Osteoglossocephalai ANCESTRAL SPECIES 677 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 Clupeocephala ANCESTRAL SPECIES 132 ENSGT00940000157352.b ENSGT00390000000002.a.a.a.nb.a ENSGT00390000002137 ENSGT00940000166070 ENSGT00950000186323 ENSGT00940000158371 ENSGT00390000009004.d ENSGT00940000155898 ENSGT00940000159553.b ENSGT00940000163777.b.a.a ##22 ENSGT00940000164725.a.b.b ##23 ENSGT00940000164725.a.a.b ##23 ENSGT00940000165118.b ENSGT00940000165118.a.a.b.a ENSGT00940000159553.a ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00940000164173.b.b.a.b ENSGT00940000160554.b ##24 ENSGT00940000166432.d ENSGT00940000177513 ENSGT00940000156683 ENSGT00940000164468.a.a.b.a.a.a.b ENSGT00940000164983.d.a.a ENSGT00940000163777.a ##22 ENSGT00940000159910 ENSGT01030000235223 ENSGT01060000248588.a.c.a.a ENSGT00940000154903 ENSGT01090000260190 Euteleosteomorpha ANCESTRAL SPECIES 134 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164173.b.a.c.b ENSGT00990000204690 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160629.a ENSGT00940000166282.B ENSGT00940000163701.b.a.a.a.b ENSGT00940000163701.b.a.b ENSGT00940000162009.a ENSGT00950000183136.b.a.b ENSGT00940000166282.A ENSGT00940000166282.C ENSGT00940000163701.b.a.a.a.a ENSGT00940000163701.b.b Acanthomorphata ANCESTRAL SPECIES 53 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00970000198378 #25 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160629.a ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 Euacanthomorphacea ANCESTRAL SPECIES 19 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00970000198378 #25 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160629.a ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 Percomorphaceae ANCESTRAL SPECIES 9 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00970000198378 #25 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 Percomorphaceae_B ANCESTRAL SPECIES 10 ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000177991 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00970000198378 #25 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 Ovalentaria ANCESTRAL SPECIES 11 ENSGT00940000156066.p #7 ENSGT00940000178903 #8 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00970000198378 #25 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 Atherinomorphae ANCESTRAL SPECIES 14 ENSGT00940000156066.p #7 ENSGT00940000178903 #8 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00990000204690 ENSGT00970000198378 #25 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 Cyprinodontiformes ANCESTRAL SPECIES 11 ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000178903 #8 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Aplocheiloidei ANCESTRAL SPECIES 33 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Turquoise killifish MODERN SPECIES 1620 ENSNFUG00015023439 SEZ6A (ENSNFUG00015023466) #12 ENSNFUG00015023996 ENSNFUG00015023998 LHX1B (ENSNFUG00015024003) #13 ACACA (ENSNFUG00015024069) #14 tbx2a (ENSNFUG00015024769) #16 ppm1db (ENSNFUG00015024772) #17 ROBO1 (ENSNFUG00015024808) #18 ENSNFUG00015024915 ROBO2 (ENSNFUG00015024955) #19 ENSNFUG00015025066 ENSNFUG00015025068 PCDH1A (ENSNFUG00015025071) #20 ENSNFUG00015025074 PCDH10 (ENSNFUG00015025075) #22 PCDHAC2 (ENSNFUG00015025077) #23 PCDHAC2 (ENSNFUG00015025079) #24 FAM196B (ENSNFUG00015025082) HRH2 (ENSNFUG00015025084) #27 KCNIP1B (ENSNFUG00015025085) #28 NPM1A (ENSNFUG00015025089) #29 cldn7b (ENSNFUG00015004702) #30 FGF11B (ENSNFUG00015004711) #31 nlgn2b (ENSNFUG00015004757) #32 ENSNFUG00015004876 #33 KDM6BB (ENSNFUG00015004887) #34 tmem88a (ENSNFUG00015004898) #35 PCOLCE (ENSNFUG00015004929) #36 VAMP2 (ENSNFUG00015004991) #37 MPP1 (ENSNFUG00015005016) Mangrove rivulus MODERN SPECIES 22 msi2a (ENSKMAG00000009494) ENSKMAG00000009710 KSR1 (ENSKMAG00000009749) #7 VEZF1 (ENSKMAG00000009800) #9 ENSKMAG00000009815 #10 ENSKMAG00000009874 #11 SEZ6 (ENSKMAG00000010135) #12 lhx1b (ENSKMAG00000010158) #13 acaca (ENSKMAG00000010202) #14 tbx2a (ENSKMAG00000010328) #16 ppm1db (ENSKMAG00000010343) #17 ROBO1 (ENSKMAG00000010382) #18 ENSKMAG00000010481 #19 PCDH1 (ENSKMAG00000010555) #20 ENSKMAG00000010578 ENSKMAG00000010596 #22 ENSKMAG00000010613 #23 PCDHAC2 (ENSKMAG00000010638) #24 ENSKMAG00000010648 #26 HRH2 (ENSKMAG00000010662) #27 kcnip1b (ENSKMAG00000010676) #28 npm1a (ENSKMAG00000010709) #29 cldn7b (ENSKMAG00000010737) #30 ENSKMAG00000010766 #31 ENSKMAG00000010787 #31 ENSKMAG00000010799 nlgn2b (ENSKMAG00000010837) #32 ENSKMAG00000010875 #33 kdm6bb (ENSKMAG00000010892) #34 tmem88a (ENSKMAG00000010911) #35 pcolcea (ENSKMAG00000010926) #36 Cyprinodontoidei ANCESTRAL SPECIES 5 ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000178903 #8 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 NAME_4 ANCESTRAL SPECIES 5 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 ENSGT00530000063582.a Mummichog MODERN SPECIES 2214 glra4b (ENSFHEG00000002776) ENSFHEG00000002824 msi2a (ENSFHEG00000000084) KSR1 (ENSFHEG00000002966) #7 ENSFHEG00000002988 #10 ENSFHEG00000003027 #11 SEZ6 (ENSFHEG00000003172) #12 lhx1b (ENSFHEG00000003203) #13 acaca (ENSFHEG00000003274) #14 ppm1db (ENSFHEG00000003283) #17 ENSFHEG00000003296 #18 ENSFHEG00000003301 #18 ENSFHEG00000003314 #19 ENSFHEG00000003327 PCDH1 (ENSFHEG00000000096) #20 ENSFHEG00000003432 #22 PCDHAC2 (ENSFHEG00000003449) #24 Sheepshead minnow MODERN SPECIES 168 ENSCVAG00000008883 #19 PCDH1 (ENSCVAG00000008897) #20 ENSCVAG00000008901 #22 ENSCVAG00000008913 #23 PCDHAC2 (ENSCVAG00000008923) #24 HRH2 (ENSCVAG00000008936) #27 kcnip1b (ENSCVAG00000008950) #28 npm1a (ENSCVAG00000008960) #29 cldn7b (ENSCVAG00000008965) #30 FGF11 (ENSCVAG00000008999) #31 nlgn2b (ENSCVAG00000009024) #32 ENSCVAG00000009033 #33 kdm6bb (ENSCVAG00000009082) #34 tmem88a (ENSCVAG00000009096) #35 pcolcea (ENSCVAG00000009104) #36 vamp2 (ENSCVAG00000009117) #37 mpp1 (ENSCVAG00000009127) TMLHE (ENSCVAG00000009148) Poeciliinae ANCESTRAL SPECIES 17 ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000178903 #8 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Poecilia ANCESTRAL SPECIES 7 ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000178903 #8 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 NAME_6 ANCESTRAL SPECIES 16 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b.d #19 ENSGT00940000156324.f.b.c #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Sailfin molly MODERN SPECIES 412 ENSPLAG00000001083 #22 ENSPLAG00000001084 #23 PCDHAC2 (ENSPLAG00000001085) #24 HRH2 (ENSPLAG00000001087) #27 kcnip1b (ENSPLAG00000001089) #28 npm1a (ENSPLAG00000001093) #29 cldn7b (ENSPLAG00000001097) #30 ENSPLAG00000001100 #31 Guppy MODERN SPECIES 444 ENSPREG00000000960 #7 ENSPREG00000000973 #8 VEZF1 (ENSPREG00000000999) #9 ENSPREG00000001006 #10 ENSPREG00000001048 #11 SEZ6 (ENSPREG00000001190) #12 ENSPREG00000001213 ##13 acaca (ENSPREG00000001223) #14 ENSPREG00000001395 #16 ppm1db (ENSPREG00000001418) #17 ENSPREG00000001431 ##18 ROBO1 (ENSPREG00000001437) #18 ENSPREG00000001469 #19 PCDH1 (ENSPREG00000001526) #20 ENSPREG00000001556 #21 ENSPREG00000001576 #22 ENSPREG00000001582 #23 PCDHAC2 (ENSPREG00000001597) #24 HRH2 (ENSPREG00000001612) #27 kcnip1b (ENSPREG00000001624) #28 npm1a (ENSPREG00000001647) #29 cldn7b (ENSPREG00000001658) #30 ENSPREG00000001665 #31 nlgn2b (ENSPREG00000001696) #32 ENSPREG00000001729 #33 kdm6bb (ENSPREG00000001746) #34 tmem88a (ENSPREG00000001803) #35 vamp2 (ENSPREG00000001829) #37 mpp1 (ENSPREG00000001845) ENSPREG00000001903 ENSPREG00000001933 Platyfish MODERN SPECIES 2 KSR1 (ENSXMAG00000000598) #7 VEZF1 (ENSXMAG00000021356) #9 ENSXMAG00000026833 #10 ENSXMAG00000000579 #11 SEZ6 (ENSXMAG00000000571) #12 lhx1b (ENSXMAG00000000565) #13 acaca (ENSXMAG00000000487) #14 tbx2a (ENSXMAG00000000486) #16 ppm1db (ENSXMAG00000000484) #17 ENSXMAG00000027104 #18 ROBO2 (ENSXMAG00000000420) #19 ENSXMAG00000026173 PCDH1 (ENSXMAG00000000419) #20 ENSXMAG00000019451 ENSXMAG00000021668 #21 ENSXMAG00000000418 #22 ENSXMAG00000026894 #23 PCDHAC2 (ENSXMAG00000026972) #24 ENSXMAG00000023262 HRH2 (ENSXMAG00000024792) #27 kcnip1b (ENSXMAG00000000405) #28 npm1a (ENSXMAG00000000396) #29 cldn7b (ENSXMAG00000000393) #30 FGF11 (ENSXMAG00000000385) #31 nlgn2b (ENSXMAG00000000369) #32 ENSXMAG00000000366 #33 kdm6bb (ENSXMAG00000000363) #34 tmem88a (ENSXMAG00000024040) #35 pcolcea (ENSXMAG00000000354) #36 vamp2 (ENSXMAG00000000353) #37 mpp1 (ENSXMAG00000004921) Oryzias ANCESTRAL SPECIES 14 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00990000204690 ENSGT00970000198378 #25 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 Oryzias_b ANCESTRAL SPECIES 13 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00990000204690 ENSGT00970000198378 #25 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 Indian medaka MODERN SPECIES 4 ENSOMEG00000006275 KSR1 (ENSOMEG00000006366) #7 VEZF1 (ENSOMEG00000006393) #9 ENSOMEG00000006403 #10 ENSOMEG00000006500 #11 SEZ6 (ENSOMEG00000006541) #12 lhx1b (ENSOMEG00000006567) #13 acaca (ENSOMEG00000006649) #14 ENSOMEG00000000824 #16 ppm1db (ENSOMEG00000006679) #17 ROBO1 (ENSOMEG00000006795) #18 ROBO2 (ENSOMEG00000006879) #19 PCDH1 (ENSOMEG00000006912) #20 ENSOMEG00000006921 ENSOMEG00000006929 #21 ENSOMEG00000006940 #22 ENSOMEG00000006944 #23 PCDHAC2 (ENSOMEG00000006953) #24 ENSOMEG00000006970 HRH2 (ENSOMEG00000006985) #27 kcnip1b (ENSOMEG00000007050) #28 npm1a (ENSOMEG00000007083) #29 cldn7b (ENSOMEG00000007100) #30 ENSOMEG00000000168 #31 nlgn2b (ENSOMEG00000007179) #32 ENSOMEG00000007211 #33 kdm6bb (ENSOMEG00000007268) #34 tmem88a (ENSOMEG00000007296) #35 pcolcea (ENSOMEG00000007308) #36 vamp2 (ENSOMEG00000007317) #37 mpp1 (ENSOMEG00000007364) Javanese ricefish MODERN SPECIES 5 ENSOJAG00000013564 msi2a (ENSOJAG00000013082) ENSOJAG00000013002 KSR1 (ENSOJAG00000012653) #7 VEZF1 (ENSOJAG00000012619) #9 ENSOJAG00000012595 #10 ENSOJAG00000011508 #11 SEZ6 (ENSOJAG00000010565) #12 lhx1b (ENSOJAG00000010453) #13 tbx2a (ENSOJAG00000004628) #16 ppm1db (ENSOJAG00000004615) #17 ROBO1 (ENSOJAG00000003022) #18 ROBO2 (ENSOJAG00000002064) #19 ENSOJAG00000001810 PCDH1 (ENSOJAG00000001796) #20 ENSOJAG00000001794 #22 PCDHAC2 (ENSOJAG00000001757) #24 ENSOJAG00000001738 #25 ENSOJAG00000001724 #26 HRH2 (ENSOJAG00000019508) #27 kcnip1b (ENSOJAG00000019484) #28 npm1a (ENSOJAG00000019410) #29 cldn7b (ENSOJAG00000019397) #30 ENSOJAG00000019367 #31 nlgn2b (ENSOJAG00000019219) #32 ENSOJAG00000019192 #33 tmem88a (ENSOJAG00000019175) #35 pcolcea (ENSOJAG00000019146) #36 vamp2 (ENSOJAG00000019137) #37 TMLHE (ENSOJAG00000019117) mpp1 (ENSOJAG00000019052) Oryzias_a ANCESTRAL SPECIES 2 ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00990000204690 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Chinese medaka MODERN SPECIES 717 ENSOSIG00000019532 KSR1 (ENSOSIG00000019530) #7 VEZF1 (ENSOSIG00000019526) #9 ENSOSIG00000019520 #10 ENSOSIG00000015895 #11 ENSOSIG00000015798 #12 lhx1b (ENSOSIG00000015796) #13 TBX2 (ENSOSIG00000015687) #16 ppm1db (ENSOSIG00000015685) #17 ROBO1 (ENSOSIG00000015563) #18 ROBO2 (ENSOSIG00000014733) #19 PCDH1 (ENSOSIG00000014719) #20 ENSOSIG00000014718 ENSOSIG00000014717 ENSOSIG00000014716 ENSOSIG00000014715 #22 ENSOSIG00000014714 #23 PCDHAC2 (ENSOSIG00000014713) #24 ENSOSIG00000014712 HRH2 (ENSOSIG00000014711) #27 kcnip1b (ENSOSIG00000014673) #28 npm1a (ENSOSIG00000014667) #29 cldn7b (ENSOSIG00000014664) #30 ENSOSIG00000014661 #31 Japanese Medaka HdrR MODERN SPECIES 5 ENSORLG00000009845 #11 SEZ6 (ENSORLG00000009861) #12 lhx1b (ENSORLG00000009889) #13 acaca (ENSORLG00000009998) #14 ENSORLG00000026949 #14 ENSORLG00000022232 #15 tbx2a (ENSORLG00000010011) #16 ppm1db (ENSORLG00000010017) #17 ENSORLG00000010043 #18 ENSORLG00000010067 #19 ENSORLG00000026763 ENSORLG00000024209 PCDH1 (ENSORLG00000010092) #20 ENSORLG00000028076 ENSORLG00000030001 #21 ENSORLG00000026884 #22 ENSORLG00000023878 #23 PCDHAC2 (ENSORLG00000010124) #24 ENSORLG00000026282 HRH2 (ENSORLG00000010128) #27 kcnip1b (ENSORLG00000010149) #28 npm1a (ENSORLG00000010179) #29 cldn7b (ENSORLG00000010194) #30 ENSORLG00000023090 #31 ENSORLG00000028085 nlgn2b (ENSORLG00000010232) #32 ENSORLG00000025447 ENSORLG00000010242 #33 kdm6bb (ENSORLG00000010264) #34 ENSORLG00000030519 #35 pcolcea (ENSORLG00000010290) #36 Ovalentaria_B ANCESTRAL SPECIES 16 ENSGT00940000156066.p #7 ENSGT00940000178903 #8 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000177991 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Pomacentridae ANCESTRAL SPECIES 10 ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000177991 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Pomacentridae_A ANCESTRAL SPECIES 3 ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000177991 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Amphiprion ANCESTRAL SPECIES 3 ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000177991 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Orange clownfish MODERN SPECIES 6 VEZF1 (ENSAPEG00000007907) #9 ENSAPEG00000007914 #10 ENSAPEG00000007938 ENSAPEG00000007947 #11 SEZ6 (ENSAPEG00000008069) #12 lhx1b (ENSAPEG00000008085) #13 acaca (ENSAPEG00000008092) #14 ENSAPEG00000008209 #14 ENSAPEG00000008227 #15 tbx2a (ENSAPEG00000008239) #16 ppm1db (ENSAPEG00000008249) #17 ENSAPEG00000008258 #18 ENSAPEG00000008293 ENSAPEG00000008386 #19 PCDH1 (ENSAPEG00000008451) #20 ENSAPEG00000008479 #22 ENSAPEG00000008487 #23 PCDHAC2 (ENSAPEG00000008491) #24 ENSAPEG00000008518 #26 HRH2 (ENSAPEG00000008522) #27 kcnip1b (ENSAPEG00000008545) #28 npm1a (ENSAPEG00000008594) #29 cldn7b (ENSAPEG00000008614) #30 FGF11 (ENSAPEG00000008651) #31 nlgn2b (ENSAPEG00000008681) #32 ENSAPEG00000008708 #33 kdm6bb (ENSAPEG00000008717) #34 pcolcea (ENSAPEG00000008760) #36 tmem88a (ENSAPEG00000008794) #35 vamp2 (ENSAPEG00000008822) #37 mpp1 (ENSAPEG00000008835) Clown anemonefish MODERN SPECIES 1279 ENSAOCG00000004878 #20 ENSAOCG00000000195 #22 ENSAOCG00000004925 #23 PCDHAC2 (ENSAOCG00000004930) #24 HRH2 (ENSAOCG00000004938) #27 kcnip1b (ENSAOCG00000004964) #28 npm1a (ENSAOCG00000004978) #29 cldn7b (ENSAOCG00000004986) #30 FGF11 (ENSAOCG00000002646) #31 nlgn2b (ENSAOCG00000005010) #32 ENSAOCG00000005015 #33 kdm6bb (ENSAOCG00000005033) #34 tmem88a (ENSAOCG00000005046) #35 pcolcea (ENSAOCG00000000207) #36 vamp2 (ENSAOCG00000005061) #37 mpp1 (ENSAOCG00000005081) TMLHE (ENSAOCG00000005094) Spiny chromis MODERN SPECIES 458 PCDH1 (ENSAPOG00000007957) #20 ENSAPOG00000007975 ENSAPOG00000007982 #22 ENSAPOG00000007987 #23 PCDHAC2 (ENSAPOG00000007994) #24 ENSAPOG00000008000 #26 HRH2 (ENSAPOG00000008020) #27 ENSAPOG00000008041 Bicolor damselfish MODERN SPECIES 507 ENSSPAG00000003709 #19 PCDH1 (ENSSPAG00000003746) #20 ENSSPAG00000003861 #22 ENSSPAG00000004639 #23 PCDHAC2 (ENSSPAG00000004650) #24 HRH2 (ENSSPAG00000004665) #27 fez1 (ENSSPAG00000004671) Cichlidae ANCESTRAL SPECIES 4 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000178903 #8 ENSGT00940000155932.b.b #9 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Pseudocrenilabrinae ANCESTRAL SPECIES 14 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000178903 #8 ENSGT00940000155932.b.b #9 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Pseudocrenilabrinae_A ANCESTRAL SPECIES 21 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000178903 #8 ENSGT00940000155932.b.b #9 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Haplochromini ANCESTRAL SPECIES 8 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000178903 #8 ENSGT00940000155932.b.b #9 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b.e #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Haplochromini_A ANCESTRAL SPECIES 6 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT00940000155768.A #11 ENSGT00940000176839.c.b.a.b.a.b ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b.e #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Haplochromini_B ANCESTRAL SPECIES 26 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT00940000155768.A #11 ENSGT00940000176839.c.b.a.b.a.b ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b.e #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Eastern happy MODERN SPECIES 1 ENSACLG00000007723 msi2a (ENSACLG00000007752) ENSACLG00000007821 KSR1 (ENSACLG00000007829) #7 VEZF1 (ENSACLG00000008062) #9 ENSACLG00000008066 #11 SEZ6 (ENSACLG00000008116) #12 lhx1b (ENSACLG00000008123) #13 acaca (ENSACLG00000008135) #14 tbx2a (ENSACLG00000008196) #16 ppm1db (ENSACLG00000008212) #17 ROBO1 (ENSACLG00000008219) #18 ROBO2 (ENSACLG00000008288) #19 ENSACLG00000008326 PCDH1 (ENSACLG00000008333) #20 ENSACLG00000008338 #22 ENSACLG00000008340 #23 PCDHAC2 (ENSACLG00000008341) #24 ENSACLG00000008343 #26 HRH2 (ENSACLG00000008345) #27 kcnip1b (ENSACLG00000008347) #28 npm1a (ENSACLG00000008376) #29 cldn7b (ENSACLG00000008390) #30 FGF11 (ENSACLG00000008398) #31 ENSACLG00000008405 ENSACLG00000008413 nlgn2b (ENSACLG00000008426) #32 ENSACLG00000008439 #33 kdm6bb (ENSACLG00000008442) #34 tmem88a (ENSACLG00000008457) #35 pcolcea (ENSACLG00000008464) #36 Zebra mbuna MODERN SPECIES 1092 CNIH2 (ENSMZEG00005013449) tm7sf2 (ENSMZEG00005013458) vps51 (ENSMZEG00005013481) frmd8 (ENSMZEG00005013504) rom1a (ENSMZEG00005013515) zfpl1 (ENSMZEG00005013521) FLRT1 (ENSMZEG00005013528) rps6ka4 (ENSMZEG00005013541) stip1 (ENSMZEG00005013574) ENSMZEG00005013586 ENSMZEG00005013597 AKAP10 (ENSMZEG00005013626) zgc:85789 (ENSMZEG00005013643) ENSMZEG00005013658 PCDH1 (ENSMZEG00005013663) #20 ENSMZEG00005013667 #22 ENSMZEG00005013674 #23 PCDHAC2 (ENSMZEG00005013682) #24 HRH2 (ENSMZEG00005013687) #27 kcnip1b (ENSMZEG00005013696) #28 npm1a (ENSMZEG00005013717) #29 cldn7b (ENSMZEG00005013733) #30 FGF11 (ENSMZEG00005013737) #31 nlgn2b (ENSMZEG00005013745) #32 ENSMZEG00005013750 #33 kdm6bb (ENSMZEG00005013759) #34 tmem88a (ENSMZEG00005013769) #35 pcolcea (ENSMZEG00005013775) #36 vamp2 (ENSMZEG00005013780) #37 mpp1 (ENSMZEG00005013784) TMLHE (ENSMZEG00005013795) P. nyererei MODERN SPECIES 375 ENSPNYG00000018349 msi2a (ENSPNYG00000018393) ENSPNYG00000018465 KSR1 (ENSPNYG00000018480) #7 VEZF1 (ENSPNYG00000018570) #9 ENSPNYG00000018584 #11 ENSPNYG00000018673 SEZ6 (ENSPNYG00000018729) #12 lhx1b (ENSPNYG00000018948) #13 acaca (ENSPNYG00000018975) #14 tbx2a (ENSPNYG00000019065) #16 ppm1db (ENSPNYG00000019091) #17 ENSPNYG00000019150 #18 ENSPNYG00000019208 #19 PCDH1 (ENSPNYG00000019237) #20 ENSPNYG00000019247 #22 ENSPNYG00000019260 #23 PCDHAC2 (ENSPNYG00000019271) #24 HRH2 (ENSPNYG00000019278) #27 kcnip1b (ENSPNYG00000019296) #28 npm1a (ENSPNYG00000019321) #29 cldn7b (ENSPNYG00000019376) #30 FGF11 (ENSPNYG00000019395) #31 nlgn2b (ENSPNYG00000019410) #32 ENSPNYG00000019431 #33 kdm6bb (ENSPNYG00000019447) #34 tmem88a (ENSPNYG00000019468) #35 pcolcea (ENSPNYG00000019477) #36 vamp2 (ENSPNYG00000019507) #37 mpp1 (ENSPNYG00000019578) Burton s mouthbrooder MODERN SPECIES 406 ENSHBUG00000022498 #22 ENSHBUG00000022492 #23 PCDHAC2 (ENSHBUG00000022477) #24 ENSHBUG00000000687 #26 HRH2 (ENSHBUG00000022462) #27 kcnip1b (ENSHBUG00000022452) #28 npm1a (ENSHBUG00000000776) #29 cldn7b (ENSHBUG00000022415) #30 FGF11 (ENSHBUG00000000917) #31 nlgn2b (ENSHBUG00000000681) #32 ENSHBUG00000022304 #33 kdm6bb (ENSHBUG00000022288) #34 tmem88a (ENSHBUG00000022259) #35 pcolcea (ENSHBUG00000022245) #36 vamp2 (ENSHBUG00000022241) #37 mpp1 (ENSHBUG00000022236) Lyretail cichlid MODERN SPECIES 354 msi2a (ENSNBRG00000014596) ENSNBRG00000014576 ENSNBRG00000014567 #7 KSR1 (ENSNBRG00000014534) #7 VEZF1 (ENSNBRG00000014527) #9 ENSNBRG00000014413 #11 SEZ6 (ENSNBRG00000014251) #12 ENSNBRG00000014225 #13 ENSNBRG00000014218 #13 acaca (ENSNBRG00000014106) #14 tbx2a (ENSNBRG00000014000) #16 ppm1db (ENSNBRG00000013923) #17 ENSNBRG00000013907 #18 ENSNBRG00000013878 #19 PCDH1 (ENSNBRG00000013845) #20 ENSNBRG00000013313 #22 PCDHAC2 (ENSNBRG00000013243) #24 HRH2 (ENSNBRG00000013209) #27 kcnip1b (ENSNBRG00000013192) #28 npm1a (ENSNBRG00000013172) #29 cldn7b (ENSNBRG00000013165) #30 FGF11 (ENSNBRG00000013151) #31 nlgn2b (ENSNBRG00000013121) #32 ENSNBRG00000013103 #33 kdm6bb (ENSNBRG00000013075) #34 tmem88a (ENSNBRG00000013062) #35 pcolcea (ENSNBRG00000013045) #36 vamp2 (ENSNBRG00000013031) #37 mpp1 (ENSNBRG00000013022) TMLHE (ENSNBRG00000013003) ENSNBRG00000012986 Nile tilapia MODERN SPECIES 1 glra4b (ENSONIG00000012879) ENSONIG00000012882 msi2a (ENSONIG00000012884) ENSONIG00000001971 KSR1 (ENSONIG00000001966) #7 VEZF1 (ENSONIG00000001964) #9 ENSONIG00000001955 #11 SEZ6 (ENSONIG00000001950) #12 lhx1b (ENSONIG00000001948) #13 acaca (ENSONIG00000001922) #14 tbx2a (ENSONIG00000001919) #16 ppm1db (ENSONIG00000001916) #17 ROBO1 (ENSONIG00000001894) #18 ROBO2 (ENSONIG00000001873) #19 PCDH1 (ENSONIG00000001872) #20 ENSONIG00000001870 #22 ENSONIG00000029439 #23 PCDHAC2 (ENSONIG00000027636) #24 ENSONIG00000028883 #26 HRH2 (ENSONIG00000001869) #27 kcnip1b (ENSONIG00000001865) #28 npm1a (ENSONIG00000001860) #29 cldn7b (ENSONIG00000001856) #30 FGF11 (ENSONIG00000001855) #31 nlgn2b (ENSONIG00000001843) #32 ENSONIG00000001842 #33 kdm6bb (ENSONIG00000001837) #34 tmem88a (ENSONIG00000001835) #35 pcolcea (ENSONIG00000001827) #36 vamp2 (ENSONIG00000007000) #37 mpp1 (ENSONIG00000033236) Midas cichlid MODERN SPECIES 1216 ppm1db (ENSACIG00000013809) #17 ROBO1 (ENSACIG00000013868) #18 ENSACIG00000014085 #19 PCDH1 (ENSACIG00000014114) #20 ENSACIG00000014127 #22 ENSACIG00000014140 #23 PCDHAC2 (ENSACIG00000014146) #24 HRH2 (ENSACIG00000014166) #27 kcnip1b (ENSACIG00000014180) #28 npm1a (ENSACIG00000014201) #29 cldn7b (ENSACIG00000014224) #30 FGF11 (ENSACIG00000014232) #31 nlgn2b (ENSACIG00000014246) #32 ENSACIG00000014265 #33 kdm6bb (ENSACIG00000014279) #34 tmem88a (ENSACIG00000014307) #35 pcolcea (ENSACIG00000014313) #36 vamp2 (ENSACIG00000014327) #37 mpp1 (ENSACIG00000014338) TMLHE (ENSACIG00000014392) Percomorphaceae_C ANCESTRAL SPECIES 10 ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000177991 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Percomorphaceae_D ANCESTRAL SPECIES 16 ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000177991 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Anabantaria ANCESTRAL SPECIES 13 ENSGT00940000166502 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Zig-zag eel MODERN SPECIES 5 ENSMAMG00000011728 ENSMAMG00000010608 ENSMAMG00000027967 ENSMAMG00000010503 ENSMAMG00000010490 ENSMAMG00000010422 #7 ENSMAMG00000010399 #9 ENSMAMG00000010318 #11 ENSMAMG00000009882 #12 lhx1b (ENSMAMG00000009864) #13 tbx2a (ENSMAMG00000009659) #16 ppm1db (ENSMAMG00000009633) #17 ENSMAMG00000009593 #18 ENSMAMG00000009453 #19 ENSMAMG00000009440 #20 ENSMAMG00000024866 #22 ENSMAMG00000009414 #24 ENSMAMG00000009407 #26 ENSMAMG00000009396 #27 ENSMAMG00000009385 ENSMAMG00000009361 #28 ENSMAMG00000009344 #29 cldn7b (ENSMAMG00000009333) #30 ENSMAMG00000009318 #31 nlgn2b (ENSMAMG00000009287) #32 ENSMAMG00000009273 #33 kdm6bb (ENSMAMG00000009257) #34 tmem88a (ENSMAMG00000009236) #35 pcolcea (ENSMAMG00000009224) #36 vamp2 (ENSMAMG00000008921) #37 ENSMAMG00000008897 Anabantoidei ANCESTRAL SPECIES 12 ENSGT00940000166502 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Siamese fighting fish MODERN SPECIES 5 ENSBSLG00000018499 ENSBSLG00000018544 ENSBSLG00000018578 msi2a (ENSBSLG00000018598) ENSBSLG00000019296 ENSBSLG00000019323 #9 ENSBSLG00000019468 #11 SEZ6 (ENSBSLG00000019848) #12 lhx1b (ENSBSLG00000020217) #13 acaca (ENSBSLG00000021616) #14 tbx2a (ENSBSLG00000025187) #16 ppm1db (ENSBSLG00000025189) #17 ENSBSLG00000025436 #18 ENSBSLG00000025638 #19 PCDH1 (ENSBSLG00000025866) #20 ENSBSLG00000025867 #22 ENSBSLG00000025868 #23 PCDHAC2 (ENSBSLG00000025869) #24 ENSBSLG00000025870 #26 ENSBSLG00000025871 #27 kcnip1b (ENSBSLG00000025873) #28 npm1a (ENSBSLG00000025948) #29 cldn7b (ENSBSLG00000025970) #30 ENSBSLG00000025980 #31 nlgn2b (ENSBSLG00000026011) #32 ENSBSLG00000026030 #33 kdm6bb (ENSBSLG00000026034) #34 tmem88a (ENSBSLG00000026044) #35 pcolcea (ENSBSLG00000026054) #36 vamp2 (ENSBSLG00000026060) #37 TMLHE (ENSBSLG00000026062) Climbing perch MODERN SPECIES 5 ENSATEG00000010578 ENSATEG00000010498 ENSATEG00000028168 ENSATEG00000010426 #7 ENSATEG00000010402 #9 ENSATEG00000010241 #11 ENSATEG00000009906 #12 lhx1b (ENSATEG00000009832) #13 acaca (ENSATEG00000009623) #14 tbx2a (ENSATEG00000009530) #16 ppm1db (ENSATEG00000009495) #17 ENSATEG00000009428 #18 ENSATEG00000009376 #19 ENSATEG00000009342 #20 ENSATEG00000027525 ENSATEG00000009080 #22 ENSATEG00000009035 #23 ENSATEG00000009029 #24 ENSATEG00000009006 #27 ENSATEG00000008898 #28 ENSATEG00000027376 #29 cldn7b (ENSATEG00000008858) #30 ENSATEG00000008836 #31 ENSATEG00000027454 #31 nlgn2b (ENSATEG00000030106) #32 ENSATEG00000008791 #33 ENSATEG00000030165 #33 kdm6bb (ENSATEG00000008705) #34 tmem88a (ENSATEG00000008691) #35 pcolcea (ENSATEG00000008687) #36 vamp2 (ENSATEG00000008672) #37 Carangaria ANCESTRAL SPECIES 16 ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000177991 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Carangaria_A ANCESTRAL SPECIES 8 ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000177991 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a.c #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 ENSGT00530000063582.a Seriola ANCESTRAL SPECIES 2 ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000177991 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a.c #13 ENSGT00940000156706.b #14 ENSGT00940000178675 #15 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 ENSGT00530000063582.a Yellowtail amberjack MODERN SPECIES 2973 ENSSLDG00000017220 KSR1 (ENSSLDG00000017241) #7 ENSSLDG00000017285 #9 ENSSLDG00000017299 #10 ENSSLDG00000017308 ENSSLDG00000017336 #11 SEZ6 (ENSSLDG00000017402) #12 lhx1b (ENSSLDG00000017427) #13 acaca (ENSSLDG00000017462) #14 ENSSLDG00000017565 #15 tbx2a (ENSSLDG00000017580) #16 ppm1db (ENSSLDG00000017589) #17 ROBO1 (ENSSLDG00000017612) #18 ENSSLDG00000017699 #19 PCDH1 (ENSSLDG00000017748) #20 ENSSLDG00000017759 #22 ENSSLDG00000017772 #23 PCDHAC2 (ENSSLDG00000017781) #24 HRH2 (ENSSLDG00000017793) #27 kcnip1b (ENSSLDG00000017813) #28 npm1a (ENSSLDG00000017849) #29 cldn7b (ENSSLDG00000017874) #30 ENSSLDG00000017891 #31 nlgn2b (ENSSLDG00000017919) #32 ENSSLDG00000017950 #33 kdm6bb (ENSSLDG00000017966) #34 tmem88a (ENSSLDG00000018025) #35 pcolcea (ENSSLDG00000018038) #36 vamp2 (ENSSLDG00000018051) #37 mpp1 (ENSSLDG00000018059) TMLHE (ENSSLDG00000018087) Greater amberjack MODERN SPECIES 39 msi2a (ENSSDUG00000014507) ENSSDUG00000014633 KSR1 (ENSSDUG00000014649) #7 VEZF1 (ENSSDUG00000014706) #9 ENSSDUG00000014715 #10 ENSSDUG00000014731 #11 SEZ6 (ENSSDUG00000014823) #12 lhx1b (ENSSDUG00000015049) #13 acaca (ENSSDUG00000015072) #14 tbx2a (ENSSDUG00000015169) #16 ppm1db (ENSSDUG00000015198) #17 ENSSDUG00000015309 #18 ENSSDUG00000015322 ENSSDUG00000015333 #19 PCDH1 (ENSSDUG00000015358) #20 ENSSDUG00000015390 #22 ENSSDUG00000015563 #23 PCDHAC2 (ENSSDUG00000015572) #24 HRH2 (ENSSDUG00000015582) #27 kcnip1b (ENSSDUG00000015591) #28 npm1a (ENSSDUG00000015609) #29 cldn7b (ENSSDUG00000015623) #30 FGF11 (ENSSDUG00000015630) #31 nlgn2b (ENSSDUG00000015644) #32 ENSSDUG00000015656 #33 kdm6bb (ENSSDUG00000015668) #34 tmem88a (ENSSDUG00000015683) #35 pcolcea (ENSSDUG00000015694) #36 ENSSDUG00000015706 vamp2 (ENSSDUG00000015716) #37 mpp1 (ENSSDUG00000015726) Barramundi perch MODERN SPECIES 94 ENSLCAG00010022181 msi2a (ENSLCAG00010022089) OMG (ENSLCAG00010022051) KSR1 (ENSLCAG00010022025) #7 VEZF1 (ENSLCAG00010021999) #9 ENSLCAG00010021997 #10 ENSLCAG00010021758 #11 SEZ6 (ENSLCAG00010021648) #12 lhx1b (ENSLCAG00010021635) #13 acaca (ENSLCAG00010021522) #14 tbx2a (ENSLCAG00010021471) #16 ppm1db (ENSLCAG00010021470) #17 ENSLCAG00010021369 #18 ROBO2 (ENSLCAG00010021147) #19 PCDH1 (ENSLCAG00010021078) #20 ENSLCAG00010021077 #22 ENSLCAG00010021076 #23 PCDHAC2 (ENSLCAG00010021073) #24 HRH2 (ENSLCAG00010021072) #27 kcnip1b (ENSLCAG00010021065) #28 npm1a (ENSLCAG00010021047) #29 cldn7b (ENSLCAG00010021036) #30 ENSLCAG00010021033 #31 nlgn2b (ENSLCAG00010021003) #32 ENSLCAG00010020993 #33 kdm6bb (ENSLCAG00010020985) #34 tmem88a (ENSLCAG00010020982) #35 pcolcea (ENSLCAG00010020976) #36 vamp2 (ENSLCAG00010020964) #37 mpp1 (ENSLCAG00010020925) TMLHE (ENSLCAG00010020912) Pleuronectoidei ANCESTRAL SPECIES 27 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000183362 #21 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Turbot MODERN SPECIES 16 ENSSMAG00000018484 ENSSMAG00000033378 ENSSMAG00000018550 #7 ENSSMAG00000021630 #9 ENSSMAG00000018648 #10 ENSSMAG00000018653 #11 ENSSMAG00000018683 ENSSMAG00000018687 #12 lhx1b (ENSSMAG00000018705) #13 acaca (ENSSMAG00000018733) #14 tbx2a (ENSSMAG00000018798) #16 ppm1db (ENSSMAG00000018804) #17 ENSSMAG00000018817 #18 ENSSMAG00000018887 #19 ENSSMAG00000018935 #20 ENSSMAG00000018975 #22 ENSSMAG00000018984 ENSSMAG00000018993 #24 ENSSMAG00000018999 #26 ENSSMAG00000019007 #27 ENSSMAG00000019010 #28 ENSSMAG00000019090 #29 cldn7b (ENSSMAG00000019124) #30 ENSSMAG00000019125 #31 nlgn2b (ENSSMAG00000019144) #32 ENSSMAG00000019203 #33 kdm6bb (ENSSMAG00000019216) #34 tmem88a (ENSSMAG00000019282) #35 pcolcea (ENSSMAG00000019284) #36 vamp2 (ENSSMAG00000033547) #37 ENSSMAG00000019304 Tongue sole MODERN SPECIES 10 irf1 (ENSCSEG00000011923) slc22a4 (ENSCSEG00000011904) ENSCSEG00000011898 ENSCSEG00000011822 slc22a21 (ENSCSEG00000011683) ENSCSEG00000011645 #11 ENSCSEG00000011612 #12 lhx1b (ENSCSEG00000011601) #13 acaca (ENSCSEG00000011442) #14 ENSCSEG00000011423 #16 ppm1db (ENSCSEG00000011407) #17 ROBO1 (ENSCSEG00000011320) #18 ROBO2 (ENSCSEG00000011288) #19 PCDH1 (ENSCSEG00000011244) #20 ENSCSEG00000011211 #21 ENSCSEG00000011203 #22 ENSCSEG00000011200 #23 PCDHAC2 (ENSCSEG00000011194) #24 HRH2 (ENSCSEG00000011190) #27 npm1a (ENSCSEG00000011165) #29 cldn7b (ENSCSEG00000011159) #30 ENSCSEG00000011150 #31 nlgn2b (ENSCSEG00000011119) #32 kdm6bb (ENSCSEG00000011085) #34 ENSCSEG00000011072 tmem88a (ENSCSEG00000011069) #35 pcolcea (ENSCSEG00000011063) #36 vamp2 (ENSCSEG00000011053) #37 mpp1 (ENSCSEG00000011026) TMLHE (ENSCSEG00000011005) ENSCSEG00000010984 Eupercaria ANCESTRAL SPECIES 17 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Tetraodontidae ANCESTRAL SPECIES 6 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Fugu MODERN SPECIES 6 msi2a (ENSTRUG00000021248) OMG (ENSTRUG00000023075) KSR1 (ENSTRUG00000011530) #7 VEZF1 (ENSTRUG00000011480) #9 ENSTRUG00000025896 #10 ENSTRUG00000010843 #11 ENSTRUG00000010496 #12 lhx1b (ENSTRUG00000010398) #13 acaca (ENSTRUG00000010043) #14 tbx2a (ENSTRUG00000009981) #16 ppm1db (ENSTRUG00000009943) #17 ENSTRUG00000031147 #18 ROBO2 (ENSTRUG00000027553) #19 ENSTRUG00000022748 PCDH1 (ENSTRUG00000008240) #20 ENSTRUG00000007848 #22 ENSTRUG00000031769 #23 PCDHAC2 (ENSTRUG00000019863) #24 ENSTRUG00000027523 #26 HRH2 (ENSTRUG00000007773) #27 kcnip1b (ENSTRUG00000007648) #28 npm1a (ENSTRUG00000024003) #29 cldn7b (ENSTRUG00000022766) #30 FGF11 (ENSTRUG00000007364) #31 ENSTRUG00000025551 nlgn2a (ENSTRUG00000007038) #32 ENSTRUG00000024116 #33 kdm6bb (ENSTRUG00000022289) #34 tmem88a (ENSTRUG00000020844) #35 pcolcea (ENSTRUG00000006387) #36 mpp1 (ENSTRUG00000006002) Eupecaria_A ANCESTRAL SPECIES 17 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Ballan wrasse MODERN SPECIES 30 ENSLBEG00000006983 msi2a (ENSLBEG00000007061) ENSLBEG00000007147 KSR1 (ENSLBEG00000007192) #7 ENSLBEG00000007320 #9 ENSLBEG00000007352 #11 