Theria	ANCESTRAL SPECIES	9	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00940000159720	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Primates	ANCESTRAL SPECIES	3	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Bushbaby	MODERN SPECIES	133	HOXB9 (ENSOGAG00000008668) #7	ENSOGAG00000034464 #8	HOXB13 (ENSOGAG00000032643) #9	TTLL6 (ENSOGAG00000011701) #10	CALCOCO2 (ENSOGAG00000011709) #11	ATP5MC1 (ENSOGAG00000011713) #12	UBE2Z (ENSOGAG00000001267) #13	ENSOGAG00000001269 #14	GIP (ENSOGAG00000010130) #15	IGF2BP1 (ENSOGAG00000001270) #16	B4GALNT2 (ENSOGAG00000003570) #17	ABI3 (ENSOGAG00000029723) #18	PHOSPHO1 (ENSOGAG00000034530) #19	ZNF652 (ENSOGAG00000003574) #20	ENSOGAG00000027015 #21	NGFR (ENSOGAG00000015270) #22	NXPH3 (ENSOGAG00000012792) #23	SPOP (ENSOGAG00000012793) #24	SLC35B1 (ENSOGAG00000001047) #25	FAM117A (ENSOGAG00000001048) #26	KAT7 (ENSOGAG00000001049) #27	TAC4 (ENSOGAG00000001052) #28	DLX4 (ENSOGAG00000005134) #29	DLX3 (ENSOGAG00000005136) #30	ITGA3 (ENSOGAG00000005138) #31	PDK2 (ENSOGAG00000005143) #32	SAMD14 (ENSOGAG00000025589) #33	PPP1R9B (ENSOGAG00000007812) #34	SGCA (ENSOGAG00000033076) #35	ENSOGAG00000027712 #36	COL1A1 (ENSOGAG00000024598) #37
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37
Greater bamboo lemur	MODERN SPECIES	1079										B4GALNT2 (ENSPSMG00000024407) #17	GNGT2 (ENSPSMG00000024402)	ABI3 (ENSPSMG00000024397) #18	PHOSPHO1 (ENSPSMG00000024394) #19	ZNF652 (ENSPSMG00000024391) #20	PHB1 (ENSPSMG00000024377) #21	NGFR (ENSPSMG00000024367) #22	NXPH3 (ENSPSMG00000024356) #23	SPOP (ENSPSMG00000024349) #24	SLC35B1 (ENSPSMG00000024325) #25	FAM117A (ENSPSMG00000024310) #26	KAT7 (ENSPSMG00000024267) #27	TAC4 (ENSPSMG00000024159) #28	DLX4 (ENSPSMG00000024154) #29	DLX3 (ENSPSMG00000024150) #30	ITGA3 (ENSPSMG00000024125) #31	PDK2 (ENSPSMG00000024072) #32	SAMD14 (ENSPSMG00000024063) #33	PPP1R9B (ENSPSMG00000024059) #34	ENSPSMG00000024052 #36	SGCA (ENSPSMG00000024047) #35	COL1A1 (ENSPSMG00000024033) #37
Coquerels sifaka	MODERN SPECIES	120	HOXB13 (ENSPCOG00000018182) #9	TTLL6 (ENSPCOG00000021391) #10	CALCOCO2 (ENSPCOG00000021998) #11	ENSPCOG00000008741	UBE2Z (ENSPCOG00000014816) #13	SNF8 (ENSPCOG00000026895) #14	GIP (ENSPCOG00000024832) #15	IGF2BP1 (ENSPCOG00000006475) #16	ENSPCOG00000018672	B4GALNT2 (ENSPCOG00000013984) #17	GNGT2 (ENSPCOG00000012867)	ABI3 (ENSPCOG00000022568) #18	PHOSPHO1 (ENSPCOG00000025336) #19	ZNF652 (ENSPCOG00000026434) #20	ENSPCOG00000004228 #21	NGFR (ENSPCOG00000018887) #22	NXPH3 (ENSPCOG00000013916) #23	SPOP (ENSPCOG00000015101) #24	SLC35B1 (ENSPCOG00000022007) #25	FAM117A (ENSPCOG00000024870) #26	KAT7 (ENSPCOG00000022157) #27	TAC4 (ENSPCOG00000003764) #28	DLX4 (ENSPCOG00000027773) #29	DLX3 (ENSPCOG00000027168) #30	ITGA3 (ENSPCOG00000024145) #31	PDK2 (ENSPCOG00000024290) #32	SAMD14 (ENSPCOG00000022625) #33	PPP1R9B (ENSPCOG00000022313) #34	SGCA (ENSPCOG00000018516) #35	COL1A1 (ENSPCOG00000022260) #37	TMEM92 (ENSPCOG00000016701)
Mouse lemur	MODERN SPECIES	7	HOXB13 (ENSMICG00000007546) #9	TTLL6 (ENSMICG00000007549) #10	CALCOCO2 (ENSMICG00000015330) #11	ENSMICG00000003414	UBE2Z (ENSMICG00000046102) #13	SNF8 (ENSMICG00000013305) #14	GIP (ENSMICG00000013317) #15	ENSMICG00000013324 #16	ENSMICG00000037104	B4GALNT2 (ENSMICG00000008596) #17	GNGT2 (ENSMICG00000045728)	ABI3 (ENSMICG00000008618) #18	PHOSPHO1 (ENSMICG00000032861) #19	ZNF652 (ENSMICG00000006959) #20	ENSMICG00000043778 #21	NGFR (ENSMICG00000037395) #22	NXPH3 (ENSMICG00000006985) #23	SPOP (ENSMICG00000006987) #24	SLC35B1 (ENSMICG00000016462) #25	FAM117A (ENSMICG00000031031) #26	KAT7 (ENSMICG00000016478) #27	TAC4 (ENSMICG00000016489) #28	DLX4 (ENSMICG00000031694) #29	DLX3 (ENSMICG00000037127) #30	ITGA3 (ENSMICG00000007204) #31	PDK2 (ENSMICG00000007219) #32	SAMD14 (ENSMICG00000007228) #33	PPP1R9B (ENSMICG00000027692) #34	ENSMICG00000038279	SGCA (ENSMICG00000007247) #35	COL1A1 (ENSMICG00000007252) #37
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843.v #14	ENSGT01100000264599	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843.v #14	ENSGT01100000264599	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00910000147886	ENSGT00950000183070.a.b.g.b.b.b ##21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00910000147886	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Hominidae	ANCESTRAL SPECIES	16	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Pan	ANCESTRAL SPECIES	3	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00940000161326	ENSGT00610000086191	ENSGT00940000153761.A	ENSGT00940000159306	ENSGT00390000002475	ENSGT00940000158001	ENSGT00440000037582	ENSGT00390000018418	ENSGT00940000162021	ENSGT00940000160414	ENSGT00940000157623	ENSGT00940000160323.b	ENSGT00390000010169	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a
Chimpanzee	MODERN SPECIES	8	HOXB13 (ENSPTRG00000009360) #9	TTLL6 (ENSPTRG00000009361) #10	CALCOCO2 (ENSPTRG00000009363) #11	ATP5MC1 (ENSPTRG00000009364) #12	ENSPTRG00000051053	UBE2Z (ENSPTRG00000009365) #13	SNF8 (ENSPTRG00000051067) #14	GIP (ENSPTRG00000009367) #15	IGF2BP1 (ENSPTRG00000009368) #16	B4GALNT2 (ENSPTRG00000009369) #17	GNGT2 (ENSPTRG00000009370)	ABI3 (ENSPTRG00000009371) #18	PHOSPHO1 (ENSPTRG00000009372) #19	ENSPTRG00000044551 #20	PHB1 (ENSPTRG00000009376) #21	NGFR (ENSPTRG00000009377) #22	GUCY2D (ENSPTRG00000008720)	CNTROB (ENSPTRG00000008719)	TRAPPC1 (ENSPTRG00000008717)	KCNAB3 (ENSPTRG00000008716)	RNF227 (ENSPTRG00000043140)	CHD3 (ENSPTRG00000008714)	CYB5D1 (ENSPTRG00000008713)	NAA38 (ENSPTRG00000008712)	TMEM88 (ENSPTRG00000008711)	KDM6B (ENSPTRG00000008710)	DNAH2 (ENSPTRG00000008709)	EFNB3 (ENSPTRG00000046966)	WRAP53 (ENSPTRG00000008705)	TP53 (ENSPTRG00000008703)	ATP1B2 (ENSPTRG00000008701)
Bonobo	MODERN SPECIES	8	HOXB13 (ENSPPAG00000027794) #9	TTLL6 (ENSPPAG00000036197) #10	CALCOCO2 (ENSPPAG00000037813) #11	ATP5MC1 (ENSPPAG00000039996) #12	ENSPPAG00000001213 #13	ENSPPAG00000029824	SNF8 (ENSPPAG00000030822) #14	ENSPPAG00000029732	IGF2BP1 (ENSPPAG00000040224) #16	B4GALNT2 (ENSPPAG00000033188) #17	ENSPPAG00000028035	ABI3 (ENSPPAG00000025669) #18	PHOSPHO1 (ENSPPAG00000042612) #19	ZNF652 (ENSPPAG00000024727) #20	ENSPPAG00000026668 #21	NGFR (ENSPPAG00000039815) #22	GUCY2D (ENSPPAG00000038449)	CNTROB (ENSPPAG00000035938)	TRAPPC1 (ENSPPAG00000029301)	KCNAB3 (ENSPPAG00000018201)	RNF227 (ENSPPAG00000040198)	CHD3 (ENSPPAG00000032886)	CYB5D1 (ENSPPAG00000037753)	ENSPPAG00000026097	TMEM88 (ENSPPAG00000035566)	KDM6B (ENSPPAG00000033078)	DNAH2 (ENSPPAG00000038375)	EFNB3 (ENSPPAG00000028302)	WRAP53 (ENSPPAG00000041493)	TP53 (ENSPPAG00000028702)	ATP1B2 (ENSPPAG00000035739)
Human	MODERN SPECIES	8	PRAC2 (ENSG00000229637)	HOXB13 (ENSG00000159184) #9	TTLL6 (ENSG00000170703) #10	CALCOCO2 (ENSG00000136436) #11	ATP5MC1 (ENSG00000159199) #12	UBE2Z (ENSG00000159202) #13	SNF8 (ENSG00000159210) #14	GIP (ENSG00000159224) #15	IGF2BP1 (ENSG00000159217) #16	B4GALNT2 (ENSG00000167080) #17	GNGT2 (ENSG00000167083)	ABI3 (ENSG00000108798) #18	PHOSPHO1 (ENSG00000173868) #19	ZNF652 (ENSG00000198740) #20	PHB1 (ENSG00000167085) #21	NGFR (ENSG00000064300) #22	NXPH3 (ENSG00000182575) #23	SPOP (ENSG00000121067) #24	SLC35B1 (ENSG00000121073) #25	FAM117A (ENSG00000121104) #26	KAT7 (ENSG00000136504) #27	TAC4 (ENSG00000176358) #28	DLX4 (ENSG00000108813) #29	DLX3 (ENSG00000064195) #30	ITGA3 (ENSG00000005884) #31	PDK2 (ENSG00000005882) #32	SAMD14 (ENSG00000167100) #33	PPP1R9B (ENSG00000108819) #34	SGCA (ENSG00000108823) #35	COL1A1 (ENSG00000108821) #37	TMEM92 (ENSG00000167105)
Gorilla	MODERN SPECIES	18	CALCOCO2 (ENSGGOG00000005537) #11	ENSGGOG00000040493	ATP5MC1 (ENSGGOG00000001626) #12	ENSGGOG00000041027	ENSGGOG00000041818 #13	SNF8 (ENSGGOG00000025290) #14	GIP (ENSGGOG00000013847) #15	IGF2BP1 (ENSGGOG00000008872) #16	B4GALNT2 (ENSGGOG00000008204) #17	ENSGGOG00000001953	ABI3 (ENSGGOG00000001954) #18	PHOSPHO1 (ENSGGOG00000001957) #19	ZNF652 (ENSGGOG00000010288) #20	PHB (ENSGGOG00000028002) #21	ENSGGOG00000037188	NGFR (ENSGGOG00000008434) #22	ENSGGOG00000036288 #23	ENSGGOG00000009295 #24	SLC35B1 (ENSGGOG00000004776) #25	FAM117A (ENSGGOG00000004783) #26	KAT7 (ENSGGOG00000007469) #27	TAC4 (ENSGGOG00000007479) #28	ENSGGOG00000042625	DLX4 (ENSGGOG00000014992) #29	DLX3 (ENSGGOG00000014997) #30	ITGA3 (ENSGGOG00000013558) #31	PDK2 (ENSGGOG00000015583) #32	SAMD14 (ENSGGOG00000015586) #33	PPP1R9B (ENSGGOG00000042350) #34	ENSGGOG00000013204 #36	SGCA (ENSGGOG00000013199) #35
Orangutan	MODERN SPECIES	8	ENSPPYG00000036609	HOXB13 (ENSPPYG00000008904) #9	TTLL6 (ENSPPYG00000008906) #10	CALCOCO2 (ENSPPYG00000008907) #11	ATP5MC1 (ENSPPYG00000008909) #12	UBE2Z (ENSPPYG00000032681) #13	ENSPPYG00000008911 #14	GIP (ENSPPYG00000008912) #15	IGF2BP1 (ENSPPYG00000008913) #16	B4GALNT2 (ENSPPYG00000008914) #17	ENSPPYG00000008915	ABI3 (ENSPPYG00000008916) #18	PHOSPHO1 (ENSPPYG00000008917) #19	ZNF652 (ENSPPYG00000008919) #20	ENSPPYG00000008920 #21	NGFR (ENSPPYG00000008921) #22	ENSPPYG00000034149 #23	SPOP (ENSPPYG00000008923) #24	ENSPPYG00000008924 #26	KAT7 (ENSPPYG00000008925) #27	TAC4 (ENSPPYG00000008926) #28	DLX4 (ENSPPYG00000008929) #29	DLX3 (ENSPPYG00000008930) #30	ITGA3 (ENSPPYG00000008931) #31	PDK2 (ENSPPYG00000008932) #32	SAMD14 (ENSPPYG00000008933) #33	PPP1R9B (ENSPPYG00000008934) #34	SGCA (ENSPPYG00000008935) #35	COL1A1 (ENSPPYG00000008937) #37	TMEM92 (ENSPPYG00000008938)	XYLT2 (ENSPPYG00000008287)
Gibbon	MODERN SPECIES	105	HOXB13 (ENSNLEG00000002594) #9	TTLL6 (ENSNLEG00000002601) #10	CALCOCO2 (ENSNLEG00000002619) #11	ATP5MC1 (ENSNLEG00000002718) #12	ENSNLEG00000002739 #13	SNF8 (ENSNLEG00000002743) #14	GIP (ENSNLEG00000002767) #15	IGF2BP1 (ENSNLEG00000002786) #16	B4GALNT2 (ENSNLEG00000002844) #17	ENSNLEG00000002931	ABI3 (ENSNLEG00000002938) #18	ENSNLEG00000018816 #19	ZNF652 (ENSNLEG00000027071) #20	PHB1 (ENSNLEG00000002978) #21	ENSNLEG00000031597	ENSNLEG00000003078 #22	ENSNLEG00000003086 #23	SPOP (ENSNLEG00000003088) #24	SLC35B1 (ENSNLEG00000003163) #25	FAM117A (ENSNLEG00000003198) #26	KAT7 (ENSNLEG00000003201) #27	ENSNLEG00000003272 #28	ENSNLEG00000003291 #29	DLX3 (ENSNLEG00000003294) #30	ENSNLEG00000030078
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h.u #21	ENSGT00910000147886	ENSGT00950000183070.a.b.g.b.b.b ##21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h.u #21	ENSGT00910000147886	ENSGT00950000183070.a.b.g.b.b.b ##21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Vervet Monkey	MODERN SPECIES	7	HOXB9 (ENSCSAG00000002521) #7	HOXB13 (ENSCSAG00000002517) #9	TTLL6 (ENSCSAG00000002511) #10	CALCOCO2 (ENSCSAG00000002506) #11	ATP5MC1 (ENSCSAG00000002502) #12	UBE2Z (ENSCSAG00000002496) #13	SNF8 (ENSCSAG00000002494) #14	GIP (ENSCSAG00000002491) #15	IGF2BP1 (ENSCSAG00000002487) #16	B4GALNT2 (ENSCSAG00000002479) #17	GNGT2 (ENSCSAG00000002475)	ABI3 (ENSCSAG00000002473) #18	PHOSPHO1 (ENSCSAG00000002465) #19	ZNF652 (ENSCSAG00000002462) #20	ENSCSAG00000002455 #21	NGFR (ENSCSAG00000002443) #22	NXPH3 (ENSCSAG00000002440) #23	SLC35B1 (ENSCSAG00000002438) #25	FAM117A (ENSCSAG00000002425) #26	C17orf99 (ENSCSAG00000002419)	SYNGR2 (ENSCSAG00000002418)	TK1 (ENSCSAG00000002415)	AFMID (ENSCSAG00000002407)	ENSCSAG00000002402	TMEM235 (ENSCSAG00000002397)	SOCS3 (ENSCSAG00000019044)	PGS1 (ENSCSAG00000002394)	DNAH17 (ENSCSAG00000002383)	CYTH1 (ENSCSAG00000002370)	USP36 (ENSCSAG00000002367)	TIMP2 (ENSCSAG00000002364)
