Pecora	ANCESTRAL SPECIES	6	ENSGT00940000156573	ENSGT00390000016607.a	ENSGT00940000160579	ENSGT00940000157602 #7	ENSGT00940000160582 #9	ENSGT00940000158898 #10	ENSGT00950000183065.D #11	ENSGT00950000183065.A #12	ENSGT00940000154489.A #13	ENSGT00940000155047 #15	ENSGT00940000158889 #16	ENSGT00730000111210 #17	ENSGT00390000018333 #19	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00760000120436 #29	ENSGT00940000156218 #30	ENSGT00950000183105.B.b #31	ENSGT00940000155174 #35	ENSGT00940000160298 #36	ENSGT00950000183103.c #37	ENSGT00940000157573	ENSGT00940000154555.a.b.b.b	ENSGT00940000155347.a.b	ENSGT00940000157971
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000156573	ENSGT00390000016607.a	ENSGT00940000160579	ENSGT00940000157602 #7	ENSGT00940000160582 #9	ENSGT00940000158898 #10	ENSGT00950000183065.D #11	ENSGT00950000183065.A #12	ENSGT00940000154489.A #13	ENSGT00940000155047 #15	ENSGT00940000158889 #16	ENSGT00730000111210 #17	ENSGT00390000018333 #19	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00760000120436 #29	ENSGT00940000156218 #30	ENSGT00950000183105.B.b #31	ENSGT00940000155174 #35	ENSGT00940000160298 #36	ENSGT00950000183103.c #37	ENSGT00940000157573	ENSGT00940000154555.a.b.b.b	ENSGT00940000155347.a.b	ENSGT00940000157971
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000156573	ENSGT00390000016607.a	ENSGT00940000160579	ENSGT00940000157602 #7	ENSGT00940000160582 #9	ENSGT00940000158898 #10	ENSGT00950000183065.D #11	ENSGT00950000183065.A #12	ENSGT00940000154489.A #13	ENSGT00940000155047 #15	ENSGT00940000158889 #16	ENSGT00730000111210 #17	ENSGT00390000018333 #19	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00760000120436 #29	ENSGT00940000156218 #30	ENSGT00950000183105.B.b #31	ENSGT00940000155174 #35	ENSGT00940000160298 #36	ENSGT00950000183103.c #37	ENSGT00940000157573	ENSGT00940000154555.a.b.b.b	ENSGT00940000155347.a.b	ENSGT00940000157971
Caprinae	ANCESTRAL SPECIES	11	ENSGT00940000156573	ENSGT00390000016607.a	ENSGT00940000160579	ENSGT00940000157602 #7	ENSGT00940000160582 #9	ENSGT00940000158898 #10	ENSGT00950000183065.D #11	ENSGT00950000183065.A #12	ENSGT00940000154489.A #13	ENSGT00940000155047 #15	ENSGT00940000158889 #16	ENSGT00730000111210 #17	ENSGT00390000018333 #19	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00760000120436 #29	ENSGT00940000156218 #30	ENSGT00950000183105.B.b #31	ENSGT00940000155174 #35	ENSGT00940000160298 #36	ENSGT00950000183103.c #37	ENSGT00940000157573	ENSGT00940000154555.a.b.b.b	ENSGT00940000155347.a.b	ENSGT00940000157971
