402)	CTDSP1 (ENSMICG00000033882)	VIL1 (ENSMICG00000005119)	USP37 (ENSMICG00000005129) #21	CNOT9 (ENSMICG00000005152) #22	PLCD4 (ENSMICG00000005159) #23	ENSMICG00000045688	ENSMICG00000005175 #25	RNF25 (ENSMICG00000005179)	STK36 (ENSMICG00000005186)	TTLL4 (ENSMICG00000005204)	CYP27A1 (ENSMICG00000006999) #26	PRKAG3 (ENSMICG00000007009)	WNT6 (ENSMICG00000045948)	WNT10A (ENSMICG00000043872)	CDK5R2 (ENSMICG00000007028)	FEV (ENSMICG00000047914)	CRYBA2 (ENSMICG00000042726)	ENSMICG00000007043	IHH (ENSMICG00000026390)
Bushbaby	MODERN SPECIES	128	RUFY4 (ENSOGAG00000013282)	ENSOGAG00000016216	CXCR1 (ENSOGAG00000013847)	ENSOGAG00000013848	GPBAR1 (ENSOGAG00000001787)	AAMP (ENSOGAG00000001788)	ENSOGAG00000029318	TMBIM1 (ENSOGAG00000001793)	PNKD (ENSOGAG00000001792)	CATIP (ENSOGAG00000004152)	SLC11A1 (ENSOGAG00000004156)	CTDSP1 (ENSOGAG00000004159)	VIL1 (ENSOGAG00000004160)	ENSOGAG00000033815	USP37 (ENSOGAG00000004165) #21	CNOT9 (ENSOGAG00000004173) #22	PLCD4 (ENSOGAG00000004178) #23	ZNF142 (ENSOGAG00000027693) #24	BCS1L (ENSOGAG00000004183) #25	RNF25 (ENSOGAG00000004184)	STK36 (ENSOGAG00000004188)	TTLL4 (ENSOGAG00000004192)	CYP27A1 (ENSOGAG00000004196) #26	PRKAG3 (ENSOGAG00000004200)	WNT6 (ENSOGAG00000014075)	WNT10A (ENSOGAG00000024185)	CDK5R2 (ENSOGAG00000031192)	ENSOGAG00000026329	CRYBA2 (ENSOGAG00000014089)	CFAP65 (ENSOGAG00000014092)	IHH (ENSOGAG00000014108)
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Xenarthra	ANCESTRAL SPECIES	8	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000160299	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207	ENSGT00390000009940	ENSGT00950000182953.A
Armadillo	MODERN SPECIES	2672	IGFBP5 (ENSDNOG00000045267) #28	TNP1 (ENSDNOG00000018270)	TNS1 (ENSDNOG00000018818) #27	RUFY4 (ENSDNOG00000049670)	ENSDNOG00000025954	ENSDNOG00000045181	ENSDNOG00000006037	AAMP (ENSDNOG00000006054)	TMBIM1 (ENSDNOG00000032861)	PNKD (ENSDNOG00000046154)	CATIP (ENSDNOG00000047757)	SLC11A1 (ENSDNOG00000049429)	CTDSP1 (ENSDNOG00000043716)	VIL1 (ENSDNOG00000012053)	USP37 (ENSDNOG00000012085) #21	CNOT9 (ENSDNOG00000012115) #22	PLCD4 (ENSDNOG00000008035) #23	ENSDNOG00000033633	BCS1L (ENSDNOG00000020014) #25	RNF25 (ENSDNOG00000020015)	STK36 (ENSDNOG00000020016)	TTLL4 (ENSDNOG00000001767)	ENSDNOG00000018708 #26
Sloth	MODERN SPECIES	3660																CNOT9 (ENSCHOG00000006279) #22
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Tenrec	MODERN SPECIES	3169															USP37 (ENSETEG00000006607) #21	CNOT9 (ENSETEG00000006614) #22
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00390000000539	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.h	ENSGT01050000244848.A.a.g.b	ENSGT00390000016794.b	ENSGT00390000010256	ENSGT00940000153648.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163279	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00950000183019.f.b.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000159207
Hyrax	MODERN SPECIES	3324																CNOT9 (ENSPCAG00000008984) #22
Elephant	MODERN SPECIES	301	TNP1 (ENSLAFG00000032172)	TNS1 (ENSLAFG00000000579) #27	ENSLAFG00000030116	ENSLAFG00000026970	CXCR1 (ENSLAFG00000027224)	ARPC2 (ENSLAFG00000007414)	GPBAR1 (ENSLAFG00000031029)	AAMP (ENSLAFG00000007420)	TMBIM1 (ENSLAFG00000007432)	PNKD (ENSLAFG00000007427)	CATIP (ENSLAFG00000003173)	SLC11A1 (ENSLAFG00000001570)	CTDSP1 (ENSLAFG00000023374)	VIL1 (ENSLAFG00000026446)	USP37 (ENSLAFG00000015247) #21	CNOT9 (ENSLAFG00000012288) #22	PLCD4 (ENSLAFG00000012296) #23	ENSLAFG00000012305	BCS1L (ENSLAFG00000012315) #25	RNF25 (ENSLAFG00000012317)	STK36 (ENSLAFG00000012325)	TTLL4 (ENSLAFG00000017623)	CYP27A1 (ENSLAFG00000017636) #26	PRKAG3 (ENSLAFG00000015976)	WNT6 (ENSLAFG00000017647)	WNT10A (ENSLAFG00000012543)	CDK5R2 (ENSLAFG00000028414)	FEV (ENSLAFG00000030729)	CRYBA2 (ENSLAFG00000008088)	CFAP65 (ENSLAFG00000017651)	IHH (ENSLAFG00000010467)
