Glires	ANCESTRAL SPECIES	3	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720 #11	ENSGT00940000159091 #12	ENSGT00990000209473	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720 #11	ENSGT00940000159091 #12	ENSGT00990000209473	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00950000185094	ENSGT00940000154376.b.f ##24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000161386 #7	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720 #11	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35	ENSGT00940000156584 #37
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720 #11	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35	ENSGT00940000156584 #37
Muroidea	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720 #11	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35	ENSGT00940000156584 #37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000161386 #7	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720 #11	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35	ENSGT00940000156584 #37
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000161386 #7	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720 #11	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h.jb #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35	ENSGT00940000156584 #37
Mus	ANCESTRAL SPECIES	2	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720 #11	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00860000136060	ENSGT00950000183070.a.b.h.jb #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35	ENSGT00940000156584 #37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720 #11	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00860000136060	ENSGT00950000183070.a.b.h.jb #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35	ENSGT00940000156584 #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720 #11	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00860000136060	ENSGT00950000183070.a.b.h.jb #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35	ENSGT00940000156584 #37
Mouse	MODERN SPECIES	2	Hoxb9 (ENSMUSG00000020875) #7	Hoxb13 (ENSMUSG00000049604) #8	Ttll6 (ENSMUSG00000038756) #9	Calcoco2 (ENSMUSG00000006056) #10	Atp5g1 (ENSMUSG00000006057) #11	Ube2z (ENSMUSG00000014349) #12	Snf8 (ENSMUSG00000006058) #13	Gip (ENSMUSG00000014351) #14	Igf2bp1 (ENSMUSG00000013415) #15	B4galnt2 (ENSMUSG00000013418) #16	Gngt2 (ENSMUSG00000038811) #17	Abi3 (ENSMUSG00000018381) #18	Phospho1 (ENSMUSG00000050860) #19	Zfp652 (ENSMUSG00000075595) #20	Phb (ENSMUSG00000038845) #21	Ngfr (ENSMUSG00000000120) #22	Nxph3 (ENSMUSG00000046719) #23	Spop (ENSMUSG00000057522) #24	Slc35b1 (ENSMUSG00000020873) #25	Fam117a (ENSMUSG00000038893) #26	Kat7 (ENSMUSG00000038909) #27	Tac4 (ENSMUSG00000020872) #28	Dlx4 (ENSMUSG00000020871) #29	Dlx3 (ENSMUSG00000001510) #30	Itga3 (ENSMUSG00000001507) #31	Pdk2 (ENSMUSG00000038967) #32	Samd14 (ENSMUSG00000047181) #33	Ppp1r9b (ENSMUSG00000038976) #34	H1f9 (ENSMUSG00000038994) #35	Sgca (ENSMUSG00000001508) #36	Col1a1 (ENSMUSG00000001506) #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720 #11	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00860000136060	ENSGT00950000183070.a.b.h.jb #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35	ENSGT00940000156584 #37
