Mus	ANCESTRAL SPECIES	4	ENSGT00520000062301 #7	ENSGT00940000160579 #8	ENSGT00940000157602 #9	ENSGT00940000160582 #10	ENSGT00940000158898 #11	ENSGT00950000183065.D #12	ENSGT00950000183065.A.d.b #13	ENSGT00950000183065.A.d.a #14	ENSGT00940000154489.A #15	ENSGT00940000155047 #16	ENSGT00940000158889 #17	ENSGT00730000111210 #18	ENSGT00390000018333 #19	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #25	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00760000120436	ENSGT00940000156218 #29	ENSGT00940000162601 #31	ENSGT00950000183105.B.a.a	ENSGT00940000155174 #33	ENSGT00940000160298 #34	ENSGT00950000183103.c #35	ENSGT00940000157573 #36	ENSGT00940000154555.b.bb.b #37	ENSGT00940000155347.a.b
Shrew mouse	MODERN SPECIES	1	MGP_PahariEiJ_G0015270 #7	Adam10 (MGP_PahariEiJ_G0015271) #8	Lipc (MGP_PahariEiJ_G0015272) #9	MGP_PahariEiJ_G0015273 #10	Aldh1a2 (MGP_PahariEiJ_G0015274) #11	Polr2m (MGP_PahariEiJ_G0015275) #12	MGP_PahariEiJ_G0015276 #13	Myzap (MGP_PahariEiJ_G0015277) #14	Cgnl1 (MGP_PahariEiJ_G0015278) #15	Tcf12 (MGP_PahariEiJ_G0015279) #16	Zfp280d (MGP_PahariEiJ_G0015280) #17	Mns1 (MGP_PahariEiJ_G0015281) #18	Tex9 (MGP_PahariEiJ_G0015282) #19	MGP_PahariEiJ_G0015283 #20	MGP_PahariEiJ_G0015284 #21	Prtg (MGP_PahariEiJ_G0015285) #22	Pygo1 (MGP_PahariEiJ_G0015286) #23	MGP_PahariEiJ_G0015287 #24	MGP_PahariEiJ_G0015288 #25	Pierce2 (MGP_PahariEiJ_G0015289) #26	Ccpg1 (MGP_PahariEiJ_G0015290) #27	Pigb (MGP_PahariEiJ_G0015291) #28	Rab27a (MGP_PahariEiJ_G0015292) #29	MGP_PahariEiJ_G0015293 #30	MGP_PahariEiJ_G0015294 #31	MGP_PahariEiJ_G0015295 #32	Unc13c (MGP_PahariEiJ_G0015296) #33	Wdr72 (MGP_PahariEiJ_G0015297) #34	Onecut1 (MGP_PahariEiJ_G0015298) #35	Atosa (MGP_PahariEiJ_G0015299) #36	MGP_PahariEiJ_G0015300 #37
Mus_A	ANCESTRAL SPECIES	4	ENSGT00520000062301 #7	ENSGT00940000160579 #8	ENSGT00940000157602 #9	ENSGT00940000160582 #10	ENSGT00940000158898 #11	ENSGT00950000183065.D #12	ENSGT00950000183065.A.d.b #13	ENSGT00950000183065.A.d.a #14	ENSGT00940000154489.A #15	ENSGT00940000155047 #16	ENSGT00940000158889 #17	ENSGT00730000111210 #18	ENSGT00390000018333 #19	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #25	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00760000120436	ENSGT00940000156218 #29	ENSGT00940000162601.c #31	ENSGT00950000183105.B.a.a	ENSGT00940000155174 #33	ENSGT00940000160298 #34	ENSGT00950000183103.c #35	ENSGT00940000157573 #36	ENSGT00940000154555.b.bb.b #37	ENSGT00940000155347.a.b
