Euarchontoglires_A ANCESTRAL SPECIES 3 ENSGT00390000016607.a ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT00910000148328 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00950000183105.B.b ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b Glires ANCESTRAL SPECIES 15 ENSGT00390000016607.a ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT00910000148328 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b ENSGT00940000157971 Lagomorpha ANCESTRAL SPECIES 7 ENSGT00940000157691 ENSGT00940000156573 ENSGT00390000016607.a ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A ENSGT00940000154489.A ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00950000183105.B.b ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.a.a.c ENSGT00940000155347.a.b ENSGT00940000157971 Pika MODERN SPECIES 971 PRTG (ENSOPRG00000014340) #22 PYGO1 (ENSOPRG00000014331) #23 Rabbit MODERN SPECIES 8 AQP9 (ENSOCUG00000009796) ALDH1A2 (ENSOCUG00000016942) POLR2M (ENSOCUG00000036974) MYZAP (ENSOCUG00000002296) CGNL1 (ENSOCUG00000003637) ENSOCUG00000036890 TCF12 (ENSOCUG00000017812) ENSOCUG00000023894 ENSOCUG00000025662 ZNF280D (ENSOCUG00000015094) MNS1 (ENSOCUG00000012282) TEX9 (ENSOCUG00000012275) ENSOCUG00000033842 RFX7 (ENSOCUG00000013678) NEDD4 (ENSOCUG00000006856) ENSOCUG00000027152 #22 PYGO1 (ENSOCUG00000011752) #23 DNAAF4 (ENSOCUG00000025031) PIERCE2 (ENSOCUG00000039060) CCPG1 (ENSOCUG00000007468) PIGB (ENSOCUG00000007457) PIGBOS1 (ENSOCUG00000034355) RAB27A (ENSOCUG00000007452) RSL24D1 (ENSOCUG00000007447) ENSOCUG00000039000 ENSOCUG00000004057 UNC13C (ENSOCUG00000016041) ENSOCUG00000031056 WDR72 (ENSOCUG00000006258) ONECUT1 (ENSOCUG00000003312) ATOSA (ENSOCUG00000007681) Rodentia ANCESTRAL SPECIES 3 ENSGT00390000016607.a ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT00910000148328 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b ENSGT00940000157971 Rodentia_B ANCESTRAL SPECIES 11 ENSGT00940000156573 ENSGT00390000016607.a ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b ENSGT00940000157971 Myomorpha ANCESTRAL SPECIES 25 ENSGT00940000156573 ENSGT00390000016607.a ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b ENSGT00940000157971 Muroidea ANCESTRAL SPECIES 23 ENSGT00390000016607.a ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A.d.b ENSGT00950000183065.A.d.a ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b ENSGT00940000157971 Muroidea_A ANCESTRAL SPECIES 6 ENSGT00520000062301 ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A.d.b ENSGT00950000183065.A.d.a ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00940000162601 ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b Cricetidae ANCESTRAL SPECIES 4 ENSGT00390000016607.a ENSGT00520000062301 ENSGT00940000160579.c ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A.c ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00940000156218 ENSGT00940000162601 ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b ENSGT00940000157971 Cricetinae ANCESTRAL SPECIES 6 ENSGT00940000156573 ENSGT00390000016607.a ENSGT00940000160579.c ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A.c ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00940000156218 ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b ENSGT00940000157971 ENSGT01000000214413.a Chinese hamster chok1gshd MODERN SPECIES 284 Adam10 (ENSCGRG00001024542) ENSCGRG00001006102 Lipc (ENSCGRG00001023377) Aqp9 (ENSCGRG00001002590) Aldh1a2 (ENSCGRG00001024783) Polr2m (ENSCGRG00001022054) Myzap (ENSCGRG00001022094) ENSCGRG00001020102 Cgnl1 (ENSCGRG00001010637) Tcf12 (ENSCGRG00001017769) Zfp280d (ENSCGRG00001015255) Mns1 (ENSCGRG00001024903) Tex9 (ENSCGRG00001017918) Rfx7 (ENSCGRG00001011679) Nedd4 (ENSCGRG00001024328) Prtg (ENSCGRG00001019030) #22 Pygo1 (ENSCGRG00001005599) #23 Dnaaf4 (ENSCGRG00001024405) Pierce2 (ENSCGRG00001022312) Ccpg1 (ENSCGRG00001021450) Pigb (ENSCGRG00001018673) Rab27a (ENSCGRG00001015778) ENSCGRG00001009123 Unc13c (ENSCGRG00001010273) Wdr72 (ENSCGRG00001003397) Onecut1 (ENSCGRG00001023722) Atosa (ENSCGRG00001021946) ENSCGRG00001016776 Myo5a (ENSCGRG00001016350) Myo5c (ENSCGRG00001004401) Gnb5 (ENSCGRG00001012527) Golden Hamster MODERN SPECIES 658 Zfp280d (ENSMAUG00000019648) Mns1 (ENSMAUG00000019303) Tex9 (ENSMAUG00000004928) Rfx7 (ENSMAUG00000016583) Nedd4 (ENSMAUG00000003802) Prtg (ENSMAUG00000021146) #22 Pygo1 (ENSMAUG00000007751) #23 Dnaaf4 (ENSMAUG00000012975) Pierce2 (ENSMAUG00000021207) Ccpg1 (ENSMAUG00000021179) Pigb (ENSMAUG00000009724) Rab27a (ENSMAUG00000013740) Rsl24d1 (ENSMAUG00000011146) ENSMAUG00000012949 Unc13c (ENSMAUG00000014928) Wdr72 (ENSMAUG00000019773) Onecut1 (ENSMAUG00000017863) Atosa (ENSMAUG00000017090) ENSMAUG00000013200 Myo5a (ENSMAUG00000001195) Myo5c (ENSMAUG00000019952) Cricetidae_B ANCESTRAL SPECIES 24 ENSGT00390000016607.a ENSGT00520000062301 ENSGT00940000160579.c ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A.c ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00940000156218 ENSGT00940000162601 ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000154555.b.bb.a ENSGT00940000155347.a.b Prairie vole MODERN SPECIES 13 Sltm (ENSMOCG00000012419) Mindy2 (ENSMOCG00000007504) Adam10 (ENSMOCG00000016984) Lipc (ENSMOCG00000021852) Aqp9 (ENSMOCG00000019598) Aldh1a2 (ENSMOCG00000015827) ENSMOCG00000008322 ENSMOCG00000021256 Cgnl1 (ENSMOCG00000011190) Tcf12 (ENSMOCG00000022170) Zfp280d (ENSMOCG00000022695) Mns1 (ENSMOCG00000012560) Tex9 (ENSMOCG00000006358) Rfx7 (ENSMOCG00000002168) Nedd4 (ENSMOCG00000014551) Prtg (ENSMOCG00000021980) #22 Pygo1 (ENSMOCG00000012375) #23 Dnaaf4 (ENSMOCG00000015951) Pierce2 (ENSMOCG00000012469) Ccpg1 (ENSMOCG00000003089) Pigb (ENSMOCG00000002149) Rab27a (ENSMOCG00000021412) ENSMOCG00000006005 ENSMOCG00000003818 Unc13c (ENSMOCG00000019135) ENSMOCG00000021666 Wdr72 (ENSMOCG00000011643) Onecut1 (ENSMOCG00000002613) Atosa (ENSMOCG00000004794) ENSMOCG00000006583 ENSMOCG00000007481 Northern American deer mouse MODERN SPECIES 20 Adam10 (ENSPEMG00000023786) Lipc (ENSPEMG00000021222) Aqp9 (ENSPEMG00000020420) Aldh1a2 (ENSPEMG00000017997) Polr2m (ENSPEMG00000027979) ENSPEMG00000029794 Myzap (ENSPEMG00000021267) Cgnl1 (ENSPEMG00000021122) Tcf12 (ENSPEMG00000016404) Zfp280d (ENSPEMG00000020404) Mns1 (ENSPEMG00000022047) Tex9 (ENSPEMG00000023878) ENSPEMG00000028980 Rfx7 (ENSPEMG00000011329) Nedd4 (ENSPEMG00000021099) Prtg (ENSPEMG00000021228) #22 Pygo1 (ENSPEMG00000005028) #23 Dnaaf4 (ENSPEMG00000014726) Pierce2 (ENSPEMG00000023319) Ccpg1 (ENSPEMG00000016732) Pigb (ENSPEMG00000006147) ENSPEMG00000029450 Rab27a (ENSPEMG00000020468) ENSPEMG00000030185 Rsl24d1 (ENSPEMG00000000267) Unc13c (ENSPEMG00000006393) Wdr72 (ENSPEMG00000020427) Onecut1 (ENSPEMG00000000989) Atosa (ENSPEMG00000016799) Arpp19 (ENSPEMG00000028092) Myo5a (ENSPEMG00000012848) Murinae ANCESTRAL SPECIES 3 ENSGT00520000062301 ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A.d.b ENSGT00950000183065.A.d.a ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00940000162601 ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b Mus ANCESTRAL SPECIES 4 ENSGT00520000062301 ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A.d.b ENSGT00950000183065.A.d.a ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00940000162601 ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b Mus_A ANCESTRAL SPECIES 4 ENSGT00520000062301 ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A.d.b ENSGT00950000183065.A.d.a ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00940000162601.c ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b Mus_B ANCESTRAL SPECIES 3 ENSGT00520000062301 ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A.d.b ENSGT00950000183065.A.d.a ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00940000162601.c ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b Mouse MODERN SPECIES 18 Sltm (ENSMUSG00000032212) Mindy2 (ENSMUSG00000042444) Adam10 (ENSMUSG00000054693) Lipc (ENSMUSG00000032207) Aqp9 (ENSMUSG00000032204) Aldh1a2 (ENSMUSG00000013584) Polr2m (ENSMUSG00000032199) Myzap (ENSMUSG00000041361) Cgnl1 (ENSMUSG00000032232) Tcf12 (ENSMUSG00000032228) Zfp280d (ENSMUSG00000038535) Mns1 (ENSMUSG00000032221) Tex9 (ENSMUSG00000090626) Rfx7 (ENSMUSG00000037674) Nedd4 (ENSMUSG00000032216) Prtg (ENSMUSG00000036030) #22 Pygo1 (ENSMUSG00000034910) #23 Dnaaf4 (ENSMUSG00000092192) Pierce2 (ENSMUSG00000086158) Ccpg1 (ENSMUSG00000034563) Pigb (ENSMUSG00000079469) Pigbos1 (ENSMUSG00000098332) Rab27a (ENSMUSG00000032202) Khdc3 (ENSMUSG00000092622) Gm20509 (ENSMUSG00000092310) Rsl24d1 (ENSMUSG00000032215) Unc13c (ENSMUSG00000062151) Wdr72 (ENSMUSG00000044976) Onecut1 (ENSMUSG00000043013) Atosa (ENSMUSG00000034858) Arpp19 (ENSMUSG00000007656) Mus_C ANCESTRAL SPECIES 8 ENSGT00520000062301 ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A.d.b ENSGT00950000183065.A.d.a ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00940000156218 ENSGT00940000162601.c ENSGT00950000183105.B.a.a ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.bb.b ENSGT00940000155347.a.b ENSGT00940000157971 Steppe mouse MODERN SPECIES 3354 Aqp9 (ENSMSIG00000030218) Aldh1a2 (ENSMSIG00000030205) Polr2m (ENSMSIG00000030194) Myzap (ENSMSIG00000030165) Cgnl1 (ENSMSIG00000030124) ENSMSIG00000030122 ENSMSIG00000030117 Tcf12 (ENSMSIG00000030111) Zfp280d (ENSMSIG00000030068) Mns1 (ENSMSIG00000030064) Tex9 (ENSMSIG00000030057) Rfx7 (ENSMSIG00000030032) ENSMSIG00000030016 Prtg (ENSMSIG00000030011) #22 Pygo1 (ENSMSIG00000030007) #23 Dnaaf4 (ENSMSIG00000029999) Pierce2 (ENSMSIG00000029997) Ccpg1 (ENSMSIG00000029989) Pigb (ENSMSIG00000029969) Rab27a (ENSMSIG00000029968) Khdc3 (ENSMSIG00000029967) ENSMSIG00000029963 Unc13c (ENSMSIG00000029945) ENSMSIG00000029938 Wdr72 (ENSMSIG00000029906) Onecut1 (ENSMSIG00000029899) Atosa (ENSMSIG00000029880) ENSMSIG00000029874 Myo5a (ENSMSIG00000029745) spretus MODERN SPECIES 18 MGP_SPRETEiJ_G0033544 Adam10 (MGP_SPRETEiJ_G0033545) Lipc (MGP_SPRETEiJ_G0033546) Aqp9 (MGP_SPRETEiJ_G0033547) Aldh1a2 (MGP_SPRETEiJ_G0033548) MGP_SPRETEiJ_G0033549 MGP_SPRETEiJ_G0033550 Myzap (MGP_SPRETEiJ_G0033551) Cgnl1 (MGP_SPRETEiJ_G0033552) Tcf12 (MGP_SPRETEiJ_G0033553) Zfp280d (MGP_SPRETEiJ_G0033554) Mns1 (MGP_SPRETEiJ_G0033555) Tex9 (MGP_SPRETEiJ_G0033556) Rfx7 (MGP_SPRETEiJ_G0033557) MGP_SPRETEiJ_G0033558 Prtg (MGP_SPRETEiJ_G0033559) #22 Pygo1 (MGP_SPRETEiJ_G0033560) #23 MGP_SPRETEiJ_G0033561 MGP_SPRETEiJ_G0033562 Pierce2 (MGP_SPRETEiJ_G0033563) Ccpg1 (MGP_SPRETEiJ_G0033564) Pigb (MGP_SPRETEiJ_G0033565) Rab27a (MGP_SPRETEiJ_G0033566) Khdc3 (MGP_SPRETEiJ_G0033567) MGP_SPRETEiJ_G0033568 Rsl24d1 (MGP_SPRETEiJ_G0033569) Unc13c (MGP_SPRETEiJ_G0033570) Wdr72 (MGP_SPRETEiJ_G0033571) Onecut1 (MGP_SPRETEiJ_G0033572) Atosa (MGP_SPRETEiJ_G0033573) MGP_SPRETEiJ_G0033574 Ryukyu mouse MODERN SPECIES 18 MGP_CAROLIEiJ_G0032406 Adam10 (MGP_CAROLIEiJ_G0032407) Lipc (MGP_CAROLIEiJ_G0032408) Aqp9 (MGP_CAROLIEiJ_G0032409) Aldh1a2 (MGP_CAROLIEiJ_G0032410) Polr2m (MGP_CAROLIEiJ_G0032411) MGP_CAROLIEiJ_G0032412 Myzap (MGP_CAROLIEiJ_G0032413) Cgnl1 (MGP_CAROLIEiJ_G0032414) Tcf12 (MGP_CAROLIEiJ_G0032415) Zfp280d (MGP_CAROLIEiJ_G0032416) Mns1 (MGP_CAROLIEiJ_G0032417) Tex9 (MGP_CAROLIEiJ_G0032418) Rfx7 (MGP_CAROLIEiJ_G0032419) MGP_CAROLIEiJ_G0032420 Prtg (MGP_CAROLIEiJ_G0032421) #22 Pygo1 (MGP_CAROLIEiJ_G0032422) #23 MGP_CAROLIEiJ_G0032423 MGP_CAROLIEiJ_G0032424 Pierce2 (MGP_CAROLIEiJ_G0032425) Ccpg1 (MGP_CAROLIEiJ_G0032426) Pigb (MGP_CAROLIEiJ_G0032427) Rab27a (MGP_CAROLIEiJ_G0032428) MGP_CAROLIEiJ_G0032429 MGP_CAROLIEiJ_G0032430 Rsl24d1 (MGP_CAROLIEiJ_G0032431) Unc13c (MGP_CAROLIEiJ_G0032432) Wdr72 (MGP_CAROLIEiJ_G0032433) Onecut1 (MGP_CAROLIEiJ_G0032434) Atosa (MGP_CAROLIEiJ_G0032435) MGP_CAROLIEiJ_G0032436 Shrew