Sauria	ANCESTRAL SPECIES		ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00950000182969.A	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00950000185166	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT00940000161535	ENSGT00940000153336	ENSGT00940000153309	ENSGT00940000153339	ENSGT00940000166665	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00950000185166	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000164110	ENSGT00390000000862	ENSGT00950000182953.A	ENSGT00390000009940	ENSGT00940000159207	ENSGT00940000160059.a.b	ENSGT00430000031142	ENSGT00940000160306	ENSGT00940000161562	ENSGT00390000008812.a
Episquamata	ANCESTRAL SPECIES		ENSGT00390000016794.b	ENSGT00940000163961.b	ENSGT00950000182969.A	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a.d	ENSGT01050000244890.a.b.a.c	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000164110	ENSGT00390000000862	ENSGT00950000182953.A	ENSGT00390000009940	ENSGT00940000159207	ENSGT00940000160059.a.b	ENSGT00430000031142	ENSGT00940000160306	ENSGT00940000161562	ENSGT00390000008812.a
Toxicofera	ANCESTRAL SPECIES	10	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000163961.b	ENSGT00950000182969.A	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT01050000244890.a.b.a.d	ENSGT01050000244890.a.b.a.c	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000164110	ENSGT00390000000862	ENSGT00950000182953.A	ENSGT00390000009940	ENSGT00940000159207	ENSGT00940000160059.a.b	ENSGT00430000031142	ENSGT00940000160306	ENSGT00940000161562	ENSGT00390000008812.a
Elapidae	ANCESTRAL SPECIES		ENSGT00390000016794.b	ENSGT00940000163961.b	ENSGT00950000182969.A	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT01050000244890.a.b.a.d	ENSGT01050000244890.a.b.a.c	ENSGT00960000190536	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375.m.a	ENSGT00940000164110	ENSGT00390000000862	ENSGT00950000182953.A	ENSGT00390000009940	ENSGT00940000159207	ENSGT00940000160059.a.b	ENSGT00430000031142	ENSGT00940000160306	ENSGT00940000161562	ENSGT00390000008812.a
Indian cobra	MODERN SPECIES		ENSNNAG00000014894	ARPC2 (ENSNNAG00000014906)	ENSNNAG00000014932	ENSNNAG00000014960	ENSNNAG00000014976	AAMP (ENSNNAG00000014988)	ENSNNAG00000015008	TMBIM1 (ENSNNAG00000015027)	ENSNNAG00000015053	PNKD (ENSNNAG00000015068)	CATIP (ENSNNAG00000015139)	SLC11A1 (ENSNNAG00000015159)	CTDSP1 (ENSNNAG00000015173)	VIL1 (ENSNNAG00000015190)	USP37 (ENSNNAG00000015217) #21	CNOT9 (ENSNNAG00000015312) #22	PLCD4 (ENSNNAG00000015326) #23	ZNF142 (ENSNNAG00000015347) #24	BCS1L (ENSNNAG00000015374) #25	RNF25 (ENSNNAG00000015392)	STK36 (ENSNNAG00000015420)	ENSNNAG00000015476	ENSNNAG00000015544	NHEJ1 (ENSNNAG00000015640)	IHH (ENSNNAG00000015652)	ENSNNAG00000015659	CFAP65 (ENSNNAG00000015695)	ENSNNAG00000015900	ENSNNAG00000015915	FEV (ENSNNAG00000015925)	CDK5R2 (ENSNNAG00000015929)
Elapidae_a	ANCESTRAL SPECIES	5	ENSGT01050000244848.A.a.c.a	ENSGT00390000016794.b	ENSGT00940000163961.b	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a.k	ENSGT01050000244890.a.b.a.d	ENSGT01050000244890.a.b.a.c	ENSGT00960000190536	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375.m.a	ENSGT00940000164110	ENSGT00390000000862	ENSGT00950000182953.A	ENSGT00390000009940	ENSGT00940000159207	ENSGT00940000160059.a.b	ENSGT00430000031142	ENSGT00940000160306	ENSGT00940000161562	ENSGT00390000008812.a
Blue-lipped sea krait	MODERN SPECIES	7640														VIL1 (ENSLLTG00000005839)	USP37 (ENSLLTG00000005795) #21	CNOT9 (ENSLLTG00000005778) #22
Acanthophiinae	ANCESTRAL SPECIES	7	ENSGT00390000016794.b	ENSGT00940000163961.b	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a.k	ENSGT01010000229930	ENSGT01050000244890.a.b.a.d	ENSGT01050000244890.a.b.a.c	ENSGT00960000190536	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375.m.a	ENSGT00940000164110	ENSGT00390000000862	ENSGT00950000182953.A	ENSGT00390000009940	ENSGT00940000159207	ENSGT00940000160059.a.b	ENSGT00430000031142	ENSGT00940000160306	ENSGT00940000161562	ENSGT00390000008812.a