spretus	MODERN SPECIES	2	Hoxb13 (MGP_SPRETEiJ_G0017869) #8	Ttll6 (MGP_SPRETEiJ_G0017868) #9	MGP_SPRETEiJ_G0017867 #10	Atp5g1 (MGP_SPRETEiJ_G0017866) #11	Ube2z (MGP_SPRETEiJ_G0017865) #12	Snf8 (MGP_SPRETEiJ_G0017864) #13	Gip (MGP_SPRETEiJ_G0017863) #14	Igf2bp1 (MGP_SPRETEiJ_G0017862) #15	B4galnt2 (MGP_SPRETEiJ_G0017861) #16	Gngt2 (MGP_SPRETEiJ_G0017860) #17	MGP_SPRETEiJ_G0017859 #18	Phospho1 (MGP_SPRETEiJ_G0017858) #19	MGP_SPRETEiJ_G0017857	Zfp652 (MGP_SPRETEiJ_G0017856) #20	Phb (MGP_SPRETEiJ_G0017855) #21	Ngfr (MGP_SPRETEiJ_G0017854) #22	Nxph3 (MGP_SPRETEiJ_G0017853) #23	MGP_SPRETEiJ_G0017852 #24	Slc35b1 (MGP_SPRETEiJ_G0017851) #25	Fam117a (MGP_SPRETEiJ_G0017850) #26	Kat7 (MGP_SPRETEiJ_G0017849) #27	Tac4 (MGP_SPRETEiJ_G0017848) #28	Dlx4 (MGP_SPRETEiJ_G0017847) #29	Dlx3 (MGP_SPRETEiJ_G0017846) #30	Itga3 (MGP_SPRETEiJ_G0017845) #31	Pdk2 (MGP_SPRETEiJ_G0017844) #32	Samd14 (MGP_SPRETEiJ_G0017843) #33	Ppp1r9b (MGP_SPRETEiJ_G0017842) #34	H1f9 (MGP_SPRETEiJ_G0017841) #35	Sgca (MGP_SPRETEiJ_G0017840) #36	Col1a1 (MGP_SPRETEiJ_G0017839) #37
Steppe mouse	MODERN SPECIES	3291	Ttll6 (ENSMSIG00000018881) #9	ENSMSIG00000018956 #10	Atp5g1 (ENSMSIG00000018986) #11	Ube2z (ENSMSIG00000019038) #12	Snf8 (ENSMSIG00000019072) #13	Gip (ENSMSIG00000019162) #14	Igf2bp1 (ENSMSIG00000019193) #15	B4galnt2 (ENSMSIG00000019230) #16	Gngt2 (ENSMSIG00000019268) #17	Abi3 (ENSMSIG00000019324) #18	Phospho1 (ENSMSIG00000019336) #19	Zfp652 (ENSMSIG00000019372) #20	ENSMSIG00000019385	ENSMSIG00000019388	ENSMSIG00000019393 #21	Ngfr (ENSMSIG00000019412) #22	Nxph3 (ENSMSIG00000019422) #23	Spop (ENSMSIG00000019434) #24	Slc35b1 (ENSMSIG00000019515) #25	Fam117a (ENSMSIG00000019538) #26	Kat7 (ENSMSIG00000019556) #27	Tac4 (ENSMSIG00000019727) #28	Dlx4 (ENSMSIG00000019740) #29	Dlx3 (ENSMSIG00000019752) #30	Itga3 (ENSMSIG00000019761) #31	Pdk2 (ENSMSIG00000019841) #32	Samd14 (ENSMSIG00000019863) #33	Ppp1r9b (ENSMSIG00000019879) #34	Sgca (ENSMSIG00000019913) #36	H1f9 (ENSMSIG00000019945) #35	Col1a1 (ENSMSIG00000019958) #37
Ryukyu mouse	MODERN SPECIES	2	Hoxb9 (MGP_CAROLIEiJ_G0017024) #7	Hoxb13 (MGP_CAROLIEiJ_G0017023) #8	Ttll6 (MGP_CAROLIEiJ_G0017022) #9	MGP_CAROLIEiJ_G0017021 #10	MGP_CAROLIEiJ_G0017020 #11	MGP_CAROLIEiJ_G0017019 #12	Snf8 (MGP_CAROLIEiJ_G0017018) #13	Gip (MGP_CAROLIEiJ_G0017017) #14	Igf2bp1 (MGP_CAROLIEiJ_G0017016) #15	B4galnt2 (MGP_CAROLIEiJ_G0017015) #16	Gngt2 (MGP_CAROLIEiJ_G0017014) #17	Abi3 (MGP_CAROLIEiJ_G0017013) #18	Phospho1 (MGP_CAROLIEiJ_G0017012) #19	MGP_CAROLIEiJ_G0017011 #20	MGP_CAROLIEiJ_G0017010 #21	Ngfr (MGP_CAROLIEiJ_G0017009) #22	Nxph3 (MGP_CAROLIEiJ_G0017008) #23	MGP_CAROLIEiJ_G0017007 #24	Slc35b1 (MGP_CAROLIEiJ_G0017006) #25	Fam117a (MGP_CAROLIEiJ_G0017005) #26	Kat7 (MGP_CAROLIEiJ_G0017004) #27	Tac4 (MGP_CAROLIEiJ_G0017003) #28	MGP_CAROLIEiJ_G0017002 #29	Dlx3 (MGP_CAROLIEiJ_G0017001) #30	Itga3 (MGP_CAROLIEiJ_G0017000) #31	Pdk2 (MGP_CAROLIEiJ_G0016999) #32	Samd14 (MGP_CAROLIEiJ_G0016998) #33	Ppp1r9b (MGP_CAROLIEiJ_G0016997) #34	H1f9 (MGP_CAROLIEiJ_G0016996) #35	Sgca (MGP_CAROLIEiJ_G0016995) #36	Col1a1 (MGP_CAROLIEiJ_G0016994) #37