mouse MODERN SPECIES 1 MGP_PahariEiJ_G0015270 Adam10 (MGP_PahariEiJ_G0015271) Lipc (MGP_PahariEiJ_G0015272) MGP_PahariEiJ_G0015273 Aldh1a2 (MGP_PahariEiJ_G0015274) Polr2m (MGP_PahariEiJ_G0015275) MGP_PahariEiJ_G0015276 Myzap (MGP_PahariEiJ_G0015277) Cgnl1 (MGP_PahariEiJ_G0015278) Tcf12 (MGP_PahariEiJ_G0015279) Zfp280d (MGP_PahariEiJ_G0015280) Mns1 (MGP_PahariEiJ_G0015281) Tex9 (MGP_PahariEiJ_G0015282) MGP_PahariEiJ_G0015283 MGP_PahariEiJ_G0015284 Prtg (MGP_PahariEiJ_G0015285) #22 Pygo1 (MGP_PahariEiJ_G0015286) #23 MGP_PahariEiJ_G0015287 MGP_PahariEiJ_G0015288 Pierce2 (MGP_PahariEiJ_G0015289) Ccpg1 (MGP_PahariEiJ_G0015290) Pigb (MGP_PahariEiJ_G0015291) Rab27a (MGP_PahariEiJ_G0015292) MGP_PahariEiJ_G0015293 MGP_PahariEiJ_G0015294 MGP_PahariEiJ_G0015295 Unc13c (MGP_PahariEiJ_G0015296) Wdr72 (MGP_PahariEiJ_G0015297) Onecut1 (MGP_PahariEiJ_G0015298) Atosa (MGP_PahariEiJ_G0015299) MGP_PahariEiJ_G0015300 Rat MODERN SPECIES 18 AABR07038881.1 (ENSRNOG00000038181) ENSRNOG00000070532 Aqp9 (ENSRNOG00000061883) Aldh1a2 (ENSRNOG00000055049) Polr2m (ENSRNOG00000057676) Cgnl1 (ENSRNOG00000054080) Tcf12 (ENSRNOG00000057754) Zfp280d (ENSRNOG00000055631) ENSRNOG00000070052 Mns1 (ENSRNOG00000057867) Tex9 (ENSRNOG00000059702) Rfx7 (ENSRNOG00000060367) Nedd4 (ENSRNOG00000058898) AABR07070669.1 (ENSRNOG00000056409) ENSRNOG00000064605 Prtg (ENSRNOG00000055251) #22 Pygo1 (ENSRNOG00000066086) #23 Dnaaf4 (ENSRNOG00000056654) Pierce2 (ENSRNOG00000052869) Ccpg1 (ENSRNOG00000053428) Pigb (ENSRNOG00000059622) Pigbos1 (ENSRNOG00000067122) Rab27a (ENSRNOG00000052499) Khdc3 (ENSRNOG00000054460) Rsl24d1 (ENSRNOG00000052787) AC128582.1 (ENSRNOG00000051988) ENSRNOG00000069906 Unc13c (ENSRNOG00000056612) LOC100912027 (ENSRNOG00000070028) Wdr72 (ENSRNOG00000054889) Onecut1 (ENSRNOG00000008095) Upper Galilee mountains blind mole rat MODERN SPECIES 479 Aqp9 (ENSNGAG00000022209) Aldh1a2 (ENSNGAG00000016135) ENSNGAG00000023815 Cgnl1 (ENSNGAG00000023531) Tcf12 (ENSNGAG00000019165) Zfp280d (ENSNGAG00000018877) Mns1 (ENSNGAG00000001019) ENSNGAG00000019601 Rfx7 (ENSNGAG00000021696) Nedd4 (ENSNGAG00000021617) Prtg (ENSNGAG00000016273) #22 Pygo1 (ENSNGAG00000013925) #23 Dnaaf4 (ENSNGAG00000005170) Pierce2 (ENSNGAG00000019770) Ccpg1 (ENSNGAG00000020929) Pigb (ENSNGAG00000017307) Rab27a (ENSNGAG00000022849) ENSNGAG00000023571 Lesser Egyptian jerboa MODERN SPECIES 92 Rnf111 (ENSJJAG00000013647) Sltm (ENSJJAG00000006970) Mindy2 (ENSJJAG00000015879) Adam10 (ENSJJAG00000020483) Lipc (ENSJJAG00000016366) Aqp9 (ENSJJAG00000003289) Aldh1a2 (ENSJJAG00000019176) Myzap (ENSJJAG00000003683) Cgnl1 (ENSJJAG00000002516) Tcf12 (ENSJJAG00000014280) Zfp280d (ENSJJAG00000010802) Mns1 (ENSJJAG00000006548) ENSJJAG00000008835 Rfx7 (ENSJJAG00000004499) Nedd4 (ENSJJAG00000023014) Prtg (ENSJJAG00000011718) #22 Pygo1 (ENSJJAG00000012455) #23 ENSJJAG00000018037 Pierce2 (ENSJJAG00000014904) Ccpg1 (ENSJJAG00000009513) Pigb (ENSJJAG00000011422) Rab27a (ENSJJAG00000023800) ENSJJAG00000010150 Unc13c (ENSJJAG00000022823) ENSJJAG00000022225 Onecut1 (ENSJJAG00000021280) Atosa (ENSJJAG00000011771) ENSJJAG00000014481 Myo5a (ENSJJAG00000012973) Myo5c (ENSJJAG00000020302) Gnb5 (ENSJJAG00000023631) Kangaroo rat MODERN SPECIES 330 Rnf111 (ENSDORG00000006942) Sltm (ENSDORG00000007463) Mindy2 (ENSDORG00000007461) Adam10 (ENSDORG00000007459) Aqp9 (ENSDORG00000007593) Aldh1a2 (ENSDORG00000011893) ENSDORG00000026281 Myzap (ENSDORG00000015312) Cgnl1 (ENSDORG00000026162) Tcf12 (ENSDORG00000007054) Zfp280d (ENSDORG00000010891) Mns1 (ENSDORG00000004541) ENSDORG00000004539 Rfx7 (ENSDORG00000024632) Nedd4 (ENSDORG00000008857) Prtg (ENSDORG00000012398) #22 Pygo1 (ENSDORG00000028210) #23 Dnaaf4 (ENSDORG00000012067) Pierce2 (ENSDORG00000029919) Ccpg1 (ENSDORG00000028418) Pigb (ENSDORG00000004237) Rab27a (ENSDORG00000029758) Rsl24d1 (ENSDORG00000030252) Unc13c (ENSDORG00000005687) Wdr72 (ENSDORG00000003029) Onecut1 (ENSDORG00000025825) Atosa (ENSDORG00000011323) ENSDORG00000024895 ENSDORG00000003560 Myo5c (ENSDORG00000003559) Gnb5 (ENSDORG00000004080) Rodentia_A ANCESTRAL SPECIES 2 ENSGT00390000016607.a ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT00910000148328 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00950000183105.B.b ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.cb ENSGT00940000155347.a.b ENSGT00940000157971 Sciuridae ANCESTRAL SPECIES 11 ENSGT00390000016607.a ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT00910000148328 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00950000183105.B.b.bb ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.cb ENSGT00940000155347.a.b ENSGT00940000157971 Marmotini ANCESTRAL SPECIES 9 ENSGT00960000192699 ENSGT00390000016607.a ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00940000156218 ENSGT00950000183105.B.b.bb ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.cb ENSGT00940000155347.a.b ENSGT00940000157971 ENSGT01000000214413.a Marmotini_b ANCESTRAL SPECIES 4 ENSGT00390000016607.a ENSGT00940000160579 ENSGT00940000157602 ENSGT00940000160582 ENSGT00940000158898 ENSGT00950000183065.D ENSGT00950000183065.A ENSGT00940000154489.A ENSGT00940000155047 ENSGT00940000158889 ENSGT00730000111210 ENSGT00390000018333 ENSGT00390000006192.u ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00940000156218 ENSGT00950000183105.B.b.bb ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.cb ENSGT00940000155347.a.b ENSGT00940000157971 ENSGT01000000214413.a Arctic ground squirrel MODERN SPECIES 578 RFX7 (ENSUPAG00010002994) NEDD4 (ENSUPAG00010003034) PRTG (ENSUPAG00010003066) #22 PYGO1 (ENSUPAG00010003094) #23 ENSUPAG00010003116 ENSUPAG00010003118 ENSUPAG00010003122 PIERCE2 (ENSUPAG00010003142) CCPG1 (ENSUPAG00010003151) PIGB (ENSUPAG00010003199) RAB27A (ENSUPAG00010003207) Squirrel MODERN SPECIES 71 MINDY2 (ENSSTOG00000000569) ADAM10 (ENSSTOG00000000561) LIPC (ENSSTOG00000000547) AQP9 (ENSSTOG00000014131) ALDH1A2 (ENSSTOG00000000292) POLR2M (ENSSTOG00000026874) MYZAP (ENSSTOG00000027285) CGNL1 (ENSSTOG00000015855) ENSSTOG00000001523 ZNF280D (ENSSTOG00000003775) MNS1 (ENSSTOG00000006850) TEX9 (ENSSTOG00000003051) ENSSTOG00000029745 RFX7 (ENSSTOG00000027249) NEDD4 (ENSSTOG00000005877) PRTG (ENSSTOG00000009243) #22 PYGO1 (ENSSTOG00000009236) #23 ENSSTOG00000028579 DNAAF4 (ENSSTOG00000021598) PIERCE2 (ENSSTOG00000003853) CCPG1 (ENSSTOG00000008480) PIGB (ENSSTOG00000008450) RAB27A (ENSSTOG00000025489) RSL24D1 (ENSSTOG00000009408) UNC13C (ENSSTOG00000026192) WDR72 (ENSSTOG00000015381) ONECUT1 (ENSSTOG00000028083) ATOSA (ENSSTOG00000024505) ENSSTOG00000003677 MYO5A (ENSSTOG00000007106) MYO5C (ENSSTOG00000014041) Alpin marmot MODERN SPECIES 7 LIPC (ENSMMMG00000014432) AQP9 (ENSMMMG00000014447) ALDH1A2 (ENSMMMG00000014471) POLR2M (ENSMMMG00000014496) MYZAP (ENSMMMG00000014508) CGNL1 (ENSMMMG00000014543) TCF12 (ENSMMMG00000014657) ENSMMMG00000014979 ZNF280D (ENSMMMG00000014982) MNS1 (ENSMMMG00000015043) TEX9 (ENSMMMG00000015071) ENSMMMG00000015145 RFX7 (ENSMMMG00000015149) NEDD4 (ENSMMMG00000015178) ENSMMMG00000015209 PRTG (ENSMMMG00000015217) #22 PYGO1 (ENSMMMG00000015245) #23 DNAAF4 (ENSMMMG00000015251) PIERCE2 (ENSMMMG00000015276) CCPG1 (ENSMMMG00000015280) RAB27A (ENSMMMG00000015328) ENSMMMG00000015334 UNC13C (ENSMMMG00000015358) ENSMMMG00000015421 ONECUT1 (ENSMMMG00000015445) ATOSA (ENSMMMG00000015461) ENSMMMG00000015496 MYO5A (ENSMMMG00000015509) MYO5C (ENSMMMG00000015665) GNB5 (ENSMMMG00000015706) ENSMMMG00000015752 Eurasian red squirrel MODERN SPECIES 11 ENSSVLG00005011609 LIPC (ENSSVLG00005011202) AQP9 (ENSSVLG00005011049) ALDH1A2 (ENSSVLG00005010692) ENSSVLG00005010581 MYZAP (ENSSVLG00005010520) CGNL1 (ENSSVLG00005010468) TCF12 (ENSSVLG00005010240) ZNF280D (ENSSVLG00005010148) MNS1 (ENSSVLG00005010076) TEX9 (ENSSVLG00005009884) ENSSVLG00005009847 ENSSVLG00005009806 RFX7 (ENSSVLG00005009779) NEDD4 (ENSSVLG00005009303) PRTG (ENSSVLG00005009076) #22 PYGO1 (ENSSVLG00005009006) #23 DNAAF4 (ENSSVLG00005008874) PIERCE2 (ENSSVLG00005008825) ENSSVLG00005008737 PIGB (ENSSVLG00005008710) PIGBOS1 (ENSSVLG00005008699) RAB27A (ENSSVLG00005008649) ENSSVLG00005008601 UNC13C (ENSSVLG00005008250) ENSSVLG00005008170 WDR72 (ENSSVLG00005007884) ONECUT1 (ENSSVLG00005007833) ATOSA (ENSSVLG00005007704) ENSSVLG00005007651 ARPP19 (ENSSVLG00005007620) Hystricomorpha ANCESTRAL SPECIES 15 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00760000120436 ENSGT00940000156218 ENSGT00950000183105.B.a.a.s ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.cb ENSGT00940000155347.a.b ENSGT00940000157971 Hystricomorpha_a ANCESTRAL SPECIES 18 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00940000156218 ENSGT00950000183105.B.a.a.s ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.cb ENSGT00940000155347.a.b ENSGT00940000157971 ENSGT01000000214413.a