Mainland tiger snake	MODERN SPECIES	12	ENSNSUG00000012072	ARPC2 (ENSNSUG00000012073)	ENSNSUG00000012074	ENSNSUG00000012075	AAMP (ENSNSUG00000012076)	ENSNSUG00000012077	ENSNSUG00000012078	ENSNSUG00000012079	ENSNSUG00000012080	PNKD (ENSNSUG00000012081)	CATIP (ENSNSUG00000012090)	SLC11A1 (ENSNSUG00000012091)	CTDSP1 (ENSNSUG00000012096)	VIL1 (ENSNSUG00000012097)	USP37 (ENSNSUG00000012102) #21	CNOT9 (ENSNSUG00000012104) #22	PLCD4 (ENSNSUG00000012131) #23	ZNF142 (ENSNSUG00000012133) #24	BCS1L (ENSNSUG00000012134) #25	RNF25 (ENSNSUG00000012135)	ENSNSUG00000012136	ENSNSUG00000012137	ENSNSUG00000012138	CNPPD1 (ENSNSUG00000012140)	SLC23A3 (ENSNSUG00000012142)	NHEJ1 (ENSNSUG00000012145)	IHH (ENSNSUG00000012147)	ENSNSUG00000012148	CFAP65 (ENSNSUG00000012149)	CRYBA2 (ENSNSUG00000012153)	FEV (ENSNSUG00000012155)
Eastern brown snake	MODERN SPECIES	37	IGFBP5 (ENSPTXG00000006946) #28	ENSPTXG00000006947	TNS1 (ENSPTXG00000006948) #27	ENSPTXG00000006949	ENSPTXG00000006950	ARPC2 (ENSPTXG00000006951)	ENSPTXG00000006952	ENSPTXG00000006953	ENSPTXG00000006954	ENSPTXG00000006955	PNKD (ENSPTXG00000006978)	SLC11A1 (ENSPTXG00000007019)	CTDSP1 (ENSPTXG00000007025)	VIL1 (ENSPTXG00000007026)	USP37 (ENSPTXG00000008022) #21	CNOT9 (ENSPTXG00000008023) #22	PLCD4 (ENSPTXG00000008024) #23	ZNF142 (ENSPTXG00000008026) #24	BCS1L (ENSPTXG00000008027) #25	RNF25 (ENSPTXG00000008028)	ENSPTXG00000008029	ENSPTXG00000008030	ENSPTXG00000008031	CNPPD1 (ENSPTXG00000008032)	NHEJ1 (ENSPTXG00000008033)	IHH (ENSPTXG00000008034)	ENSPTXG00000008035	CFAP65 (ENSPTXG00000008036)	CRYBA2 (ENSPTXG00000008037)	FEV (ENSPTXG00000008038)	CDK5R2 (ENSPTXG00000008040)
Lizard	MODERN SPECIES		ENSACAG00000035157	ENSACAG00000041559	ENSACAG00000044804	ARPC2 (ENSACAG00000001089)	ENSACAG00000001171	ENSACAG00000001282	ENSACAG00000027443	ENSACAG00000001349	TMBIM1 (ENSACAG00000001486)	ENSACAG00000001617	CATIP (ENSACAG00000001693)	SLC11A1 (ENSACAG00000001716)	CTDSP1 (ENSACAG00000001954)	VIL1 (ENSACAG00000002214)	USP37 (ENSACAG00000002348) #21	CNOT9 (ENSACAG00000002521) #22	PLCD4 (ENSACAG00000002589) #23	ZNF142 (ENSACAG00000002711) #24	BCS1L (ENSACAG00000002750) #25	ENSACAG00000002813	ENSACAG00000042182	RNF25 (ENSACAG00000002824)	STK36 (ENSACAG00000002906)	ENSACAG00000003029	CNPPD1 (ENSACAG00000003074)	NHEJ1 (ENSACAG00000003184)	IHH (ENSACAG00000035083)	ENSACAG00000005185	CFAP65 (ENSACAG00000005192)	ENSACAG00000041585	CRYBA2 (ENSACAG00000005219)
Laterata	ANCESTRAL SPECIES	2	ENSGT00950000186252	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a.d	ENSGT01050000244890.a.b.a.c	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000164110	ENSGT00390000000862	ENSGT00950000182953.A	ENSGT00390000009940	ENSGT00940000159207	ENSGT00940000160059.a.b	ENSGT00430000031142	ENSGT00940000160306	ENSGT00940000161562	ENSGT00390000008812.a
Common wall lizard	MODERN SPECIES		ENSPMRG00000019459	ENSPMRG00000019455	ARPC2 (ENSPMRG00000019440)	ENSPMRG00000019427	ENSPMRG00000019412	AAMP (ENSPMRG00000019397)	ENSPMRG00000019383	ENSPMRG00000019370	ENSPMRG00000019360	PNKD (ENSPMRG00000019349)	CATIP (ENSPMRG00000019337)	SLC11A1 (ENSPMRG00000019320)	CTDSP1 (ENSPMRG00000019308)	VIL1 (ENSPMRG00000019290)	USP37 (ENSPMRG00000019266) #21	CNOT9 (ENSPMRG00000019254) #22	PLCD4 (ENSPMRG00000019242) #23	ZNF142 (ENSPMRG00000019149) #24	BCS1L (ENSPMRG00000019126) #25	RNF25 (ENSPMRG00000019124)	STK36 (ENSPMRG00000019111)	ENSPMRG00000019100	IHH (ENSPMRG00000019097)	TEX12 (ENSPMRG00000019095)	ENSPMRG00000019092	CFAP65 (ENSPMRG00000018982)	CRYBA2 (ENSPMRG00000018935)	FEV (ENSPMRG00000018929)	CDK5R2 (ENSPMRG00000018924)	ENSPMRG00000018918	WNT10A (ENSPMRG00000018911)