Shrew mouse	MODERN SPECIES	5	Hoxb13 (MGP_PahariEiJ_G0018153) #8	Ttll6 (MGP_PahariEiJ_G0018152) #9	MGP_PahariEiJ_G0018151 #10	Atp5g1 (MGP_PahariEiJ_G0018150) #11	Ube2z (MGP_PahariEiJ_G0018149) #12	Snf8 (MGP_PahariEiJ_G0018148) #13	Gip (MGP_PahariEiJ_G0018147) #14	MGP_PahariEiJ_G0018146 #15	B4galnt2 (MGP_PahariEiJ_G0018145) #16	Gngt2 (MGP_PahariEiJ_G0018144) #17	Abi3 (MGP_PahariEiJ_G0018143) #18	Phospho1 (MGP_PahariEiJ_G0018142) #19	MGP_PahariEiJ_G0018141	Zfp652 (MGP_PahariEiJ_G0018140) #20	MGP_PahariEiJ_G0018139 #21	Ngfr (MGP_PahariEiJ_G0018138) #22	Nxph3 (MGP_PahariEiJ_G0018137) #23	Spop (MGP_PahariEiJ_G0018136) #24	Slc35b1 (MGP_PahariEiJ_G0018135) #25	Fam117a (MGP_PahariEiJ_G0018134) #26	Kat7 (MGP_PahariEiJ_G0018133) #27	MGP_PahariEiJ_G0018132 #28	Dlx4 (MGP_PahariEiJ_G0018131) #29	Dlx3 (MGP_PahariEiJ_G0018130) #30	Itga3 (MGP_PahariEiJ_G0018129) #31	Pdk2 (MGP_PahariEiJ_G0018128) #32	Samd14 (MGP_PahariEiJ_G0018127) #33	Ppp1r9b (MGP_PahariEiJ_G0018126) #34	MGP_PahariEiJ_G0018125 #35	Sgca (MGP_PahariEiJ_G0018124) #36	Col1a1 (MGP_PahariEiJ_G0018123) #37
Rat	MODERN SPECIES	1	Hoxb8 (ENSRNOG00000007585)	Hoxb9 (ENSRNOG00000007573) #7	Hoxb13 (ENSRNOG00000007491) #8	Ttll6 (ENSRNOG00000004939) #9	ENSRNOG00000066153 #10	Ube2z (ENSRNOG00000006868) #12	Snf8 (ENSRNOG00000006500) #13	Gip (ENSRNOG00000006306) #14	Igf2bp1 (ENSRNOG00000006122) #15	B4galnt2 (ENSRNOG00000067203) #16	Abi3 (ENSRNOG00000005575) #18	Phospho1 (ENSRNOG00000005569) #19	ENSRNOG00000068958	Zfp652 (ENSRNOG00000017001) #20	Phb1 (ENSRNOG00000046799) #21	Ngfr (ENSRNOG00000005392) #22	Nxph3 (ENSRNOG00000005185) #23	Spop (ENSRNOG00000004686) #24	Slc35b1 (ENSRNOG00000004510) #25	Fam117a (ENSRNOG00000004417) #26	AABR07030375.1 (ENSRNOG00000022375)	Kat7 (ENSRNOG00000022664) #27	Tac4 (ENSRNOG00000004404) #28	Dlx4 (ENSRNOG00000004399) #29	Dlx3 (ENSRNOG00000004278) #30	Itga3 (ENSRNOG00000004276) #31	Pdk2 (ENSRNOG00000004172) #32	Samd14 (ENSRNOG00000004155) #33	Ppp1r9b (ENSRNOG00000052113) #34	Hils1 (ENSRNOG00000024041) #35	Sgca (ENSRNOG00000003998) #36
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720.ab #11	ENSGT00940000159720.`b.a.a #11	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #35	ENSGT00390000005672.a.a #36	ENSGT00940000156584 #37
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720.`b.b #11	ENSGT00940000159720.`b.a.a #11	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000163054	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #35	ENSGT00390000005672.a.a #36	ENSGT00940000156584 #37
Golden Hamster	MODERN SPECIES	674	Hoxb7 (ENSMAUG00000021297)	Hoxb8 (ENSMAUG00000012636)	Hoxb9 (ENSMAUG00000017720) #7	Hoxb13 (ENSMAUG00000008407) #8	Ttll6 (ENSMAUG00000020973) #9	ENSMAUG00000021751 #11	Ube2z (ENSMAUG00000007792) #12	Snf8 (ENSMAUG00000001857) #13	Gip (ENSMAUG00000009238) #14	B4galnt2 (ENSMAUG00000007916) #16	Gngt2 (ENSMAUG00000019144) #17	Abi3 (ENSMAUG00000021085) #18	Phospho1 (ENSMAUG00000012074) #19	Zfp652 (ENSMAUG00000009337) #20	Phb (ENSMAUG00000013028) #21	Ngfr (ENSMAUG00000019765) #22	Nxph3 (ENSMAUG00000016785) #23	ENSMAUG00000008827	Spop (ENSMAUG00000001558) #24	Slc35b1 (ENSMAUG00000001422) #25	Fam117a (ENSMAUG00000018942) #26	ENSMAUG00000018213	Tac4 (ENSMAUG00000006918) #28	Dlx3 (ENSMAUG00000011673) #30	Itga3 (ENSMAUG00000013250) #31	Pdk2 (ENSMAUG00000020321) #32	Samd14 (ENSMAUG00000010153) #33	Ppp1r9b (ENSMAUG00000013974) #34	Sgca (ENSMAUG00000009888) #36	Col1a1 (ENSMAUG00000019272) #37	Xylt2 (ENSMAUG00000020996)