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00950000183198.c.a.a.b	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h.u #21	ENSGT00910000147886	ENSGT00950000183070.a.b.g.b.b.b ##21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157744 #27	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37	ENSGT00390000014943
Macaca	ANCESTRAL SPECIES	4	ENSGT00940000161434 #10	ENSGT00950000183198.c.a.a.b	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b.e #12	ENSGT00940000159091 #13	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h.u #21	ENSGT00910000147886	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157744 #27	ENSGT01090000261853	ENSGT00940000153525.g.b.b.a.b.a.b.b	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00940000161434 #10	ENSGT00950000183198.c.a.a.b	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b.e #12	ENSGT00940000159091 #13	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h.u #21	ENSGT00910000147886	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157744 #27	ENSGT00940000153525.g.b.b.a.b.a.b.b	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37	ENSGT00390000014943
Crab-eating macaque	MODERN SPECIES	7	CALCOCO2 (ENSMFAG00000000840) #11	ENSMFAG00000055147	ENSMFAG00000037178 #12	UBE2Z (ENSMFAG00000045564) #13	SNF8 (ENSMFAG00000000584) #14	GIP (ENSMFAG00000045846) #15	ENSMFAG00000059536	IGF2BP1 (ENSMFAG00000001613) #16	B4GALNT2 (ENSMFAG00000003631) #17	GNGT2 (ENSMFAG00000001055)	ENSMFAG00000062119 #18	PHOSPHO1 (ENSMFAG00000041672) #19	ZNF652 (ENSMFAG00000039085) #20	PHB1 (ENSMFAG00000042554) #21	ENSMFAG00000051302	NGFR (ENSMFAG00000044019) #22	NXPH3 (ENSMFAG00000041457) #23	SPOP (ENSMFAG00000000752) #24	SLC35B1 (ENSMFAG00000025107) #25	FAM117A (ENSMFAG00000039391) #26	ENSMFAG00000061536	KAT7 (ENSMFAG00000036338) #27	ENSMFAG00000051274	ENSMFAG00000049058	ENSMFAG00000044227	DLX4 (ENSMFAG00000013144) #29	DLX3 (ENSMFAG00000032276) #30	ITGA3 (ENSMFAG00000043382) #31	PDK2 (ENSMFAG00000042437) #32	SAMD14 (ENSMFAG00000045601) #33	PPP1R9B (ENSMFAG00000041494) #34
Rhesus	MODERN SPECIES	7	TTLL6 (ENSMMUG00000003436) #10	ENSMMUG00000016305	ATP5MC1 (ENSMMUG00000013395) #12	UBE2Z (ENSMMUG00000057164) #13	SNF8 (ENSMMUG00000021087) #14	GIP (ENSMMUG00000049405) #15	IGF2BP1 (ENSMMUG00000011533) #16	CALCOCO2 (ENSMMUG00000012178) #11	ENSMMUG00000057553	B4GALNT2 (ENSMMUG00000015845) #17	ABI3 (ENSMMUG00000002437) #18	PHOSPHO1 (ENSMMUG00000002436) #19	ZNF652 (ENSMMUG00000003453) #20	PHB1 (ENSMMUG00000000156) #21	ENSMMUG00000065166	NGFR (ENSMMUG00000014603) #22	ENSMMUG00000064469	NXPH3 (ENSMMUG00000003383) #23	SPOP (ENSMMUG00000018752) #24	SLC35B1 (ENSMMUG00000008870) #26	KAT7 (ENSMMUG00000047550) #27	ENSMMUG00000050934	ENSMMUG00000049512	DLX4 (ENSMMUG00000017658) #29	DLX3 (ENSMMUG00000000157) #30	ITGA3 (ENSMMUG00000000153) #31	PDK2 (ENSMMUG00000014685) #32	SAMD14 (ENSMMUG00000014687) #33	PPP1R9B (ENSMMUG00000020061) #34	SGCA (ENSMMUG00000001466) #35	ENSMMUG00000051568
Pig-tailed macaque	MODERN SPECIES	494	TTLL6 (ENSMNEG00000035034) #10	CALCOCO2 (ENSMNEG00000041410) #11	ENSMNEG00000027016	ENSMNEG00000011359 #12	UBE2Z (ENSMNEG00000040572) #13	SNF8 (ENSMNEG00000032473) #14	GIP (ENSMNEG00000042307) #15	IGF2BP1 (ENSMNEG00000033825) #16	B4GALNT2 (ENSMNEG00000044329) #17	GNGT2 (ENSMNEG00000029921)	ABI3 (ENSMNEG00000036355) #18	PHOSPHO1 (ENSMNEG00000028521) #19	ZNF652 (ENSMNEG00000037260) #20	ENSMNEG00000030128 #21	ENSMNEG00000026686	NGFR (ENSMNEG00000043507) #22	NXPH3 (ENSMNEG00000038163) #23	SPOP (ENSMNEG00000044368) #24	SLC35B1 (ENSMNEG00000042757) #25	ENSMNEG00000044360 #26	KAT7 (ENSMNEG00000044419) #27	ENSMNEG00000029555	DLX4 (ENSMNEG00000035926) #29	DLX3 (ENSMNEG00000031310) #30	ITGA3 (ENSMNEG00000029777) #31	PDK2 (ENSMNEG00000042768) #32	SAMD14 (ENSMNEG00000043590) #33	PPP1R9B (ENSMNEG00000033285) #34	SGCA (ENSMNEG00000040835) #35	ENSMNEG00000024961 #36	COL1A1 (ENSMNEG00000038612) #37
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183198.c.a.a.b	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h.u #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157744 #27	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37	ENSGT00390000014943
Olive baboon	MODERN SPECIES	8	ENSPANG00000049214	CALCOCO2 (ENSPANG00000022881) #11	ATP5MC1 (ENSPANG00000022880) #12	UBE2Z (ENSPANG00000022830) #13	SNF8 (ENSPANG00000022831) #14	GIP (ENSPANG00000022832) #15	IGF2BP1 (ENSPANG00000022833) #16	ENSPANG00000049141	ENSPANG00000038197	B4GALNT2 (ENSPANG00000022834) #17	GNGT2 (ENSPANG00000022835)	ABI3 (ENSPANG00000042285) #18	PHOSPHO1 (ENSPANG00000018531) #19	ZNF652 (ENSPANG00000022829) #20	PHB1 (ENSPANG00000022828) #21	NGFR (ENSPANG00000022819) #22	NXPH3 (ENSPANG00000022820) #23	SPOP (ENSPANG00000022821) #24	SLC35B1 (ENSPANG00000022822) #25	ENSPANG00000022823 #26	KAT7 (ENSPANG00000022824) #27	DLX4 (ENSPANG00000022817) #29	DLX3 (ENSPANG00000041730) #30	ENSPANG00000046741 #31	PDK2 (ENSPANG00000022651) #32	SAMD14 (ENSPANG00000022624) #33	PPP1R9B (ENSPANG00000049495) #34	SGCA (ENSPANG00000022636) #35	COL1A1 (ENSPANG00000022601) #37	ENSPANG00000037162	XYLT2 (ENSPANG00000022500)
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00940000161434 #10	ENSGT00950000183198.c.a.a.b	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00390000018696.n	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h.u #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157744 #27	ENSGT01090000261853	ENSGT00940000153525.g.b.b.a.b.a.b.b	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35
Drill	MODERN SPECIES	1297	HOXB13 (ENSMLEG00000043860) #9	TTLL6 (ENSMLEG00000023683) #10	CALCOCO2 (ENSMLEG00000034129) #11	ATP5MC1 (ENSMLEG00000026746) #12	UBE2Z (ENSMLEG00000043345) #13	SNF8 (ENSMLEG00000037501) #14	GIP (ENSMLEG00000032963) #15	ENSMLEG00000043660	IGF2BP1 (ENSMLEG00000026086) #16	B4GALNT2 (ENSMLEG00000020666) #17	GNGT2 (ENSMLEG00000036852)	ABI3 (ENSMLEG00000030652) #18	PHOSPHO1 (ENSMLEG00000039410) #19	ZNF652 (ENSMLEG00000034995) #20	ENSMLEG00000043194 ##21	NGFR (ENSMLEG00000009406) #22	NXPH3 (ENSMLEG00000043510) #23	SPOP (ENSMLEG00000043280) #24	SLC35B1 (ENSMLEG00000028555) #25	ENSMLEG00000001352 #26	KAT7 (ENSMLEG00000043692) #27	ENSMLEG00000031342	ENSMLEG00000037371	DLX4 (ENSMLEG00000029820) #29	DLX3 (ENSMLEG00000026314) #30	ITGA3 (ENSMLEG00000030402) #31	PDK2 (ENSMLEG00000041794) #32	SAMD14 (ENSMLEG00000042974) #33	ENSMLEG00000039748 #34	SGCA (ENSMLEG00000028724) #35	COL1A1 (ENSMLEG00000034469) #37
Sooty mangabey	MODERN SPECIES	564	TTLL6 (ENSCATG00000029768) #10	ENSCATG00000016293	CALCOCO2 (ENSCATG00000007708) #11	ATP5MC1 (ENSCATG00000030174) #12	UBE2Z (ENSCATG00000038755) #13	SNF8 (ENSCATG00000038375) #14	GIP (ENSCATG00000031593) #15	ENSCATG00000044943	IGF2BP1 (ENSCATG00000041707) #16	B4GALNT2 (ENSCATG00000041984) #17	GNGT2 (ENSCATG00000040371)	ABI3 (ENSCATG00000044608) #18	PHOSPHO1 (ENSCATG00000040780) #19	ZNF652 (ENSCATG00000039244) #20	ENSCATG00000044390 #21	NGFR (ENSCATG00000030822) #22	NXPH3 (ENSCATG00000030177) #23	SPOP (ENSCATG00000028294) #24	SLC35B1 (ENSCATG00000036462) #25	ENSCATG00000042140 #26	KAT7 (ENSCATG00000030056) #27	ENSCATG00000035460	ENSCATG00000000745	DLX4 (ENSCATG00000036886) #29	DLX3 (ENSCATG00000044310) #30	ITGA3 (ENSCATG00000022073) #31	PDK2 (ENSCATG00000032247) #32	SAMD14 (ENSCATG00000031573) #33	PPP1R9B (ENSCATG00000037746) #34	ENSCATG00000044884 #36	SGCA (ENSCATG00000004963) #35
Rhinopithecus	ANCESTRAL SPECIES	19	ENSGT00860000135909	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.k #19	ENSGT00940000157416 #20	ENSGT00910000147886	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000163054	ENSGT00940000157744 #27	ENSGT01090000261853	ENSGT00390000006238.n	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35
Black snub-nosed monkey	MODERN SPECIES	1661	PRAC2 (ENSRBIG00000032698)	HOXB13 (ENSRBIG00000035598) #9	TTLL6 (ENSRBIG00000035925) #10	CALCOCO2 (ENSRBIG00000035235) #11	ATP5MC1 (ENSRBIG00000026711) #12	UBE2Z (ENSRBIG00000038578) #13	SNF8 (ENSRBIG00000038039) #14	GIP (ENSRBIG00000039886) #15	IGF2BP1 (ENSRBIG00000035739) #16	B4GALNT2 (ENSRBIG00000035256) #17	GNGT2 (ENSRBIG00000042345)	ABI3 (ENSRBIG00000020770) #18	PHOSPHO1 (ENSRBIG00000041603) #19	ZNF652 (ENSRBIG00000044859) #20	ENSRBIG00000044848 #21	NGFR (ENSRBIG00000044844) #22	NXPH3 (ENSRBIG00000043134) #23	SPOP (ENSRBIG00000035729) #24	SLC35B1 (ENSRBIG00000034096) #25	FAM117A (ENSRBIG00000031638) #26	ENSRBIG00000011981	KAT7 (ENSRBIG00000031559) #27	ENSRBIG00000005357	ENSRBIG00000040783	ENSRBIG00000013434	DLX4 (ENSRBIG00000042692) #29	DLX3 (ENSRBIG00000037611) #30	ITGA3 (ENSRBIG00000031472) #31	PDK2 (ENSRBIG00000029967) #32	SAMD14 (ENSRBIG00000040751) #33	PPP1R9B (ENSRBIG00000000643) #34
Golden snub-nosed monkey	MODERN SPECIES	585	TTLL6 (ENSRROG00000044208) #10	CALCOCO2 (ENSRROG00000042598) #11	ATP5MC1 (ENSRROG00000031127) #12	UBE2Z (ENSRROG00000038314) #13	SNF8 (ENSRROG00000041052) #14	GIP (ENSRROG00000029793) #15	IGF2BP1 (ENSRROG00000039581) #16	ENSRROG00000030406	B4GALNT2 (ENSRROG00000001500) #17	GNGT2 (ENSRROG00000021991)	ABI3 (ENSRROG00000038650) #18	PHOSPHO1 (ENSRROG00000036306) #19	ZNF652 (ENSRROG00000045147) #20	ENSRROG00000038767 #21	ENSRROG00000003131	NGFR (ENSRROG00000032770) #22	NXPH3 (ENSRROG00000035416) #23	SPOP (ENSRROG00000044140) #24	SLC35B1 (ENSRROG00000034434) #25	FAM117A (ENSRROG00000031075) #26	ENSRROG00000035494
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.m #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744.e #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Cebidae	ANCESTRAL SPECIES	10	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.m #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744.e #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a.t.b #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843.u.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.m #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744.e #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Bolivian squirrel monkey	MODERN SPECIES	86	HOXB13 (ENSSBOG00000029964) #9	TTLL6 (ENSSBOG00000028908) #10	CALCOCO2 (ENSSBOG00000035276) #11	ENSSBOG00000028794	UBE2Z (ENSSBOG00000036224) #13	ENSSBOG00000028176	SNF8 (ENSSBOG00000026186) #14	GIP (ENSSBOG00000020793) #15	IGF2BP1 (ENSSBOG00000020973) #16	B4GALNT2 (ENSSBOG00000026556) #17	GNGT2 (ENSSBOG00000030712)	ABI3 (ENSSBOG00000013949) #18	PHOSPHO1 (ENSSBOG00000031500) #19	ZNF652 (ENSSBOG00000029507) #20	ENSSBOG00000029361 #21	NGFR (ENSSBOG00000031345) #22	NXPH3 (ENSSBOG00000028337) #23	SPOP (ENSSBOG00000031919) #24	SLC35B1 (ENSSBOG00000032295) #25	FAM117A (ENSSBOG00000034596) #26	KAT7 (ENSSBOG00000031238) #27	TAC4 (ENSSBOG00000006746) #28	DLX4 (ENSSBOG00000025750) #29	DLX3 (ENSSBOG00000033912) #30	ITGA3 (ENSSBOG00000019078) #31	PDK2 (ENSSBOG00000020937) #32	SAMD14 (ENSSBOG00000035764) #33	PPP1R9B (ENSSBOG00000016072) #34	SGCA (ENSSBOG00000035857) #35	ENSSBOG00000032392 #36	COL1A1 (ENSSBOG00000005091) #37
Capuchin	MODERN SPECIES	123	PAQR3 (ENSCCAG00000030402)	TTLL6 (ENSCCAG00000031760) #10	ENSCCAG00000031353	ENSCCAG00000033997 #11	ENSCCAG00000035420	UBE2Z (ENSCCAG00000034036) #13	SNF8 (ENSCCAG00000025774) #14	GIP (ENSCCAG00000032674) #15	IGF2BP1 (ENSCCAG00000031817) #16	B4GALNT2 (ENSCCAG00000029481) #17	GNGT2 (ENSCCAG00000021230)	ABI3 (ENSCCAG00000034155) #18	PHOSPHO1 (ENSCCAG00000031753) #19	ZNF652 (ENSCCAG00000034341) #20	ENSCCAG00000031356 #21	NGFR (ENSCCAG00000032956) #22	NXPH3 (ENSCCAG00000027739) #23	SPOP (ENSCCAG00000026049) #24	SLC35B1 (ENSCCAG00000035827) #25	FAM117A (ENSCCAG00000027827) #26	ENSCCAG00000023588 #27	TAC4 (ENSCCAG00000027771) #28	DLX4 (ENSCCAG00000031363) #29	DLX3 (ENSCCAG00000025849) #30	ITGA3 (ENSCCAG00000036669) #31	PDK2 (ENSCCAG00000032710) #32	SAMD14 (ENSCCAG00000035479) #33	PPP1R9B (ENSCCAG00000027982) #34	SGCA (ENSCCAG00000021320) #35	COL1A1 (ENSCCAG00000021036) #37	TMEM92 (ENSCCAG00000028039)
