Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00390000016607.a #7	ENSGT00940000160579 #8	ENSGT00940000157602 #9	ENSGT00940000160582 #10	ENSGT00940000158898 #11	ENSGT00950000183065.D #12	ENSGT00950000183065.A #13	ENSGT00940000154489.A #14	ENSGT00940000155047 #15	ENSGT00940000158889 #16	ENSGT00730000111210 #17	ENSGT00390000018333 #18	ENSGT00910000148328	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #25	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00760000120436	ENSGT00940000156218 #29	ENSGT00950000183105.B.b #30	ENSGT00940000155174 #31	ENSGT00940000160298 #32	ENSGT00950000183103.c #33	ENSGT00940000157573 #34	ENSGT00940000154555.b.cb #35	ENSGT00940000155347.a.b #36	ENSGT00940000157971 #37
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00390000016607.a #7	ENSGT00940000160579 #8	ENSGT00940000157602 #9	ENSGT00940000160582 #10	ENSGT00940000158898 #11	ENSGT00950000183065.D #12	ENSGT00950000183065.A #13	ENSGT00940000154489.A #14	ENSGT00940000155047 #15	ENSGT00940000158889 #16	ENSGT00730000111210 #17	ENSGT00390000018333 #18	ENSGT00910000148328	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #25	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00760000120436	ENSGT00940000156218 #29	ENSGT00950000183105.B.b.bb #30	ENSGT00940000155174 #31	ENSGT00940000160298 #32	ENSGT00950000183103.c #33	ENSGT00940000157573 #34	ENSGT00940000154555.b.cb #35	ENSGT00940000155347.a.b #36	ENSGT00940000157971 #37
Marmotini	ANCESTRAL SPECIES	9	ENSGT00960000192699	ENSGT00390000016607.a #7	ENSGT00940000160579 #8	ENSGT00940000157602 #9	ENSGT00940000160582 #10	ENSGT00940000158898 #11	ENSGT00950000183065.D #12	ENSGT00950000183065.A #13	ENSGT00940000154489.A #14	ENSGT00940000155047 #15	ENSGT00940000158889 #16	ENSGT00730000111210 #17	ENSGT00390000018333 #18	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #25	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00940000156218 #29	ENSGT00950000183105.B.b.bb #30	ENSGT00940000155174 #31	ENSGT00940000160298 #32	ENSGT00950000183103.c #33	ENSGT00940000157573 #34	ENSGT00940000154555.b.cb #35	ENSGT00940000155347.a.b #36	ENSGT00940000157971 #37	ENSGT01000000214413.a
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00390000016607.a #7	ENSGT00940000160579 #8	ENSGT00940000157602 #9	ENSGT00940000160582 #10	ENSGT00940000158898 #11	ENSGT00950000183065.D #12	ENSGT00950000183065.A #13	ENSGT00940000154489.A #14	ENSGT00940000155047 #15	ENSGT00940000158889 #16	ENSGT00730000111210 #17	ENSGT00390000018333 #18	ENSGT00390000006192.u #19	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #25	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00940000156218 #29	ENSGT00950000183105.B.b.bb #30	ENSGT00940000155174 #31	ENSGT00940000160298 #32	ENSGT00950000183103.c #33	ENSGT00940000157573 #34	ENSGT00940000154555.b.cb #35	ENSGT00940000155347.a.b #36	ENSGT00940000157971 #37	ENSGT01000000214413.a