Chinese hamster chok1gshd	MODERN SPECIES	33	Hoxb13 (ENSCGRG00001015060) #8	Ttll6 (ENSCGRG00001018398) #9	ENSCGRG00001011435 #10	ENSCGRG00001010560	ENSCGRG00001022606 #11	Ube2z (ENSCGRG00001019150) #12	Snf8 (ENSCGRG00001000737) #13	Gip (ENSCGRG00001021533) #14	ENSCGRG00001000282 #15	B4galnt2 (ENSCGRG00001014272) #16	Gngt2 (ENSCGRG00001021265) #17	Abi3 (ENSCGRG00001013274) #18	Phospho1 (ENSCGRG00001009639) #19	Zfp652 (ENSCGRG00001018513) #20	Phb (ENSCGRG00001008513) #21	Ngfr (ENSCGRG00001022139) #22	Nxph3 (ENSCGRG00001014680) #23	Spop (ENSCGRG00001024062) #24	Slc35b1 (ENSCGRG00001006734) #25	Fam117a (ENSCGRG00001009494) #26	ENSCGRG00001005107	Tac4 (ENSCGRG00001001077) #28	Dlx4 (ENSCGRG00001019843) #29	Dlx3 (ENSCGRG00001022154) #30	Itga3 (ENSCGRG00001021353) #31	Pdk2 (ENSCGRG00001014853) #32	Samd14 (ENSCGRG00001002338) #33	Ppp1r9b (ENSCGRG00001012352) #34	H1f9 (ENSCGRG00001005718) #35	Sgca (ENSCGRG00001019141) #36	Col1a1 (ENSCGRG00001020668) #37
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720.ab #11	ENSGT00940000159720.`b.a.a #11	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #35	ENSGT00390000005672.a.a #36	ENSGT00940000156584 #37
Prairie vole	MODERN SPECIES	15	Wipi1 (ENSMOCG00000019305)	Arsg (ENSMOCG00000017412)	Slc16a6 (ENSMOCG00000017493)	Amz2 (ENSMOCG00000011962)	Gna13 (ENSMOCG00000018065)	Rgs9 (ENSMOCG00000009988)	ENSMOCG00000002639	Axin2 (ENSMOCG00000017644)	Igf2bp1 (ENSMOCG00000010232) #15	B4galnt2 (ENSMOCG00000006515) #16	Gngt2 (ENSMOCG00000009807) #17	Abi3 (ENSMOCG00000006282) #18	Phospho1 (ENSMOCG00000011323) #19	Zfp652 (ENSMOCG00000017054) #20	ENSMOCG00000013553 #21	Ngfr (ENSMOCG00000011552) #22	Nxph3 (ENSMOCG00000019725) #23	Spop (ENSMOCG00000017955) #24	Slc35b1 (ENSMOCG00000006471) #25	Fam117a (ENSMOCG00000004559) #26	Kat7 (ENSMOCG00000012946) #27	Tac4 (ENSMOCG00000015203) #28	Dlx4 (ENSMOCG00000013049) #29	Dlx3 (ENSMOCG00000019860) #30	Itga3 (ENSMOCG00000007772) #31	Pdk2 (ENSMOCG00000019896) #32	Samd14 (ENSMOCG00000012339) #33	Ppp1r9b (ENSMOCG00000004637) #34	Sgca (ENSMOCG00000019942) #36	Col1a1 (ENSMOCG00000022060) #37	Tmem92 (ENSMOCG00000013915)
Northern American deer mouse	MODERN SPECIES	21	Hoxb13 (ENSPEMG00000021511) #8	Ttll6 (ENSPEMG00000021918) #9	ENSPEMG00000025676 #10	ENSPEMG00000028729 #10	Atp5g1 (ENSPEMG00000020590) #11	Ube2z (ENSPEMG00000020953) #12	Snf8 (ENSPEMG00000022229) #13	Gip (ENSPEMG00000021184) #14	Igf2bp1 (ENSPEMG00000021974) #15	B4galnt2 (ENSPEMG00000020717) #16	Gngt2 (ENSPEMG00000027491) #17	Abi3 (ENSPEMG00000014242) #18	Phospho1 (ENSPEMG00000026539) #19	Zfp652 (ENSPEMG00000020862) #20	Phb (ENSPEMG00000021310) #21	Ngfr (ENSPEMG00000020336) #22	Nxph3 (ENSPEMG00000027912) #23	Spop (ENSPEMG00000012191) #24	ENSPEMG00000026857	ENSPEMG00000021039 #25	Fam117a (ENSPEMG00000020788) #26	Kat7 (ENSPEMG00000020984) #27	Tac4 (ENSPEMG00000014516) #28	Dlx4 (ENSPEMG00000004265) #29	Dlx3 (ENSPEMG00000028715) #30	Itga3 (ENSPEMG00000023588) #31	Pdk2 (ENSPEMG00000020540) #32	Samd14 (ENSPEMG00000020781) #33	Ppp1r9b (ENSPEMG00000020691) #34	ENSPEMG00000024353 #35	Sgca (ENSPEMG00000021738) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Hoxb9 (ENSNGAG00000010851) #7	Hoxb13 (ENSNGAG00000011053) #8	Ttll6 (ENSNGAG00000011763) #9	ENSNGAG00000023585 #10	ENSNGAG00000024212 #11	Ube2z (ENSNGAG00000024296) #12	Snf8 (ENSNGAG00000001366) #13	Gip (ENSNGAG00000020354) #14	Igf2bp1 (ENSNGAG00000015679) #15	B4galnt2 (ENSNGAG00000016426) #16	Gngt2 (ENSNGAG00000001081) #17	Abi3 (ENSNGAG00000003386) #18	