Marmoset	MODERN SPECIES	17	HOXB13 (ENSCJAG00000007437) #9	TTLL6 (ENSCJAG00000007395) #10	CALCOCO2 (ENSCJAG00000007375) #11	ATP5MC1 (ENSCJAG00000075375) #12	UBE2Z (ENSCJAG00000007326) #13	SNF8 (ENSCJAG00000007322) #14	GIP (ENSCJAG00000007300) #15	IGF2BP1 (ENSCJAG00000007258) #16	ENSCJAG00000079002	B4GALNT2 (ENSCJAG00000007247) #17	GNGT2 (ENSCJAG00000041153)	ABI3 (ENSCJAG00000007219) #18	PHOSPHO1 (ENSCJAG00000047817) #19	ZNF652 (ENSCJAG00000007206) #20	PHB1 (ENSCJAG00000007174) #21	NGFR (ENSCJAG00000048552) #22	NXPH3 (ENSCJAG00000047530) #23	SPOP (ENSCJAG00000045260) #24	SLC35B1 (ENSCJAG00000007077) #25	FAM117A (ENSCJAG00000007066) #26	KAT7 (ENSCJAG00000007037) #27	TAC4 (ENSCJAG00000007010) #28	DLX4 (ENSCJAG00000054881) #29	DLX3 (ENSCJAG00000006990) #30	ITGA3 (ENSCJAG00000006922) #31	PDK2 (ENSCJAG00000006896) #32	SAMD14 (ENSCJAG00000006872) #33	PPP1R9B (ENSCJAG00000006847) #34	SGCA (ENSCJAG00000003794) #35	COL1A1 (ENSCJAG00000003818) #37	ENSCJAG00000073201
Mas night monkey	MODERN SPECIES	481	HOXB13 (ENSANAG00000023991) #9	PRAC2 (ENSANAG00000025557)	TTLL6 (ENSANAG00000031133) #10	ENSANAG00000020581 #11	ATP5MC1 (ENSANAG00000024881) #12	UBE2Z (ENSANAG00000029636) #13	SNF8 (ENSANAG00000032764) #14	GIP (ENSANAG00000030188) #15	IGF2BP1 (ENSANAG00000022606) #16	B4GALNT2 (ENSANAG00000023170) #17	GNGT2 (ENSANAG00000020682)	ABI3 (ENSANAG00000029869) #18	ENSANAG00000032587 #19	ZNF652 (ENSANAG00000031074) #20	ENSANAG00000025483 #21	NGFR (ENSANAG00000021546) #22	ENSANAG00000019908
Tarsier	MODERN SPECIES	5478														ZNF652 (ENSTSYG00000010857) #20	PHB (ENSTSYG00000033521) #21	NGFR (ENSTSYG00000035206) #22	NXPH3 (ENSTSYG00000036745) #23	SPOP (ENSTSYG00000007619) #24	SLC35B1 (ENSTSYG00000010825) #25	ENSTSYG00000010827 #26	KAT7 (ENSTSYG00000010854) #27	TAC4 (ENSTSYG00000011398) #28	DLX4 (ENSTSYG00000037377) #29	ENSTSYG00000035249
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00990000209473	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000163054	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35
Tree shrew	MODERN SPECIES	3473												GNGT2 (ENSTBEG00000010401)	ZNF652 (ENSTBEG00000010480) #20	PHB1 (ENSTBEG00000010537) #21	ENSTBEG00000010582	ENSTBEG00000010763 #22
Glires	ANCESTRAL SPECIES	3	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00990000209473	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37	ENSGT00390000014943	ENSGT00940000158326
Pika	MODERN SPECIES	3088														TBL1XR1 (ENSOPRG00000000857)	PHB1 (ENSOPRG00000000868) #21	NGFR (ENSOPRG00000000879) #22	SPOP (ENSOPRG00000000886) #24
Rabbit	MODERN SPECIES	10	HOXB13 (ENSOCUG00000012816) #9	TTLL6 (ENSOCUG00000006289) #10	ENSOCUG00000038154	CALCOCO2 (ENSOCUG00000016209) #11	ATP5MC1 (ENSOCUG00000016225) #12	UBE2Z (ENSOCUG00000009159) #13	SNF8 (ENSOCUG00000009156) #14	GIP (ENSOCUG00000004410) #15	IGF2BP1 (ENSOCUG00000004411) #16	B4GALNT2 (ENSOCUG00000003531) #17	GNGT2 (ENSOCUG00000016331)	ABI3 (ENSOCUG00000016339) #18	PHOSPHO1 (ENSOCUG00000016347) #19	ZNF652 (ENSOCUG00000002965) #20	ENSOCUG00000007209 #21	NGFR (ENSOCUG00000007635) #22	NXPH3 (ENSOCUG00000013921) #23	ENSOCUG00000034391	SPOP (ENSOCUG00000016723) #24	SLC35B1 (ENSOCUG00000023120) #25	FAM117A (ENSOCUG00000016733) #26	KAT7 (ENSOCUG00000000668) #27	TAC4 (ENSOCUG00000023306) #28	DLX4 (ENSOCUG00000022067) #29	DLX3 (ENSOCUG00000007833) #30	ITGA3 (ENSOCUG00000009990) #31	SAMD14 (ENSOCUG00000022140) #33	ENSOCUG00000022357 #32	ENSOCUG00000012304 #36	SGCA (ENSOCUG00000026736) #35	COL1A1 (ENSOCUG00000012881) #37
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00990000209473	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00950000185094	ENSGT00940000154376.b.f #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Muroidea	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h.jb #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Mus	ANCESTRAL SPECIES	2	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00860000136060	ENSGT00950000183070.a.b.h.jb #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00860000136060	ENSGT00950000183070.a.b.h.jb #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00860000136060	ENSGT00950000183070.a.b.h.jb #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00860000136060	ENSGT00950000183070.a.b.h.jb #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
spretus	MODERN SPECIES	2	Hoxb13 (MGP_SPRETEiJ_G0017869) #9	Ttll6 (MGP_SPRETEiJ_G0017868) #10	MGP_SPRETEiJ_G0017867 #11	Atp5g1 (MGP_SPRETEiJ_G0017866)	Ube2z (MGP_SPRETEiJ_G0017865) #13	Snf8 (MGP_SPRETEiJ_G0017864) #14	Gip (MGP_SPRETEiJ_G0017863) #15	Igf2bp1 (MGP_SPRETEiJ_G0017862) #16	B4galnt2 (MGP_SPRETEiJ_G0017861) #17	Gngt2 (MGP_SPRETEiJ_G0017860)	MGP_SPRETEiJ_G0017859 #18	Phospho1 (MGP_SPRETEiJ_G0017858) #19	MGP_SPRETEiJ_G0017857	Zfp652 (MGP_SPRETEiJ_G0017856) #20	Phb (MGP_SPRETEiJ_G0017855) #21	Ngfr (MGP_SPRETEiJ_G0017854) #22	Nxph3 (MGP_SPRETEiJ_G0017853) #23	MGP_SPRETEiJ_G0017852 #24	Slc35b1 (MGP_SPRETEiJ_G0017851) #25	Fam117a (MGP_SPRETEiJ_G0017850) #26	Kat7 (MGP_SPRETEiJ_G0017849) #27	Tac4 (MGP_SPRETEiJ_G0017848) #28	Dlx4 (MGP_SPRETEiJ_G0017847) #29	Dlx3 (MGP_SPRETEiJ_G0017846) #30	Itga3 (MGP_SPRETEiJ_G0017845) #31	Pdk2 (MGP_SPRETEiJ_G0017844) #32	Samd14 (MGP_SPRETEiJ_G0017843) #33	Ppp1r9b (MGP_SPRETEiJ_G0017842) #34	H1f9 (MGP_SPRETEiJ_G0017841) #36	Sgca (MGP_SPRETEiJ_G0017840) #35	Col1a1 (MGP_SPRETEiJ_G0017839) #37
Steppe mouse	MODERN SPECIES	3291	Ttll6 (ENSMSIG00000018881) #10	ENSMSIG00000018956 #11	Atp5g1 (ENSMSIG00000018986)	Ube2z (ENSMSIG00000019038) #13	Snf8 (ENSMSIG00000019072) #14	Gip (ENSMSIG00000019162) #15	Igf2bp1 (ENSMSIG00000019193) #16	B4galnt2 (ENSMSIG00000019230) #17	Gngt2 (ENSMSIG00000019268)	Abi3 (ENSMSIG00000019324) #18	Phospho1 (ENSMSIG00000019336) #19	Zfp652 (ENSMSIG00000019372) #20	ENSMSIG00000019385	ENSMSIG00000019388	ENSMSIG00000019393 #21	Ngfr (ENSMSIG00000019412) #22	Nxph3 (ENSMSIG00000019422) #23	Spop (ENSMSIG00000019434) #24	Slc35b1 (ENSMSIG00000019515) #25	Fam117a (ENSMSIG00000019538) #26	Kat7 (ENSMSIG00000019556) #27	Tac4 (ENSMSIG00000019727) #28	Dlx4 (ENSMSIG00000019740) #29	Dlx3 (ENSMSIG00000019752) #30	Itga3 (ENSMSIG00000019761) #31	Pdk2 (ENSMSIG00000019841) #32	Samd14 (ENSMSIG00000019863) #33	Ppp1r9b (ENSMSIG00000019879) #34	Sgca (ENSMSIG00000019913) #35	H1f9 (ENSMSIG00000019945) #36	Col1a1 (ENSMSIG00000019958) #37
Mouse	MODERN SPECIES	2	Hoxb9 (ENSMUSG00000020875) #7	Hoxb13 (ENSMUSG00000049604) #9	Ttll6 (ENSMUSG00000038756) #10	Calcoco2 (ENSMUSG00000006056) #11	Atp5g1 (ENSMUSG00000006057)	Ube2z (ENSMUSG00000014349) #13	Snf8 (ENSMUSG00000006058) #14	Gip (ENSMUSG00000014351) #15	Igf2bp1 (ENSMUSG00000013415) #16	B4galnt2 (ENSMUSG00000013418) #17	Gngt2 (ENSMUSG00000038811)	Abi3 (ENSMUSG00000018381) #18	Phospho1 (ENSMUSG00000050860) #19	Zfp652 (ENSMUSG00000075595) #20	Phb (ENSMUSG00000038845) #21	Ngfr (ENSMUSG00000000120) #22	Nxph3 (ENSMUSG00000046719) #23	Spop (ENSMUSG00000057522) #24	Slc35b1 (ENSMUSG00000020873) #25	Fam117a (ENSMUSG00000038893) #26	Kat7 (ENSMUSG00000038909) #27	Tac4 (ENSMUSG00000020872) #28	Dlx4 (ENSMUSG00000020871) #29	Dlx3 (ENSMUSG00000001510) #30	Itga3 (ENSMUSG00000001507) #31	Pdk2 (ENSMUSG00000038967) #32	Samd14 (ENSMUSG00000047181) #33	Ppp1r9b (ENSMUSG00000038976) #34	H1f9 (ENSMUSG00000038994) #36	Sgca (ENSMUSG00000001508) #35	Col1a1 (ENSMUSG00000001506) #37
Ryukyu mouse	MODERN SPECIES	2	Hoxb9 (MGP_CAROLIEiJ_G0017024) #7	Hoxb13 (MGP_CAROLIEiJ_G0017023) #9	Ttll6 (MGP_CAROLIEiJ_G0017022) #10	MGP_CAROLIEiJ_G0017021 #11	MGP_CAROLIEiJ_G0017020	MGP_CAROLIEiJ_G0017019 #13	Snf8 (MGP_CAROLIEiJ_G0017018) #14	Gip (MGP_CAROLIEiJ_G0017017) #15	Igf2bp1 (MGP_CAROLIEiJ_G0017016) #16	B4galnt2 (MGP_CAROLIEiJ_G0017015) #17	Gngt2 (MGP_CAROLIEiJ_G0017014)	Abi3 (MGP_CAROLIEiJ_G0017013) #18	Phospho1 (MGP_CAROLIEiJ_G0017012) #19	MGP_CAROLIEiJ_G0017011 #20	MGP_CAROLIEiJ_G0017010 #21	Ngfr (MGP_CAROLIEiJ_G0017009) #22	Nxph3 (MGP_CAROLIEiJ_G0017008) #23	MGP_CAROLIEiJ_G0017007 #24	Slc35b1 (MGP_CAROLIEiJ_G0017006) #25	Fam117a (MGP_CAROLIEiJ_G0017005) #26	Kat7 (MGP_CAROLIEiJ_G0017004) #27	Tac4 (MGP_CAROLIEiJ_G0017003) #28	MGP_CAROLIEiJ_G0017002 #29	Dlx3 (MGP_CAROLIEiJ_G0017001) #30	Itga3 (MGP_CAROLIEiJ_G0017000) #31	Pdk2 (MGP_CAROLIEiJ_G0016999) #32	Samd14 (MGP_CAROLIEiJ_G0016998) #33	Ppp1r9b (MGP_CAROLIEiJ_G0016997) #34	H1f9 (MGP_CAROLIEiJ_G0016996) #36	Sgca (MGP_CAROLIEiJ_G0016995) #35	Col1a1 (MGP_CAROLIEiJ_G0016994) #37
Shrew mouse	MODERN SPECIES	5	Hoxb13 (MGP_PahariEiJ_G0018153) #9	Ttll6 (MGP_PahariEiJ_G0018152) #10	MGP_PahariEiJ_G0018151 #11	Atp5g1 (MGP_PahariEiJ_G0018150)	Ube2z (MGP_PahariEiJ_G0018149) #13	Snf8 (MGP_PahariEiJ_G0018148) #14	Gip (MGP_PahariEiJ_G0018147) #15	MGP_PahariEiJ_G0018146 #16	B4galnt2 (MGP_PahariEiJ_G0018145) #17	Gngt2 (MGP_PahariEiJ_G0018144)	Abi3 (MGP_PahariEiJ_G0018143) #18	Phospho1 (MGP_PahariEiJ_G0018142) #19	MGP_PahariEiJ_G0018141	Zfp652 (MGP_PahariEiJ_G0018140) #20	MGP_PahariEiJ_G0018139 #21	Ngfr (MGP_PahariEiJ_G0018138) #22	Nxph3 (MGP_PahariEiJ_G0018137) #23	Spop (MGP_PahariEiJ_G0018136) #24	Slc35b1 (MGP_PahariEiJ_G0018135) #25	Fam117a (MGP_PahariEiJ_G0018134) #26	Kat7 (MGP_PahariEiJ_G0018133) #27	MGP_PahariEiJ_G0018132 #28	Dlx4 (MGP_PahariEiJ_G0018131) #29	Dlx3 (MGP_PahariEiJ_G0018130) #30	Itga3 (MGP_PahariEiJ_G0018129) #31	Pdk2 (MGP_PahariEiJ_G0018128) #32	Samd14 (MGP_PahariEiJ_G0018127) #33	Ppp1r9b (MGP_PahariEiJ_G0018126) #34	MGP_PahariEiJ_G0018125 #36	Sgca (MGP_PahariEiJ_G0018124) #35	Col1a1 (MGP_PahariEiJ_G0018123) #37
Rat	MODERN SPECIES	1	Hoxb8 (ENSRNOG00000007585)	Hoxb9 (ENSRNOG00000007573) #7	Hoxb13 (ENSRNOG00000007491) #9	Ttll6 (ENSRNOG00000004939) #10	ENSRNOG00000066153 #11	Ube2z (ENSRNOG00000006868) #13	Snf8 (ENSRNOG00000006500) #14	Gip (ENSRNOG00000006306) #15	Igf2bp1 (ENSRNOG00000006122) #16	B4galnt2 (ENSRNOG00000067203) #17	Abi3 (ENSRNOG00000005575) #18	Phospho1 (ENSRNOG00000005569) #19	ENSRNOG00000068958	Zfp652 (ENSRNOG00000017001) #20	Phb1 (ENSRNOG00000046799) #21	Ngfr (ENSRNOG00000005392) #22	Nxph3 (ENSRNOG00000005185) #23	Spop (ENSRNOG00000004686) #24	Slc35b1 (ENSRNOG00000004510) #25	Fam117a (ENSRNOG00000004417) #26	AABR07030375.1 (ENSRNOG00000022375)	Kat7 (ENSRNOG00000022664) #27	Tac4 (ENSRNOG00000004404) #28	Dlx4 (ENSRNOG00000004399) #29	Dlx3 (ENSRNOG00000004278) #30	Itga3 (ENSRNOG00000004276) #31	Pdk2 (ENSRNOG00000004172) #32	Samd14 (ENSRNOG00000004155) #33	Ppp1r9b (ENSRNOG00000052113) #34	Hils1 (ENSRNOG00000024041) #36	Sgca (ENSRNOG00000003998) #35
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.ab	ENSGT00940000159720.`b.a.a	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.`b.b	ENSGT00940000159720.`b.a.a	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000163054	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37