Argentine black and white tegu	MODERN SPECIES	27	ENSSMRG00000011480	ENSSMRG00000011449	ARPC2 (ENSSMRG00000011448)	ENSSMRG00000011447	ENSSMRG00000011446	ENSSMRG00000011445	AAMP (ENSSMRG00000011444)	ENSSMRG00000011442	TMBIM1 (ENSSMRG00000011437)	PNKD (ENSSMRG00000011365)	CATIP (ENSSMRG00000011360)	SLC11A1 (ENSSMRG00000011338)	CTDSP1 (ENSSMRG00000011333)	VIL1 (ENSSMRG00000011298)	USP37 (ENSSMRG00000011294) #21	CNOT9 (ENSSMRG00000011292) #22	PLCD4 (ENSSMRG00000011291) #23	ZNF142 (ENSSMRG00000011290) #24	BCS1L (ENSSMRG00000011289) #25	ENSSMRG00000011288	RNF25 (ENSSMRG00000011285)	STK36 (ENSSMRG00000011282)	ENSSMRG00000011279	CNPPD1 (ENSSMRG00000011276)	SLC23A3 (ENSSMRG00000011273)	NHEJ1 (ENSSMRG00000011260)	IHH (ENSSMRG00000011251)	ENSSMRG00000011242	CFAP65 (ENSSMRG00000011232)	CRYBA2 (ENSSMRG00000011195)	FEV (ENSSMRG00000011194)
tuatara	MODERN SPECIES	626										SLC11A1 (ENSSPUG00000013131)	CTDSP1 (ENSSPUG00000013111)	ENSSPUG00000013084	ENSSPUG00000013074 #21	ENSSPUG00000013063 #21	ENSSPUG00000013055	CNOT9 (ENSSPUG00000013048) #22	PLCD4 (ENSSPUG00000012895) #23	ZNF142 (ENSSPUG00000012839) #24	BCS1L (ENSSPUG00000012830) #25	ENSSPUG00000012823	CYP27A24 (ENSSPUG00000012783) #26	RNF25 (ENSSPUG00000012770)
Archelosauria	ANCESTRAL SPECIES	8	ENSGT01050000244848.A.a	ENSGT00940000154044.a.b	ENSGT00390000016794.b	ENSGT00950000182969.A	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00950000186252	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00950000182969.A	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00950000182969.A	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a.e	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
Emydidae	ANCESTRAL SPECIES	4	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00950000182969.A	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a.e	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00430000031142	ENSGT00940000160059.a.b	ENSGT00940000156160
Three-toed box turtle	MODERN SPECIES	25	IGFBP2 (ENSTMTG00000000287) #29	IGFBP5 (ENSTMTG00000000269) #28	ENSTMTG00000000215 #27	ENSTMTG00000000182	ENSTMTG00000000165	ARPC2 (ENSTMTG00000000132)	ENSTMTG00000000089	ENSTMTG00000000061	AAMP (ENSTMTG00000002611)	PNKD (ENSTMTG00000002598)	CATIP (ENSTMTG00000002574)	SLC11A1 (ENSTMTG00000002565)	VIL1 (ENSTMTG00000002541)	ENSTMTG00000002533	USP37 (ENSTMTG00000002474) #21	CNOT9 (ENSTMTG00000002465) #22	PLCD4 (ENSTMTG00000002429) #23	ZNF142 (ENSTMTG00000002420) #24	BCS1L (ENSTMTG00000002414) #25	RNF25 (ENSTMTG00000002407)	STK36 (ENSTMTG00000002393)	TTLL4 (ENSTMTG00000002381)	ENSTMTG00000002369	CYP27A1 (ENSTMTG00000002362) #26	WNT6 (ENSTMTG00000002357)	ENSTMTG00000002349	CDK5R2 (ENSTMTG00000002343)	FEV (ENSTMTG00000002340)	CFAP65 (ENSTMTG00000002327)	ENSTMTG00000002320	NHEJ1 (ENSTMTG00000002315)
painted turtle	MODERN SPECIES	697	ENSCPBG00000013294	ENSCPBG00000013291	ARPC2 (ENSCPBG00000013289)	ENSCPBG00000013287	ENSCPBG00000013286	ENSCPBG00000013285	AAMP (ENSCPBG00000013283)	ENSCPBG00000013281	TMBIM1 (ENSCPBG00000013279)	PNKD (ENSCPBG00000013269)	CATIP (ENSCPBG00000013266)	SLC11A1 (ENSCPBG00000013259)	CTDSP1 (ENSCPBG00000013256)	VIL1 (ENSCPBG00000013251)	USP37 (ENSCPBG00000013249) #21	CNOT9 (ENSCPBG00000013247) #22	PLCD4 (ENSCPBG00000013241) #23	ZNF142 (ENSCPBG00000013238) #24	BCS1L (ENSCPBG00000013235) #25	RNF25 (ENSCPBG00000013230)	STK36 (ENSCPBG00000013226)	TTLL4 (ENSCPBG00000013217)	PRKAG3 (ENSCPBG00000013193)	CYP27A1 (ENSCPBG00000013184) #26	WNT6 (ENSCPBG00000013182)	ENSCPBG00000013181	CFAP65 (ENSCPBG00000013177)	ENSCPBG00000013176	ENSCPBG00000013175	SLC23A3 (ENSCPBG00000013171)	ENSCPBG00000013167
Testudinidae	ANCESTRAL SPECIES	8	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00950000182969.A	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a.e	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b	ENSGT00940000159207