Rambouillet Sheep	MODERN SPECIES	23	LIPC (ENSOARG00020021564) #7	ENSOARG00020021759 #8	AQP9 (ENSOARG00020021823) #9	ALDH1A2 (ENSOARG00020021892) #10	POLR2M (ENSOARG00020022191) #11	MYZAP (ENSOARG00020022259) #12	CGNL1 (ENSOARG00020022386) #13	ENSOARG00020022647 #14	TCF12 (ENSOARG00020022679) #15	ZNF280D (ENSOARG00020022968) #16	MNS1 (ENSOARG00020023210) #17	ENSOARG00020023225 #18	TEX9 (ENSOARG00020023244) #19	RFX7 (ENSOARG00020023368) #20	NEDD4 (ENSOARG00020023422) #21	PRTG (ENSOARG00020024103) #22	PYGO1 (ENSOARG00020024222) #23	DNAAF4 (ENSOARG00020024256) #24	ENSOARG00020024348 #25	C15orf65 (ENSOARG00020024376) #26	CCPG1 (ENSOARG00020024398) #27	PIGB (ENSOARG00020024539) #28	PIGBOS1 (ENSOARG00020024563) #29	RAB27A (ENSOARG00020024569) #30	RSL24D1 (ENSOARG00020024588) #31	ENSOARG00020024607 #32	ENSOARG00020024618 #33	ENSOARG00020024632 #34	UNC13C (ENSOARG00020024653) #35	WDR72 (ENSOARG00020024704) #36	ONECUT1 (ENSOARG00020024739) #37
Goat	MODERN SPECIES	1	MINDY2 (ENSCHIG00000008343)	ENSCHIG00000004124	ADAM10 (ENSCHIG00000007232)	LIPC (ENSCHIG00000026829) #7	AQP9 (ENSCHIG00000018286) #9	ALDH1A2 (ENSCHIG00000025960) #10	POLR2M (ENSCHIG00000000701) #11	MYZAP (ENSCHIG00000010101) #12	CGNL1 (ENSCHIG00000012395) #13	TCF12 (ENSCHIG00000008569) #15	ZNF280D (ENSCHIG00000021583) #16	MNS1 (ENSCHIG00000011779) #17	TEX9 (ENSCHIG00000016001) #19	RFX7 (ENSCHIG00000026500) #20	NEDD4 (ENSCHIG00000017824) #21	PRTG (ENSCHIG00000014891) #22	PYGO1 (ENSCHIG00000024969) #23	DNAAF4 (ENSCHIG00000016814) #24	PIERCE2 (ENSCHIG00000019137) #26	CCPG1 (ENSCHIG00000024802) #27	PIGB (ENSCHIG00000018932) #28	RAB27A (ENSCHIG00000007718) #30	RSL24D1 (ENSCHIG00000016405) #31	ENSCHIG00000013181 #35	WDR72 (ENSCHIG00000010513) #36	ONECUT1 (ENSCHIG00000018295) #37	ATOSA (ENSCHIG00000010470)	ENSCHIG00000017275	MYO5A (ENSCHIG00000020656)	MYO5C (ENSCHIG00000019938)	ENSCHIG00000024417
Bovinae	ANCESTRAL SPECIES	11	ENSGT00390000016607.a	ENSGT00390000015813.g.d	ENSGT00940000160579	ENSGT00940000157602 #7	ENSGT00940000160582 #9	ENSGT00940000158898 #10	ENSGT00950000183065.D #11	ENSGT00950000183065.A #12	ENSGT00940000154489.A #13	ENSGT00940000155047 #15	ENSGT00940000158889 #16	ENSGT00730000111210 #17	ENSGT00390000018333 #19	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00760000120436 #29	ENSGT00940000156218.b #30	ENSGT00940000156218.a #30	ENSGT00950000183105.B.b #31	ENSGT00940000155174 #35	ENSGT00940000160298 #36	ENSGT00950000183103.c #37	ENSGT00940000157573	ENSGT00940000154555.a.b.b.b	ENSGT00940000155347.a.b