Squirrel	MODERN SPECIES	71	MINDY2 (ENSSTOG00000000569) #7	ADAM10 (ENSSTOG00000000561) #8	LIPC (ENSSTOG00000000547) #9	AQP9 (ENSSTOG00000014131) #10	ALDH1A2 (ENSSTOG00000000292) #11	POLR2M (ENSSTOG00000026874) #12	MYZAP (ENSSTOG00000027285) #13	CGNL1 (ENSSTOG00000015855) #14	ENSSTOG00000001523 #15	ZNF280D (ENSSTOG00000003775) #16	MNS1 (ENSSTOG00000006850) #17	TEX9 (ENSSTOG00000003051) #18	ENSSTOG00000029745 #19	RFX7 (ENSSTOG00000027249) #20	NEDD4 (ENSSTOG00000005877) #21	PRTG (ENSSTOG00000009243) #22	PYGO1 (ENSSTOG00000009236) #23	ENSSTOG00000028579 #24	DNAAF4 (ENSSTOG00000021598) #25	PIERCE2 (ENSSTOG00000003853) #26	CCPG1 (ENSSTOG00000008480) #27	PIGB (ENSSTOG00000008450) #28	RAB27A (ENSSTOG00000025489) #29	RSL24D1 (ENSSTOG00000009408) #30	UNC13C (ENSSTOG00000026192) #31	WDR72 (ENSSTOG00000015381) #32	ONECUT1 (ENSSTOG00000028083) #33	ATOSA (ENSSTOG00000024505) #34	ENSSTOG00000003677 #35	MYO5A (ENSSTOG00000007106) #36	MYO5C (ENSSTOG00000014041) #37
Arctic ground squirrel	MODERN SPECIES	578														RFX7 (ENSUPAG00010002994) #20	NEDD4 (ENSUPAG00010003034) #21	PRTG (ENSUPAG00010003066) #22	PYGO1 (ENSUPAG00010003094) #23	ENSUPAG00010003116	ENSUPAG00010003118	ENSUPAG00010003122 #24	PIERCE2 (ENSUPAG00010003142) #26	CCPG1 (ENSUPAG00010003151) #27	PIGB (ENSUPAG00010003199) #28	RAB27A (ENSUPAG00010003207) #29
Alpin marmot	MODERN SPECIES	7	LIPC (ENSMMMG00000014432) #9	AQP9 (ENSMMMG00000014447) #10	ALDH1A2 (ENSMMMG00000014471) #11	POLR2M (ENSMMMG00000014496) #12	MYZAP (ENSMMMG00000014508) #13	CGNL1 (ENSMMMG00000014543) #14	TCF12 (ENSMMMG00000014657) #15	ENSMMMG00000014979	ZNF280D (ENSMMMG00000014982) #16	MNS1 (ENSMMMG00000015043) #17	TEX9 (ENSMMMG00000015071) #18	ENSMMMG00000015145	RFX7 (ENSMMMG00000015149) #20	NEDD4 (ENSMMMG00000015178) #21	ENSMMMG00000015209	PRTG (ENSMMMG00000015217) #22	PYGO1 (ENSMMMG00000015245) #23	DNAAF4 (ENSMMMG00000015251) #25	PIERCE2 (ENSMMMG00000015276) #26	CCPG1 (ENSMMMG00000015280) #27	RAB27A (ENSMMMG00000015328) #29	ENSMMMG00000015334 #30	UNC13C (ENSMMMG00000015358) #31	ENSMMMG00000015421 #32	ONECUT1 (ENSMMMG00000015445) #33	ATOSA (ENSMMMG00000015461) #34	ENSMMMG00000015496	MYO5A (ENSMMMG00000015509) #36	MYO5C (ENSMMMG00000015665) #37	GNB5 (ENSMMMG00000015706)	ENSMMMG00000015752
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005011609 #8	LIPC (ENSSVLG00005011202) #9	AQP9 (ENSSVLG00005011049) #10	ALDH1A2 (ENSSVLG00005010692) #11	ENSSVLG00005010581 #12	MYZAP (ENSSVLG00005010520) #13	CGNL1 (ENSSVLG00005010468) #14	TCF12 (ENSSVLG00005010240) #15	ZNF280D (ENSSVLG00005010148) #16	MNS1 (ENSSVLG00005010076) #17	TEX9 (ENSSVLG00005009884) #18	ENSSVLG00005009847	ENSSVLG00005009806	RFX7 (ENSSVLG00005009779) #20	NEDD4 (ENSSVLG00005009303) #21	PRTG (ENSSVLG00005009076) #22	PYGO1 (ENSSVLG00005009006) #23	DNAAF4 (ENSSVLG00005008874) #25	PIERCE2 (ENSSVLG00005008825) #26	ENSSVLG00005008737 #27	PIGB (ENSSVLG00005008710) #28	PIGBOS1 (ENSSVLG00005008699)	RAB27A (ENSSVLG00005008649) #29	ENSSVLG00005008601 #30	UNC13C (ENSSVLG00005008250) #31	ENSSVLG00005008170	WDR72 (ENSSVLG00005007884) #32	ONECUT1 (ENSSVLG00005007833) #33	ATOSA (ENSSVLG00005007704) #34	ENSSVLG00005007651	ARPP19 (ENSSVLG00005007620) #35
Hystricomorpha	ANCESTRAL SPECIES	15														ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #25	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00760000120436	ENSGT00940000156218 #29	ENSGT00950000183105.B.a.a.s ##30	ENSGT00940000155174 #31	ENSGT00940000160298 #32	ENSGT00950000183103.c #33	ENSGT00940000157573 #34	ENSGT00940000154555.b.cb #35	ENSGT00940000155347.a.b #36	ENSGT00940000157971 #37