Golden Hamster	MODERN SPECIES	674	Hoxb7 (ENSMAUG00000021297)	Hoxb8 (ENSMAUG00000012636)	Hoxb9 (ENSMAUG00000017720) #7	Hoxb13 (ENSMAUG00000008407) #9	Ttll6 (ENSMAUG00000020973) #10	ENSMAUG00000021751	Ube2z (ENSMAUG00000007792) #13	Snf8 (ENSMAUG00000001857) #14	Gip (ENSMAUG00000009238) #15	B4galnt2 (ENSMAUG00000007916) #17	Gngt2 (ENSMAUG00000019144)	Abi3 (ENSMAUG00000021085) #18	Phospho1 (ENSMAUG00000012074) #19	Zfp652 (ENSMAUG00000009337) #20	Phb (ENSMAUG00000013028) #21	Ngfr (ENSMAUG00000019765) #22	Nxph3 (ENSMAUG00000016785) #23	ENSMAUG00000008827	Spop (ENSMAUG00000001558) #24	Slc35b1 (ENSMAUG00000001422) #25	Fam117a (ENSMAUG00000018942) #26	ENSMAUG00000018213	Tac4 (ENSMAUG00000006918) #28	Dlx3 (ENSMAUG00000011673) #30	Itga3 (ENSMAUG00000013250) #31	Pdk2 (ENSMAUG00000020321) #32	Samd14 (ENSMAUG00000010153) #33	Ppp1r9b (ENSMAUG00000013974) #34	Sgca (ENSMAUG00000009888) #35	Col1a1 (ENSMAUG00000019272) #37	Xylt2 (ENSMAUG00000020996)
Chinese hamster chok1gshd	MODERN SPECIES	33	Hoxb13 (ENSCGRG00001015060) #9	Ttll6 (ENSCGRG00001018398) #10	ENSCGRG00001011435 #11	ENSCGRG00001010560	ENSCGRG00001022606	Ube2z (ENSCGRG00001019150) #13	Snf8 (ENSCGRG00001000737) #14	Gip (ENSCGRG00001021533) #15	ENSCGRG00001000282 #16	B4galnt2 (ENSCGRG00001014272) #17	Gngt2 (ENSCGRG00001021265)	Abi3 (ENSCGRG00001013274) #18	Phospho1 (ENSCGRG00001009639) #19	Zfp652 (ENSCGRG00001018513) #20	Phb (ENSCGRG00001008513) #21	Ngfr (ENSCGRG00001022139) #22	Nxph3 (ENSCGRG00001014680) #23	Spop (ENSCGRG00001024062) #24	Slc35b1 (ENSCGRG00001006734) #25	Fam117a (ENSCGRG00001009494) #26	ENSCGRG00001005107	Tac4 (ENSCGRG00001001077) #28	Dlx4 (ENSCGRG00001019843) #29	Dlx3 (ENSCGRG00001022154) #30	Itga3 (ENSCGRG00001021353) #31	Pdk2 (ENSCGRG00001014853) #32	Samd14 (ENSCGRG00001002338) #33	Ppp1r9b (ENSCGRG00001012352) #34	H1f9 (ENSCGRG00001005718) #36	Sgca (ENSCGRG00001019141) #35	Col1a1 (ENSCGRG00001020668) #37
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.ab	ENSGT00940000159720.`b.a.a	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37
Prairie vole	MODERN SPECIES	15	Wipi1 (ENSMOCG00000019305)	Arsg (ENSMOCG00000017412)	Slc16a6 (ENSMOCG00000017493)	Amz2 (ENSMOCG00000011962)	Gna13 (ENSMOCG00000018065)	Rgs9 (ENSMOCG00000009988)	ENSMOCG00000002639	Axin2 (ENSMOCG00000017644)	Igf2bp1 (ENSMOCG00000010232) #16	B4galnt2 (ENSMOCG00000006515) #17	Gngt2 (ENSMOCG00000009807)	Abi3 (ENSMOCG00000006282) #18	Phospho1 (ENSMOCG00000011323) #19	Zfp652 (ENSMOCG00000017054) #20	ENSMOCG00000013553 #21	Ngfr (ENSMOCG00000011552) #22	Nxph3 (ENSMOCG00000019725) #23	Spop (ENSMOCG00000017955) #24	Slc35b1 (ENSMOCG00000006471) #25	Fam117a (ENSMOCG00000004559) #26	Kat7 (ENSMOCG00000012946) #27	Tac4 (ENSMOCG00000015203) #28	Dlx4 (ENSMOCG00000013049) #29	Dlx3 (ENSMOCG00000019860) #30	Itga3 (ENSMOCG00000007772) #31	Pdk2 (ENSMOCG00000019896) #32	Samd14 (ENSMOCG00000012339) #33	Ppp1r9b (ENSMOCG00000004637) #34	Sgca (ENSMOCG00000019942) #35	Col1a1 (ENSMOCG00000022060) #37	Tmem92 (ENSMOCG00000013915)
Northern American deer mouse	MODERN SPECIES	21	Hoxb13 (ENSPEMG00000021511) #9	Ttll6 (ENSPEMG00000021918) #10	ENSPEMG00000025676 #11	ENSPEMG00000028729 #11	Atp5g1 (ENSPEMG00000020590)	Ube2z (ENSPEMG00000020953) #13	Snf8 (ENSPEMG00000022229) #14	Gip (ENSPEMG00000021184) #15	Igf2bp1 (ENSPEMG00000021974) #16	B4galnt2 (ENSPEMG00000020717) #17	Gngt2 (ENSPEMG00000027491)	Abi3 (ENSPEMG00000014242) #18	Phospho1 (ENSPEMG00000026539) #19	Zfp652 (ENSPEMG00000020862) #20	Phb (ENSPEMG00000021310) #21	Ngfr (ENSPEMG00000020336) #22	Nxph3 (ENSPEMG00000027912) #23	Spop (ENSPEMG00000012191) #24	ENSPEMG00000026857	ENSPEMG00000021039 #25	Fam117a (ENSPEMG00000020788) #26	Kat7 (ENSPEMG00000020984) #27	Tac4 (ENSPEMG00000014516) #28	Dlx4 (ENSPEMG00000004265) #29	Dlx3 (ENSPEMG00000028715) #30	Itga3 (ENSPEMG00000023588) #31	Pdk2 (ENSPEMG00000020540) #32	Samd14 (ENSPEMG00000020781) #33	Ppp1r9b (ENSPEMG00000020691) #34	ENSPEMG00000024353 #36	Sgca (ENSPEMG00000021738) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Hoxb9 (ENSNGAG00000010851) #7	Hoxb13 (ENSNGAG00000011053) #9	Ttll6 (ENSNGAG00000011763) #10	ENSNGAG00000023585 #11	ENSNGAG00000024212	Ube2z (ENSNGAG00000024296) #13	Snf8 (ENSNGAG00000001366) #14	Gip (ENSNGAG00000020354) #15	Igf2bp1 (ENSNGAG00000015679) #16	B4galnt2 (ENSNGAG00000016426) #17	Gngt2 (ENSNGAG00000001081)	Abi3 (ENSNGAG00000003386) #18	Phospho1 (ENSNGAG00000008704) #19	Zfp652 (ENSNGAG00000010366) #20	Phb (ENSNGAG00000012333) #21	Ngfr (ENSNGAG00000016145) #22	Nxph3 (ENSNGAG00000021464) #23	ENSNGAG00000011377 #24	Slc35b1 (ENSNGAG00000017143) #25	Fam117a (ENSNGAG00000018414) #26	Kat7 (ENSNGAG00000021224) #27	Tac4 (ENSNGAG00000016792) #28	Dlx4 (ENSNGAG00000017759) #29	Dlx3 (ENSNGAG00000022310) #30	Itga3 (ENSNGAG00000001240) #31	Pdk2 (ENSNGAG00000022231) #32	Samd14 (ENSNGAG00000024291) #33	Ppp1r9b (ENSNGAG00000006328) #34	ENSNGAG00000014768 #35	Col1a1 (ENSNGAG00000018018) #37	Xylt2 (ENSNGAG00000022851)
Lesser Egyptian jerboa	MODERN SPECIES	56	Hoxb13 (ENSJJAG00000010401) #9	Ttll6 (ENSJJAG00000010253) #10	ENSJJAG00000010301	ENSJJAG00000003530 #13	Snf8 (ENSJJAG00000006012) #14	Gip (ENSJJAG00000010688) #15	Igf2bp1 (ENSJJAG00000002687) #16	B4galnt2 (ENSJJAG00000006322) #17	ENSJJAG00000002566	Gngt2 (ENSJJAG00000002044)	Abi3 (ENSJJAG00000002821) #18	Phospho1 (ENSJJAG00000010499) #19	Zfp652 (ENSJJAG00000010496) #20	ENSJJAG00000006327	ENSJJAG00000009251 #21	Ngfr (ENSJJAG00000003615) #22	Nxph3 (ENSJJAG00000002621) #23	Spop (ENSJJAG00000004272) #24	Slc35b1 (ENSJJAG00000003707) #25	Fam117a (ENSJJAG00000008152) #26	Kat7 (ENSJJAG00000010625) #27	Dlx4 (ENSJJAG00000008185) #29	Dlx3 (ENSJJAG00000002767) #30	Itga3 (ENSJJAG00000010876) #31	Pdk2 (ENSJJAG00000009652) #32	Samd14 (ENSJJAG00000004713) #33	Ppp1r9b (ENSJJAG00000008310) #34	Sgca (ENSJJAG00000006156) #35	Col1a1 (ENSJJAG00000011070) #37	Xylt2 (ENSJJAG00000010800)	Mrpl27 (ENSJJAG00000006271)
Kangaroo rat	MODERN SPECIES	326	Hoxb7 (ENSDORG00000007905)	Hoxb8 (ENSDORG00000007906)	Hoxb9 (ENSDORG00000027423) #7	Hoxb13 (ENSDORG00000008369) #9	ENSDORG00000024585 #11	ENSDORG00000028385	ENSDORG00000008511 #12	Ube2z (ENSDORG00000009258) #13	Snf8 (ENSDORG00000009262) #14	Igf2bp1 (ENSDORG00000014371) #16	Gngt2 (ENSDORG00000023588)	Abi3 (ENSDORG00000002245) #18	Phospho1 (ENSDORG00000002249) #19	Zfp652 (ENSDORG00000028287) #20	ENSDORG00000004455 #21	Ngfr (ENSDORG00000004457) #22	Nxph3 (ENSDORG00000001674) #23	Spop (ENSDORG00000001680) #24	Slc35b1 (ENSDORG00000014742) #25	Fam117a (ENSDORG00000014743) #26	Kat7 (ENSDORG00000014746) #27	Dlx4 (ENSDORG00000007200) #29	Itga3 (ENSDORG00000013491) #31	Pdk2 (ENSDORG00000013494) #32	Samd14 (ENSDORG00000013495) #33	ENSDORG00000013497 #34	Sgca (ENSDORG00000013499) #35	ENSDORG00000013502	Xylt2 (ENSDORG00000001024)	Mrpl27 (ENSDORG00000001026)	Lrrc59 (ENSDORG00000030092)
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00990000209473	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.a #24	ENSGT00950000185094	ENSGT00940000154376.b.f #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00990000209473	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b.f #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b.f #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744.g #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.f #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744.g #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Arctic ground squirrel	MODERN SPECIES	46	HOXB9 (ENSUPAG00010006305) #7	HOXB13 (ENSUPAG00010006301) #9	TTLL6 (ENSUPAG00010006267) #10	CALCOCO2 (ENSUPAG00010006243) #11	ENSUPAG00010006195	UBE2Z (ENSUPAG00010006178) #13	SNF8 (ENSUPAG00010006148) #14	GIP (ENSUPAG00010006136) #15	IGF2BP1 (ENSUPAG00010006100) #16	B4GALNT2 (ENSUPAG00010006086) #17	GNGT2 (ENSUPAG00010006078)	ABI3 (ENSUPAG00010006071) #18	PHOSPHO1 (ENSUPAG00010006065) #19	ZNF652 (ENSUPAG00010006043) #20	PHB1 (ENSUPAG00010006031) #21	NGFR (ENSUPAG00010006025) #22	NXPH3 (ENSUPAG00010006022) #23	SPOP (ENSUPAG00010005991) #24	SLC35B1 (ENSUPAG00010005981) #25	ENSUPAG00010005976 #26	KAT7 (ENSUPAG00010005813) #27	ENSUPAG00010005806 #28	DLX4 (ENSUPAG00010005802) #29	DLX3 (ENSUPAG00010005796) #30	ITGA3 (ENSUPAG00010005752) #31	PDK2 (ENSUPAG00010005730) #32	SAMD14 (ENSUPAG00010005699) #33	PPP1R9B (ENSUPAG00010005692) #34	ENSUPAG00010005686 #36	SGCA (ENSUPAG00010005661) #35	COL1A1 (ENSUPAG00010005604) #37
Squirrel	MODERN SPECIES	90	HOXB13 (ENSSTOG00000014942) #9	ENSSTOG00000025444	TTLL6 (ENSSTOG00000006016) #10	ENSSTOG00000013395 #11	ATP5MC1 (ENSSTOG00000013404) #12	UBE2Z (ENSSTOG00000000796) #13	SNF8 (ENSSTOG00000004023) #14	GIP (ENSSTOG00000004043) #15	IGF2BP1 (ENSSTOG00000010643) #16	B4GALNT2 (ENSSTOG00000007604) #17	GNGT2 (ENSSTOG00000007644)	ABI3 (ENSSTOG00000020017) #18	PHOSPHO1 (ENSSTOG00000007651) #19	ZNF652 (ENSSTOG00000011303) #20	ENSSTOG00000019929 #21	NGFR (ENSSTOG00000007836) #22	NXPH3 (ENSSTOG00000023834) #23	SPOP (ENSSTOG00000007851) #24	SLC35B1 (ENSSTOG00000007868) #25	FAM117A (ENSSTOG00000007894) #26	KAT7 (ENSSTOG00000021252) #27	ENSSTOG00000007934 #28	DLX4 (ENSSTOG00000026218) #29	DLX3 (ENSSTOG00000010314) #30	ITGA3 (ENSSTOG00000014843) #31	PDK2 (ENSSTOG00000014856) #32	SAMD14 (ENSSTOG00000014861) #33	ENSSTOG00000022256 #34	ENSSTOG00000024093 #36	SGCA (ENSSTOG00000024920) #35	COL1A1 (ENSSTOG00000001973) #37
Alpin marmot	MODERN SPECIES	42	HOXB7 (ENSMMMG00000001087)	HOXB13 (ENSMMMG00000001064) #9	TTLL6 (ENSMMMG00000001013) #10	ENSMMMG00000000759 #11	ATP5MC1 (ENSMMMG00000000731) #12	UBE2Z (ENSMMMG00000000717) #13	SNF8 (ENSMMMG00000000680) #14	GIP (ENSMMMG00000000652) #15	IGF2BP1 (ENSMMMG00000000613) #16	B4GALNT2 (ENSMMMG00000000569) #17	GNGT2 (ENSMMMG00000000525)	ABI3 (ENSMMMG00000000452) #18	PHOSPHO1 (ENSMMMG00000000434) #19	ZNF652 (ENSMMMG00000000403) #20	PHB1 (ENSMMMG00000000385) #21	NGFR (ENSMMMG00000000369) #22	NXPH3 (ENSMMMG00000000359) #23	ENSMMMG00000000355	ENSMMMG00000000303 #24	SLC35B1 (ENSMMMG00000000273) #25	FAM117A (ENSMMMG00000000258) #26	ENSMMMG00000000100 #27	DLX4 (ENSMMMG00000022762) #29	DLX3 (ENSMMMG00000022760) #30	ITGA3 (ENSMMMG00000022740) #31	PDK2 (ENSMMMG00000022729) #32	SAMD14 (ENSMMMG00000022727) #33	PPP1R9B (ENSMMMG00000022710) #34	SGCA (ENSMMMG00000022707) #35	ENSMMMG00000022701 #36	COL1A1 (ENSMMMG00000022693) #37
Eurasian red squirrel	MODERN SPECIES	12	HOXB13 (ENSSVLG00005019820) #9	TTLL6 (ENSSVLG00005020005) #10	CALCOCO2 (ENSSVLG00005020296) #11	ATP5MC1 (ENSSVLG00005020344) #12	UBE2Z (ENSSVLG00005020428) #13	ENSSVLG00005020450	SNF8 (ENSSVLG00005020472) #14	GIP (ENSSVLG00005020522) #15	IGF2BP1 (ENSSVLG00005020596) #16	B4GALNT2 (ENSSVLG00005020850) #17	GNGT2 (ENSSVLG00005021063)	ABI3 (ENSSVLG00005021097) #18	ENSSVLG00005021191 #19	ZNF652 (ENSSVLG00005021244) #20	PHB1 (ENSSVLG00005021310) #21	NGFR (ENSSVLG00005021364) #22	NXPH3 (ENSSVLG00005021450) #23	SPOP (ENSSVLG00005021469) #24	SLC35B1 (ENSSVLG00005021505) #25	ENSSVLG00005021540 #26	KAT7 (ENSSVLG00005000205) #27	TAC4 (ENSSVLG00005000289) #28	DLX4 (ENSSVLG00005000355) #29	DLX3 (ENSSVLG00005000383) #30	ITGA3 (ENSSVLG00005000491) #31	PDK2 (ENSSVLG00005000596) #32	SAMD14 (ENSSVLG00005000645) #33	PPP1R9B (ENSSVLG00005000675) #34	SGCA (ENSSVLG00005000732) #35	ENSSVLG00005000770 #36	COL1A1 (ENSSVLG00005000823) #37
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.a #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.a #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37	ENSGT00940000158326
