Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00390000016607.a	ENSGT00940000160579	ENSGT00940000157602 #7	ENSGT00940000160582 #8	ENSGT00940000158898 #9	ENSGT00950000183065.D #10	ENSGT00950000183065.A #11	ENSGT00940000154489.A #12	ENSGT00940000155047 #13	ENSGT00940000158889 #15	ENSGT00730000111210 #16	ENSGT00390000018333 #17	ENSGT00910000148328	ENSGT01050000244970.b #19	ENSGT00940000158905 #20	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #25	ENSGT00940000160497 #26	ENSGT00950000183090.A	ENSGT00760000120436	ENSGT00940000156218 #27	ENSGT00950000183105.B.b #28	ENSGT00940000155174 #29	ENSGT00940000160298 #30	ENSGT00950000183103.c #31	ENSGT00940000157573 #32	ENSGT00940000154555.b.cb	ENSGT00940000155347.a.b #34	ENSGT00940000157971 #35
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00390000016607.a	ENSGT00940000160579	ENSGT00940000157602 #7	ENSGT00940000160582 #8	ENSGT00940000158898 #9	ENSGT00950000183065.D #10	ENSGT00950000183065.A #11	ENSGT00940000154489.A #12	ENSGT00940000155047 #13	ENSGT00940000158889 #15	ENSGT00730000111210 #16	ENSGT00390000018333 #17	ENSGT00910000148328	ENSGT01050000244970.b #19	ENSGT00940000158905 #20	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #25	ENSGT00940000160497 #26	ENSGT00950000183090.A	ENSGT00760000120436	ENSGT00940000156218 #27	ENSGT00950000183105.B.b.bb #28	ENSGT00940000155174 #29	ENSGT00940000160298 #30	ENSGT00950000183103.c #31	ENSGT00940000157573 #32	ENSGT00940000154555.b.cb	ENSGT00940000155347.a.b #34	ENSGT00940000157971 #35
Marmotini	ANCESTRAL SPECIES	9	ENSGT00960000192699	ENSGT00390000016607.a	ENSGT00940000160579	ENSGT00940000157602 #7	ENSGT00940000160582 #8	ENSGT00940000158898 #9	ENSGT00950000183065.D #10	ENSGT00950000183065.A #11	ENSGT00940000154489.A #12	ENSGT00940000155047 #13	ENSGT00940000158889 #15	ENSGT00730000111210 #16	ENSGT00390000018333 #17	ENSGT01050000244970.b #19	ENSGT00940000158905 #20	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #25	ENSGT00940000160497 #26	ENSGT00950000183090.A	ENSGT00940000156218 #27	ENSGT00950000183105.B.b.bb #28	ENSGT00940000155174 #29	ENSGT00940000160298 #30	ENSGT00950000183103.c #31	ENSGT00940000157573 #32	ENSGT00940000154555.b.cb	ENSGT00940000155347.a.b #34	ENSGT00940000157971 #35	ENSGT01000000214413.a #36
Alpin marmot	MODERN SPECIES	7	LIPC (ENSMMMG00000014432) #7	AQP9 (ENSMMMG00000014447) #8	ALDH1A2 (ENSMMMG00000014471) #9	POLR2M (ENSMMMG00000014496) #10	MYZAP (ENSMMMG00000014508) #11	CGNL1 (ENSMMMG00000014543) #12	TCF12 (ENSMMMG00000014657) #13	ENSMMMG00000014979 #14	ZNF280D (ENSMMMG00000014982) #15	MNS1 (ENSMMMG00000015043) #16	TEX9 (ENSMMMG00000015071) #17	ENSMMMG00000015145 #18	RFX7 (ENSMMMG00000015149) #19	NEDD4 (ENSMMMG00000015178) #20	ENSMMMG00000015209 #21	PRTG (ENSMMMG00000015217) #22	PYGO1 (ENSMMMG00000015245) #23	DNAAF4 (ENSMMMG00000015251) #24	PIERCE2 (ENSMMMG00000015276) #25	CCPG1 (ENSMMMG00000015280) #26	RAB27A (ENSMMMG00000015328) #27	ENSMMMG00000015334 #28	UNC13C (ENSMMMG00000015358) #29	ENSMMMG00000015421 #30	ONECUT1 (ENSMMMG00000015445) #31	ATOSA (ENSMMMG00000015461) #32	ENSMMMG00000015496 #33	MYO5A (ENSMMMG00000015509) #34	MYO5C (ENSMMMG00000015665) #35	GNB5 (ENSMMMG00000015706) #36	ENSMMMG00000015752 #37