Phospho1 (ENSNGAG00000008704) #19	Zfp652 (ENSNGAG00000010366) #20	Phb (ENSNGAG00000012333) #21	Ngfr (ENSNGAG00000016145) #22	Nxph3 (ENSNGAG00000021464) #23	ENSNGAG00000011377 #24	Slc35b1 (ENSNGAG00000017143) #25	Fam117a (ENSNGAG00000018414) #26	Kat7 (ENSNGAG00000021224) #27	Tac4 (ENSNGAG00000016792) #28	Dlx4 (ENSNGAG00000017759) #29	Dlx3 (ENSNGAG00000022310) #30	Itga3 (ENSNGAG00000001240) #31	Pdk2 (ENSNGAG00000022231) #32	Samd14 (ENSNGAG00000024291) #33	Ppp1r9b (ENSNGAG00000006328) #34	ENSNGAG00000014768 #36	Col1a1 (ENSNGAG00000018018) #37	Xylt2 (ENSNGAG00000022851)
Lesser Egyptian jerboa	MODERN SPECIES	56	Hoxb13 (ENSJJAG00000010401) #8	Ttll6 (ENSJJAG00000010253) #9	ENSJJAG00000010301 #11	ENSJJAG00000003530 #12	Snf8 (ENSJJAG00000006012) #13	Gip (ENSJJAG00000010688) #14	Igf2bp1 (ENSJJAG00000002687) #15	B4galnt2 (ENSJJAG00000006322) #16	ENSJJAG00000002566	Gngt2 (ENSJJAG00000002044) #17	Abi3 (ENSJJAG00000002821) #18	Phospho1 (ENSJJAG00000010499) #19	Zfp652 (ENSJJAG00000010496) #20	ENSJJAG00000006327	ENSJJAG00000009251 #21	Ngfr (ENSJJAG00000003615) #22	Nxph3 (ENSJJAG00000002621) #23	Spop (ENSJJAG00000004272) #24	Slc35b1 (ENSJJAG00000003707) #25	Fam117a (ENSJJAG00000008152) #26	Kat7 (ENSJJAG00000010625) #27	Dlx4 (ENSJJAG00000008185) #29	Dlx3 (ENSJJAG00000002767) #30	Itga3 (ENSJJAG00000010876) #31	Pdk2 (ENSJJAG00000009652) #32	Samd14 (ENSJJAG00000004713) #33	Ppp1r9b (ENSJJAG00000008310) #34	Sgca (ENSJJAG00000006156) #36	Col1a1 (ENSJJAG00000011070) #37	Xylt2 (ENSJJAG00000010800)	Mrpl27 (ENSJJAG00000006271)
Kangaroo rat	MODERN SPECIES	326	Hoxb7 (ENSDORG00000007905)	Hoxb8 (ENSDORG00000007906)	Hoxb9 (ENSDORG00000027423) #7	Hoxb13 (ENSDORG00000008369) #8	ENSDORG00000024585 #10	ENSDORG00000028385	ENSDORG00000008511	Ube2z (ENSDORG00000009258) #12	Snf8 (ENSDORG00000009262) #13	Igf2bp1 (ENSDORG00000014371) #15	Gngt2 (ENSDORG00000023588) #17	Abi3 (ENSDORG00000002245) #18	Phospho1 (ENSDORG00000002249) #19	Zfp652 (ENSDORG00000028287) #20	ENSDORG00000004455 #21	Ngfr (ENSDORG00000004457) #22	Nxph3 (ENSDORG00000001674) #23	Spop (ENSDORG00000001680) #24	Slc35b1 (ENSDORG00000014742) #25	Fam117a (ENSDORG00000014743) #26	Kat7 (ENSDORG00000014746) #27	Dlx4 (ENSDORG00000007200) #29	Itga3 (ENSDORG00000013491) #31	Pdk2 (ENSDORG00000013494) #32	Samd14 (ENSDORG00000013495) #33	ENSDORG00000013497 #34	Sgca (ENSDORG00000013499) #36	ENSDORG00000013502	Xylt2 (ENSDORG00000001024)	Mrpl27 (ENSDORG00000001026)	Lrrc59 (ENSDORG00000030092)
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000154298.a.b	ENSGT00940000159091 #12	ENSGT00990000209473	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.a ##24	ENSGT00950000185094	ENSGT00940000154376.b.f ##24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000154298.a.b	ENSGT00940000159091 #12	ENSGT00990000209473	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b.f ##24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000161386 #7	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000154298.a.b	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b.f ##24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744.g #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000159720 #11	ENSGT00940000154298.a.b	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.f ##24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744.g #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35	ENSGT00940000156584 #37