Guinea pig	MODERN SPECIES	53	HOXB9 (ENSCPOG00000037597) #7	HOXB13 (ENSCPOG00000013509) #9	TTLL6 (ENSCPOG00000012509) #10	CALCOCO2 (ENSCPOG00000021273) #11	ENSCPOG00000009017 #12	UBE2Z (ENSCPOG00000024416) #13	SNF8 (ENSCPOG00000020610) #14	GIP (ENSCPOG00000023966) #15	IGF2BP1 (ENSCPOG00000020174) #16	B4GALNT2 (ENSCPOG00000006191) #17	GNGT2 (ENSCPOG00000030054)	ENSCPOG00000020987 #18	PHOSPHO1 (ENSCPOG00000024347) #19	ZNF652 (ENSCPOG00000039975) #20	PHB1 (ENSCPOG00000000430) #21	NGFR (ENSCPOG00000001114) #22	NXPH3 (ENSCPOG00000037584) #23	SPOP (ENSCPOG00000010810) #24	SLC35B1 (ENSCPOG00000003757) #25	FAM117A (ENSCPOG00000019906) #26	KAT7 (ENSCPOG00000001822) #27	ENSCPOG00000030117 #28	DLX3 (ENSCPOG00000027011) #30	ITGA3 (ENSCPOG00000003582) #31	PDK2 (ENSCPOG00000021507) #32	SAMD14 (ENSCPOG00000034695) #33	PPP1R9B (ENSCPOG00000020296) #34	SGCA (ENSCPOG00000031317) #35	COL1A1 (ENSCPOG00000003329) #37	XYLT2 (ENSCPOG00000013276)	MRPL27 (ENSCPOG00000025999)
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b.h #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b.e.a #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37	ENSGT00940000158326	ENSGT00390000014660
Degu	MODERN SPECIES	97	HOXB13 (ENSODEG00000017199) #9	TTLL6 (ENSODEG00000017145) #10	ATP5MC1 (ENSODEG00000017366) #12	UBE2Z (ENSODEG00000017306) #13	ENSODEG00000017032 #14	GIP (ENSODEG00000017003) #15	ENSODEG00000017109	ENSODEG00000016991 #16	B4GALNT2 (ENSODEG00000018456) #17	GNGT2 (ENSODEG00000017526)	ABI3 (ENSODEG00000017358) #18	PHOSPHO1 (ENSODEG00000017221) #19	ZNF652 (ENSODEG00000017173) #20	ENSODEG00000020479	ENSODEG00000017118 #21	NGFR (ENSODEG00000017226) #22	NXPH3 (ENSODEG00000017090) #23	ENSODEG00000017139 #24	SLC35B1 (ENSODEG00000016918) #25	FAM117A (ENSODEG00000016996) #26	KAT7 (ENSODEG00000016946) #27	ENSODEG00000017148	DLX4 (ENSODEG00000017011) #29	DLX3 (ENSODEG00000016990) #30	ITGA3 (ENSODEG00000017066) #31	PDK2 (ENSODEG00000016830) #32	SAMD14 (ENSODEG00000017349) #33	PPP1R9B (ENSODEG00000017914) #34	SGCA (ENSODEG00000016840) #35	COL1A1 (ENSODEG00000017010) #37	XYLT2 (ENSODEG00000016876)
Long-tailed chinchilla	MODERN SPECIES	158	ENSCLAG00000015198 #7	HOXB13 (ENSCLAG00000014855) #9	TTLL6 (ENSCLAG00000013529) #10	CALCOCO2 (ENSCLAG00000015881) #11	ATP5MC1 (ENSCLAG00000015723) #12	UBE2Z (ENSCLAG00000016068) #13	SNF8 (ENSCLAG00000013387) #14	ENSCLAG00000014301 #15	IGF2BP1 (ENSCLAG00000015853) #16	B4GALNT2 (ENSCLAG00000016224) #17	GNGT2 (ENSCLAG00000014970)	ABI3 (ENSCLAG00000015475) #18	PHOSPHO1 (ENSCLAG00000015042) #19	ZNF652 (ENSCLAG00000013368) #20	PHB1 (ENSCLAG00000013248) #21	NGFR (ENSCLAG00000015829) #22	NXPH3 (ENSCLAG00000014709) #23	SPOP (ENSCLAG00000014002) #24	SLC35B1 (ENSCLAG00000014530) #25	FAM117A (ENSCLAG00000014145) #26	KAT7 (ENSCLAG00000013168) #27	DLX4 (ENSCLAG00000014126) #29	DLX3 (ENSCLAG00000013654) #30	ITGA3 (ENSCLAG00000015971) #31	PDK2 (ENSCLAG00000012203) #32	SAMD14 (ENSCLAG00000014202) #33	PPP1R9B (ENSCLAG00000012282) #34	ENSCLAG00000015827 #35	ENSCLAG00000015566 #35	COL1A1 (ENSCLAG00000016259) #37	XYLT2 (ENSCLAG00000013675)
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000048296	HOXB13 (ENSHGLG00000014634) #9	TTLL6 (ENSHGLG00000019187) #10	CALCOCO2 (ENSHGLG00000012114) #11	ATP5MC1 (ENSHGLG00000035460) #12	UBE2Z (ENSHGLG00000016280) #13	SNF8 (ENSHGLG00000011519) #14	ENSHGLG00000010703 #15	IGF2BP1 (ENSHGLG00000010492) #16	B4GALNT2 (ENSHGLG00000011792) #17	GNGT2 (ENSHGLG00000048834)	ABI3 (ENSHGLG00000012283) #18	PHOSPHO1 (ENSHGLG00000011269) #19	ZNF652 (ENSHGLG00000010452) #20	ENSHGLG00000011644 #21	NGFR (ENSHGLG00000012327) #22	ENSHGLG00000040671	NXPH3 (ENSHGLG00000011832) #23	SPOP (ENSHGLG00000041837) #24	SLC35B1 (ENSHGLG00000041055) #25	FAM117A (ENSHGLG00000013356) #26	KAT7 (ENSHGLG00000012906) #27	ENSHGLG00000041037 #28	ENSHGLG00000012373 #29	DLX3 (ENSHGLG00000013267) #30	ITGA3 (ENSHGLG00000012904) #31	ENSHGLG00000014448 #32	SAMD14 (ENSHGLG00000019370) #33	PPP1R9B (ENSHGLG00000014173) #34	SGCA (ENSHGLG00000014247) #35	ENSHGLG00000050519 #36
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00730000110974 #22
Hedgehog	MODERN SPECIES	4767																NGFR (ENSEEUG00000004802) #22
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00990000209473	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35
Cetacea	ANCESTRAL SPECIES	5	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.g	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.c #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Odontoceti	ANCESTRAL SPECIES	16	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.g	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.c.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b.a.a #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.g	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.c.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b.a.a #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.g	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.c.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b.a.a #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.g	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a.c.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b.a.a #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35
Beluga whale	MODERN SPECIES	26	HOXB9 (ENSDLEG00000004838) #7	HOXB13 (ENSDLEG00000004844) #9	TTLL6 (ENSDLEG00000004850) #10	CALCOCO2 (ENSDLEG00000004861) #11	ATP5G1 (ENSDLEG00000004867)	UBE2Z (ENSDLEG00000004871) #13	SNF8 (ENSDLEG00000004876) #14	GIP (ENSDLEG00000004882) #15	IGF2BP1 (ENSDLEG00000004887) #16	B4GALNT2 (ENSDLEG00000004906) #17	GNGT2 (ENSDLEG00000004944)	ABI3 (ENSDLEG00000004950) #18	PHOSPHO1 (ENSDLEG00000004963) #19	ZNF652 (ENSDLEG00000004967) #20	PHB (ENSDLEG00000004975) #21	NGFR (ENSDLEG00000004981) #22	NXPH3 (ENSDLEG00000004987) #23	ENSDLEG00000004990	SPOP (ENSDLEG00000004995) #24	SLC35B1 (ENSDLEG00000005010) #25	FAM117A (ENSDLEG00000005017) #26	KAT7 (ENSDLEG00000005028) #27	DLX4 (ENSDLEG00000005046) #29	DLX3 (ENSDLEG00000005062) #30	ITGA3 (ENSDLEG00000005065) #31	PDK2 (ENSDLEG00000005081) #32	SAMD14 (ENSDLEG00000005099) #33	PPP1R9B (ENSDLEG00000005110) #34	SGCA (ENSDLEG00000005120) #35	ENSDLEG00000005129 #36	TMEM92 (ENSDLEG00000005220)
Narwhal	MODERN SPECIES	316	HOXB9 (ENSMMNG00015016160) #7	HOXB13 (ENSMMNG00015016080) #9	TTLL6 (ENSMMNG00015015987) #10	CALCOCO2 (ENSMMNG00015022060) #11	ENSMMNG00015022058	UBE2Z (ENSMMNG00015022057) #13	ENSMMNG00015022056 #14	GIP (ENSMMNG00015022055) #15	IGF2BP1 (ENSMMNG00015022053) #16	B4GALNT2 (ENSMMNG00015022052) #17	GNGT2 (ENSMMNG00015022051)	ABI3 (ENSMMNG00015022050) #18	ENSMMNG00015022049 #19	ZNF652 (ENSMMNG00015022048) #20	PHB1 (ENSMMNG00015022047) #21	NGFR (ENSMMNG00015022046) #22	NXPH3 (ENSMMNG00015022045) #23	ENSMMNG00015022044	SPOP (ENSMMNG00015022043) #24	SLC35B1 (ENSMMNG00015022042) #25	ENSMMNG00015022041 #26	KAT7 (ENSMMNG00015022040) #27	TAC4 (ENSMMNG00015022039) #28	DLX4 (ENSMMNG00015022038) #29	DLX3 (ENSMMNG00015022037) #30	ITGA3 (ENSMMNG00015022036) #31	PDK2 (ENSMMNG00015022035) #32	SAMD14 (ENSMMNG00015022034) #33	PPP1R9B (ENSMMNG00015022033) #34	ENSMMNG00015022032 #36	SGCA (ENSMMNG00015022031) #35
Vaquita	MODERN SPECIES	12	HOXB13 (ENSPSNG00000017233) #9	TTLL6 (ENSPSNG00000017015) #10	CALCOCO2 (ENSPSNG00000016749) #11	ENSPSNG00000016635	UBE2Z (ENSPSNG00000016576) #13	SNF8 (ENSPSNG00000016533) #14	GIP (ENSPSNG00000016483) #15	IGF2BP1 (ENSPSNG00000016168) #16	ENSPSNG00000016103	B4GALNT2 (ENSPSNG00000015839) #17	GNGT2 (ENSPSNG00000015777)	ABI3 (ENSPSNG00000015585) #18	PHOSPHO1 (ENSPSNG00000015535) #19	ZNF652 (ENSPSNG00000015435) #20	PHB1 (ENSPSNG00000015363) #21	NGFR (ENSPSNG00000015210) #22	NXPH3 (ENSPSNG00000015160) #23	ENSPSNG00000015121	SPOP (ENSPSNG00000015068) #24	SLC35B1 (ENSPSNG00000014969) #25	ENSPSNG00000014915 #26	KAT7 (ENSPSNG00000014685) #27	ENSPSNG00000014556 #28	DLX4 (ENSPSNG00000014503) #29	DLX3 (ENSPSNG00000014423) #30	ITGA3 (ENSPSNG00000014254) #31	PDK2 (ENSPSNG00000014164) #32	SAMD14 (ENSPSNG00000014101) #33	PPP1R9B (ENSPSNG00000014049) #34	ENSPSNG00000013967 #36	SGCA (ENSPSNG00000013631) #35
Dolphin	MODERN SPECIES	3909																NGFR (ENSTTRG00000007987) #22
Sperm whale	MODERN SPECIES	5	HOXB5 (ENSPCTG00005004905)	HOXB6 (ENSPCTG00005004887)	HOXB7 (ENSPCTG00005004882)	HOXB8 (ENSPCTG00005004864)	HOXB9 (ENSPCTG00005004847) #7	HOXB13 (ENSPCTG00005004788) #9	TTLL6 (ENSPCTG00005004739) #10	CALCOCO2 (ENSPCTG00005004611) #11	ATP5MC1 (ENSPCTG00005004516) #13	SNF8 (ENSPCTG00005004481) #14	ENSPCTG00005004464	GIP (ENSPCTG00005004443) #15	IGF2BP1 (ENSPCTG00005004404) #16	B4GALNT2 (ENSPCTG00005004337) #17	ZNF652 (ENSPCTG00005004307) #20	NGFR (ENSPCTG00005004279) #22	NXPH3 (ENSPCTG00005004256) #23	SPOP (ENSPCTG00005004228) #24	SLC35B1 (ENSPCTG00005004200) #25	FAM117A (ENSPCTG00005004179) #26	KAT7 (ENSPCTG00005022544) #27	TAC4 (ENSPCTG00005022538) #28	DLX4 (ENSPCTG00005022536) #29	DLX3 (ENSPCTG00005022534) #30	XYLT2 (ENSPCTG00005022531)	MRPL27 (ENSPCTG00005022528)	EME1 (ENSPCTG00005022527)	LRRC59 (ENSPCTG00005022526)	ENSPCTG00005022524	ACSF2 (ENSPCTG00005022522)	RSAD1 (ENSPCTG00005022518)
Blue whale	MODERN SPECIES	12	HOXB13 (ENSBMSG00010017547) #9	TTLL6 (ENSBMSG00010017444) #10	CALCOCO2 (ENSBMSG00010017255) #11	ENSBMSG00010017179	ATP5MC1 (ENSBMSG00010017142) #12	UBE2Z (ENSBMSG00010017102) #13	SNF8 (ENSBMSG00010017067) #14	GIP (ENSBMSG00010017026) #15	IGF2BP1 (ENSBMSG00010016894) #16	B4GALNT2 (ENSBMSG00010016748) #17	GNGT2 (ENSBMSG00010016723)	ABI3 (ENSBMSG00010016693) #18	ENSBMSG00010016656 #19	ZNF652 (ENSBMSG00010016625) #20	PHB1 (ENSBMSG00010016580) #21	NGFR (ENSBMSG00010016537) #22	NXPH3 (ENSBMSG00010016515) #23	ENSBMSG00010016496	SPOP (ENSBMSG00010016457) #24	ENSBMSG00010016392 #25	FAM117A (ENSBMSG00010016280) #26	KAT7 (ENSBMSG00010016090) #27	TAC4 (ENSBMSG00010015794) #28	DLX4 (ENSBMSG00010015698) #29	DLX3 (ENSBMSG00010015657) #30	ITGA3 (ENSBMSG00010015331) #31	PDK2 (ENSBMSG00010015249) #32	SAMD14 (ENSBMSG00010015203) #33	PPP1R9B (ENSBMSG00010015173) #34	ENSBMSG00010015139 #36	SGCA (ENSBMSG00010015088) #35
Pecora	ANCESTRAL SPECIES	1	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00960000190593	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36
Yarkand deer	MODERN SPECIES	28	HOXB9 (ENSCHYG00000004623) #7	HOXB13 (ENSCHYG00000004599) #9	TTLL6 (ENSCHYG00000004571) #10	ENSCHYG00000004521 #11	ENSCHYG00000004493	ENSCHYG00000004476	UBE2Z (ENSCHYG00000004456) #13	SNF8 (ENSCHYG00000004443) #14	GIP (ENSCHYG00000004425) #15	IGF2BP1 (ENSCHYG00000004387) #16	B4GALNT2 (ENSCHYG00000004351) #17	ABI3 (ENSCHYG00000004324) #18	ENSCHYG00000004303 #19	ZNF652 (ENSCHYG00000004272) #20	PHB1 (ENSCHYG00000004248) #21	NGFR (ENSCHYG00000004216) #22	NXPH3 (ENSCHYG00000004206) #23	SPOP (ENSCHYG00000004194) #24	FAM117A (ENSCHYG00000004129) #26	KAT7 (ENSCHYG00000003926) #27	ENSCHYG00000003867 #28	ENSCHYG00000003841	DLX4 (ENSCHYG00000003831) #29	DLX3 (ENSCHYG00000003824) #30	ITGA3 (ENSCHYG00000003740) #31	PDK2 (ENSCHYG00000003696) #32	SAMD14 (ENSCHYG00000003655) #33	PPP1R9B (ENSCHYG00000003627) #34	ENSCHYG00000003614 #36	SGCA (ENSCHYG00000003594) #35	COL1A1 (ENSCHYG00000003243) #37
Percora_a	ANCESTRAL SPECIES	2	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00960000190593	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36
Bovidae	ANCESTRAL SPECIES	2	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00960000190593	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36