Hystricomorpha_a	ANCESTRAL SPECIES	18														ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #25	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00940000156218 #29	ENSGT00950000183105.B.a.a.s ##30	ENSGT00940000155174 #31	ENSGT00940000160298 #32	ENSGT00950000183103.c #33	ENSGT00940000157573 #34	ENSGT00940000154555.b.cb #35	ENSGT00940000155347.a.b #36	ENSGT00940000157971 #37	ENSGT01000000214413.a
Hystricomorpha_b	ANCESTRAL SPECIES	18														ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #25	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00940000156218 #29	ENSGT00950000183105.B.a.a.s ##30	ENSGT00940000155174 #31	ENSGT00940000160298 #32	ENSGT00950000183103.c #33	ENSGT00940000157573 #34	ENSGT00940000154555.b.cb #35	ENSGT00940000155347.a.b #36	ENSGT00940000157971 #37	ENSGT01000000214413.a
Long-tailed chinchilla	MODERN SPECIES	116														RFX7 (ENSCLAG00000007236) #20	NEDD4 (ENSCLAG00000014035) #21	PRTG (ENSCLAG00000009566) #22	PYGO1 (ENSCLAG00000010540) #23	ENSCLAG00000006970	ENSCLAG00000007327 #25	PIERCE2 (ENSCLAG00000007999) #26	CCPG1 (ENSCLAG00000008443) #27	PIGB (ENSCLAG00000009183) #28	RAB27A (ENSCLAG00000006846) #29	RSL24D1 (ENSCLAG00000008785) ##30	UNC13C (ENSCLAG00000013173) #31	WDR72 (ENSCLAG00000007300) #32	ONECUT1 (ENSCLAG00000009766) #33	ATOSA (ENSCLAG00000007724) #34	ARPP19 (ENSCLAG00000007027) #35	MYO5A (ENSCLAG00000008057) #36	MYO5C (ENSCLAG00000007222) #37
Degu	MODERN SPECIES	146												RFX7 (ENSODEG00000005527) #20	ENSODEG00000006440	NEDD4 (ENSODEG00000006803) #21	ENSODEG00000006547	PRTG (ENSODEG00000006148) #22	ENSODEG00000007713	PYGO1 (ENSODEG00000005615) #23	DNAAF4 (ENSODEG00000007101) #25	PIERCE2 (ENSODEG00000007192) #26	CCPG1 (ENSODEG00000007737) #27	PIGB (ENSODEG00000006748) #28	RAB27A (ENSODEG00000006284) #29	RSL24D1 (ENSODEG00000005430) ##30	ENSODEG00000006126	ENSODEG00000019275	ENSODEG00000006149 #32	ONECUT1 (ENSODEG00000007415) #33	ATOSA (ENSODEG00000007975) #34	ENSODEG00000005366 #35	ENSODEG00000019439
Guinea pig	MODERN SPECIES	23														RFX7 (ENSCPOG00000034038) #20	NEDD4 (ENSCPOG00000000686) #21	PRTG (ENSCPOG00000001715) #22	PYGO1 (ENSCPOG00000031441) #23	DNAAF4 (ENSCPOG00000023129) #25	PIERCE2 (ENSCPOG00000034404) #26	CCPG1 (ENSCPOG00000011667) #27	PIGB (ENSCPOG00000011660) #28	RAB27A (ENSCPOG00000030394) #29	RSL24D1 (ENSCPOG00000009371) ##30	ENSCPOG00000026063	UNC13C (ENSCPOG00000007805) #31	WDR72 (ENSCPOG00000011137) #32	ONECUT1 (ENSCPOG00000026341) #33	ATOSA (ENSCPOG00000014708) #34	ARPP19 (ENSCPOG00000011228) #35	MYO5A (ENSCPOG00000007886) #36	MYO5C (ENSCPOG00000007212) #37
Naked mole-rat female	MODERN SPECIES	11	DTWD1 (ENSHGLG00000048935)	ATP8B4 (ENSHGLG00000012603)	SLC27A2 (ENSHGLG00000011641)	HDC (ENSHGLG00000010588)	GABPB1 (ENSHGLG00000014271)	ENSHGLG00000014701	USP8 (ENSHGLG00000012639)	USP50 (ENSHGLG00000043391)	TRPM7 (ENSHGLG00000013915)	SPPL2A (ENSHGLG00000037024)	ENSHGLG00000012462	TNFAIP8L3 (ENSHGLG00000010967)	ENSHGLG00000039885	ENSHGLG00000009904 #20	NEDD4 (ENSHGLG00000013198) #21	PRTG (ENSHGLG00000009677) #22	PYGO1 (ENSHGLG00000034526) #23	DNAAF4 (ENSHGLG00000015787) #25	ENSHGLG00000039905 #26	CCPG1 (ENSHGLG00000012053) #27	PIGB (ENSHGLG00000011247) #28	ENSHGLG00000044214	RAB27A (ENSHGLG00000013717) #29	RSL24D1 (ENSHGLG00000043923) ##30	ENSHGLG00000039454	UNC13C (ENSHGLG00000006768) #31	WDR72 (ENSHGLG00000010353) #32	ENSHGLG00000001410	ENSHGLG00000015901	ONECUT1 (ENSHGLG00000046426) #33	FAM214A (ENSHGLG00000017408) #34