ENSLBEG00000007485 #12 lhx1b (ENSLBEG00000007536) #13 acaca (ENSLBEG00000007593) #14 tbx2a (ENSLBEG00000007793) #16 ppm1db (ENSLBEG00000008035) #17 ROBO1 (ENSLBEG00000008067) #18 ENSLBEG00000008142 #19 ENSLBEG00000008201 PCDH1 (ENSLBEG00000008214) #20 ENSLBEG00000008332 #22 ENSLBEG00000008665 #23 PCDHAC2 (ENSLBEG00000008679) #24 HRH2 (ENSLBEG00000008690) #27 kcnip1b (ENSLBEG00000008764) #28 npm1a (ENSLBEG00000008793) #29 ENSLBEG00000008814 FGF11 (ENSLBEG00000008825) #31 ENSLBEG00000008856 #32 Eupecaria_B ANCESTRAL SPECIES 17 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Perciformes ANCESTRAL SPECIES 25 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 ENSGT00530000063582.a Cottioidei ANCESTRAL SPECIES 10 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000166502 ENSGT00940000156455 ENSGT00940000159451 ENSGT01050000244864.B.a.g.a.a.a ENSGT01030000235048 Lumpfish MODERN SPECIES 5 ENSCLMG00005023113 msi2a (ENSCLMG00005023110) ENSCLMG00005023108 KSR1 (ENSCLMG00005023107) #7 VEZF1 (ENSCLMG00005023104) #9 ENSCLMG00005023103 #10 ENSCLMG00005023101 #11 SEZ6 (ENSCLMG00005023100) #12 lhx1b (ENSCLMG00005023099) #13 acaca (ENSCLMG00005020773) #14 tbx2a (ENSCLMG00005020546) #16 ENSCLMG00005020545 #17 ENSCLMG00005020544 #18 ENSCLMG00005020542 #19 PCDH1 (ENSCLMG00005020539) #20 ENSCLMG00005020537 #22 ENSCLMG00005020536 #25 HRH2 (ENSCLMG00005020535) #27 kcnip1b (ENSCLMG00005020533) #28 npm1a (ENSCLMG00005020532) #29 ENSCLMG00005020531 FGF11 (ENSCLMG00005020530) #31 nlgn2b (ENSCLMG00005020529) #32 ENSCLMG00005020528 #33 ENSCLMG00005020527 #34 glra4b (ENSCLMG00005020526) aifm1 (ENSCLMG00005019575) tbc1d8b (ENSCLMG00005019549) gja2 (ENSCLMG00005019548) ENSCLMG00005019547 gjb1a (ENSCLMG00005019546) Stickleback MODERN SPECIES 7 tmem88a (ENSGACG00000020299) #35 ENSGACG00000020300 msi2a (ENSGACG00000020301) MSI2 (ENSGACG00000020302) KSR1 (ENSGACG00000020303) #7 VEZF1 (ENSGACG00000020304) #9 ENSGACG00000020305 #11 SEZ6 (ENSGACG00000020306) #12 lhx1b (ENSGACG00000020307) #13 acaca (ENSGACG00000020308) #14 tbx2a (ENSGACG00000020309) #16 ppm1db (ENSGACG00000020310) #17 ROBO1 (ENSGACG00000020311) #18 ROBO2 (ENSGACG00000020312) #19 PCDH1 (ENSGACG00000020313) #20 ENSGACG00000020314 #22 PCDHAC2 (ENSGACG00000020315) #24 ENSGACG00000020316 #26 HRH2 (ENSGACG00000020317) #27 kcnip1b (ENSGACG00000020318) #28 npm1a (ENSGACG00000020319) #29 cldn7b (ENSGACG00000020320) #30 ENSGACG00000020321 #31 nlgn2b (ENSGACG00000020322) #32 ENSGACG00000020323 #33 ENSGACG00000020324 KDM6B (ENSGACG00000020325) #34 glra4b (ENSGACG00000020326) aifm1 (ENSGACG00000020327) tbc1d8b (ENSGACG00000020328) gja2 (ENSGACG00000020329) Perciformes_a ANCESTRAL SPECIES 34 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 ENSGT00530000063582.a Pike perch DUPLICATION Pike perch MODERN SPECIES 37 msi2a (ENSSLUG00000021428) ENSSLUG00000021406 KSR1 (ENSSLUG00000021397) #7 VEZF1 (ENSSLUG00000021389) #9 ENSSLUG00000021387 #10 ENSSLUG00000015853 #11 SEZ6 (ENSSLUG00000014103) #12 lhx1b (ENSSLUG00000014024) #13 acaca (ENSSLUG00000006714) #14 tbx2a (ENSSLUG00000006180) #16 ppm1db (ENSSLUG00000006171) #17 ENSSLUG00000006166 ROBO1 (ENSSLUG00000006087) #18 ROBO2 (ENSSLUG00000006052) #19 PCDH1 (ENSSLUG00000005983) #20 ENSSLUG00000005967 #22 ENSSLUG00000005964 ENSSLUG00000005958 #22 PCDHAC2 (ENSSLUG00000005950) #24 HRH2 (ENSSLUG00000005947) #27 kcnip1b (ENSSLUG00000005923) #28 npm1a (ENSSLUG00000005907) #29 cldn7b (ENSSLUG00000005892) #30 FGF11 (ENSSLUG00000005866) #31 nlgn2b (ENSSLUG00000005721) #32 ENSSLUG00000005695 #33 kdm6bb (ENSSLUG00000005672) #34 tmem88a (ENSSLUG00000005664) #35 pcolcea (ENSSLUG00000005533) #36 vamp2 (ENSSLUG00000005499) #37 mpp1 (ENSSLUG00000005351) Pike perch MODERN SPECIES 37 KSR1 (ENSSLUG00000021397) #7 VEZF1 (ENSSLUG00000021389) #9 ENSSLUG00000021387 #10 ENSSLUG00000015853 #11 SEZ6 (ENSSLUG00000014103) #12 lhx1b (ENSSLUG00000014024) #13 acaca (ENSSLUG00000006714) #14 tbx2a (ENSSLUG00000006180) #16 ppm1db (ENSSLUG00000006171) #17 ENSSLUG00000006166 ROBO1 (ENSSLUG00000006087) #18 ROBO2 (ENSSLUG00000006052) #19 PCDH1 (ENSSLUG00000005983) #20 ENSSLUG00000005967 #22 ENSSLUG00000005964 ENSSLUG00000005958 #22 PCDHAC2 (ENSSLUG00000005950) #24 HRH2 (ENSSLUG00000005947) #27 kcnip1b (ENSSLUG00000005923) #28 npm1a (ENSSLUG00000005907) #29 cldn7b (ENSSLUG00000005892) #30 FGF11 (ENSSLUG00000005866) #31 nlgn2b (ENSSLUG00000005721) #32 ENSSLUG00000005695 #33 kdm6bb (ENSSLUG00000005672) #34 tmem88a (ENSSLUG00000005664) #35 pcolcea (ENSSLUG00000005533) #36 vamp2 (ENSSLUG00000005499) #37 mpp1 (ENSSLUG00000005351) Eupecaria_C ANCESTRAL SPECIES 15 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 Gilthead seabream MODERN SPECIES 4 ENSSAUG00010011601 msi2a (ENSSAUG00010011567) ENSSAUG00010011563 KSR1 (ENSSAUG00010011088) #7 VEZF1 (ENSSAUG00010011083) #9 ENSSAUG00010011081 ##10 ENSSAUG00010009559 #11 SEZ6 (ENSSAUG00010009150) #12 lhx1b (ENSSAUG00010009136) #13 acaca (ENSSAUG00010006091) #14 tbx2a (ENSSAUG00010005995) #16 ppm1db (ENSSAUG00010005994) #17 ENSSAUG00010005660 #18 ROBO2 (ENSSAUG00010002766) #19 PCDH1 (ENSSAUG00010002681) #20 ENSSAUG00010002675 #22 ENSSAUG00010002670 #23 PCDHAC2 (ENSSAUG00010002660) #24 ENSSAUG00010002653 #26 HRH2 (ENSSAUG00010002644) #27 kcnip1b (ENSSAUG00010002585) #28 npm1a (ENSSAUG00010002570) #29 cldn7b (ENSSAUG00010002567) #30 ENSSAUG00010002562 #31 nlgn2b (ENSSAUG00010002448) #32 ENSSAUG00010002444 #33 kdm6bb (ENSSAUG00010002416) #34 tmem88a (ENSSAUG00010002395) #35 pcolcea (ENSSAUG00010002390) #36 vamp2 (ENSSAUG00010002387) #37 mpp1 (ENSSAUG00010002192) Eupercaria_incertae_sedis ANCESTRAL SPECIES 12 ENSGT00940000166439 ENSGT00940000155420.a.b ENSGT00940000160802.b ENSGT00940000156066.p #7 ENSGT00940000155932.b.b #9 ENSGT01090000260005.a.a.b.a.b #10 ENSGT00940000155768.A #11 ENSGT00940000156995.b #12 ENSGT00940000164085.d.a #13 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 ENSGT01030000234592.A.b.b.a.b.a.b #33 ENSGT00940000160414.d #34 ENSGT00940000163776.a.b #35 ENSGT00940000159264.e #36 ENSGT00940000164382.a #37 ENSGT00940000158744 European seabass MODERN SPECIES 4 ENSDLAG00005022002 ENSDLAG00005021910 ENSDLAG00005021900 ENSDLAG00005021494 #7 ENSDLAG00005021447 #9 ENSDLAG00005021441 #10 ENSDLAG00005019489 #11 ENSDLAG00005019086 #12 lhx1b (ENSDLAG00005019048) #13 acaca (ENSDLAG00005007628) #14 tbx2a (ENSDLAG00005007123) #16 ppm1db (ENSDLAG00005007115) #17 ENSDLAG00005006594 #18 ENSDLAG00005004407 #19 ENSDLAG00005004176 #20 ENSDLAG00005023047 #22 ENSDLAG00005023043 #23 ENSDLAG00005023039 #24 ENSDLAG00005023028 #26 ENSDLAG00005023027 #27 ENSDLAG00005023019 #28 ENSDLAG00005023017 #29 cldn7b (ENSDLAG00005023015) #30 ENSDLAG00005029193 #31 ENSDLAG00005028738 nlgn2b (ENSDLAG00005022969) #32 ENSDLAG00005022957 #33 kdm6bb (ENSDLAG00005022934) #34 tmem88a (ENSDLAG00005022931) #35 pcolcea (ENSDLAG00005022926) #36 vamp2 (ENSDLAG00005033206) #37 Large yellow croaker MODERN SPECIES 493 ENSLCRG00005023384 msi2a (ENSLCRG00005023379) ENSLCRG00005023375 KSR1 (ENSLCRG00005023356) #7 VEZF1 (ENSLCRG00005023353) #9 ENSLCRG00005023352 #10 ENSLCRG00005023324 #11 SEZ6 (ENSLCRG00005023316) #12 lhx1b (ENSLCRG00005023312) #13 acaca (ENSLCRG00005021121) #14 tbx2a (ENSLCRG00005021051) #16 ppm1db (ENSLCRG00005021049) #17 ROBO1 (ENSLCRG00005021034) #18 ROBO2 (ENSLCRG00005020848) #19 PCDH1 (ENSLCRG00005020838) #20 ENSLCRG00005020837 #22 ENSLCRG00005020836 #23 PCDHAC2 (ENSLCRG00005020835) #24 ENSLCRG00005020834 #26 HRH2 (ENSLCRG00005020833) #27 kcnip1b (ENSLCRG00005020832) #28 npm1a (ENSLCRG00005020831) #29 cldn7b (ENSLCRG00005020830) #30 FGF11 (ENSLCRG00005020829) #31 nlgn2b (ENSLCRG00005020797) #32 ENSLCRG00005020791 #33 kdm6bb (ENSLCRG00005020788) #34 tmem88a (ENSLCRG00005020787) #35 pcolcea (ENSLCRG00005020784) #36 vamp2 (ENSLCRG00005020783) #37 mpp1 (ENSLCRG00005020596) Tiger tail seahorse MODERN SPECIES 