Arctic ground squirrel	MODERN SPECIES	46	HOXB9 (ENSUPAG00010006305) #7	HOXB13 (ENSUPAG00010006301) #8	TTLL6 (ENSUPAG00010006267) #9	CALCOCO2 (ENSUPAG00010006243) #10	ENSUPAG00010006195 #11	UBE2Z (ENSUPAG00010006178) #12	SNF8 (ENSUPAG00010006148) #13	GIP (ENSUPAG00010006136) #14	IGF2BP1 (ENSUPAG00010006100) #15	B4GALNT2 (ENSUPAG00010006086) #16	GNGT2 (ENSUPAG00010006078) #17	ABI3 (ENSUPAG00010006071) #18	PHOSPHO1 (ENSUPAG00010006065) #19	ZNF652 (ENSUPAG00010006043) #20	PHB1 (ENSUPAG00010006031) #21	NGFR (ENSUPAG00010006025) #22	NXPH3 (ENSUPAG00010006022) #23	SPOP (ENSUPAG00010005991) ##24	SLC35B1 (ENSUPAG00010005981) #25	ENSUPAG00010005976 #26	KAT7 (ENSUPAG00010005813) #27	ENSUPAG00010005806 #28	DLX4 (ENSUPAG00010005802) #29	DLX3 (ENSUPAG00010005796) #30	ITGA3 (ENSUPAG00010005752) #31	PDK2 (ENSUPAG00010005730) #32	SAMD14 (ENSUPAG00010005699) #33	PPP1R9B (ENSUPAG00010005692) #34	ENSUPAG00010005686 #35	SGCA (ENSUPAG00010005661) #36	COL1A1 (ENSUPAG00010005604) #37
Squirrel	MODERN SPECIES	90	HOXB13 (ENSSTOG00000014942) #8	ENSSTOG00000025444	TTLL6 (ENSSTOG00000006016) #9	ENSSTOG00000013395 #10	ATP5MC1 (ENSSTOG00000013404)	UBE2Z (ENSSTOG00000000796) #12	SNF8 (ENSSTOG00000004023) #13	GIP (ENSSTOG00000004043) #14	IGF2BP1 (ENSSTOG00000010643) #15	B4GALNT2 (ENSSTOG00000007604) #16	GNGT2 (ENSSTOG00000007644) #17	ABI3 (ENSSTOG00000020017) #18	PHOSPHO1 (ENSSTOG00000007651) #19	ZNF652 (ENSSTOG00000011303) #20	ENSSTOG00000019929 #21	NGFR (ENSSTOG00000007836) #22	NXPH3 (ENSSTOG00000023834) #23	SPOP (ENSSTOG00000007851) ##24	SLC35B1 (ENSSTOG00000007868) #25	FAM117A (ENSSTOG00000007894) #26	KAT7 (ENSSTOG00000021252) #27	ENSSTOG00000007934 #28	DLX4 (ENSSTOG00000026218) #29	DLX3 (ENSSTOG00000010314) #30	ITGA3 (ENSSTOG00000014843) #31	PDK2 (ENSSTOG00000014856) #32	SAMD14 (ENSSTOG00000014861) #33	ENSSTOG00000022256 #34	ENSSTOG00000024093 #35	SGCA (ENSSTOG00000024920) #36	COL1A1 (ENSSTOG00000001973) #37
Alpin marmot	MODERN SPECIES	42	HOXB7 (ENSMMMG00000001087)	HOXB13 (ENSMMMG00000001064) #8	TTLL6 (ENSMMMG00000001013) #9	ENSMMMG00000000759 #10	ATP5MC1 (ENSMMMG00000000731)	UBE2Z (ENSMMMG00000000717) #12	SNF8 (ENSMMMG00000000680) #13	GIP (ENSMMMG00000000652) #14	IGF2BP1 (ENSMMMG00000000613) #15	B4GALNT2 (ENSMMMG00000000569) #16	GNGT2 (ENSMMMG00000000525) #17	ABI3 (ENSMMMG00000000452) #18	PHOSPHO1 (ENSMMMG00000000434) #19	ZNF652 (ENSMMMG00000000403) #20	PHB1 (ENSMMMG00000000385) #21	NGFR (ENSMMMG00000000369) #22	NXPH3 (ENSMMMG00000000359) #23	ENSMMMG00000000355	ENSMMMG00000000303 ##24	SLC35B1 (ENSMMMG00000000273) #25	FAM117A (ENSMMMG00000000258) #26	ENSMMMG00000000100 #27	DLX4 (ENSMMMG00000022762) #29	DLX3 (ENSMMMG00000022760) #30	ITGA3 (ENSMMMG00000022740) #31	PDK2 (ENSMMMG00000022729) #32	SAMD14 (ENSMMMG00000022727) #33	PPP1R9B (ENSMMMG00000022710) #34	SGCA (ENSMMMG00000022707) #36	ENSMMMG00000022701 #35	COL1A1 (ENSMMMG00000022693) #37