Bovinae	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00960000190593	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36
Bos	ANCESTRAL SPECIES	1	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00960000190593	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36
Bos_a	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00960000190593	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35
Wild yak	MODERN SPECIES	319	HOXB9 (ENSBMUG00000000804) #7	HOXB13 (ENSBMUG00000000770) #9	ENSBMUG00000000753 #10	CALCOCO2 (ENSBMUG00000000720) #11	ENSBMUG00000000644	UBE2Z (ENSBMUG00000000624) #13	SNF8 (ENSBMUG00000000607) #14	GIP (ENSBMUG00000000594) #15	IGF2BP1 (ENSBMUG00000000549) #16	B4GALNT2 (ENSBMUG00000000477) #17	GNGT2 (ENSBMUG00000000436)	ABI3 (ENSBMUG00000000408) #18	PHOSPHO1 (ENSBMUG00000000370) #19	ZNF652 (ENSBMUG00000000351) #20	PHB1 (ENSBMUG00000000329) #21	NGFR (ENSBMUG00000000290) #22	NXPH3 (ENSBMUG00000000281) #23	SPOP (ENSBMUG00000000260) #24	SLC35B1 (ENSBMUG00000000165) #25	FAM117A (ENSBMUG00000022672) #26	KAT7 (ENSBMUG00000022650) #27	ENSBMUG00000022574 #28	ENSBMUG00000022551	DLX4 (ENSBMUG00000022545) #29	DLX3 (ENSBMUG00000022535) #30	ITGA3 (ENSBMUG00000022523) #31	PDK2 (ENSBMUG00000022453) #32	SAMD14 (ENSBMUG00000022417) #33	ENSBMUG00000022399 #34	ENSBMUG00000022389 #36	SGCA (ENSBMUG00000022382) #35
Domestic yak	MODERN SPECIES	10	HOXB9 (ENSBGRG00000021683) #7	HOXB13 (ENSBGRG00000021718) #9	TTLL6 (ENSBGRG00000021744) #10	CALCOCO2 (ENSBGRG00000021810) #11	ENSBGRG00000022156	UBE2Z (ENSBGRG00000022223) #13	SNF8 (ENSBGRG00000022296) #14	GIP (ENSBGRG00000022397) #15	IGF2BP1 (ENSBGRG00000022442) #16	B4GALNT2 (ENSBGRG00000022672) #17	ABI3 (ENSBGRG00000022961) #18	PHOSPHO1 (ENSBGRG00000023170) #19	ZNF652 (ENSBGRG00000023208) #20	ENSBGRG00000023290	PHB1 (ENSBGRG00000023342) #21	NGFR (ENSBGRG00000023500) #22	NXPH3 (ENSBGRG00000023572) #23	SPOP (ENSBGRG00000023618) #24	SLC35B1 (ENSBGRG00000023699) #25	FAM117A (ENSBGRG00000023813) #26	KAT7 (ENSBGRG00000004007) #27	ENSBGRG00000004724 #28	ENSBGRG00000004821	DLX4 (ENSBGRG00000004841) #29	DLX3 (ENSBGRG00000004899) #30	ITGA3 (ENSBGRG00000004960) #31	PDK2 (ENSBGRG00000005164) #32	SAMD14 (ENSBGRG00000005298) #33	PPP1R9B (ENSBGRG00000005352) #34	SGCA (ENSBGRG00000005458) #35	ENSBGRG00000005480 #36
Bos_b	ANCESTRAL SPECIES	15	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT01100000266401	ENSGT00960000190593	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36
Cow	MODERN SPECIES	10	HOXB9 (ENSBTAG00000054623) #7	HOXB13 (ENSBTAG00000014663) #9	TTLL6 (ENSBTAG00000009332) #10	CALCOCO2 (ENSBTAG00000007935) #11	ATP5MC1 (ENSBTAG00000018339)	UBE2Z (ENSBTAG00000018802) #13	SNF8 (ENSBTAG00000018803) #14	GIP (ENSBTAG00000005045) #15	IGF2BP1 (ENSBTAG00000011736) #16	B4GALNT2 (ENSBTAG00000009864) #17	GNGT2 (ENSBTAG00000047325)	ABI3 (ENSBTAG00000000032) #18	PHOSPHO1 (ENSBTAG00000000033) #19	ZNF652 (ENSBTAG00000001919) #20	PHB1 (ENSBTAG00000017120) #21	NGFR (ENSBTAG00000020979) #22	NXPH3 (ENSBTAG00000015293) #23	ENSBTAG00000054985	SPOP (ENSBTAG00000005824) #24	SLC35B1 (ENSBTAG00000006881) #25	FAM117A (ENSBTAG00000006886) #26	KAT7 (ENSBTAG00000018699) #27	ENSBTAG00000049677	ENSBTAG00000045805	DLX4 (ENSBTAG00000007353) #29	DLX3 (ENSBTAG00000017409) #30	ITGA3 (ENSBTAG00000019498) #31	PDK2 (ENSBTAG00000008744) #32	SAMD14 (ENSBTAG00000040521) #33	PPP1R9B (ENSBTAG00000049864) #34	H1-9 (ENSBTAG00000043979) #36
Hybrid Bos Indicus	MODERN SPECIES	10	HOXB8 (ENSBIXG00005029530)	HOXB9 (ENSBIXG00005029519) #7	HOXB13 (ENSBIXG00005029474) #9	ENSBIXG00005029447 #10	CALCOCO2 (ENSBIXG00005029366) #11	ENSBIXG00005029305	UBE2Z (ENSBIXG00005029277) #13	SNF8 (ENSBIXG00005007866) #14	GIP (ENSBIXG00005007892) #15	IGF2BP1 (ENSBIXG00005007917) #16	B4GALNT2 (ENSBIXG00005007929) #17	ABI3 (ENSBIXG00005007948) #18	PHOSPHO1 (ENSBIXG00005007996) #19	ZNF652 (ENSBIXG00005008029) #20	PHB1 (ENSBIXG00005008066) #21	NGFR (ENSBIXG00005008101) #22	NXPH3 (ENSBIXG00005008120) #23	SPOP (ENSBIXG00005008142) #24	FAM117A (ENSBIXG00005000136) #26	KAT7 (ENSBIXG00005008270) #27	ENSBIXG00005008304	ENSBIXG00005000149	DLX4 (ENSBIXG00005000154) #29	DLX3 (ENSBIXG00005008339) #30	ENSBIXG00005005679	ITGA3 (ENSBIXG00005008421) #31	PDK2 (ENSBIXG00005008472) #32	SAMD14 (ENSBIXG00005008496) #33	PPP1R9B (ENSBIXG00005008518) #34	ENSBIXG00005008532 #36	SGCA (ENSBIXG00005000219) #35
American bison	MODERN SPECIES	3101	HOXB9 (ENSBBBG00000021558) #7	HOXB13 (ENSBBBG00000021546) #9	TTLL6 (ENSBBBG00000021540) #10	CALCOCO2 (ENSBBBG00000005726) #11	ATP5MC1 (ENSBBBG00000021377) #12	UBE2Z (ENSBBBG00000021371) #13	SNF8 (ENSBBBG00000021356) #14	GIP (ENSBBBG00000021349) #15	IGF2BP1 (ENSBBBG00000021334) #16	B4GALNT2 (ENSBBBG00000021305) #17	GNGT2 (ENSBBBG00000021294)	ABI3 (ENSBBBG00000021279) #18	PHOSPHO1 (ENSBBBG00000005686) #19	ZNF652 (ENSBBBG00000007191) #20	PHB1 (ENSBBBG00000021247) #21	NGFR (ENSBBBG00000021212) #22	NXPH3 (ENSBBBG00000021209) #23	SPOP (ENSBBBG00000021196) #24	SLC35B1 (ENSBBBG00000021167) #25	FAM117A (ENSBBBG00000021150) #26	KAT7 (ENSBBBG00000021118) #27	ENSBBBG00000020856 #28	ENSBBBG00000020839	DLX4 (ENSBBBG00000020836) #29	DLX3 (ENSBBBG00000020830) #30	ITGA3 (ENSBBBG00000020813) #31	PDK2 (ENSBBBG00000005588) #32	SAMD14 (ENSBBBG00000005584) #33	ENSBBBG00000020689 #34	SGCA (ENSBBBG00000005577) #35	ENSBBBG00000020655 #36
Caprinae	ANCESTRAL SPECIES	1	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT01100000264599	ENSGT00390000007843.g.a #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37	ENSGT00390000014943
Rambouillet Sheep	MODERN SPECIES	2	HOXB13 (ENSOARG00020022195) #9	SNF8 (ENSOARG00020022227) #14	ENSOARG00020022258 #10	CALCOCO2 (ENSOARG00020022295) #11	ATP5MC1 (ENSOARG00020022590)	UBE2Z (ENSOARG00020022664) #13	GIP (ENSOARG00020022695) #15	IGF2BP1 (ENSOARG00020022766) #16	ENSOARG00020022839	B4GALNT2 (ENSOARG00020022870) #17	GNGT2 (ENSOARG00020009965)	ABI3 (ENSOARG00020010038) #18	PHOSPHO1 (ENSOARG00020010143) #19	ZNF652 (ENSOARG00020010202) #20	PHB (ENSOARG00020010257) #21	NGFR (ENSOARG00020010364) #22	NXPH3 (ENSOARG00020010437) #23	SPOP (ENSOARG00020010471) #24	SLC35B1 (ENSOARG00020010577) #25	FAM117A (ENSOARG00020010734) #26	KAT7 (ENSOARG00020010890) #27	ENSOARG00020011194 #28	DLX4 (ENSOARG00020011261) #29	DLX3 (ENSOARG00020011314) #30	ITGA3 (ENSOARG00020011374) #31	PDK2 (ENSOARG00020011584) #32	SAMD14 (ENSOARG00020011664) #33	PPP1R9B (ENSOARG00020011862) #34	SGCA (ENSOARG00020012004) #35	ENSOARG00020012345 #36	ENSOARG00020012400
Goat	MODERN SPECIES	10	HOXB13 (ENSCHIG00000026703) #9	TTLL6 (ENSCHIG00000022654) #10	CALCOCO2 (ENSCHIG00000025313) #11	ENSCHIG00000016881	UBE2Z (ENSCHIG00000003883) #13	ENSCHIG00000020962	SNF8 (ENSCHIG00000014794) #14	GIP (ENSCHIG00000010936) #15	IGF2BP1 (ENSCHIG00000022316) #16	B4GALNT2 (ENSCHIG00000013924) #17	GNGT2 (ENSCHIG00000022700)	ABI3 (ENSCHIG00000025692) #18	PHOSPHO1 (ENSCHIG00000020131) #19	ZNF652 (ENSCHIG00000025825) #20	PHB1 (ENSCHIG00000012405) #21	NGFR (ENSCHIG00000019080) #22	NXPH3 (ENSCHIG00000027224) #23	SPOP (ENSCHIG00000016662) #24	SLC35B1 (ENSCHIG00000017359) #25	FAM117A (ENSCHIG00000012977) #26	KAT7 (ENSCHIG00000025815) #27	ENSCHIG00000013763 #28	DLX4 (ENSCHIG00000010948) #29	DLX3 (ENSCHIG00000010709) #30	ITGA3 (ENSCHIG00000015227) #31	PDK2 (ENSCHIG00000022189) #32	SAMD14 (ENSCHIG00000018967) #33	PPP1R9B (ENSCHIG00000025841) #34	SGCA (ENSCHIG00000014532) #35	COL1A1 (ENSCHIG00000021319) #37	ENSCHIG00000018450
Siberian musk deer	MODERN SPECIES	1210	CALCOCO2 (ENSMMSG00000024509) #11	ATP5MC1 (ENSMMSG00000024506) #12	UBE2Z (ENSMMSG00000024505) #13	ENSMMSG00000024504 #14	GIP (ENSMMSG00000024503) #15	IGF2BP1 (ENSMMSG00000024501) #16	ENSMMSG00000024500	B4GALNT2 (ENSMMSG00000024496) #17	ENSMMSG00000024495	GNGT2 (ENSMMSG00000024493)	ABI3 (ENSMMSG00000024491) #18	PHOSPHO1 (ENSMMSG00000024489) #19	ZNF652 (ENSMMSG00000024488) #20	PHB1 (ENSMMSG00000024486) #21	ENSMMSG00000024484	NGFR (ENSMMSG00000024482) #22	NXPH3 (ENSMMSG00000024480) #23	ENSMMSG00000024479 #24	SLC35B1 (ENSMMSG00000024476) #25	FAM117A (ENSMMSG00000024473) #26	KAT7 (ENSMMSG00000024468) #27	TAC4 (ENSMMSG00000024465) #28	DLX4 (ENSMMSG00000024462) #29	DLX3 (ENSMMSG00000024461) #30	ITGA3 (ENSMMSG00000024456) #31	PDK2 (ENSMMSG00000024453) #32	SAMD14 (ENSMMSG00000024451) #33	PPP1R9B (ENSMMSG00000024450) #34	ENSMMSG00000024449 #36	SGCA (ENSMMSG00000024448) #35	COL1A1 (ENSMMSG00000024445) #37
Camelidae	ANCESTRAL SPECIES	110																ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Arabian camel	MODERN SPECIES	7	ENSCDRG00005018754	CCL8 (ENSCDRG00005018771)	ENSCDRG00005018782	TMEM132E (ENSCDRG00005018809)	CCT6B (ENSCDRG00005018987)	ZNF830 (ENSCDRG00005019235)	LIG3 (ENSCDRG00005019260)	RFFL (ENSCDRG00005019298)	RAD51D (ENSCDRG00005008720)	FNDC8 (ENSCDRG00005008856)	NLE1 (ENSCDRG00005008920)	UNC45B (ENSCDRG00005009329)	ENSCDRG00005009987	ENSCDRG00005010031	ENSCDRG00005010071	NGFR (ENSCDRG00005010099) #22	NXPH3 (ENSCDRG00005010150) #23	SPOP (ENSCDRG00005010198) #24	SLC35B1 (ENSCDRG00005010268) #25	FAM117A (ENSCDRG00005010358) #26	KAT7 (ENSCDRG00005010423) #27	TAC4 (ENSCDRG00005010878) #28	DLX4 (ENSCDRG00005011355) #29	DLX3 (ENSCDRG00005011379) #30	ITGA3 (ENSCDRG00005011434) #31	PDK2 (ENSCDRG00005011691) #32	SAMD14 (ENSCDRG00005011730) #33	PPP1R9B (ENSCDRG00005011814) #34	SGCA (ENSCDRG00005011958) #35	ENSCDRG00005012081 #36	COL1A1 (ENSCDRG00005012316) #37
Suina	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Pig	MODERN SPECIES	3	UBE2Z (ENSSSCG00000025638) #13	SNF8 (ENSSSCG00000021461) #14	GIP (ENSSSCG00000026330) #15	IGF2BP1 (ENSSSCG00000023128) #16	ENSSSCG00000030269 #17	ENSSSCG00000033286 #19	ENSSSCG00000027677 #18	ENSSSCG00000040110	ENSSSCG00000038434	ENSSSCG00000048918 #17	ENSSSCG00000045794	ENSSSCG00000035224 #18	ENSSSCG00000026701 #19	ZNF652 (ENSSSCG00000017546) #20	PHB1 (ENSSSCG00000017549) #21	NGFR (ENSSSCG00000017548) #22	NXPH3 (ENSSSCG00000017552) #23	ENSSSCG00000033501	SPOP (ENSSSCG00000020796) #24	SLC35B1 (ENSSSCG00000033731) #25	FAM117A (ENSSSCG00000017551) #26	KAT7 (ENSSSCG00000017553) #27	TAC4 (ENSSSCG00000038057) #28	DLX4 (ENSSSCG00000034653) #29	DLX3 (ENSSSCG00000017589) #30	ITGA3 (ENSSSCG00000017578) #31	PDK2 (ENSSSCG00000027198) #32	SAMD14 (ENSSSCG00000017585) #33	PPP1R9B (ENSSSCG00000017584) #34	SGCA (ENSSSCG00000017583) #35	ENSSSCG00000031307 #36
Chacoan peccary	MODERN SPECIES	145	HOXB9 (ENSCWAG00000022065) #7	HOXB13 (ENSCWAG00000022063) #9	TTLL6 (ENSCWAG00000022059) #10	CALCOCO2 (ENSCWAG00000022056) #11	ATP5MC1 (ENSCWAG00000022052) #12	UBE2Z (ENSCWAG00000022050) #13	SNF8 (ENSCWAG00000022048) #14	GIP (ENSCWAG00000022046) #15	IGF2BP1 (ENSCWAG00000022044) #16	ENSCWAG00000022041	GNGT2 (ENSCWAG00000022039)	ABI3 (ENSCWAG00000022038) #18	PHOSPHO1 (ENSCWAG00000022036) #19	ZNF652 (ENSCWAG00000022035) #20	PHB1 (ENSCWAG00000022033) #21	NGFR (ENSCWAG00000022030) #22	NXPH3 (ENSCWAG00000022028) #23	ENSCWAG00000022027	SPOP (ENSCWAG00000022026) #24	SLC35B1 (ENSCWAG00000022025) #25	FAM117A (ENSCWAG00000022023) #26	ENSCWAG00000022022	KAT7 (ENSCWAG00000022020) #27	ENSCWAG00000022012 #28	DLX4 (ENSCWAG00000022011) #29	DLX3 (ENSCWAG00000022010) #30	ITGA3 (ENSCWAG00000022008) #31	PDK2 (ENSCWAG00000022006) #32	SAMD14 (ENSCWAG00000022002) #33	ENSCWAG00000022001 #34	ENSCWAG00000022000 #34