Mus_B	ANCESTRAL SPECIES	3	ENSGT00520000062301 #7	ENSGT00940000160579 #8	ENSGT00940000157602 #9	ENSGT00940000160582 #10	ENSGT00940000158898 #11	ENSGT00950000183065.D #12	ENSGT00950000183065.A.d.b #13	ENSGT00950000183065.A.d.a #14	ENSGT00940000154489.A #15	ENSGT00940000155047 #16	ENSGT00940000158889 #17	ENSGT00730000111210 #18	ENSGT00390000018333 #19	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #25	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00760000120436	ENSGT00940000156218 #29	ENSGT00940000162601.c #31	ENSGT00950000183105.B.a.a	ENSGT00940000155174 #33	ENSGT00940000160298 #34	ENSGT00950000183103.c #35	ENSGT00940000157573 #36	ENSGT00940000154555.b.bb.b #37	ENSGT00940000155347.a.b
Mouse	MODERN SPECIES	18	Sltm (ENSMUSG00000032212)	Mindy2 (ENSMUSG00000042444)	Adam10 (ENSMUSG00000054693) #8	Lipc (ENSMUSG00000032207) #9	Aqp9 (ENSMUSG00000032204) #10	Aldh1a2 (ENSMUSG00000013584) #11	Polr2m (ENSMUSG00000032199) #12	Myzap (ENSMUSG00000041361) #14	Cgnl1 (ENSMUSG00000032232) #15	Tcf12 (ENSMUSG00000032228) #16	Zfp280d (ENSMUSG00000038535) #17	Mns1 (ENSMUSG00000032221) #18	Tex9 (ENSMUSG00000090626) #19	Rfx7 (ENSMUSG00000037674) #20	Nedd4 (ENSMUSG00000032216) #21	Prtg (ENSMUSG00000036030) #22	Pygo1 (ENSMUSG00000034910) #23	Dnaaf4 (ENSMUSG00000092192) #25	Pierce2 (ENSMUSG00000086158) #26	Ccpg1 (ENSMUSG00000034563) #27	Pigb (ENSMUSG00000079469) #28	Pigbos1 (ENSMUSG00000098332)	Rab27a (ENSMUSG00000032202) #29	Khdc3 (ENSMUSG00000092622) #31	Gm20509 (ENSMUSG00000092310)	Rsl24d1 (ENSMUSG00000032215)	Unc13c (ENSMUSG00000062151) #33	Wdr72 (ENSMUSG00000044976) #34	Onecut1 (ENSMUSG00000043013) #35	Atosa (ENSMUSG00000034858) #36	Arpp19 (ENSMUSG00000007656) ##37
Mus_C	ANCESTRAL SPECIES	8	ENSGT00520000062301 #7	ENSGT00940000160579 #8	ENSGT00940000157602 #9	ENSGT00940000160582 #10	ENSGT00940000158898 #11	ENSGT00950000183065.D #12	ENSGT00950000183065.A.d.b #13	ENSGT00950000183065.A.d.a #14	ENSGT00940000154489.A #15	ENSGT00940000155047 #16	ENSGT00940000158889 #17	ENSGT00730000111210 #18	ENSGT00390000018333 #19	ENSGT01050000244970.b #20	ENSGT00940000158905 #21	ENSGT00940000155943.a #22	ENSGT00530000063948.b #23	ENSGT00390000004930 #25	ENSGT00940000154745.b #26	ENSGT00940000160497 #27	ENSGT00950000183090.A #28	ENSGT00940000156218 #29	ENSGT00940000162601.c #31	ENSGT00950000183105.B.a.a	ENSGT00940000155174 #33	ENSGT00940000160298 #34	ENSGT00950000183103.c #35	ENSGT00940000157573 #36	ENSGT00940000154555.b.bb.b #37	ENSGT00940000155347.a.b	ENSGT00940000157971