Goode s thornscrub tortoise	MODERN SPECIES	2	ENSGEVG00005017649	ENSGEVG00005017657	ARPC2 (ENSGEVG00005017680)	ENSGEVG00005017713	ENSGEVG00005017764	AAMP (ENSGEVG00005017816)	ENSGEVG00005017838	TMBIM1 (ENSGEVG00005017854)	ENSGEVG00005017881	PNKD (ENSGEVG00005017904)	CATIP (ENSGEVG00005017934)	SLC11A1 (ENSGEVG00005018102)	CTDSP1 (ENSGEVG00005018850)	VIL1 (ENSGEVG00005018920)	USP37 (ENSGEVG00005018974) #21	CNOT9 (ENSGEVG00005019017) #22	PLCD4 (ENSGEVG00005019056) #23	ZNF142 (ENSGEVG00005019203) #24	BCS1L (ENSGEVG00005019212) #25	RNF25 (ENSGEVG00005019222)	STK36 (ENSGEVG00005019246)	TTLL4 (ENSGEVG00005019289)	CYP27A1 (ENSGEVG00005019336) #26	WNT6 (ENSGEVG00005019474)	WNT10A (ENSGEVG00005019480)	CDK5R2 (ENSGEVG00005019485)	FEV (ENSGEVG00005019492)	CRYBA2 (ENSGEVG00005019499)	CFAP65 (ENSGEVG00005019513)	ENSGEVG00005019538	IHH (ENSGEVG00005019548)
Abingdon island giant tortoise	MODERN SPECIES	2469	ARPC2 (ENSCABG00000009366)	ENSCABG00000009370	ENSCABG00000009377	AAMP (ENSCABG00000009381)	ENSCABG00000009385	ENSCABG00000009391	ENSCABG00000009399	PNKD (ENSCABG00000009402)	CATIP (ENSCABG00000009404)	SLC11A1 (ENSCABG00000009407)	ENSCABG00000009431	CTDSP1 (ENSCABG00000009433)	VIL1 (ENSCABG00000009440)	USP37 (ENSCABG00000009451) #21	ENSCABG00000009623	CNOT9 (ENSCABG00000009625) #22	UFM1 (ENSCABG00000009627)	FREM2 (ENSCABG00000009630)
Chinese turtle	MODERN SPECIES	246															USP37 (ENSPSIG00000009171) #21	CNOT9 (ENSPSIG00000010891) #22	PLCD4 (ENSPSIG00000012714) #23	ZNF142 (ENSPSIG00000015165) #24	BCS1L (ENSPSIG00000016756) #25	RNF25 (ENSPSIG00000017298)	STK36 (ENSPSIG00000017336)	TTLL4 (ENSPSIG00000017998)
Archosauria	ANCESTRAL SPECIES	6	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00950000186252	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
Aves	ANCESTRAL SPECIES	8	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00950000186252	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
African ostrich	MODERN SPECIES	240			SMARCAL1 (ENSSCUG00000004937)	IGFBP2 (ENSSCUG00000004940) #29	IGFBP5 (ENSSCUG00000004941) #28	TNS1 (ENSSCUG00000004958) #27	ENSSCUG00000004986	ENSSCUG00000004988	ARPC2 (ENSSCUG00000004990)	AAMP (ENSSCUG00000004992)	TMBIM1 (ENSSCUG00000004993)	SLC11A1 (ENSSCUG00000004994)	CTDSP1 (ENSSCUG00000004996)	VIL1 (ENSSCUG00000004999)	USP37 (ENSSCUG00000005006) #21	CNOT9 (ENSSCUG00000005010) #22	PLCD4 (ENSSCUG00000005021) #23	ENSSCUG00000005071	ZNF142 (ENSSCUG00000005073) #24	BCS1L (ENSSCUG00000005074) #25	RNF25 (ENSSCUG00000005075)	STK36 (ENSSCUG00000005078)	TTLL4 (ENSSCUG00000005080)	ENSSCUG00000005082	ENSSCUG00000005083	ENSSCUG00000005084 #26	WNT10A (ENSSCUG00000005087)
Neognathae	ANCESTRAL SPECIES	6	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00950000186252	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00950000186252	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT00950000186252	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
Golden eagle	MODERN SPECIES	22	IGFBP5 (ENSACCG00020002186) #28	ENSACCG00020002174	TNS1 (ENSACCG00020002099) #27	ENSACCG00020002007	ENSACCG00020001994	ARPC2 (ENSACCG00020001977)	AAMP (ENSACCG00020001953)	ENSACCG00020001941	TMBIM1 (ENSACCG00020001923)	PNKD (ENSACCG00020001881)	CATIP (ENSACCG00020001823)	SLC11A1 (ENSACCG00020001785)	CTDSP1 (ENSACCG00020001726)	VIL1 (ENSACCG00020001336)	USP37 (ENSACCG00020001017) #21	CNOT9 (ENSACCG00020000973) #22	PLCD4 (ENSACCG00020000937) #23	ZNF142 (ENSACCG00020000894) #24	BCS1L (ENSACCG00020000859) #25	RNF25 (ENSACCG00020000835)	ENSACCG00020000814	ENSACCG00020000793	TTLL4 (ENSACCG00020000754)	PRKAG3 (ENSACCG00020000717)	CYP27A1 (ENSACCG00020000675) #26	WNT6 (ENSACCG00020000635)	WNT10A (ENSACCG00020000606)	CDK5R2 (ENSACCG00020000556)	ENSACCG00020000542	CRYBA2 (ENSACCG00020000511)	ENSACCG00020000487
Kakapo	MODERN SPECIES	22	IGFBP5 (ENSSHBG00005000565) #28	TNS1 (ENSSHBG00005000575) #27	ENSSHBG00005000580	ENSSHBG00005000582	ENSSHBG00005000584	ARPC2 (ENSSHBG00005000585)	AAMP (ENSSHBG00005011826)	ENSSHBG00005011860	TMBIM1 (ENSSHBG00005011879)	PNKD (ENSSHBG00005011916)	ENSSHBG00005011938	SLC11A1 (ENSSHBG00005011978)	CTDSP1 (ENSSHBG00005012010)	VIL1 (ENSSHBG00005012034)	USP37 (ENSSHBG00005012063) #21	CNOT9 (ENSSHBG00005012091) #22	PLCD4 (ENSSHBG00005012127) #23	ENSSHBG00005012179	ZNF142 (ENSSHBG00005012200) #24	BCS1L (ENSSHBG00005012242) #25	RNF25 (ENSSHBG00005012291)	ENSSHBG00005012316	ENSSHBG00005012338	TTLL4 (ENSSHBG00005012360)	PRKAG3 (ENSSHBG00005012380)	CYP27A1 (ENSSHBG00005012405) #26	WNT6 (ENSSHBG00005012420)	WNT10A (ENSSHBG00005012434)	CDK5R2 (ENSSHBG00005012446)	FEV (ENSSHBG00005012458)	CRYBA2 (ENSSHBG00005012469)