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00390000016607.a	ENSGT00940000160579	ENSGT00940000157602 #7	ENSGT00940000160582 #8	ENSGT00940000158898 #9	ENSGT00950000183065.D #10	ENSGT00950000183065.A #11	ENSGT00940000154489.A #12	ENSGT00940000155047 #13	ENSGT00940000158889 #15	ENSGT00730000111210 #16	ENSGT00390000018333 #17	ENSGT00390000006192.u	ENSGT01050000244970.b #19	ENSGT00940000158905 #20	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #25	ENSGT00940000160497 #26	ENSGT00950000183090.A	ENSGT00940000156218 #27	ENSGT00950000183105.B.b.bb #28	ENSGT00940000155174 #29	ENSGT00940000160298 #30	ENSGT00950000183103.c #31	ENSGT00940000157573 #32	ENSGT00940000154555.b.cb	ENSGT00940000155347.a.b #34	ENSGT00940000157971 #35	ENSGT01000000214413.a #36
Arctic ground squirrel	MODERN SPECIES	578														RFX7 (ENSUPAG00010002994) #19	NEDD4 (ENSUPAG00010003034) #20	PRTG (ENSUPAG00010003066) #22	PYGO1 (ENSUPAG00010003094) #23	ENSUPAG00010003116	ENSUPAG00010003118	ENSUPAG00010003122	PIERCE2 (ENSUPAG00010003142) #25	CCPG1 (ENSUPAG00010003151) #26	PIGB (ENSUPAG00010003199)	RAB27A (ENSUPAG00010003207) #27
Squirrel	MODERN SPECIES	71	MINDY2 (ENSSTOG00000000569)	ADAM10 (ENSSTOG00000000561)	LIPC (ENSSTOG00000000547) #7	AQP9 (ENSSTOG00000014131) #8	ALDH1A2 (ENSSTOG00000000292) #9	POLR2M (ENSSTOG00000026874) #10	MYZAP (ENSSTOG00000027285) #11	CGNL1 (ENSSTOG00000015855) #12	ENSSTOG00000001523 #13	ZNF280D (ENSSTOG00000003775) #15	MNS1 (ENSSTOG00000006850) #16	TEX9 (ENSSTOG00000003051) #17	ENSSTOG00000029745	RFX7 (ENSSTOG00000027249) #19	NEDD4 (ENSSTOG00000005877) #20	PRTG (ENSSTOG00000009243) #22	PYGO1 (ENSSTOG00000009236) #23	ENSSTOG00000028579	DNAAF4 (ENSSTOG00000021598) #24	PIERCE2 (ENSSTOG00000003853) #25	CCPG1 (ENSSTOG00000008480) #26	PIGB (ENSSTOG00000008450)	RAB27A (ENSSTOG00000025489) #27	RSL24D1 (ENSSTOG00000009408) #28	UNC13C (ENSSTOG00000026192) #29	WDR72 (ENSSTOG00000015381) #30	ONECUT1 (ENSSTOG00000028083) #31	ATOSA (ENSSTOG00000024505) #32	ENSSTOG00000003677	MYO5A (ENSSTOG00000007106) #34	MYO5C (ENSSTOG00000014041) #35
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005011609	LIPC (ENSSVLG00005011202) #7	AQP9 (ENSSVLG00005011049) #8	ALDH1A2 (ENSSVLG00005010692) #9	ENSSVLG00005010581 #10	MYZAP (ENSSVLG00005010520) #11	CGNL1 (ENSSVLG00005010468) #12	TCF12 (ENSSVLG00005010240) #13	ZNF280D (ENSSVLG00005010148) #15	MNS1 (ENSSVLG00005010076) #16	TEX9 (ENSSVLG00005009884) #17	ENSSVLG00005009847	ENSSVLG00005009806	RFX7 (ENSSVLG00005009779) #19	NEDD4 (ENSSVLG00005009303) #20	PRTG (ENSSVLG00005009076) #22	PYGO1 (ENSSVLG00005009006) #23	DNAAF4 (ENSSVLG00005008874) #24	PIERCE2 (ENSSVLG00005008825) #25	ENSSVLG00005008737 #26	PIGB (ENSSVLG00005008710)	PIGBOS1 (ENSSVLG00005008699)	RAB27A (ENSSVLG00005008649) #27	ENSSVLG00005008601 #28	UNC13C (ENSSVLG00005008250) #29	ENSSVLG00005008170	WDR72 (ENSSVLG00005007884) #30	ONECUT1 (ENSSVLG00005007833) #31	ATOSA (ENSSVLG00005007704) #32	ENSSVLG00005007651	ARPP19 (ENSSVLG00005007620)
Hystricomorpha	ANCESTRAL SPECIES	15														ENSGT01050000244970.b #19	ENSGT00940000158905 #20	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #25	ENSGT00940000160497 #26	ENSGT00950000183090.A	ENSGT00760000120436	ENSGT00940000156218 #27	ENSGT00950000183105.B.a.a.s ##28	ENSGT00940000155174 #29	ENSGT00940000160298 #30	ENSGT00950000183103.c #31	ENSGT00940000157573 #32	ENSGT00940000154555.b.cb	ENSGT00940000155347.a.b #34	ENSGT00940000157971 #35