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00990000209473	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Carnivora	ANCESTRAL SPECIES	9	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00990000209473	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Caniformia	ANCESTRAL SPECIES	6	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00990000209473	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00990000209473	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a.b	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35
Ursidae	ANCESTRAL SPECIES	18	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a.b	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35
Giant Panda	MODERN SPECIES	4	ENSAMEG00000026258	HOXB13 (ENSAMEG00000026873) #9	ENSAMEG00000005000 #10	CALCOCO2 (ENSAMEG00000005015) #11	ATP5MC1 (ENSAMEG00000005038)	UBE2Z (ENSAMEG00000005049) #13	SNF8 (ENSAMEG00000005062) #14	GIP (ENSAMEG00000005081) #15	IGF2BP1 (ENSAMEG00000005087) #16	B4GALNT2 (ENSAMEG00000005108) #17	GNGT2 (ENSAMEG00000005139)	ABI3 (ENSAMEG00000005141) #18	PHOSPHO1 (ENSAMEG00000031233) #19	ZNF652 (ENSAMEG00000012387) #20	PHB1 (ENSAMEG00000012364) #21	NGFR (ENSAMEG00000012352) #22	NXPH3 (ENSAMEG00000026422) #23	ENSAMEG00000027101	SPOP (ENSAMEG00000012318) #24	SLC35B1 (ENSAMEG00000012292) #25	FAM117A (ENSAMEG00000012286) #26	KAT7 (ENSAMEG00000012243) #27	TAC4 (ENSAMEG00000030850) #28	DLX4 (ENSAMEG00000012238) #29	DLX3 (ENSAMEG00000030071) #30	ITGA3 (ENSAMEG00000012157) #31	PDK2 (ENSAMEG00000012109) #32	SAMD14 (ENSAMEG00000012100) #33	PPP1R9B (ENSAMEG00000012080) #34	ENSAMEG00000012076 #36	SGCA (ENSAMEG00000012057) #35
Ursus	ANCESTRAL SPECIES	67	ENSGT00940000161529	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a.b	ENSGT00940000161380 #18	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35
American black bear	MODERN SPECIES	2425																NGFR (ENSUAMG00000018493) #22	NXPH3 (ENSUAMG00000018495) #23	ENSUAMG00000018496	SPOP (ENSUAMG00000018497) #24
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720	ENSGT00940000159091 #13	ENSGT00990000209473	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a.b	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
American mink	MODERN SPECIES	92	HOXB13 (ENSNVIG00000006117) #9	TTLL6 (ENSNVIG00000006132) #10	CALCOCO2 (ENSNVIG00000006167) #11	ENSNVIG00000006295	UBE2Z (ENSNVIG00000006316) #13	ENSNVIG00000006339	ENSNVIG00000006352 #14	GIP (ENSNVIG00000006361) #15	IGF2BP1 (ENSNVIG00000006377) #16	B4GALNT2 (ENSNVIG00000006432) #17	GNGT2 (ENSNVIG00000006461)	ABI3 (ENSNVIG00000006479) #18	PHOSPHO1 (ENSNVIG00000006507) #19	ZNF652 (ENSNVIG00000006521) #20	PHB1 (ENSNVIG00000006553) #21	NGFR (ENSNVIG00000006576) #22	NXPH3 (ENSNVIG00000006600) #23	SPOP (ENSNVIG00000006608) #24	SLC35B1 (ENSNVIG00000006645) #25	FAM117A (ENSNVIG00000006664) #26	KAT7 (ENSNVIG00000006694) #27	TAC4 (ENSNVIG00000006873) #28	DLX4 (ENSNVIG00000006893) #29	DLX3 (ENSNVIG00000006907) #30	ITGA3 (ENSNVIG00000006930) #31	PDK2 (ENSNVIG00000007031) #32	SAMD14 (ENSNVIG00000007053) #33	PPP1R9B (ENSNVIG00000007068) #34	SGCA (ENSNVIG00000007083) #35	ENSNVIG00000007112 #36	COL1A1 (ENSNVIG00000007125) #37
Ferret	MODERN SPECIES	270	HOXB8 (ENSMPUG00000015329)	HOXB9 (ENSMPUG00000015330) #7	HOXB13 (ENSMPUG00000015332) #9	TTLL6 (ENSMPUG00000015335) #10	CALCOCO2 (ENSMPUG00000015338) #11	ENSMPUG00000015341	UBE2Z (ENSMPUG00000015342) #13	SNF8 (ENSMPUG00000015356) #14	GIP (ENSMPUG00000015357) #15	IGF2BP1 (ENSMPUG00000015358) #16	B4GALNT2 (ENSMPUG00000015373) #17	ABI3 (ENSMPUG00000015374) #18	PHOSPHO1 (ENSMPUG00000015375) #19	ZNF652 (ENSMPUG00000015376) #20	PHB1 (ENSMPUG00000015381) #21	NGFR (ENSMPUG00000015384) #22	ENSMPUG00000015387	NXPH3 (ENSMPUG00000015386) #23	SPOP (ENSMPUG00000015389) #24	SLC35B1 (ENSMPUG00000015392) #25	FAM117A (ENSMPUG00000015406) #26	KAT7 (ENSMPUG00000015409) #27	DLX4 (ENSMPUG00000015410) #29	DLX3 (ENSMPUG00000015413) #30	ITGA3 (ENSMPUG00000015414) #31	PDK2 (ENSMPUG00000015416) #32	SAMD14 (ENSMPUG00000015417) #33	PPP1R9B (ENSMPUG00000015418) #34	SGCA (ENSMPUG00000015419) #35	COL1A1 (ENSMPUG00000015438) #37	TMEM92 (ENSMPUG00000015441)
Canidae	ANCESTRAL SPECIES	2	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.c	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.c	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Dog	MODERN SPECIES	37	HOXB9 (ENSCAFG00845009956) #7	HOXB13 (ENSCAFG00845009992) #9	TTLL6 (ENSCAFG00845010017) #10	CALCOCO2 (ENSCAFG00845010119) #11	ATP5MC1 (ENSCAFG00845010336)	UBE2Z (ENSCAFG00845010395) #13	SNF8 (ENSCAFG00845010455) #14	GIP (ENSCAFG00845010532) #15	IGF2BP1 (ENSCAFG00845010596) #16	B4GALNT2 (ENSCAFG00845010693) #17	ENSCAFG00845010742 #21	ABI3 (ENSCAFG00845010830) #18	PHOSPHO1 (ENSCAFG00845010884) #19	PHB1 (ENSCAFG00845010966) #21	ZNF652 (ENSCAFG00845011079) #20	NGFR (ENSCAFG00845011173) #22	NXPH3 (ENSCAFG00845011191) #23	SPOP (ENSCAFG00845011227) #24	SLC35B1 (ENSCAFG00845011328) #25	FAM117A (ENSCAFG00845011405) #26	KAT7 (ENSCAFG00845011515) #27	TAC4 (ENSCAFG00845011705) #28	DLX4 (ENSCAFG00845011727) #29	DLX3 (ENSCAFG00845011753) #30	ITGA3 (ENSCAFG00845011823) #31	PDK2 (ENSCAFG00845012105) #32	SAMD14 (ENSCAFG00845012179) #33	PPP1R9B (ENSCAFG00845012234) #34	SGCA (ENSCAFG00845012386) #35	ENSCAFG00845012468 #36	COL1A1 (ENSCAFG00845012504) #37
Dingo	MODERN SPECIES	150	HOXB13 (ENSCAFG00020023319) #9	TTLL6 (ENSCAFG00020023324) #10	CALCOCO2 (ENSCAFG00020023334) #11	ENSCAFG00020023349	UBE2Z (ENSCAFG00020023351) #13	SNF8 (ENSCAFG00020023354) #14	GIP (ENSCAFG00020023360) #15	IGF2BP1 (ENSCAFG00020023369) #16	ENSCAFG00020023382	B4GALNT2 (ENSCAFG00020023386) #17	GNGT2 (ENSCAFG00020023405)	ABI3 (ENSCAFG00020023410) #18	PHOSPHO1 (ENSCAFG00020023419) #19	ZNF652 (ENSCAFG00020023420) #20	ENSCAFG00020023425 #21	NGFR (ENSCAFG00020023430) #22	NXPH3 (ENSCAFG00020023441) #23	SPOP (ENSCAFG00020023443) #24	SLC35B1 (ENSCAFG00020023446) #25	FAM117A (ENSCAFG00020023448) #26	KAT7 (ENSCAFG00020023453) #27	ENSCAFG00020023469 #28	DLX4 (ENSCAFG00020023471) #29	DLX3 (ENSCAFG00020023473) #30	ITGA3 (ENSCAFG00020023474) #31	PDK2 (ENSCAFG00020023478) #32	SAMD14 (ENSCAFG00020023482) #33	PPP1R9B (ENSCAFG00020023485) #34	SGCA (ENSCAFG00020023493) #35	ENSCAFG00020023495 #36	COL1A1 (ENSCAFG00020023500) #37
Red fox	MODERN SPECIES	20	HOXB13 (ENSVVUG00000003382) #9	TTLL6 (ENSVVUG00000003393) #10	CALCOCO2 (ENSVVUG00000003399) #11	ATP5MC1 (ENSVVUG00000003411)	UBE2Z (ENSVVUG00000003424) #13	SNF8 (ENSVVUG00000003434) #14	GIP (ENSVVUG00000003440) #15	IGF2BP1 (ENSVVUG00000003451) #16	ENSVVUG00000003456 #21	B4GALNT2 (ENSVVUG00000003458) #17	GNGT2 (ENSVVUG00000003489)	ABI3 (ENSVVUG00000003493) #18	PHOSPHO1 (ENSVVUG00000003505) #19	ZNF652 (ENSVVUG00000003513) #20	ENSVVUG00000003547 #21	NGFR (ENSVVUG00000003610) #22	NXPH3 (ENSVVUG00000003626) #23	SPOP (ENSVVUG00000003631) #24	SLC35B1 (ENSVVUG00000003665) #25	FAM117A (ENSVVUG00000003675) #26	KAT7 (ENSVVUG00000003710) #27	DLX4 (ENSVVUG00000004191) #29	DLX3 (ENSVVUG00000004195) #30	ITGA3 (ENSVVUG00000004205) #31	PDK2 (ENSVVUG00000004251) #32	SAMD14 (ENSVVUG00000004274) #33	PPP1R9B (ENSVVUG00000004297) #34	SGCA (ENSVVUG00000004312) #35	ENSVVUG00000004316 #36	COL1A1 (ENSVVUG00000004354) #37	TMEM92 (ENSVVUG00000004742)
Felidae	ANCESTRAL SPECIES	8	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.f.a	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37
Panthera	ANCESTRAL SPECIES	14	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.f.a	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37	ENSGT00390000014943
Tiger	MODERN SPECIES	230	HOXB5 (ENSPTIG00000014877)	HOXB7 (ENSPTIG00000014471)	ENSPTIG00000013326 #9	TTLL6 (ENSPTIG00000010570) #10	CALCOCO2 (ENSPTIG00000020855) #11	ENSPTIG00000018508	UBE2Z (ENSPTIG00000017872) #13	SNF8 (ENSPTIG00000017017) #14	GIP (ENSPTIG00000016604) #15	IGF2BP1 (ENSPTIG00000013291) #16	B4GALNT2 (ENSPTIG00000012803) #17	GNGT2 (ENSPTIG00000011802)	ABI3 (ENSPTIG00000011177) #18	ZNF652 (ENSPTIG00000010615) #20	PHB1 (ENSPTIG00000008349) #21	ENSPTIG00000005161 #22	NXPH3 (ENSPTIG00000000016) #23	SPOP (ENSPTIG00000019935) #24	SLC35B1 (ENSPTIG00000019637) #25	ENSPTIG00000019125	FAM117A (ENSPTIG00000018860) #26	KAT7 (ENSPTIG00000011639) #27	TAC4 (ENSPTIG00000009789) #28	DLX4 (ENSPTIG00000008632) #29	ENSPTIG00000008120 #30
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.f.a	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37	ENSGT00390000014943
lion	MODERN SPECIES	14	ENSPLOG00000021606	HOXB13 (ENSPLOG00000021590) #9	TTLL6 (ENSPLOG00000021506) #10	CALCOCO2 (ENSPLOG00000021469) #11	ENSPLOG00000021422	UBE2Z (ENSPLOG00000021399) #13	SNF8 (ENSPLOG00000021370) #14	GIP (ENSPLOG00000021311) #15	IGF2BP1 (ENSPLOG00000021207) #16	B4GALNT2 (ENSPLOG00000021030) #17	GNGT2 (ENSPLOG00000020997)	ABI3 (ENSPLOG00000020951) #18	PHOSPHO1 (ENSPLOG00000020920) #19	ZNF652 (ENSPLOG00000020894) #20	PHB1 (ENSPLOG00000020854) #21	NGFR (ENSPLOG00000020808) #22	NXPH3 (ENSPLOG00000020789) #23	SPOP (ENSPLOG00000020757) #24	FAM117A (ENSPLOG00000020662) #26	KAT7 (ENSPLOG00000020520) #27	TAC4 (ENSPLOG00000020433) #28	DLX4 (ENSPLOG00000020407) #29	DLX3 (ENSPLOG00000020385) #30	ITGA3 (ENSPLOG00000020140) #31	PDK2 (ENSPLOG00000020045) #32	SAMD14 (ENSPLOG00000019994) #33	PPP1R9B (ENSPLOG00000019903) #34	SGCA (ENSPLOG00000019756) #35	COL1A1 (ENSPLOG00000019378) #37	TMEM92 (ENSPLOG00000019296)	XYLT2 (ENSPLOG00000019251)
leopard	MODERN SPECIES	67	HOXB9 (ENSPPRG00000001578) #7	HOXB13 (ENSPPRG00000001633) #9	TTLL6 (ENSPPRG00000003004) #10	CALCOCO2 (ENSPPRG00000004550) #11	ENSPPRG00000005588	UBE2Z (ENSPPRG00000005626) #13	ENSPPRG00000007008 #14	GIP (ENSPPRG00000007119) #15	IGF2BP1 (ENSPPRG00000008067) #16	B4GALNT2 (ENSPPRG00000008636) #17	GNGT2 (ENSPPRG00000009442)	ABI3 (ENSPPRG00000009966) #18	PHOSPHO1 (ENSPPRG00000010125) #19	ZNF652 (ENSPPRG00000011680) #20	PHB1 (ENSPPRG00000012902) #21	NGFR (ENSPPRG00000013448) #22	NXPH3 (ENSPPRG00000013606) #23	SPOP (ENSPPRG00000014269) #24	SLC35B1 (ENSPPRG00000014682) #25	FAM117A (ENSPPRG00000017338) #26	KAT7 (ENSPPRG00000024404) #27	DLX4 (ENSPPRG00000023879) #29	DLX3 (ENSPPRG00000023791) #30	ITGA3 (ENSPPRG00000000879) #31	PDK2 (ENSPPRG00000001480) #32	SAMD14 (ENSPPRG00000002112) #33	PPP1R9B (ENSPPRG00000002645) #34	SGCA (ENSPPRG00000006346) #35	COL1A1 (ENSPPRG00000006898) #37	TMEM92 (ENSPPRG00000007766)	XYLT2 (ENSPPRG00000009115)
Cat	MODERN SPECIES	245	HOXB9 (ENSFCAG00000035234) #7	HOXB13 (ENSFCAG00000002120) #9	TTLL6 (ENSFCAG00000010617) #10	CALCOCO2 (ENSFCAG00000010622) #11	ENSFCAG00000002344	UBE2Z (ENSFCAG00000045462) #13	SNF8 (ENSFCAG00000008944) #14	GIP (ENSFCAG00000008946) #15	IGF2BP1 (ENSFCAG00000002454) #16	B4GALNT2 (ENSFCAG00000018523) #17	GNGT2 (ENSFCAG00000039268)	ABI3 (ENSFCAG00000018571) #18	PHOSPHO1 (ENSFCAG00000000113) #19	ZNF652 (ENSFCAG00000000115) #20	PHB1 (ENSFCAG00000042904) #21	NGFR (ENSFCAG00000046296) #22	NXPH3 (ENSFCAG00000002636) #23	SPOP (ENSFCAG00000002637) #24	FAM117A (ENSFCAG00000002639) #26	KAT7 (ENSFCAG00000002640) #27	TAC4 (ENSFCAG00000002641) #28	DLX4 (ENSFCAG00000019055) #29	DLX3 (ENSFCAG00000044465) #30	ITGA3 (ENSFCAG00000004558) #31	PDK2 (ENSFCAG00000009633) #32	SAMD14 (ENSFCAG00000039819) #33	PPP1R9B (ENSFCAG00000026527) #34	H1-9 (ENSFCAG00000053017) #36	SGCA (ENSFCAG00000004560) #35	COL1A1 (ENSFCAG00000004564) #37	TMEM92 (ENSFCAG00000042623)