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
Great tit	MODERN SPECIES	27	IGFBP5 (ENSPMJG00000019760) #28	ENSPMJG00000019757	ENSPMJG00000019756	TNS1 (ENSPMJG00000019755) #27	RUFY4 (ENSPMJG00000019754)	ARPC2 (ENSPMJG00000019753)	ENSPMJG00000019752	ENSPMJG00000019751	TMBIM1 (ENSPMJG00000019750)	PNKD (ENSPMJG00000019749)	CATIP (ENSPMJG00000019747)	SLC11A1 (ENSPMJG00000019746)	CTDSP1 (ENSPMJG00000019745)	VIL1 (ENSPMJG00000019744)	USP37 (ENSPMJG00000019743) #21	CNOT9 (ENSPMJG00000019742) #22	PLCD4 (ENSPMJG00000019741) #23	ZNF142 (ENSPMJG00000019740) #24	BCS1L (ENSPMJG00000019739) #25	RNF25 (ENSPMJG00000019738)	ENSPMJG00000019737	ENSPMJG00000019736	TTLL4 (ENSPMJG00000019735)	PRKAG3 (ENSPMJG00000019734)	CYP27A1 (ENSPMJG00000019733) #26	WNT6 (ENSPMJG00000019732)	WNT10A (ENSPMJG00000019731)	CDK5R2 (ENSPMJG00000019730)	FEV (ENSPMJG00000019729)	CRYBA2 (ENSPMJG00000019728)	CFAP65 (ENSPMJG00000019726)
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
Flycatcher	MODERN SPECIES	26	ENSFALG00000003982	IGFBP2 (ENSFALG00000027525) #29	IGFBP5 (ENSFALG00000024773) #28	TNS1 (ENSFALG00000003985) #27	ENSFALG00000003992	ENSFALG00000028906	ARPC2 (ENSFALG00000003999)	AAMP (ENSFALG00000004015)	ENSFALG00000026825	TMBIM1 (ENSFALG00000026407)	PNKD (ENSFALG00000004028)	CATIP (ENSFALG00000004038)	SLC11A1 (ENSFALG00000004041)	VIL1 (ENSFALG00000004061)	USP37 (ENSFALG00000004072) #21	CNOT9 (ENSFALG00000024424) #22	ENSFALG00000004046	PLCD4 (ENSFALG00000004084) #23	ZNF142 (ENSFALG00000004099) #24	BCS1L (ENSFALG00000004106) #25	RNF25 (ENSFALG00000004112)	STK36 (ENSFALG00000004118)	TTLL4 (ENSFALG00000004135)	ENSFALG00000004143	ENSFALG00000004152 #26	WNT6 (ENSFALG00000024670)	WNT10A (ENSFALG00000004164)	ENSFALG00000028569	FEV (ENSFALG00000028150)	CRYBA2 (ENSFALG00000004167)	CFAP65 (ENSFALG00000004169)
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000165272.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142
Common canary	MODERN SPECIES	8	ENSSCAG00000012528 #28	ENSSCAG00000012569 #27	ENSSCAG00000012691 #27	RUFY4 (ENSSCAG00000012856)	ENSSCAG00000012859	ARPC2 (ENSSCAG00000012860)	AAMP (ENSSCAG00000012865)	ENSSCAG00000012871	TMBIM1 (ENSSCAG00000012874)	PNKD (ENSSCAG00000012879)	CATIP (ENSSCAG00000012930)	SLC11A1 (ENSSCAG00000012937)	CTDSP1 (ENSSCAG00000012952)	VIL1 (ENSSCAG00000013018)	USP37 (ENSSCAG00000013031) #21	CNOT9 (ENSSCAG00000013041) #22	PLCD4 (ENSSCAG00000013045) #23	ZNF142 (ENSSCAG00000013052) #24	BCS1L (ENSSCAG00000013059) #25	RNF25 (ENSSCAG00000013063)	STK36 (ENSSCAG00000013070)	TTLL4 (ENSSCAG00000013100)	PRKAG3 (ENSSCAG00000013178)	CYP27A1 (ENSSCAG00000013191) #26	WNT6 (ENSSCAG00000013214)	WNT10A (ENSSCAG00000013224)	ENSSCAG00000013228	ENSSCAG00000013230	CRYBA2 (ENSSCAG00000013238)	CFAP65 (ENSSCAG00000013251)	ENSSCAG00000013275
Zebra finch	MODERN SPECIES	29	ENSTGUG00000005107	IGFBP2 (ENSTGUG00000020693) #29	IGFBP5 (ENSTGUG00000025564) #28	TNS1 (ENSTGUG00000005126) #27	RUFY4 (ENSTGUG00000005168)	ENSTGUG00000023091	ARPC2 (ENSTGUG00000005170)	AAMP (ENSTGUG00000005212)	ENSTGUG00000005122	TMBIM1 (ENSTGUG00000005261)	PNKD (ENSTGUG00000005290)	SLC11A1 (ENSTGUG00000005297)	CTDSP1 (ENSTGUG00000021628)	VIL1 (ENSTGUG00000005367)	USP37 (ENSTGUG00000005444) #21	CNOT9 (ENSTGUG00000005493) #22	PLCD4 (ENSTGUG00000005509) #23	ZNF142 (ENSTGUG00000005552) #24	BCS1L (ENSTGUG00000005562) #25	RNF25 (ENSTGUG00000005569)	STK36 (ENSTGUG00000020080)	CYP27A1 (ENSTGUG00000005641) #26	TTLL4 (ENSTGUG00000005577)	PRKAG3 (ENSTGUG00000005596)	WNT6 (ENSTGUG00000005662)	WNT10A (ENSTGUG00000019647)	FEV (ENSTGUG00000027918)	CRYBA2 (ENSTGUG00000005681)	CFAP65 (ENSTGUG00000005692)	ENSTGUG00000005702	IHH (ENSTGUG00000027388)