508 msi2a (ENSHCOG00000000266) ENSHCOG00000008096 KSR1 (ENSHCOG00000008071) #7 VEZF1 (ENSHCOG00000008038) #9 ENSHCOG00000008029 #11 SEZ6 (ENSHCOG00000007956) #12 lhx1b (ENSHCOG00000007765) #13 acaca (ENSHCOG00000007751) #14 tbx2a (ENSHCOG00000007677) #16 ppm1db (ENSHCOG00000007662) #17 ENSHCOG00000007636 #18 ENSHCOG00000007617 #18 ENSHCOG00000007603 #19 PCDH1 (ENSHCOG00000007574) #20 ENSHCOG00000007525 #22 PCDHAC2 (ENSHCOG00000007370) #24 HRH2 (ENSHCOG00000007343) #27 Pinecone sodierfish MODERN SPECIES 5 OMG (ENSMMDG00005012379) ENSMMDG00005012380 KSR1 (ENSMMDG00005012385) #7 ENSMMDG00005012389 #9 ENSMMDG00005012395 #10 ENSMMDG00005012407 #11 ENSMMDG00005012909 SEZ6 (ENSMMDG00005012913) #12 lhx1b (ENSMMDG00005012916) #13 acaca (ENSMMDG00005013418) #14 tbx2a (ENSMMDG00005024501) #16 ppm1db (ENSMMDG00005024503) #17 ENSMMDG00005024505 #18 ENSMMDG00005024506 #19 PCDH1 (ENSMMDG00005024511) #20 ENSMMDG00005024515 #22 ENSMMDG00005024518 #25 HRH2 (ENSMMDG00005024520) #27 kcnip1b (ENSMMDG00005024521) #28 npm1a (ENSMMDG00005024522) #29 tlx3b (ENSMMDG00005024525) ENSMMDG00005024527 ENSMMDG00005024529 #31 nlgn2b (ENSMMDG00005024532) #32 ENSMMDG00005024562 #33 kdm6bb (ENSMMDG00005024564) #34 tmem88a (ENSMMDG00005024567) #35 pcolcea (ENSMMDG00005024568) #36 vamp2 (ENSMMDG00005024570) #37 mpp1 (ENSMMDG00005024577) TMLHE (ENSMMDG00005024589) Cod MODERN SPECIES 20 ENSGMOG00000003685 ENSGMOG00000032622 ENSGMOG00000028779 ENSGMOG00000023939 ENSGMOG00000008917 #7 ENSGMOG00000008935 #9 ENSGMOG00000018558 ##11 ENSGMOG00000002487 #12 lhx1b (ENSGMOG00000037165) #13 acaca (ENSGMOG00000001741) #14 ENSGMOG00000026495 ENSGMOG00000034205 ppm1db (ENSGMOG00000010402) #17 ENSGMOG00000029364 ENSGMOG00000019252 #20 ENSGMOG00000025351 #22 ENSGMOG00000037222 #23 ENSGMOG00000022929 ENSGMOG00000000691 #24 ENSGMOG00000029624 ENSGMOG00000033924 #25 ENSGMOG00000029025 #26 ENSGMOG00000035864 #27 kcnip1b (ENSGMOG00000025934) #28 ENSGMOG00000023207 #29 tlx3b (ENSGMOG00000036799) ENSGMOG00000031803 ENSGMOG00000030845 #33 kdm6bb (ENSGMOG00000004719) #34 ENSGMOG00000036930 #35 pcolcea (ENSGMOG00000016080) #36 Protacanthopterygii ANCESTRAL SPECIES 11 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00390000018761 ENSGT00940000164085.d.a #13 ENSGT00390000000288 ENSGT00940000156706.b #14 ENSGT00940000158439.n #16 ENSGT00940000155672.h #17 ENSGT00390000010722.f ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT00940000155521.a.b #20 ENSGT00950000185626 ENSGT01060000248588.a.c.a.b ENSGT00390000009004.c ENSGT00940000163777.b.a.b #22 ENSGT00940000164173.b.a.c.b ENSGT00990000210446 ENSGT00950000183116.b.a.a.b.a.a.b ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000165390.b.c.a ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160629.a ENSGT00940000166282.B ENSGT00940000163701.b.a.a.a.b ENSGT00940000163701.b.a.b ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT01030000234592.A.b.b.a.b.a.a.b ##33 Northern pike MODERN SPECIES 6 aatf (ENSELUG00000012429) acaca (ENSELUG00000012499) #14 tbx2a (ENSELUG00000012529) #16 appbp2 (ENSELUG00000012570) ENSELUG00000012672 ENSELUG00000012721 APBB1 (ENSELUG00000012762) ROBO1 (ENSELUG00000012930) #18 ENSELUG00000013007 #19 PCDH1 (ENSELUG00000013039) #20 ENSELUG00000013073 trpc7a (ENSELUG00000013118) etf1b (ENSELUG00000013149) FBXW11 (ENSELUG00000013168) fgf18b (ENSELUG00000013189) ENSELUG00000013208 #22 ENSELUG00000013213 #23 PCDHAC2 (ENSELUG00000013352) #24 ENSELUG00000031883 ENSELUG00000013511 ENSELUG00000033196 ENSELUG00000029787 ENSELUG00000032793 ENSELUG00000013396 ENSELUG00000017906 pcdh2g13 (ENSELUG00000016731) ENSELUG00000013431 ENSELUG00000013559 ENSELUG00000013567 #26 HRH2 (ENSELUG00000013591) #27 ENSELUG00000013643 Salmoninae ANCESTRAL SPECIES 169 ENSGT00940000155521.a.b.g #20 ENSGT00950000185626.b ENSGT01060000248588.a.c.a.b.e ENSGT00390000009004.c.e ENSGT00940000155898.u.a ENSGT00940000159553.a.c ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a.c #23 ENSGT00940000160554.a.c #24 ENSGT00970000198378 #25 ENSGT00990000210446 ENSGT00390000017848.a #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d.f #28 ENSGT00940000166176.g #29 ENSGT00940000160629.a.a ENSGT00940000163701.b.a.b ENSGT00940000166258.c.b ENSGT00940000158058.b.g.a #31 ENSGT00940000166430.ab.a #32 ENSGT00990000209329 ENSGT01030000234592.A.b.b.a.b.b.b.e ##33 Huchen MODERN SPECIES 4232 trpc7a (ENSHHUG00000043937) etf1b (ENSHHUG00000043896) FBXW11 (ENSHHUG00000043624) fgf18b (ENSHHUG00000043618) ENSHHUG00000043616 #22 ENSHHUG00000043611 #23 Salmoninae_a ANCESTRAL SPECIES 4 ENSGT00940000158439.n.c #16 ENSGT00940000155672.h #17 ENSGT00390000010722.f.a ENSGT00940000155797.f.b.a ENSGT00940000166715.d ENSGT00390000000002.a.b.i.b ENSGT00940000154477.jc.b.k.a #18 ENSGT00940000156324.f.b.a #19 ENSGT01050000244823.d.a.a.b ENSGT00940000155521.a.b.g #20 ENSGT00950000185626.b ENSGT01060000248588.a.c.a.b.e ENSGT00390000009004.c.e ENSGT00940000155898.u.a ENSGT00940000159553.a.c ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a.c #23 ENSGT00940000164173.b.a.c.b ENSGT00940000160554.a.c #24 ENSGT00970000198378 #25 ENSGT00990000210446 ENSGT00390000017848.a #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d.f #28 ENSGT00940000166176.g #29 ENSGT00940000160629.a.a ENSGT00940000163701.b.a.b ENSGT00940000166258.c.b ENSGT00940000158058.b.g.a.a #31 ENSGT00940000166430.ab.a #32 ENSGT00990000209329 Salmo ANCESTRAL SPECIES 18 ENSGT00940000158439.n.c #16 ENSGT00940000155672.h #17 ENSGT00390000010722.f.a ENSGT00940000155797.f.b.a ENSGT00940000166715.d ENSGT00390000000002.a.b.i.b ENSGT00940000154477.jc.b.k.a #18 ENSGT00940000156324.f.b.a #19 ENSGT01050000244823.d.a.a.b ENSGT00940000155521.a.b.g #20 ENSGT00950000185626.b ENSGT01060000248588.a.c.a.b.e ENSGT00390000009004.c.e ENSGT00940000155898.u.a ENSGT00940000159553.a.c ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a.c #23 ENSGT00940000164173.b.a.c.b ENSGT00940000160554.a.c #24 ENSGT00940000166432.d.i.b.c.a.a.b.a ENSGT00990000210446 ENSGT00940000164983.c.a.b.a.b.a.a ENSGT00390000017848.a #26 ENSGT00940000158761.b.a #27 ENSGT00940000158048.d.f #28 ENSGT00940000166176.g #29 ENSGT00940000160629.a.a ENSGT00940000163701.b.a.b ENSGT00940000166258.c.b ENSGT00940000158058.b.g.a.a #31 ENSGT00940000166430.ab.a #32 River trout MODERN SPECIES 10 appbp2 (ENSSTUG00000014767) ENSSTUG00000014852 ENSSTUG00000016012 APBB1 (ENSSTUG00000016036) ROBO1 (ENSSTUG00000016215) #18 ROBO2 (ENSSTUG00000017903) #19 ENSSTUG00000018171 taar19p (ENSSTUG00000018175) PCDH1 (ENSSTUG00000018183) #20 ENSSTUG00000018196 ENSSTUG00000018205 trpc7a (ENSSTUG00000018221) etf1b (ENSSTUG00000018406) FBXW11 (ENSSTUG00000018451) fgf18b (ENSSTUG00000019391) ENSSTUG00000019401 #22 ENSSTUG00000019410 #23 ENSSTUG00000019430 PCDHAC2 (ENSSTUG00000019447) #24 ENSSTUG00000019466 ENSSTUG00000019527 ENSSTUG00000019550 ENSSTUG00000019555 ENSSTUG00000019560 ENSSTUG00000019563 ENSSTUG00000019575 #26 HRH2 (ENSSTUG00000019579) #27 kcnip1b (ENSSTUG00000019589) #28 npm1a (ENSSTUG00000019630) #29 tlx3b (ENSSTUG00000019662) ponzr2 (ENSSTUG00000019666) Atlantic salmon MODERN SPECIES 23 tbx2a (ENSSSAG00000091148) #16 ppm1db (ENSSSAG00000043771) #17 APPBP2 (ENSSSAG00000072514) ENSSSAG00000012390 ENSSSAG00000072840 ENSSSAG00000010446 ENSSSAG00000010401 ENSSSAG00000010230 #18 ENSSSAG00000104416 ENSSSAG00000009720 #19 ENSSSAG00000009676 ENSSSAG00000009668 #20 trpc7a (ENSSSAG00000006305) etf1b (ENSSSAG00000005920) fgf18b (ENSSSAG00000094579) ENSSSAG00000005898 #22 ENSSSAG00000088252 #23 ENSSSAG00000005885 #24 ENSSSAG00000118785 ENSSSAG00000033585 ENSSSAG00000114564 ENSSSAG00000035693 ENSSSAG00000116986 ENSSSAG00000083324 ENSSSAG00000085930 ENSSSAG00000005817 ENSSSAG00000005793 ENSSSAG00000109342 ENSSSAG00000077223 ENSSSAG00000005733 #26 ENSSSAG00000005729 #27 Oncorhynchus ANCESTRAL SPECIES 4 ENSGT00940000158439.n.c #16 