Bos	ANCESTRAL SPECIES	13	ENSGT00390000016607.a	ENSGT00390000015813.g.d	ENSGT00940000160579	ENSGT00940000157602 #7	ENSGT00940000160582 #9	ENSGT00940000158898 #10	ENSGT00950000183065.D #11	ENSGT00950000183065.A #12	ENSGT00940000154489.A #13	ENSGT00940000155047 #15	ENSGT00940000158889 #16	ENSGT00730000111210 #17	ENSGT00390000018333 #19	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00760000120436 #29	ENSGT00940000156218.b #30	ENSGT00940000156218.a #30	ENSGT00950000183105.B.b #31	ENSGT00940000155174 #35	ENSGT00940000160298 #36	ENSGT00950000183103.c #37	ENSGT00940000157573	ENSGT00940000154555.a.b.b.b	ENSGT00940000155347.a.b
Bos_b	ANCESTRAL SPECIES	11	ENSGT00390000015813.g.d	ENSGT00940000160579	ENSGT00940000157602 #7	ENSGT00940000160582 #9	ENSGT00940000158898 #10	ENSGT00950000183065.D #11	ENSGT00950000183065.A #12	ENSGT00940000154489.A #13	ENSGT00940000155047 #15	ENSGT00940000158889 #16	ENSGT00730000111210 #17	ENSGT00390000018333 #19	ENSGT01050000244970.b #20	ENSGT01090000260003.a.b.b.a.a.a.b.b.p	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00940000156218.a #30	ENSGT00950000183105.B.b #31	ENSGT00940000155174 #35	ENSGT00940000160298 #36	ENSGT00950000183103.c #37	ENSGT00940000157573	ENSGT00940000154555.a.b.b.b	ENSGT00940000155347.a.b	ENSGT00940000157971.m.a	ENSGT01000000214413.a
Hybrid Bos Indicus	MODERN SPECIES	1	AQP9 (ENSBIXG00005019291) #9	ALDH1A2 (ENSBIXG00005019214) #10	POLR2M (ENSBIXG00005019093) #11	MYZAP (ENSBIXG00005019030) #12	CGNL1 (ENSBIXG00005018869) #13	TCF12 (ENSBIXG00005018770) #15	ZNF280D (ENSBIXG00005018538) #16	ENSBIXG00005018423	MNS1 (ENSBIXG00005018404) #17	TEX9 (ENSBIXG00005018366) #19	ENSBIXG00005018317	ENSBIXG00005002965	RFX7 (ENSBIXG00005002962) #20	NEDD4 (ENSBIXG00005018225) #21	ENSBIXG00005017728	PRTG (ENSBIXG00005017699) #22	ENSBIXG00005017681	DNAAF4 (ENSBIXG00005017633) #24	PIERCE2 (ENSBIXG00005017539) #26	CCPG1 (ENSBIXG00005017475) #27	PIGB (ENSBIXG00005006358) #28	PIGBOS1 (ENSBIXG00005017348) #29	RSL24D1 (ENSBIXG00005017326) ##31	UNC13C (ENSBIXG00005017235) #35	WDR72 (ENSBIXG00005017181) #36	ONECUT1 (ENSBIXG00005002781) #37	ATOSA (ENSBIXG00005017066)	ENSBIXG00005016958	MYO5A (ENSBIXG00005016849)	MYO5C (ENSBIXG00005016698)	GNB5 (ENSBIXG00005002690)
Cow	MODERN SPECIES	1	LIPC (ENSBTAG00000005479) #7	ENSBTAG00000049039	AQP9 (ENSBTAG00000013452) #9	ALDH1A2 (ENSBTAG00000010119) #10	POLR2M (ENSBTAG00000040384) #11	MYZAP (ENSBTAG00000002194) #12	CGNL1 (ENSBTAG00000008575) #13	TCF12 (ENSBTAG00000002586) #15	ENSBTAG00000053119 #15	ENSBTAG00000052391 #16	MNS1 (ENSBTAG00000000271) #17	TEX9 (ENSBTAG00000031433) #19	RFX7 (ENSBTAG00000000565) #20	NEDD4 (ENSBTAG00000013793) #21	ENSBTAG00000031396	PRTG (ENSBTAG00000005848) #22	