Hystricomorpha_a	ANCESTRAL SPECIES	18														ENSGT01050000244970.b #19	ENSGT00940000158905 #20	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #25	ENSGT00940000160497 #26	ENSGT00950000183090.A	ENSGT00940000156218 #27	ENSGT00950000183105.B.a.a.s ##28	ENSGT00940000155174 #29	ENSGT00940000160298 #30	ENSGT00950000183103.c #31	ENSGT00940000157573 #32	ENSGT00940000154555.b.cb	ENSGT00940000155347.a.b #34	ENSGT00940000157971 #35	ENSGT01000000214413.a #36
Hystricomorpha_b	ANCESTRAL SPECIES	18														ENSGT01050000244970.b #19	ENSGT00940000158905 #20	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #24	ENSGT00940000154745.b #25	ENSGT00940000160497 #26	ENSGT00950000183090.A	ENSGT00940000156218 #27	ENSGT00950000183105.B.a.a.s ##28	ENSGT00940000155174 #29	ENSGT00940000160298 #30	ENSGT00950000183103.c #31	ENSGT00940000157573 #32	ENSGT00940000154555.b.cb	ENSGT00940000155347.a.b #34	ENSGT00940000157971 #35	ENSGT01000000214413.a #36
Long-tailed chinchilla	MODERN SPECIES	116														RFX7 (ENSCLAG00000007236) #19	NEDD4 (ENSCLAG00000014035) #20	PRTG (ENSCLAG00000009566) #22	PYGO1 (ENSCLAG00000010540) #23	ENSCLAG00000006970	ENSCLAG00000007327 #24	PIERCE2 (ENSCLAG00000007999) #25	CCPG1 (ENSCLAG00000008443) #26	PIGB (ENSCLAG00000009183)	RAB27A (ENSCLAG00000006846) #27	RSL24D1 (ENSCLAG00000008785) ##28	UNC13C (ENSCLAG00000013173) #29	WDR72 (ENSCLAG00000007300) #30	ONECUT1 (ENSCLAG00000009766) #31	ATOSA (ENSCLAG00000007724) #32	ARPP19 (ENSCLAG00000007027)	MYO5A (ENSCLAG00000008057) #34	MYO5C (ENSCLAG00000007222) #35
Degu	MODERN SPECIES	146												RFX7 (ENSODEG00000005527) #19	ENSODEG00000006440	NEDD4 (ENSODEG00000006803) #20	ENSODEG00000006547	PRTG (ENSODEG00000006148) #22	ENSODEG00000007713	PYGO1 (ENSODEG00000005615) #23	DNAAF4 (ENSODEG00000007101) #24	PIERCE2 (ENSODEG00000007192) #25	CCPG1 (ENSODEG00000007737) #26	PIGB (ENSODEG00000006748)	RAB27A (ENSODEG00000006284) #27	RSL24D1 (ENSODEG00000005430) ##28	ENSODEG00000006126	ENSODEG00000019275	ENSODEG00000006149 #30	ONECUT1 (ENSODEG00000007415) #31	ATOSA (ENSODEG00000007975) #32	ENSODEG00000005366	ENSODEG00000019439
Guinea pig	MODERN SPECIES	23														RFX7 (ENSCPOG00000034038) #19	NEDD4 (ENSCPOG00000000686) #20	PRTG (ENSCPOG00000001715) #22	PYGO1 (ENSCPOG00000031441) #23	DNAAF4 (ENSCPOG00000023129) #24	PIERCE2 (ENSCPOG00000034404) #25	CCPG1 (ENSCPOG00000011667) #26	PIGB (ENSCPOG00000011660)	RAB27A (ENSCPOG00000030394) #27	RSL24D1 (ENSCPOG00000009371) ##28	ENSCPOG00000026063	UNC13C (ENSCPOG00000007805) #29	WDR72 (ENSCPOG00000011137) #30	ONECUT1 (ENSCPOG00000026341) #31	ATOSA (ENSCPOG00000014708) #32	ARPP19 (ENSCPOG00000011228)	MYO5A (ENSCPOG00000007886) #34	MYO5C (ENSCPOG00000007212) #35
Naked mole-rat female	MODERN SPECIES	11	DTWD1 (ENSHGLG00000048935)	ATP8B4 (ENSHGLG00000012603)	SLC27A2 (ENSHGLG00000011641)	HDC (ENSHGLG00000010588)	GABPB1 (ENSHGLG00000014271)	ENSHGLG00000014701	USP8 (ENSHGLG00000012639)	USP50 (ENSHGLG00000043391)	TRPM7 (ENSHGLG00000013915)	SPPL2A (ENSHGLG00000037024)	ENSHGLG00000012462	TNFAIP8L3 (ENSHGLG00000010967)	ENSHGLG00000039885	ENSHGLG00000009904 #19	NEDD4 (ENSHGLG00000013198) #20	PRTG (ENSHGLG00000009677) #22	PYGO1 (ENSHGLG00000034526) #23	DNAAF4 (ENSHGLG00000015787) #24	ENSHGLG00000039905 #25	CCPG1 (ENSHGLG00000012053) #26	PIGB (ENSHGLG00000011247)	ENSHGLG00000044214	RAB27A (ENSHGLG00000013717) #27	RSL24D1 (ENSHGLG00000043923) ##28	ENSHGLG00000039454	UNC13C (ENSHGLG00000006768) #29	WDR72 (ENSHGLG00000010353) #30	ENSHGLG00000001410	ENSHGLG00000015901	ONECUT1 (ENSHGLG00000046426) #31	FAM214A (ENSHGLG00000017408) #32