Medium ground finch	MODERN SPECIES	1	IGFBP2 (ENSGFOG00000000391) #29	IGFBP5 (ENSGFOG00000000404) #28	TNS1 (ENSGFOG00000000444) #27	ENSGFOG00000000542	ENSGFOG00000000549	ARPC2 (ENSGFOG00000000561)	AAMP (ENSGFOG00000000584)	ENSGFOG00000000596	TMBIM1 (ENSGFOG00000000605)	PNKD (ENSGFOG00000000614)	CATIP (ENSGFOG00000000620)	SLC11A1 (ENSGFOG00000000632)	CTDSP1 (ENSGFOG00000000644)	VIL1 (ENSGFOG00000000774)	USP37 (ENSGFOG00000002319) #21	CNOT9 (ENSGFOG00000002368) #22	PLCD4 (ENSGFOG00000002408) #23	ZNF142 (ENSGFOG00000002473) #24	BCS1L (ENSGFOG00000002536) #25	RNF25 (ENSGFOG00000002561)	ENSGFOG00000002578	TTLL4 (ENSGFOG00000002599)	PRKAG3 (ENSGFOG00000002635)	CYP27A1 (ENSGFOG00000002744) #26	WNT6 (ENSGFOG00000003972)	WNT10A (ENSGFOG00000003984)	ENSGFOG00000003993	FEV (ENSGFOG00000004000)	CRYBA2 (ENSGFOG00000004005)	CFAP65 (ENSGFOG00000004022)	ENSGFOG00000004052
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000165272.a	ENSGT00940000161562	ENSGT00940000160306	ENSGT00430000031142
Anatidae	ANCESTRAL SPECIES	37														ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225 #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00940000161562	ENSGT00940000160306.c	ENSGT00430000031142	ENSGT00940000160059.a.b	ENSGT00940000159207
Pink-footed goose	MODERN SPECIES	25														VIL1 (ENSABRG00000022126)	USP37 (ENSABRG00000022136) #21	CNOT9 (ENSABRG00000022140) #22	PLCD4 (ENSABRG00000022142) #23	ZNF142 (ENSABRG00000022143) #24	BCS1L (ENSABRG00000022145) #25	RNF25 (ENSABRG00000022147)	STK36 (ENSABRG00000022150)	TTLL4 (ENSABRG00000022158)	PRKAG3 (ENSABRG00000022188)	CYP27A1 (ENSABRG00000022301) #26	WNT6 (ENSABRG00000022302)	WNT10A (ENSABRG00000022303)	FEV (ENSABRG00000022306)	CRYBA2 (ENSABRG00000022308)	CFAP65 (ENSABRG00000022312)	ENSABRG00000022313	IHH (ENSABRG00000022314)
Duck	MODERN SPECIES	25	ENSAPLG00000027181	NXPH2 (ENSAPLG00000001877)	SPOPL (ENSAPLG00000008966)	HNMT (ENSAPLG00000022720)	MAP3K2 (ENSAPLG00000012930)	PECR (ENSAPLG00000012862)	TMEM169 (ENSAPLG00000012858)	XRCC5 (ENSAPLG00000012767)	MARCHF4 (ENSAPLG00000020548)	SMARCAL1 (ENSAPLG00000009864)	ENSAPLG00000009836	ENSAPLG00000017994 #29	ENSAPLG00000009817 #29	TNS1 (ENSAPLG00000025012) #27	ARPC2 (ENSAPLG00000004251)	CNOT9 (ENSAPLG00000005817) #22	PLCD4 (ENSAPLG00000025810) #23	ZNF142 (ENSAPLG00000026417) #24	BCS1L (ENSAPLG00000005237) #25	RNF25 (ENSAPLG00000005028)	ENSAPLG00000020988	PRKAG3 (ENSAPLG00000025550)	CYP27A1 (ENSAPLG00000004381) #26	WNT10A (ENSAPLG00000016706)	ZNF385B (ENSAPLG00000003705)	SESTD1 (ENSAPLG00000002954)	ENSAPLG00000017075	ENSAPLG00000022774	ENSAPLG00000017682	ENSAPLG00000022613	ENSAPLG00000026953
Phasianidae	DUPLICATION
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225.o #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00940000161562	ENSGT00390000008812.a	ENSGT00940000165272.a	ENSGT00940000160306	ENSGT00430000031142
Japanese quail	MODERN SPECIES	25	IGFBP2 (ENSCJPG00005013070) #29	IGFBP5 (ENSCJPG00005013071) #28	TNS1 (ENSCJPG00005013082) #27	RUFY4 (ENSCJPG00005013083)	ENSCJPG00005013084	ENSCJPG00005013085	ARPC2 (ENSCJPG00005013086)	AAMP (ENSCJPG00005013087)	TMBIM1 (ENSCJPG00005013088)	PNKD (ENSCJPG00005013089)	CATIP (ENSCJPG00005013090)	SLC11A1 (ENSCJPG00005013091)	CTDSP1 (ENSCJPG00005013092)	VIL1 (ENSCJPG00005013096)	USP37 (ENSCJPG00005013097) #21	CNOT9 (ENSCJPG00005013098) #22	PLCD4 (ENSCJPG00005013099) #23	ZNF142 (ENSCJPG00005013100) #24	ENSCJPG00005013101	BCS1L (ENSCJPG00005013102) #25	RNF25 (ENSCJPG00005013103)	STK36 (ENSCJPG00005013104)	TTLL4 (ENSCJPG00005013105)	PRKAG3 (ENSCJPG00005013106)	CYP27A1 (ENSCJPG00005013107) #26	WNT6 (ENSCJPG00005013108)	WNT10A (ENSCJPG00005013109)	CDK5R2 (ENSCJPG00005013110)	ENSCJPG00005013111	CRYBA2 (ENSCJPG00005013112)	CFAP65 (ENSCJPG00005013114)