Steppe mouse	MODERN SPECIES	3354			Aqp9 (ENSMSIG00000030218) #10	Aldh1a2 (ENSMSIG00000030205) #11	Polr2m (ENSMSIG00000030194) #12	Myzap (ENSMSIG00000030165) #14	Cgnl1 (ENSMSIG00000030124) #15	ENSMSIG00000030122	ENSMSIG00000030117	Tcf12 (ENSMSIG00000030111) #16	Zfp280d (ENSMSIG00000030068) #17	Mns1 (ENSMSIG00000030064) #18	Tex9 (ENSMSIG00000030057) #19	Rfx7 (ENSMSIG00000030032) #20	ENSMSIG00000030016 #21	Prtg (ENSMSIG00000030011) #22	Pygo1 (ENSMSIG00000030007) #23	Dnaaf4 (ENSMSIG00000029999) #25	Pierce2 (ENSMSIG00000029997) #26	Ccpg1 (ENSMSIG00000029989) #27	Pigb (ENSMSIG00000029969) #28	Rab27a (ENSMSIG00000029968) #29	Khdc3 (ENSMSIG00000029967) #31	ENSMSIG00000029963	Unc13c (ENSMSIG00000029945) #33	ENSMSIG00000029938	Wdr72 (ENSMSIG00000029906) #34	Onecut1 (ENSMSIG00000029899) #35	Atosa (ENSMSIG00000029880) #36	ENSMSIG00000029874 #37	Myo5a (ENSMSIG00000029745)
spretus	MODERN SPECIES	18	MGP_SPRETEiJ_G0033544 #7	Adam10 (MGP_SPRETEiJ_G0033545) #8	Lipc (MGP_SPRETEiJ_G0033546) #9	Aqp9 (MGP_SPRETEiJ_G0033547) #10	Aldh1a2 (MGP_SPRETEiJ_G0033548) #11	MGP_SPRETEiJ_G0033549 #12	MGP_SPRETEiJ_G0033550 #13	Myzap (MGP_SPRETEiJ_G0033551) #14	Cgnl1 (MGP_SPRETEiJ_G0033552) #15	Tcf12 (MGP_SPRETEiJ_G0033553) #16	Zfp280d (MGP_SPRETEiJ_G0033554) #17	Mns1 (MGP_SPRETEiJ_G0033555) #18	Tex9 (MGP_SPRETEiJ_G0033556) #19	Rfx7 (MGP_SPRETEiJ_G0033557) #20	MGP_SPRETEiJ_G0033558 #21	Prtg (MGP_SPRETEiJ_G0033559) #22	Pygo1 (MGP_SPRETEiJ_G0033560) #23	MGP_SPRETEiJ_G0033561 #25	MGP_SPRETEiJ_G0033562 #25	Pierce2 (MGP_SPRETEiJ_G0033563) #26	Ccpg1 (MGP_SPRETEiJ_G0033564) #27	Pigb (MGP_SPRETEiJ_G0033565) #28	Rab27a (MGP_SPRETEiJ_G0033566) #29	Khdc3 (MGP_SPRETEiJ_G0033567) #31	MGP_SPRETEiJ_G0033568 #31	Rsl24d1 (MGP_SPRETEiJ_G0033569)	Unc13c (MGP_SPRETEiJ_G0033570) #33	Wdr72 (MGP_SPRETEiJ_G0033571) #34	Onecut1 (MGP_SPRETEiJ_G0033572) #35	Atosa (MGP_SPRETEiJ_G0033573) #36	MGP_SPRETEiJ_G0033574 #37
Ryukyu mouse	MODERN SPECIES	18	MGP_CAROLIEiJ_G0032406 #7	Adam10 (MGP_CAROLIEiJ_G0032407) #8	Lipc (MGP_CAROLIEiJ_G0032408) #9	Aqp9 (MGP_CAROLIEiJ_G0032409) #10	Aldh1a2 (MGP_CAROLIEiJ_G0032410) #11	Polr2m (MGP_CAROLIEiJ_G0032411) #12	MGP_CAROLIEiJ_G0032412 #13	Myzap (MGP_CAROLIEiJ_G0032413) #14	Cgnl1 (MGP_CAROLIEiJ_G0032414) #15	Tcf12 (MGP_CAROLIEiJ_G0032415) #16	Zfp280d (MGP_CAROLIEiJ_G0032416) #17	Mns1 (MGP_CAROLIEiJ_G0032417) #18	Tex9 (MGP_CAROLIEiJ_G0032418) #19	Rfx7 (MGP_CAROLIEiJ_G0032419) #20	MGP_CAROLIEiJ_G0032420 #21	Prtg (MGP_CAROLIEiJ_G0032421) #22	Pygo1 (MGP_CAROLIEiJ_G0032422) #23	MGP_CAROLIEiJ_G0032423 #25	MGP_CAROLIEiJ_G0032424 #25	Pierce2 (MGP_CAROLIEiJ_G0032425) #26	Ccpg1 (MGP_CAROLIEiJ_G0032426) #27	Pigb (MGP_CAROLIEiJ_G0032427) #28	Rab27a (MGP_CAROLIEiJ_G0032428) #29	MGP_CAROLIEiJ_G0032429 #31	MGP_CAROLIEiJ_G0032430 #31	Rsl24d1 (MGP_CAROLIEiJ_G0032431)	Unc13c (MGP_CAROLIEiJ_G0032432) #33	Wdr72 (MGP_CAROLIEiJ_G0032433) #34	Onecut1 (MGP_CAROLIEiJ_G0032434) #35	Atosa (MGP_CAROLIEiJ_G0032435) #36	MGP_CAROLIEiJ_G0032436 #37