ENSGT00940000155672.h #17 ENSGT00390000010722.f.a ENSGT00940000155797.f.b.a ENSGT00940000166715.d ENSGT00390000000002.a.b.i.b ENSGT00940000154477.jc.b.k.a #18 ENSGT00940000156324.f.b.a #19 ENSGT01050000244823.d.a.a.b ENSGT00940000155521.a.b.g #20 ENSGT00950000185626.b ENSGT01060000248588.a.c.a.b.e ENSGT00390000009004.c.e ENSGT00940000155898.u.a ENSGT00940000159553.a.c ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a.c #23 ENSGT00940000164173.b.a.c.b ENSGT00940000160554.a.c #24 ENSGT00970000198378 #25 ENSGT00990000210446 ENSGT00940000164983.c.a.b.a.a ENSGT00390000017848.a #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d.f #28 ENSGT00940000166176.g #29 ENSGT00940000160629.a.a ENSGT00940000163701.b.a.b ENSGT00940000166258.c.b ENSGT00940000158058.b.g.a.a #31 ENSGT00940000166430.ab.a #32 Oncorhynchus_a ANCESTRAL SPECIES 2 ENSGT00940000158439.n.c #16 ENSGT00940000155672.h #17 ENSGT00390000010722.f.a ENSGT00940000155797.f.b.a ENSGT00940000166715.d ENSGT00390000000002.a.b.i.b ENSGT00940000154477.jc.b.k.a #18 ENSGT00940000156324.f.b.a #19 ENSGT01050000244823.d.a.a.b ENSGT00940000155521.a.b.g #20 ENSGT00950000185626.b ENSGT01060000248588.a.c.a.b.e ENSGT00390000009004.c.e ENSGT00940000155898.u.a ENSGT00940000159553.a.c ENSGT00940000163777.b.a.b #22 ENSGT00940000164173.b.a.c.b ENSGT00940000160554.a.c #24 ENSGT00970000198378 #25 ENSGT00990000210446 ENSGT00940000164983.c.a.b.a.a ENSGT00390000017848.a #26 ENSGT00940000158761.b #27 ENSGT00940000158048.d.f #28 ENSGT00940000166176.g #29 ENSGT00940000160629.a.a ENSGT00940000163701.b.a.b ENSGT00940000166258.c.b ENSGT00940000158058.b.g.a.a #31 ENSGT00940000166430.ab.a #32 ENSGT00990000209329 Chinook salmon MODERN SPECIES 23 ppm1db (ENSOTSG00005027039) #17 appbp2 (ENSOTSG00005027100) ENSOTSG00005027111 ENSOTSG00005027699 APBB1 (ENSOTSG00005027702) ENSOTSG00005027703 ROBO1 (ENSOTSG00005027704) #18 ROBO2 (ENSOTSG00005027726) #19 ENSOTSG00005027728 PCDH1 (ENSOTSG00005027729) #20 ENSOTSG00005027730 trpc7a (ENSOTSG00005027741) etf1b (ENSOTSG00005028770) FBXW11 (ENSOTSG00005028781) fgf18b (ENSOTSG00005030549) ENSOTSG00005030550 #22 PCDHAC2 (ENSOTSG00005030551) #24 kdm6bb (ENSOTSG00005030552) #34 tmem88a (ENSOTSG00005030553) #35 pcolcea (ENSOTSG00005030554) #36 per1a (ENSOTSG00005030555) VAMP2 (ENSOTSG00005030653) and3 (ENSOTSG00005030656) TMLHE (ENSOTSG00005030660) dkc1 (ENSOTSG00005030665) mpp1 (ENSOTSG00005030678) ENSOTSG00005031413 ENSOTSG00005031414 ENSOTSG00005031415 GABRA3 (ENSOTSG00005031417) ENSOTSG00005031419 Coho salmon MODERN SPECIES 20 tbx2a (ENSOKIG00005038400) #16 ppm1db (ENSOKIG00005038390) #17 APPBP2 (ENSOKIG00005038371) ENSOKIG00005037291 ENSOKIG00005037132 APBB1 (ENSOKIG00005037031) ENSOKIG00005036993 ROBO1 (ENSOKIG00005036219) #18 ROBO2 (ENSOKIG00005035691) #19 ENSOKIG00005035619 PCDH1 (ENSOKIG00005035600) #20 trpc7a (ENSOKIG00005034328) etf1b (ENSOKIG00005034172) FBXW11 (ENSOKIG00005033774) fgf18b (ENSOKIG00005033724) ENSOKIG00005033708 #22 ENSOKIG00005033618 PCDHAC2 (ENSOKIG00005033608) #24 ENSOKIG00005033590 #25 ENSOKIG00005033575 ENSOKIG00005033546 ENSOKIG00005033450 ##22 ENSOKIG00005033392 ENSOKIG00005033368 #26 HRH2 (ENSOKIG00005033357) #27 kcnip1b (ENSOKIG00005033318) #28 npm1a (ENSOKIG00005033282) #29 tlx3b (ENSOKIG00005033267) ponzr2 (ENSOKIG00005033246) ENSOKIG00005033235 FGF11 (ENSOKIG00005033201) #31 Otomorpha ANCESTRAL SPECIES 70 ENSGT00940000154169.A.g ENSGT00940000155797 ENSGT00940000166715 ENSGT00940000156324.f.b #19 ENSGT00940000154477.jc.b #18 ENSGT00940000155521.a.b #20 ENSGT00940000174500 ENSGT00950000185626 ENSGT01060000248588.a.c.a.b ENSGT00390000009004.c ENSGT00940000155898.q ENSGT00940000159553.a ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00940000166432.c.b.b.a ENSGT00990000204690 ENSGT00940000158761.b #27 ENSGT00940000165390.b.d ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160629.a ENSGT00940000166282.B ENSGT00940000163701.b.a.a.a.b ENSGT00940000163701.b.a.b ENSGT00940000160672 #30 ENSGT00940000158058.b #31 ENSGT00940000166430 #32 Otophysi ANCESTRAL SPECIES 18 ENSGT01100000263483.B.b.b ENSGT01100000263483.A ENSGT01100000263541.a.b ENSGT00940000154844.gc ENSGT00940000155521.a.b #20 ENSGT00940000174500 ENSGT01060000248588.a.c.a.b ENSGT00390000009004.c ENSGT00940000155898.q ENSGT00940000159553.a ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00940000166432.d.g ENSGT00940000178703 ENSGT00990000204690 ENSGT00940000158761.b #27 ENSGT00940000165390.b.c.b ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160629.a ENSGT00940000166282.B ENSGT00940000163701.b.a.a.a.b ENSGT00940000163701.b.a.b ENSGT00940000174541.b ENSGT00940000160672 #30 Cyprinoidei ANCESTRAL SPECIES 6 ENSGT00940000156991.a.a ENSGT00940000156808 ENSGT00940000159772 ENSGT00940000155355 ENSGT00950000183167.a.b.b.a ENSGT00530000064873.a ENSGT00390000016468 ENSGT00990000210067 ENSGT00940000158782.d.b ENSGT00940000155521.a.b #20 ENSGT00940000174500 ENSGT01060000248588.a.c.a.b ENSGT00390000009004.c ENSGT00940000155898.q ENSGT00940000159553.a ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000160554.a #24 ENSGT00940000166432.c.b.b.a.b.b.b ENSGT00940000167565 ENSGT00940000165390.b.d.h ENSGT00940000165390.b.d.g.b ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160629.a ENSGT00940000166282.B ENSGT00940000163701.b.a.a.a.b ENSGT00940000163701.b.a.b ENSGT00940000174541.b ENSGT00940000160672 #30 ENSGT00940000158058.b #31 Cyprininae ANCESTRAL SPECIES 242 ENSGT00940000156991.a.a.d ENSGT00940000156808.u.a ENSGT00940000159772.j ENSGT00940000155355.ib.a ENSGT00950000183167.a.b.b.a.c ENSGT00940000156818.mb.b ENSGT00390000016468.e ENSGT00940000158546.`b.a ENSGT00940000158782.d.b.b ENSGT00940000155521.a.b.a #20 ENSGT00940000174500 ENSGT01060000248588.a.c.a.b.a ENSGT00390000009004.c.b.a ENSGT00940000155898.q.a ENSGT00940000159553.a.b ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a.a.b #23 ENSGT00940000164173.a.b Cyprininae_a ANCESTRAL SPECIES 51 ENSGT00940000159772.i ENSGT00940000155355.ib.b ENSGT00950000183167.a.b.b.a.d ENSGT00940000156818.mb.a ENSGT00530000064873.a ENSGT00390000016468.e ENSGT00940000158546.`b.a ENSGT00940000158782.d.b.b ENSGT00940000155521.a.b.a #20 ENSGT00940000174500 ENSGT00990000210067 ENSGT01060000248588.a.c.a.b.a ENSGT00390000009004.c.b.a ENSGT00940000155898.q.a ENSGT00940000159553.a.b ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a.a.b #23 ENSGT00940000164173.a.b ENSGT00990000209936.B ENSGT00990000209936.A.a Common carp reference MODERN SPECIES 24 ENSCCRG00000019777 plpp5 (ENSCCRG00000075763) ENSCCRG00000036208 LETM2 (ENSCCRG00000036112) ENSCCRG00000026237 prnpb (ENSCCRG00000026239) ENSCCRG00000055109 rassf2b (ENSCCRG00000026240) kcnip3b (ENSCCRG00000078884) ENSCCRG00000027845 #20 avd (ENSCCRG00000008155) trpc7a (ENSCCRG00000008043) etf1b (ENSCCRG00000054199) fbxw11b (ENSCCRG00000005117) fgf18b (ENSCCRG00000066307) ENSCCRG00000005098 #22 ENSCCRG00000081101 #23 ENSCCRG00000005080 ENSCCRG00000026899 ENSCCRG00000026895 pcdh1a6 (ENSCCRG00000071127) ENSCCRG00000058111 cbln17 (ENSCCRG00000080170) ENSCCRG00000038102 #26 hrh2b (ENSCCRG00000038098) ENSCCRG00000050194 ENSCCRG00000061744 kcnip1b (ENSCCRG00000075219) #28 npm1a (ENSCCRG00000068283) #29 tlx3b (ENSCCRG00000049801) ugt5g2 (ENSCCRG00000026507) Golden-line barbel MODERN SPECIES 439 ENSSGRG00000055409 vsnl1b (ENSSGRG00000055408) afg1la (ENSSGRG00000055407) foxo3a (ENSSGRG00000055406) ddo (ENSSGRG00000055405) UST (ENSSGRG00000055404) SASH1 (ENSSGRG00000055403) SAMD5 (ENSSGRG00000055402) ENSSGRG00000055401 STXBP5 (ENSSGRG00000055398) avd (ENSSGRG00000055393) trpc7a (ENSSGRG00000055391) etf1b (ENSSGRG00000055387) ENSSGRG00000055385 fgf18b (ENSSGRG00000055384) ENSSGRG00000055383 #22 ENSSGRG00000055382 ENSSGRG00000055381 ENSSGRG00000055380 ENSSGRG00000055379 ENSSGRG00000055377 ENSSGRG00000055375 ENSSGRG00000055374 ENSSGRG00000055373 