Eurasian red squirrel	MODERN SPECIES	12	HOXB13 (ENSSVLG00005019820) #8	TTLL6 (ENSSVLG00005020005) #9	CALCOCO2 (ENSSVLG00005020296) #10	ATP5MC1 (ENSSVLG00005020344)	UBE2Z (ENSSVLG00005020428) #12	ENSSVLG00005020450	SNF8 (ENSSVLG00005020472) #13	GIP (ENSSVLG00005020522) #14	IGF2BP1 (ENSSVLG00005020596) #15	B4GALNT2 (ENSSVLG00005020850) #16	GNGT2 (ENSSVLG00005021063) #17	ABI3 (ENSSVLG00005021097) #18	ENSSVLG00005021191 #19	ZNF652 (ENSSVLG00005021244) #20	PHB1 (ENSSVLG00005021310) #21	NGFR (ENSSVLG00005021364) #22	NXPH3 (ENSSVLG00005021450) #23	SPOP (ENSSVLG00005021469) ##24	SLC35B1 (ENSSVLG00005021505) #25	ENSSVLG00005021540 #26	KAT7 (ENSSVLG00005000205) #27	TAC4 (ENSSVLG00005000289) #28	DLX4 (ENSSVLG00005000355) #29	DLX3 (ENSSVLG00005000383) #30	ITGA3 (ENSSVLG00005000491) #31	PDK2 (ENSSVLG00005000596) #32	SAMD14 (ENSSVLG00005000645) #33	PPP1R9B (ENSSVLG00005000675) #34	SGCA (ENSSVLG00005000732) #36	ENSSVLG00005000770 #35	COL1A1 (ENSSVLG00005000823) #37
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000161386 #7	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000154298.a.b	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.a ##24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00730000111487 #35	ENSGT00940000156584 #37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000154298.a.b	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.a ##24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00940000156584 #37	ENSGT00940000158326
Guinea pig	MODERN SPECIES	53	HOXB9 (ENSCPOG00000037597) #7	HOXB13 (ENSCPOG00000013509) #8	TTLL6 (ENSCPOG00000012509) #9	CALCOCO2 (ENSCPOG00000021273) #10	ENSCPOG00000009017	UBE2Z (ENSCPOG00000024416) #12	SNF8 (ENSCPOG00000020610) #13	GIP (ENSCPOG00000023966) #14	IGF2BP1 (ENSCPOG00000020174) #15	B4GALNT2 (ENSCPOG00000006191) #16	GNGT2 (ENSCPOG00000030054) #17	ENSCPOG00000020987 #18	PHOSPHO1 (ENSCPOG00000024347) #19	ZNF652 (ENSCPOG00000039975) #20	PHB1 (ENSCPOG00000000430) #21	NGFR (ENSCPOG00000001114) #22	NXPH3 (ENSCPOG00000037584) #23	SPOP (ENSCPOG00000010810) ##24	SLC35B1 (ENSCPOG00000003757) #25	FAM117A (ENSCPOG00000019906) #26	KAT7 (ENSCPOG00000001822) #27	ENSCPOG00000030117 #28	DLX3 (ENSCPOG00000027011) #30	ITGA3 (ENSCPOG00000003582) #31	PDK2 (ENSCPOG00000021507) #32	SAMD14 (ENSCPOG00000034695) #33	PPP1R9B (ENSCPOG00000020296) #34	SGCA (ENSCPOG00000031317) #36	COL1A1 (ENSCPOG00000003329) #37	XYLT2 (ENSCPOG00000013276)	MRPL27 (ENSCPOG00000025999)
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000154298.a.b	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.a ##24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00940000156584 #37	ENSGT00940000158326	ENSGT00390000014660
Degu	MODERN SPECIES	97	HOXB13 (ENSODEG00000017199) #8	TTLL6 (ENSODEG00000017145) #9	ATP5MC1 (ENSODEG00000017366)	UBE2Z (ENSODEG00000017306) #12	ENSODEG00000017032 #13	GIP (ENSODEG00000017003) #14	ENSODEG00000017109	ENSODEG00000016991 #15	B4GALNT2 (ENSODEG00000018456) #16	GNGT2 (ENSODEG00000017526) #17	ABI3 (ENSODEG00000017358) #18	PHOSPHO1 (ENSODEG00000017221) #19	ZNF652 (ENSODEG00000017173) #20	ENSODEG00000020479	ENSODEG00000017118 #21	NGFR (ENSODEG00000017226) #22	NXPH3 (ENSODEG00000017090) #23	ENSODEG00000017139 ##24	SLC35B1 (ENSODEG00000016918) #25	FAM117A (ENSODEG00000016996) #26	KAT7 (ENSODEG00000016946) #27	ENSODEG00000017148	DLX4 (ENSODEG00000017011) #29	DLX3 (ENSODEG00000016990) #30	ITGA3 (ENSODEG00000017066) #31	PDK2 (ENSODEG00000016830) #32	SAMD14 (ENSODEG00000017349) #33	PPP1R9B (ENSODEG00000017914) #34	SGCA (ENSODEG00000016840) #36	COL1A1 (ENSODEG00000017010) #37	XYLT2 (ENSODEG00000016876)