PYGO1 (ENSBTAG00000009151) #23	DNAAF4 (ENSBTAG00000031388) #24	PIERCE2 (ENSBTAG00000051675) #26	CCPG1 (ENSBTAG00000012741) #27	PIGB (ENSBTAG00000012740) #28	RAB27A (ENSBTAG00000012408) #30	RSL24D1 (ENSBTAG00000001342) #31	UNC13C (ENSBTAG00000025522) #35	WDR72 (ENSBTAG00000021876) #36	ONECUT1 (ENSBTAG00000046470) #37	ATOSA (ENSBTAG00000024958)	ARPP19 (ENSBTAG00000011022)	MYO5A (ENSBTAG00000006489)	MYO5C (ENSBTAG00000003763)	GNB5 (ENSBTAG00000003762)
Bos_a	ANCESTRAL SPECIES	53	ENSGT00390000016607.a	ENSGT00390000015813.g.d	ENSGT00940000160579	ENSGT00940000157602 #7	ENSGT00940000160582 #9	ENSGT00940000158898 #10	ENSGT00950000183065.D #11	ENSGT00950000183065.A #12	ENSGT00940000154489.A #13	ENSGT00940000155047 #15	ENSGT00940000158889 #16	ENSGT00730000111210 #17	ENSGT00390000018333 #19	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00760000120436 #29
Wild yak	MODERN SPECIES	1802							POLR2M (ENSBMUG00000008259) #11	MYZAP (ENSBMUG00000008320) #12	CGNL1 (ENSBMUG00000008354) #13	TCF12 (ENSBMUG00000008445) #15	ZNF280D (ENSBMUG00000008538) #16	MNS1 (ENSBMUG00000008552) #17	TEX9 (ENSBMUG00000008599) #19	RFX7 (ENSBMUG00000008646) #20	NEDD4 (ENSBMUG00000008777) #21	PRTG (ENSBMUG00000008833) #22	PYGO1 (ENSBMUG00000008849) #23	DNAAF4 (ENSBMUG00000008868) #24	PIERCE2 (ENSBMUG00000008876) #26	CCPG1 (ENSBMUG00000008930) #27	PIGB (ENSBMUG00000008959) #28	PIGBOS1 (ENSBMUG00000008967) #29	ENSBMUG00000008998 #30	RSL24D1 (ENSBMUG00000009011) #31
Domestic yak	MODERN SPECIES	2	ADAM10 (ENSBGRG00000010308)	LIPC (ENSBGRG00000010472) #7	AQP9 (ENSBGRG00000011032) #9	ALDH1A2 (ENSBGRG00000011324) #10	POLR2M (ENSBGRG00000011811) #11	MYZAP (ENSBGRG00000011974) #12	CGNL1 (ENSBGRG00000012540) #13	TCF12 (ENSBGRG00000012739) #15	ZNF280D (ENSBGRG00000013385) #16	ENSBGRG00000013754	MNS1 (ENSBGRG00000013787) #17	TEX9 (ENSBGRG00000013941) #19	ENSBGRG00000014232	RFX7 (ENSBGRG00000014266) #20	NEDD4 (ENSBGRG00000014374) #21	PRTG (ENSBGRG00000015376) #22	PYGO1 (ENSBGRG00000015626) #23	DNAAF4 (ENSBGRG00000015774) #24	PIERCE2 (ENSBGRG00000016198) #26	CCPG1 (ENSBGRG00000016245) #27	PIGB (ENSBGRG00000016535) #28	PIGBOS1 (ENSBGRG00000016687) #29	ENSBGRG00000016711 #30	RSL24D1 (ENSBGRG00000016747) #31	ENSBGRG00000016834	UNC13C (ENSBGRG00000016886) #35	WDR72 (ENSBGRG00000017213) #36	ONECUT1 (ENSBGRG00000017359) #37	ATOSA (ENSBGRG00000017394)	ENSBGRG00000017680	MYO5A (ENSBGRG00000017940)