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.b	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Equus	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.b	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Horse	MODERN SPECIES	2	HOXB5 (ENSECAG00000012439)	HOXB8 (ENSECAG00000034473)	HOXB9 (ENSECAG00000036001) #7	HOXB13 (ENSECAG00000013619) #9	TTLL6 (ENSECAG00000014417) #10	ENSECAG00000059603 #10	CALCOCO2 (ENSECAG00000015498) #11	ATP5MC1 (ENSECAG00000019908)	UBE2Z (ENSECAG00000021160) #13	SNF8 (ENSECAG00000022092) #14	ENSECAG00000046431	GIP (ENSECAG00000008172) #15	IGF2BP1 (ENSECAG00000009723) #16	B4GALNT2 (ENSECAG00000013354) #17	GNGT2 (ENSECAG00000016054)	ABI3 (ENSECAG00000016070) #22	PHOSPHO1 (ENSECAG00000016583) #19	ZNF652 (ENSECAG00000016968) #20	PHB1 (ENSECAG00000017769) #21	NXPH3 (ENSECAG00000017359) #23	SPOP (ENSECAG00000018287) #24	FAM117A (ENSECAG00000008346) #26	KAT7 (ENSECAG00000010150) #27	TAC4 (ENSECAG00000014863) #28	DLX4 (ENSECAG00000033703) #29	DLX3 (ENSECAG00000014884) #30	ITGA3 (ENSECAG00000015760) #31	PDK2 (ENSECAG00000022822) #32	SAMD14 (ENSECAG00000008063) #33	PPP1R9B (ENSECAG00000011107) #34	SGCA (ENSECAG00000047470) #35
Donkey	MODERN SPECIES	4	ENSEASG00005037375 #10	CALCOCO2 (ENSEASG00005000430) #11	ENSEASG00005026420 #11	ENSEASG00005032484	UBE2Z (ENSEASG00005000404) #13	ENSEASG00005030756	SNF8 (ENSEASG00005000402) #14	GIP (ENSEASG00005000385) #15	IGF2BP1 (ENSEASG00005000301) #16	B4GALNT2 (ENSEASG00005000271) #17	ENSEASG00005037167	ABI3 (ENSEASG00005000248) #18	PHOSPHO1 (ENSEASG00005036161) #19	ZNF652 (ENSEASG00005000231) #20	PHB1 (ENSEASG00005000226) #21	NGFR (ENSEASG00005000062) #22	NXPH3 (ENSEASG00005037665) #23	SPOP (ENSEASG00005018636) #24	SLC35B1 (ENSEASG00005018635) #25	FAM117A (ENSEASG00005018634) #26	KAT7 (ENSEASG00005018633) #27	ENSEASG00005027650 #28	DLX4 (ENSEASG00005035049) #29	DLX3 (ENSEASG00005031122) #30	ITGA3 (ENSEASG00005018627) #31	PDK2 (ENSEASG00005018626) #32	SAMD14 (ENSEASG00005018625) #33	PPP1R9B (ENSEASG00005018624) #34	SGCA (ENSEASG00005018622) #35	ENSEASG00005026086 #36	COL1A1 (ENSEASG00005018620) #37
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.b	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36
Megabat	MODERN SPECIES	1667																NGFR (ENSPVAG00000004370) #22	NXPH3 (ENSPVAG00000004374) #23	SPOP (ENSPVAG00000004376) #24	SLC35B1 (ENSPVAG00000004377) #25	FAM117A (ENSPVAG00000004378) #26
Microchiroptera	ANCESTRAL SPECIES		ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000159720.b	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35
Microbat	MODERN SPECIES	1191	TTLL6 (ENSMLUG00000014065) #10	CALCOCO2 (ENSMLUG00000014073) #11	ENSMLUG00000011738	UBE2Z (ENSMLUG00000011750) #13	SNF8 (ENSMLUG00000011769) #14	GIP (ENSMLUG00000011785) #15	ENSMLUG00000016891 #16	B4GALNT2 (ENSMLUG00000012945) #17	ENSMLUG00000024310	GNGT2 (ENSMLUG00000012951)	ABI3 (ENSMLUG00000012953) #18	ENSMLUG00000005756 #19	ZNF652 (ENSMLUG00000012963) #20	PHB1 (ENSMLUG00000008203) #21	ENSMLUG00000023412	NGFR (ENSMLUG00000030141) #22	NXPH3 (ENSMLUG00000008072) #23	ENSMLUG00000011013 #24	SLC35B1 (ENSMLUG00000011047) #25	FAM117A (ENSMLUG00000011067) #26	KAT7 (ENSMLUG00000011077) #27
Greater horseshoe bat	MODERN SPECIES	13	TTLL6 (ENSRFEG00010021801) #10	ENSRFEG00010021798	CALCOCO2 (ENSRFEG00010021784) #11	ENSRFEG00010021766	UBE2Z (ENSRFEG00010021755) #13	SNF8 (ENSRFEG00010021745) #14	GIP (ENSRFEG00010021740) #15	IGF2BP1 (ENSRFEG00010021720) #16	ENSRFEG00010021705	B4GALNT2 (ENSRFEG00010021694) #17	GNGT2 (ENSRFEG00010021682)	ABI3 (ENSRFEG00010021659) #18	PHOSPHO1 (ENSRFEG00010021635) #19	ZNF652 (ENSRFEG00010021620) #20	ENSRFEG00010021606 #21	NGFR (ENSRFEG00010021593) #22	NXPH3 (ENSRFEG00010021588) #23	ENSRFEG00010021578	SPOP (ENSRFEG00010021569) #24	SLC35B1 (ENSRFEG00010021552) #25	FAM117A (ENSRFEG00010021534) #26	KAT7 (ENSRFEG00010021504) #27	TAC4 (ENSRFEG00010021468) #28	DLX4 (ENSRFEG00010021455) #29	DLX3 (ENSRFEG00010021445) #30	ITGA3 (ENSRFEG00010021408) #31	PDK2 (ENSRFEG00010021373) #32	SAMD14 (ENSRFEG00010021360) #33	PPP1R9B (ENSRFEG00010021343) #34	ENSRFEG00010021332 #36	SGCA (ENSRFEG00010021307) #35
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37
Xenarthra	ANCESTRAL SPECIES	257		ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22
Armadillo	MODERN SPECIES	1251		HOXB9 (ENSDNOG00000024386) #7	HOXB13 (ENSDNOG00000015177) #9	TTLL6 (ENSDNOG00000013498) #10	ENSDNOG00000016284 #11	ATP5MC1 (ENSDNOG00000011376) #12	UBE2Z (ENSDNOG00000002744) #13	SNF8 (ENSDNOG00000002745) #14	GIP (ENSDNOG00000006792) #15	IGF2BP1 (ENSDNOG00000006801) #16	B4GALNT2 (ENSDNOG00000040157) #17	ABI3 (ENSDNOG00000023604) #18	PHOSPHO1 (ENSDNOG00000018968) #19	ZNF652 (ENSDNOG00000016747) #20	PHB1 (ENSDNOG00000038770) #21	NGFR (ENSDNOG00000043405) #22
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37
Tenrec	MODERN SPECIES	8479															ENSETEG00000003499	ENSETEG00000003503 #22
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00390000015220 #28	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37
Elephant	MODERN SPECIES	310	ENSLAFG00000026602	TTLL6 (ENSLAFG00000003368) #10	ENSLAFG00000027009	CALCOCO2 (ENSLAFG00000016693) #11	ATP5MC1 (ENSLAFG00000004537) #12	UBE2Z (ENSLAFG00000006606) #13	SNF8 (ENSLAFG00000006599) #14	GIP (ENSLAFG00000004536) #15	IGF2BP1 (ENSLAFG00000002048) #16	B4GALNT2 (ENSLAFG00000010563) #17	GNGT2 (ENSLAFG00000025568)	ABI3 (ENSLAFG00000001493) #18	PHOSPHO1 (ENSLAFG00000031084) #19	ZNF652 (ENSLAFG00000010084) #20	PHB1 (ENSLAFG00000010087) #21	NGFR (ENSLAFG00000003584) #22	NXPH3 (ENSLAFG00000003309) #23	SPOP (ENSLAFG00000003311) #24	SLC35B1 (ENSLAFG00000002794) #25	FAM117A (ENSLAFG00000029848) #26	KAT7 (ENSLAFG00000002796) #27	TAC4 (ENSLAFG00000015318) #28	DLX4 (ENSLAFG00000013453) #29	DLX3 (ENSLAFG00000028511) #30	ITGA3 (ENSLAFG00000002548) #31	PDK2 (ENSLAFG00000031711) #32	SAMD14 (ENSLAFG00000021674) #33	PPP1R9B (ENSLAFG00000023325) #34	ENSLAFG00000030707 #36	SGCA (ENSLAFG00000022047) #35	COL1A1 (ENSLAFG00000003435) #37
Hyrax	MODERN SPECIES	4166																NGFR (ENSPCAG00000014486) #22	NXPH3 (ENSPCAG00000014517) #23	SPOP (ENSPCAG00000014534) #24
Marsupialia	ANCESTRAL SPECIES	13	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00730000111487 #36	ENSGT00940000156584 #37
Marsupialia_b	ANCESTRAL SPECIES	16	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00390000005121 #15	ENSGT00940000160427 #16	ENSGT00390000006679.b.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00730000111487 #36	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37
Diprotodontia	ANCESTRAL SPECIES	9	ENSGT00940000161529	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091 #13	ENSGT00390000007843 #14	ENSGT00940000160427 #16	ENSGT00390000006679.b.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37	ENSGT00390000014943
Diprotodontia_a	ANCESTRAL SPECIES	11	ENSGT00940000161529	ENSGT00940000161386 #7	ENSGT00940000159029 #9	ENSGT00940000161434 #10	ENSGT00950000183025.a #11	ENSGT00940000154298.a.b #12	ENSGT00940000159091.e #13	ENSGT00390000007843 #14	ENSGT00940000160427 #16	ENSGT00390000006679.b.b #17	ENSGT01100000263525.b.a	ENSGT00940000161380 #18	ENSGT00390000007741.a #19	ENSGT00940000157416 #20	ENSGT00950000183070.a.b #21	ENSGT00730000110974 #22	ENSGT00950000182883.a.a #23	ENSGT00950000185094	ENSGT00940000154376.b #24	ENSGT00940000157900 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157744 #27	ENSGT00940000162259 #29	ENSGT00940000158951 #30	ENSGT00940000157746 #31	ENSGT01030000234646.B.a.a.a.a #32	ENSGT00940000160279 #33	ENSGT00940000158833 #34	ENSGT00390000005672.a.a #35	ENSGT00940000156584 #37	ENSGT00390000014943
koala	MODERN SPECIES	67	HOXB9 (ENSPCIG00000030251) #7	HOXB13 (ENSPCIG00000030249) #9	TTLL6 (ENSPCIG00000030247) #10	CALCOCO2 (ENSPCIG00000010432) #11	ATP5MC1 (ENSPCIG00000013306) #12	ENSPCIG00000013305 #13	SNF8 (ENSPCIG00000013302) #14	IGF2BP1 (ENSPCIG00000013111) #16	B4GALNT2 (ENSPCIG00000003606) #17	GNGT2 (ENSPCIG00000013109)	ABI3 (ENSPCIG00000013108) #18	PHOSPHO1 (ENSPCIG00000013107) #19	ENSPCIG00000013106	ZNF652 (ENSPCIG00000013105) #20	PHB1 (ENSPCIG00000013104) #21	NGFR (ENSPCIG00000014398) #22	NXPH3 (ENSPCIG00000013103) #23	ENSPCIG00000013102	SPOP (ENSPCIG00000013101) #24	SLC35B1 (ENSPCIG00000013098) #25	FAM117A (ENSPCIG00000013096) #26	KAT7 (ENSPCIG00000013089) #27	DLX4 (ENSPCIG00000029167) #29	DLX3 (ENSPCIG00000029166) #30	ITGA3 (ENSPCIG00000029165) #31	PDK2 (ENSPCIG00000029164) #32	SAMD14 (ENSPCIG00000029163) #33	PPP1R9B (ENSPCIG00000029162) #34	SGCA (ENSPCIG00000029161) #35	COL1A1 (ENSPCIG00000029160) #37	ENSPCIG00000020256
Common wonbat	MODERN SPECIES	1037	HOXB6 (ENSVURG00010007602)	HOXB7 (ENSVURG00010007606)	HOXB8 (ENSVURG00010007609)	HOXB9 (ENSVURG00010007619) #7	HOXB13 (ENSVURG00010007629) #9	CALCOCO2 (ENSVURG00010007642) #11	ENSVURG00010007663 #13	SNF8 (ENSVURG00010007691) #14	IGF2BP1 (ENSVURG00010007702) #16	B4GALNT2 (ENSVURG00010007761) #17	GNGT2 (ENSVURG00010007781)	ABI3 (ENSVURG00010007788) #18	PHOSPHO1 (ENSVURG00010007795) #19	ZNF652 (ENSVURG00010007816) #20	PHB1 (ENSVURG00010007822) #21	NGFR (ENSVURG00010007851) #22	NXPH3 (ENSVURG00010007859) #23	SPOP (ENSVURG00010007867) #24	SLC35B1 (ENSVURG00010007896) #25	FAM117A (ENSVURG00010007908) #26	KAT7 (ENSVURG00010007939) #27	ENSVURG00010007979	DLX4 (ENSVURG00010008009) #29	DLX3 (ENSVURG00010008014) #30	ITGA3 (ENSVURG00010008033) #31	PDK2 (ENSVURG00010008089) #32	SAMD14 (ENSVURG00010008102) #33	PPP1R9B (ENSVURG00010008112) #34	SGCA (ENSVURG00010008123) #35	COL1A1 (ENSVURG00010008141) #37	MPP2 (ENSVURG00010008156)
Wallaby	MODERN SPECIES	6091																ENSMEUG00000000859 #22
Tasmanian devil	MODERN SPECIES	3	HOXB8 (ENSSHAG00000023021)	HOXB9 (ENSSHAG00000012684) #7	HOXB13 (ENSSHAG00000013189) #9	TTLL6 (ENSSHAG00000013396) #10	CALCOCO2 (ENSSHAG00000022264) #11	ATP5MC1 (ENSSHAG00000013859) #12	UBE2Z (ENSSHAG00000020994) #13	SNF8 (ENSSHAG00000013985) #14	ENSSHAG00000014119 #15	IGF2BP1 (ENSSHAG00000014259) #16	ENSSHAG00000014639 #17	ENSSHAG00000014937 #17	ABI3 (ENSSHAG00000023845) #18	PHOSPHO1 (ENSSHAG00000020969) #19	PHB1 (ENSSHAG00000025219) #21	NGFR (ENSSHAG00000006168) #22	NXPH3 (ENSSHAG00000007677) #23	SPOP (ENSSHAG00000021587) #24	SLC35B1 (ENSSHAG00000028015) #25	FAM117A (ENSSHAG00000009386) #26	KAT7 (ENSSHAG00000010137) #27	DLX4 (ENSSHAG00000011988) #29	DLX3 (ENSSHAG00000012177) #30	ITGA3 (ENSSHAG00000012691) #31	PDK2 (ENSSHAG00000012889) #32	PPP1R9B (ENSSHAG00000029473) #34	SAMD14 (ENSSHAG00000021640) #33	ENSSHAG00000026226 #36	SGCA (ENSSHAG00000013308) #35	COL1A1 (ENSSHAG00000013444) #37	ENSSHAG00000014013
Opossum	MODERN SPECIES	1	ENSMODG00000025670 #10	ENSMODG00000012306 #11	ENSMODG00000029509 #11	ENSMODG00000012296	UBE2Z (ENSMODG00000046619) #13	SNF8 (ENSMODG00000012276) #14	ENSMODG00000028269 #15	IGF2BP1 (ENSMODG00000012268) #16	ENSMODG00000047325	B4GALNT2 (ENSMODG00000012242) #17	GNGT2 (ENSMODG00000048984)	ABI3 (ENSMODG00000012233) #18	PHOSPHO1 (ENSMODG00000012217) #19	ZNF652 (ENSMODG00000012215) #20	PHB1 (ENSMODG00000012210) #21	NGFR (ENSMODG00000012200) #22	NXPH3 (ENSMODG00000037958) #23	SPOP (ENSMODG00000046008) #24	SLC35B1 (ENSMODG00000012166) #26	KAT7 (ENSMODG00000012142) #27	ENSMODG00000013640	DLX4 (ENSMODG00000012104) #29	DLX3 (ENSMODG00000012098) #30	ITGA3 (ENSMODG00000012090) #31	PDK2 (ENSMODG00000012026) #32	SAMD14 (ENSMODG00000024070) #33	PPP1R9B (ENSMODG00000012010) #34	ENSMODG00000037352	SGCA (ENSMODG00000011969) #35	ENSMODG00000043992 #36	COL1A1 (ENSMODG00000011945) #37