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT00940000158542 #29	ENSGT00940000155890 #28	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a	ENSGT00390000016794.b	ENSGT00940000153648.a	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000160799	ENSGT01040000240451.a.a	ENSGT00940000160544	ENSGT00940000158091 #21	ENSGT00390000001225.o #22	ENSGT00940000156180 #23	ENSGT00940000163074 #24	ENSGT00390000005415 #25	ENSGT00390000001557	ENSGT00940000158375	ENSGT00940000157916.a	ENSGT00950000183019.f.b.b	ENSGT00950000182905.a.a.a.a.b #26	ENSGT00940000159281	ENSGT00940000160299	ENSGT00940000161562	ENSGT00390000008812.a	ENSGT00940000160306	ENSGT00430000031142	ENSGT00940000160059.a.b
Chicken	MODERN SPECIES	36	TNS1 (ENSGALG00010019050) #27	RUFY4 (ENSGALG00010019265)	ENSGALG00010019254	CXCR1 (ENSGALG00010019250)	ARPC2 (ENSGALG00010019233)	AAMP (ENSGALG00010019223)	ENSGALG00010019194	PNKD (ENSGALG00010019184)	CATIP (ENSGALG00010019164)	SLC11A1 (ENSGALG00010021140)	ENSGALG00010022204	TMBIM1 (ENSGALG00010019127)	CTDSP1 (ENSGALG00010018986)	VIL1 (ENSGALG00010019011)	USP37 (ENSGALG00010021193) #21	CNOT9 (ENSGALG00010021663) #22	PLCD4 (ENSGALG00010021634) #23	ZNF142 (ENSGALG00010021626) #24	BCS1L (ENSGALG00010021612) #25	RNF25 (ENSGALG00010021588)	STK36 (ENSGALG00010021582)	TTLL4 (ENSGALG00010021574)	PRKAG3 (ENSGALG00010021564)	CYP27A1 (ENSGALG00010021541) #26	WNT6 (ENSGALG00010021142)	WNT10A (ENSGALG00010021151)	FEV (ENSGALG00010021226)	CDK5R2 (ENSGALG00010021205)	CRYBA2 (ENSGALG00010021198)	CFAP65 (ENSGALG00010018110)	ENSGALG00010018369
Turkey	MODERN SPECIES	27	ENSMGAG00000022553	ENSMGAG00000003525	ENSMGAG00000022755	ENSMGAG00000011371	ENSMGAG00000011382	ENSMGAG00000021851	ENSMGAG00000011406	ENSMGAG00000011393 #26	ENSMGAG00000011420	STK36 (ENSMGAG00000011353)	BCS1L (ENSMGAG00000011442) #25	RNF25 (ENSMGAG00000011433)	ENSMGAG00000020353	ENSMGAG00000011452 #23	ENSMGAG00000011447 #24	ENSMGAG00000011461 #22	ENSMGAG00000021644 #22	ENSMGAG00000011465 #21	ENSMGAG00000011483	ENSMGAG00000011495	SLC11A1 (ENSMGAG00000011500)	PNKD (ENSMGAG00000011524)	TMBIM1 (ENSMGAG00000011539)	ENSMGAG00000011572	ENSMGAG00000011555	ENSMGAG00000015922	ENSMGAG00000011581	ENSMGAG00000011587 #27	ENSMGAG00000021023 #28	ENSMGAG00000011630 #29	ENSMGAG00000011655
Phasianidae	ANCESTRAL SPECIES																	ENSGT00390000001225.p #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00390000001225.p #22
Turkey	MODERN SPECIES	27	ENSMGAG00000003525	ENSMGAG00000022755	ENSMGAG00000011371	ENSMGAG00000011382	ENSMGAG00000021851	ENSMGAG00000011406	ENSMGAG00000011393 #26	ENSMGAG00000011420	STK36 (ENSMGAG00000011353)	BCS1L (ENSMGAG00000011442) #25	RNF25 (ENSMGAG00000011433)	ENSMGAG00000020353	ENSMGAG00000011452 #23	ENSMGAG00000011447 #24	ENSMGAG00000011461 #22	ENSMGAG00000021644 #22	ENSMGAG00000011465 #21	ENSMGAG00000011483	ENSMGAG00000011495	SLC11A1 (ENSMGAG00000011500)	PNKD (ENSMGAG00000011524)	TMBIM1 (ENSMGAG00000011539)	ENSMGAG00000011572	ENSMGAG00000011555	ENSMGAG00000015922	ENSMGAG00000011581	ENSMGAG00000011587 #27	ENSMGAG00000021023 #28	ENSMGAG00000011630 #29	ENSMGAG00000011655	SMARCAL1 (ENSMGAG00000011658)
Australian saltwater crocodile	MODERN SPECIES	66	MARCHF4 (ENSCPRG00005000224)	SMARCAL1 (ENSCPRG00005000158)	ENSCPRG00005018977	IGFBP2 (ENSCPRG00005018976) #29	IGFBP5 (ENSCPRG00005018975) #28	TNS1 (ENSCPRG00005018944) #27	ENSCPRG00005018924	ARPC2 (ENSCPRG00005018922)	AAMP (ENSCPRG00005018921)	ENSCPRG00005018920	TMBIM1 (ENSCPRG00005018919)	PNKD (ENSCPRG00005018918)	SLC11A1 (ENSCPRG00005018916)	VIL1 (ENSCPRG00005018914)	USP37 (ENSCPRG00005018913) #21	CNOT9 (ENSCPRG00005018911) #22	ZNF142 (ENSCPRG00005018905) #24	BCS1L (ENSCPRG00005018900) #25	CYP27A1 (ENSCPRG00005018899) #26	RNF25 (ENSCPRG00005018898)	STK36 (ENSCPRG00005018897)	TTLL4 (ENSCPRG00005018896)	NHEJ1 (ENSCPRG00005018895)	ENSCPRG00005018894	TMEM198 (ENSCPRG00005018893)	OBSL1 (ENSCPRG00005018892)	INHA (ENSCPRG00005018891)	ENSCPRG00005018890	STK11IP (ENSCPRG00005018889)	SLC4A3 (ENSCPRG00005018888) #31	ENSCPRG00005018881