Long-tailed chinchilla	MODERN SPECIES	158	ENSCLAG00000015198 #7	HOXB13 (ENSCLAG00000014855) #8	TTLL6 (ENSCLAG00000013529) #9	CALCOCO2 (ENSCLAG00000015881) #10	ATP5MC1 (ENSCLAG00000015723)	UBE2Z (ENSCLAG00000016068) #12	SNF8 (ENSCLAG00000013387) #13	ENSCLAG00000014301 #14	IGF2BP1 (ENSCLAG00000015853) #15	B4GALNT2 (ENSCLAG00000016224) #16	GNGT2 (ENSCLAG00000014970) #17	ABI3 (ENSCLAG00000015475) #18	PHOSPHO1 (ENSCLAG00000015042) #19	ZNF652 (ENSCLAG00000013368) #20	PHB1 (ENSCLAG00000013248) #21	NGFR (ENSCLAG00000015829) #22	NXPH3 (ENSCLAG00000014709) #23	SPOP (ENSCLAG00000014002) ##24	SLC35B1 (ENSCLAG00000014530) #25	FAM117A (ENSCLAG00000014145) #26	KAT7 (ENSCLAG00000013168) #27	DLX4 (ENSCLAG00000014126) #29	DLX3 (ENSCLAG00000013654) #30	ITGA3 (ENSCLAG00000015971) #31	PDK2 (ENSCLAG00000012203) #32	SAMD14 (ENSCLAG00000014202) #33	PPP1R9B (ENSCLAG00000012282) #34	ENSCLAG00000015827 #36	ENSCLAG00000015566 #36	COL1A1 (ENSCLAG00000016259) #37	XYLT2 (ENSCLAG00000013675)
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000048296	HOXB13 (ENSHGLG00000014634) #8	TTLL6 (ENSHGLG00000019187) #9	CALCOCO2 (ENSHGLG00000012114) #10	ATP5MC1 (ENSHGLG00000035460)	UBE2Z (ENSHGLG00000016280) #12	SNF8 (ENSHGLG00000011519) #13	ENSHGLG00000010703 #14	IGF2BP1 (ENSHGLG00000010492) #15	B4GALNT2 (ENSHGLG00000011792) #16	GNGT2 (ENSHGLG00000048834) #17	ABI3 (ENSHGLG00000012283) #18	PHOSPHO1 (ENSHGLG00000011269) #19	ZNF652 (ENSHGLG00000010452) #20	ENSHGLG00000011644 #21	NGFR (ENSHGLG00000012327) #22	ENSHGLG00000040671	NXPH3 (ENSHGLG00000011832) #23	SPOP (ENSHGLG00000041837) ##24	SLC35B1 (ENSHGLG00000041055) #25	FAM117A (ENSHGLG00000013356) #26	KAT7 (ENSHGLG00000012906) #27	ENSHGLG00000041037 #28	ENSHGLG00000012373 #29	DLX3 (ENSHGLG00000013267) #30	ITGA3 (ENSHGLG00000012904) #31	ENSHGLG00000014448 #32	SAMD14 (ENSHGLG00000019370) #33	PPP1R9B (ENSHGLG00000014173) #34	SGCA (ENSHGLG00000014247) #36	ENSHGLG00000050519 #35
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #8	ENSGT00940000161434 #9	ENSGT00950000183025.a #10	ENSGT00940000154298.a.b	ENSGT00940000159091 #12	ENSGT00390000007843 #13	ENSGT00390000005121 #14	ENSGT00940000160427 #15	ENSGT00390000006679.b #16	ENSGT01100000263525.b.a #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #36	ENSGT00940000156584 #37	ENSGT00390000014943	ENSGT00940000158326
Pika	MODERN SPECIES	3088														TBL1XR1 (ENSOPRG00000000857)	PHB1 (ENSOPRG00000000868) #21	NGFR (ENSOPRG00000000879) #22	SPOP (ENSOPRG00000000886) #24
Rabbit	MODERN SPECIES	10	HOXB13 (ENSOCUG00000012816) #8	TTLL6 (ENSOCUG00000006289) #9	ENSOCUG00000038154	CALCOCO2 (ENSOCUG00000016209) #10	ATP5MC1 (ENSOCUG00000016225)	UBE2Z (ENSOCUG00000009159) #12	SNF8 (ENSOCUG00000009156) #13	GIP (ENSOCUG00000004410) #14	IGF2BP1 (ENSOCUG00000004411) #15	B4GALNT2 (ENSOCUG00000003531) #16	GNGT2 (ENSOCUG00000016331) #17	ABI3 (ENSOCUG00000016339) #18	PHOSPHO1 (ENSOCUG00000016347) #19	ZNF652 (ENSOCUG00000002965) #20	ENSOCUG00000007209 #21	NGFR (ENSOCUG00000007635) #22	NXPH3 (ENSOCUG00000013921) #23	ENSOCUG00000034391	SPOP (ENSOCUG00000016723) #24	SLC35B1 (ENSOCUG00000023120) #25	FAM117A (ENSOCUG00000016733) #26	KAT7 (ENSOCUG00000000668) #27	TAC4 (ENSOCUG00000023306) #28	DLX4 (ENSOCUG00000022067) #29	DLX3 (ENSOCUG00000007833) #30	ITGA3 (ENSOCUG00000009990) #31	SAMD14 (ENSOCUG00000022140) #33	ENSOCUG00000022357 #32	ENSOCUG00000012304 #35	SGCA (ENSOCUG00000026736) #36	COL1A1 (ENSOCUG00000012881) #37