Hystricomorpha_b ANCESTRAL SPECIES 18 ENSGT01050000244970.b ENSGT00940000158905 ENSGT00940000155943.a #22 ENSGT00530000063948.b #23 ENSGT00390000004930 ENSGT00940000154745.b ENSGT00940000160497 ENSGT00950000183090.A ENSGT00940000156218 ENSGT00950000183105.B.a.a.s ENSGT00940000155174 ENSGT00940000160298 ENSGT00950000183103.c ENSGT00940000157573 ENSGT00940000154555.b.cb ENSGT00940000155347.a.b ENSGT00940000157971 ENSGT01000000214413.a Long-tailed chinchilla MODERN SPECIES 116 RFX7 (ENSCLAG00000007236) NEDD4 (ENSCLAG00000014035) PRTG (ENSCLAG00000009566) #22 PYGO1 (ENSCLAG00000010540) #23 ENSCLAG00000006970 ENSCLAG00000007327 PIERCE2 (ENSCLAG00000007999) CCPG1 (ENSCLAG00000008443) PIGB (ENSCLAG00000009183) RAB27A (ENSCLAG00000006846) RSL24D1 (ENSCLAG00000008785) UNC13C (ENSCLAG00000013173) WDR72 (ENSCLAG00000007300) ONECUT1 (ENSCLAG00000009766) ATOSA (ENSCLAG00000007724) ARPP19 (ENSCLAG00000007027) MYO5A (ENSCLAG00000008057) MYO5C (ENSCLAG00000007222) Degu MODERN SPECIES 146 RFX7 (ENSODEG00000005527) ENSODEG00000006440 NEDD4 (ENSODEG00000006803) ENSODEG00000006547 PRTG (ENSODEG00000006148) #22 ENSODEG00000007713 PYGO1 (ENSODEG00000005615) #23 DNAAF4 (ENSODEG00000007101) PIERCE2 (ENSODEG00000007192) CCPG1 (ENSODEG00000007737) PIGB (ENSODEG00000006748) RAB27A (ENSODEG00000006284) RSL24D1 (ENSODEG00000005430) ENSODEG00000006126 ENSODEG00000019275 ENSODEG00000006149 ONECUT1 (ENSODEG00000007415) ATOSA (ENSODEG00000007975) ENSODEG00000005366 ENSODEG00000019439 Guinea pig MODERN SPECIES 23 RFX7 (ENSCPOG00000034038) NEDD4 (ENSCPOG00000000686) PRTG (ENSCPOG00000001715) #22 PYGO1 (ENSCPOG00000031441) #23 DNAAF4 (ENSCPOG00000023129) PIERCE2 (ENSCPOG00000034404) CCPG1 (ENSCPOG00000011667) PIGB (ENSCPOG00000011660) RAB27A (ENSCPOG00000030394) RSL24D1 (ENSCPOG00000009371) ENSCPOG00000026063 UNC13C (ENSCPOG00000007805) WDR72 (ENSCPOG00000011137) ONECUT1 (ENSCPOG00000026341) ATOSA (ENSCPOG00000014708) ARPP19 (ENSCPOG00000011228) MYO5A (ENSCPOG00000007886) MYO5C (ENSCPOG00000007212) Naked mole-rat female MODERN SPECIES 11 DTWD1 (ENSHGLG00000048935) ATP8B4 (ENSHGLG00000012603) SLC27A2 (ENSHGLG00000011641) HDC (ENSHGLG00000010588) GABPB1 (ENSHGLG00000014271) ENSHGLG00000014701 USP8 (ENSHGLG00000012639) USP50 (ENSHGLG00000043391) TRPM7 (ENSHGLG00000013915) SPPL2A (ENSHGLG00000037024) ENSHGLG00000012462 TNFAIP8L3 (ENSHGLG00000010967) ENSHGLG00000039885 ENSHGLG00000009904 NEDD4 (ENSHGLG00000013198) PRTG (ENSHGLG00000009677) #22 PYGO1 (ENSHGLG00000034526) #23 DNAAF4 (ENSHGLG00000015787) ENSHGLG00000039905 CCPG1 (ENSHGLG00000012053) PIGB (ENSHGLG00000011247) ENSHGLG00000044214 RAB27A (ENSHGLG00000013717) RSL24D1 (ENSHGLG00000043923) ENSHGLG00000039454 UNC13C (ENSHGLG00000006768) WDR72 (ENSHGLG00000010353) ENSHGLG00000001410 ENSHGLG00000015901 ONECUT1 (ENSHGLG00000046426) FAM214A (ENSHGLG00000017408) Tree shrew MODERN SPECIES 3768 PRTG (ENSTBEG00000010820) #22 PYGO1 (ENSTBEG00000010814) #23