PCDHAC2 (ENSSGRG00000055372) #24 pcdh1g1 (ENSSGRG00000055371) ENSSGRG00000055370 pcdh1g2 (ENSSGRG00000055369) ENSSGRG00000055368 ENSSGRG00000055367 ENSSGRG00000055366 Goldfish MODERN SPECIES 1 ENSCARG00000014922 ENSCARG00000014852 plpp5 (ENSCARG00000014834) NSD3 (ENSCARG00000014720) LETM2 (ENSCARG00000014686) ENSCARG00000014670 ENSCARG00000014666 rassf2b (ENSCARG00000014656) kcnip3b (ENSCARG00000014591) PCDH1 (ENSCARG00000014587) #20 avd (ENSCARG00000014581) trpc7a (ENSCARG00000014465) etf1b (ENSCARG00000014436) fbxw11b (ENSCARG00000013466) fgf18b (ENSCARG00000013420) ENSCARG00000013412 #22 ENSCARG00000013404 ENSCARG00000013401 ENSCARG00000013396 ENSCARG00000013392 ENSCARG00000013390 ENSCARG00000013387 #31 cldn7b (ENSCARG00000013380) #30 ponzr2 (ENSCARG00000013377) ponzr2 (ENSCARG00000013370) ENSCARG00000013373 tlx3b (ENSCARG00000013368) npm1a (ENSCARG00000013362) #29 kcnip1b (ENSCARG00000013351) #28 ENSCARG00000013345 ENSCARG00000013284 Zebrafish MODERN SPECIES 1 DDHD2 (ENSDARG00000076765) plpp5 (ENSDARG00000057672) NSD3 (ENSDARG00000062765) LETM2 (ENSDARG00000077515) ENSDARG00000088831 prnpb (ENSDARG00000044048) sprn2 (ENSDARG00000057665) rassf2b (ENSDARG00000044044) kcnip3b (ENSDARG00000017880) PCDH1 (ENSDARG00000062720) #20 avd (ENSDARG00000087961) trpc7a (ENSDARG00000027523) etf1b (ENSDARG00000043976) fbxw11b (ENSDARG00000017230) fgf18b (ENSDARG00000043962) ENSDARG00000107353 #22 ENSDARG00000089562 #23 zgc:165539 (ENSDARG00000027639) pcdh1a6 (ENSDARG00000104598) pcdh1a3 (ENSDARG00000103602) pcdh1a4 (ENSDARG00000097170) pcdh1g1 (ENSDARG00000104007) pcdh1g2 (ENSDARG00000101232) pcdh1g3 (ENSDARG00000099646) ENSDARG00000112930 pcdh1gb2 (ENSDARG00000101307) pcdh1g9 (ENSDARG00000057519) pcdh1g11 (ENSDARG00000101665) pcdh1gb9 (ENSDARG00000088475) ENSDARG00000098963 ENSDARG00000104057 Characiphysae ANCESTRAL SPECIES 42 ENSGT00990000203615.b.b.a ENSGT00950000182818.C.b.e ENSGT00940000157126.f ENSGT00390000009255 ENSGT00940000164937.a.b ENSGT00940000156649.c.b ENSGT01050000244823.d.a.a.a.a.a ENSGT00940000155521.a.b #20 ENSGT00940000174500 ENSGT01060000248588.a.c.a.b ENSGT00390000009004.c ENSGT00940000158371 ENSGT00390000009004.d ENSGT00940000155898.r ENSGT00940000159553.a ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000164173.a.b ENSGT00940000164173.b.a.c.b ENSGT00990000204690 ENSGT00940000158761.b #27 ENSGT00940000165390.b.d ENSGT00940000158048.d #28 ENSGT00940000166176 #29 ENSGT00940000160629.a ENSGT00940000166282.B ENSGT00940000163701.b.a.a.a.b ENSGT00940000163701.b.a.b ENSGT00940000174541.b ENSGT00940000160672 #30 ENSGT00940000158058.b #31 Characiphysae_b ANCESTRAL SPECIES 9 ENSGT00390000006114 ENSGT00940000166058 ENSGT00390000003924 ENSGT00990000203615.b.b.a ENSGT00950000182818.C.b.e ENSGT00940000157126.f ENSGT00390000009255 ENSGT00940000164937.a.b ENSGT00940000156649.c.b ENSGT01050000244823.d.a.a.a.a.a ENSGT00940000155521.a.b #20 ENSGT00940000174500 ENSGT01060000248588.a.c.a.b ENSGT00390000009004.c ENSGT00940000159553.a ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000164173.a.b ENSGT00940000164173.b.a.c.b ENSGT00940000164173.b.a.c.a.b.d ENSGT00940000164173.b.a.c.a.a.a ENSGT00940000160554.a #24 ENSGT00940000166432.d.g.b.a ENSGT00940000178703 Characoidei ANCESTRAL SPECIES 40 ENSGT00940000156655 ENSGT00390000006114 ENSGT00940000166058 ENSGT00390000003924 ENSGT00990000203615.b.b.a ENSGT00950000182818.C.b.e ENSGT00940000157126.f ENSGT00390000009255 ENSGT00940000164937.a.b ENSGT00940000156649.c.b ENSGT00940000155521.a.b #20 ENSGT00940000174500 ENSGT01060000248588.a.c.a.b ENSGT00390000009004.c ENSGT00940000159553.a ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000164173.a.b.a ENSGT00940000164173.b.a.c.b ENSGT00940000164173.b.a.c.a.b.d ENSGT00940000164173.b.a.c.a.a.b ENSGT00940000164173.b.a.c.a.b.c ENSGT00940000164173.b.a.c.a.a.a ENSGT00940000160554.a #24 ENSGT00940000166432.d.g.b.a ENSGT00940000178703 ENSGT00940000164468.a.a.b.b.f.b.a ENSGT00940000164983.c.a.a.b.b ENSGT00390000017848 #26 ENSGT00940000158761.b #27 ENSGT00940000165390.b.d Red-bellied piranha MODERN SPECIES 246 ENSPNAG00000020751 ENSPNAG00000020762 ENSPNAG00000003659 ENSPNAG00000020793 ENSPNAG00000020810 ENSPNAG00000020858 ENSPNAG00000020870 zgc:113625 (ENSPNAG00000020877) ENSPNAG00000020886 PCDH1 (ENSPNAG00000020894) #20 avd (ENSPNAG00000020901) trpc7a (ENSPNAG00000022069) etf1b (ENSPNAG00000022201) FBXW11 (ENSPNAG00000022250) fgf18b (ENSPNAG00000022287) ENSPNAG00000022295 #22 ENSPNAG00000022303 #23 ENSPNAG00000022314 ENSPNAG00000022502 pcdh1a6 (ENSPNAG00000022520) ENSPNAG00000022651 PCDHAC2 (ENSPNAG00000022671) #24 ENSPNAG00000022688 ENSPNAG00000022736 ENSPNAG00000022747 ENSPNAG00000022798 ENSPNAG00000003737 ENSPNAG00000022838 ENSPNAG00000022851 ENSPNAG00000022877 ENSPNAG00000023221 Mexicana tetra MODERN SPECIES 12 taar15 (ENSAMXG00000025729) ENSAMXG00000033817 ENSAMXG00000032992 ENSAMXG00000029994 zgc:172131 (ENSAMXG00000038417) ENSAMXG00000037101 ENSAMXG00000006342 ENSAMXG00000006341 ENSAMXG00000039735 PCDH1 (ENSAMXG00000010404) #20 avd (ENSAMXG00000038963) trpc7a (ENSAMXG00000018973) etf1b (ENSAMXG00000040685) FBXW11 (ENSAMXG00000018813) fgf18b (ENSAMXG00000018793) ENSAMXG00000030938 #22 ENSAMXG00000039495 #23 ENSAMXG00000034381 ENSAMXG00000042154 ENSAMXG00000037804 ENSAMXG00000031113 ENSAMXG00000032814 ENSAMXG00000042378 ENSAMXG00000032404 ENSAMXG00000043020 ENSAMXG00000031253 PCDHAC2 (ENSAMXG00000018671) #24 pcdh1g33 (ENSAMXG00000041449) ENSAMXG00000040143 ENSAMXG00000040202 ENSAMXG00000040037 Clupeiformes ANCESTRAL SPECIES 152 ENSGT00390000010722.d ENSGT00940000155797 ENSGT00940000166715 ENSGT01100000263516.a.a.b ENSGT00940000154477.jc.b #18 ENSGT00940000156324.f.b #19 ENSGT01050000244823.d.a.a.b.f ENSGT01050000244823.d.a.a.a ENSGT01050000244823.d.a.a.b.e ENSGT00940000155521.a.b #20 ENSGT00940000174500 ENSGT01060000248588.a.c.a.b ENSGT00390000009004.c ENSGT00940000155898.r ENSGT00940000159553.a ENSGT00940000163777.b.a.b #22 ENSGT00940000164725.a.b.a #23 ENSGT00940000164173.a.b ENSGT00940000164173.b.a.c.a.b ENSGT00940000164173.b.a.c.a.a ENSGT00940000160554.a #24 ENSGT00940000166432.c.a ENSGT00940000166432.d ENSGT00940000165759 ENSGT00940000164468.a.a.b.b.e.b ENSGT00940000164468.a.a.b.a.a.a.b.a.a ENSGT00940000164468.a.a.a.a ENSGT00940000177103 ENSGT00940000164468.a.b.b.a ENSGT00940000159910 ENSGT01030000235223 Atlantic herring MODERN SPECIES 24 ENSCHAG00000026640 ENSCHAG00000026641 taar19p (ENSCHAG00000026642) taar15 (ENSCHAG00000026644) ENSCHAG00000026646 ENSCHAG00000026647 ENSCHAG00000026649 PCDH1 (ENSCHAG00000026651) #20 ENSCHAG00000026653 ENSCHAG00000026655 ENSCHAG00000026657 trpc7a (ENSCHAG00000000345) etf1b (ENSCHAG00000000871) FBXW11 (ENSCHAG00000001156) fgf18b (ENSCHAG00000001751) ENSCHAG00000001901 #22 ENSCHAG00000001910 #23 ENSCHAG00000001915 ENSCHAG00000001928 ENSCHAG00000001937 ENSCHAG00000001951 ENSCHAG00000002022 ENSCHAG00000002040 ENSCHAG00000002072 ENSCHAG00000002216 ENSCHAG00000002238 ENSCHAG00000002260 ENSCHAG00000002267 ENSCHAG00000002279 ENSCHAG00000002285 ENSCHAG00000002308 Denticle herring MODERN SPECIES 16 APBB1 (ENSDCDG00000034120) ROBO1 (ENSDCDG00000034295) #18 ROBO2 (ENSDCDG00000034933) #19 ENSDCDG00000035257 ENSDCDG00000035258 GIMAP5 (ENSDCDG00000035259) zgc:113625 (ENSDCDG00000035260) GIMAP5 (ENSDCDG00000035261) zgc:113625 (ENSDCDG00000035263) PCDH1 (ENSDCDG00000035266) #20 avd (ENSDCDG00000035267) trpc7a (ENSDCDG00000035287) etf1b (ENSDCDG00000035337) FBXW11 (ENSDCDG00000035344) fgf18b (ENSDCDG00000035367) ENSDCDG00000035368 #22 ENSDCDG00000000368 #23 PCDHAC2 (ENSDCDG00000000381) #24 ENSDCDG00000000392 ENSDCDG00000000398 ENSDCDG00000000400 pcdh1a6 (ENSDCDG00000000414) ENSDCDG00000000420 ENSDCDG00000000423 ENSDCDG00000000437 ENSDCDG00000000463 ENSDCDG00000000468 ENSDCDG00000000472 ENSDCDG00000000486 ENSDCDG00000000494 ENSDCDG00000000500