American bison	MODERN SPECIES	3000	ENSBBBG00000014172	ADAM10 (ENSBBBG00000014183)	LIPC (ENSBBBG00000002888) #7	AQP9 (ENSBBBG00000014231) #9	ALDH1A2 (ENSBBBG00000014299) #10	POLR2M (ENSBBBG00000014311) #11	MYZAP (ENSBBBG00000014366) #12	CGNL1 (ENSBBBG00000014380) #13	TCF12 (ENSBBBG00000009128) #15	ZNF280D (ENSBBBG00000014586) #16	MNS1 (ENSBBBG00000014599) #17	ENSBBBG00000014604	TEX9 (ENSBBBG00000014685) #19	RFX7 (ENSBBBG00000014720) #20	NEDD4 (ENSBBBG00000014895) #21	PRTG (ENSBBBG00000001204) #22	PYGO1 (ENSBBBG00000001176) #23	DNAAF4 (ENSBBBG00000001110) #24	PIERCE2 (ENSBBBG00000001102) #26	CCPG1 (ENSBBBG00000001012) #27	PIGB (ENSBBBG00000000978) #28	PIGBOS1 (ENSBBBG00000000972) #29	ENSBBBG00000000933 #30	RSL24D1 (ENSBBBG00000000926) #31	UNC13C (ENSBBBG00000003687) #35	WDR72 (ENSBBBG00000007362) #36	ENSBBBG00000014976	ATOSA (ENSBBBG00000015015)	ENSBBBG00000015027	MYO5A (ENSBBBG00000015441)	MYO5C (ENSBBBG00000003864)
Siberian musk deer	MODERN SPECIES	257	ENSMMSG00000019695	ADAM10 (ENSMMSG00000019713)	LIPC (ENSMMSG00000019830) #7	AQP9 (ENSMMSG00000019948) #9	ALDH1A2 (ENSMMSG00000019982) #10	POLR2M (ENSMMSG00000020150) #11	MYZAP (ENSMMSG00000020205) #12	CGNL1 (ENSMMSG00000020305) #13	TCF12 (ENSMMSG00000020389) #15	ZNF280D (ENSMMSG00000020750) #16	MNS1 (ENSMMSG00000020858) #17	TEX9 (ENSMMSG00000005857) #19	ENSMMSG00000006005	RFX7 (ENSMMSG00000006029) #20	NEDD4 (ENSMMSG00000006090) #21	PRTG (ENSMMSG00000006260) #22	PYGO1 (ENSMMSG00000006373) #23	DNAAF4 (ENSMMSG00000006406) #24	PIERCE2 (ENSMMSG00000006447) #26	CCPG1 (ENSMMSG00000006480) #27	PIGB (ENSMMSG00000006576) #28	PIGBOS1 (ENSMMSG00000006610) #29	RAB27A (ENSMMSG00000006628) #30	RSL24D1 (ENSMMSG00000006658) #31	ENSMMSG00000006679	UNC13C (ENSMMSG00000006740) #35	WDR72 (ENSMMSG00000007136) #36	ONECUT1 (ENSMMSG00000007176) #37	ATOSA (ENSMMSG00000007199)	ENSMMSG00000007301	MYO5A (ENSMMSG00000007391)
Yarkand deer	MODERN SPECIES	3	ENSCHYG00000014708	ALDH1A2 (ENSCHYG00000014768) #10	MYZAP (ENSCHYG00000015583) #12	CGNL1 (ENSCHYG00000016114) #13	ENSCHYG00000016531	ENSCHYG00000016552	TCF12 (ENSCHYG00000016611) #15	ENSCHYG00000017295	ZNF280D (ENSCHYG00000017379) #16	MNS1 (ENSCHYG00000018147) #17	TEX9 (ENSCHYG00000018258) #19	RFX7 (ENSCHYG00000018617) #20	ENSCHYG00000018700	NEDD4 (ENSCHYG00000018840) #21	ENSCHYG00000021021	PRTG (ENSCHYG00000021091) #22	PYGO1 (ENSCHYG00000021276) #23	DNAAF4 (ENSCHYG00000021358) #24	PIERCE2 (ENSCHYG00000021599) #26	CCPG1 (ENSCHYG00000021635) #27	PIGB (ENSCHYG00000021828) #28	RAB27A (ENSCHYG00000021962) #30	RSL24D1 (ENSCHYG00000021995) #31	ENSCHYG00000022045	UNC13C (ENSCHYG00000022103) #35	WDR72 (ENSCHYG00000022789) #36	ONECUT1 (ENSCHYG00000022899) #37	ATOSA (ENSCHYG00000004775)	ENSCHYG00000004818	MYO5A (ENSCHYG00000004853)	MYO5C (ENSCHYG00000004954)