Percomorphaceae_B	ANCESTRAL SPECIES	10	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000177991 #10	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00950000183362 #21	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00970000198378 #25	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37
Ovalentaria	ANCESTRAL SPECIES	11	ENSGT00940000156066.p #7	ENSGT00940000178903	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00950000183362 #21	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00970000198378 #25	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37
Atherinomorphae	ANCESTRAL SPECIES	14	ENSGT00940000156066.p #7	ENSGT00940000178903	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00950000183362 #21	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00990000204690	ENSGT00970000198378 #25	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36
Cyprinodontiformes	ANCESTRAL SPECIES	11	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000178903	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00950000183362 #21	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Aplocheiloidei	ANCESTRAL SPECIES	33	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Turquoise killifish	MODERN SPECIES	1620	ENSNFUG00015023439	SEZ6A (ENSNFUG00015023466) #12	ENSNFUG00015023996	ENSNFUG00015023998	LHX1B (ENSNFUG00015024003) #13	ACACA (ENSNFUG00015024069) #14	tbx2a (ENSNFUG00015024769) #16	ppm1db (ENSNFUG00015024772) #17	ROBO1 (ENSNFUG00015024808) #18	ENSNFUG00015024915	ROBO2 (ENSNFUG00015024955) #19	ENSNFUG00015025066	ENSNFUG00015025068	PCDH1A (ENSNFUG00015025071) #20	ENSNFUG00015025074	PCDH10 (ENSNFUG00015025075) #22	PCDHAC2 (ENSNFUG00015025077) #23	PCDHAC2 (ENSNFUG00015025079) #24	FAM196B (ENSNFUG00015025082)	HRH2 (ENSNFUG00015025084) #27	KCNIP1B (ENSNFUG00015025085) #28	NPM1A (ENSNFUG00015025089) #29	cldn7b (ENSNFUG00015004702) #30	FGF11B (ENSNFUG00015004711) #31	nlgn2b (ENSNFUG00015004757) #32	ENSNFUG00015004876 #33	KDM6BB (ENSNFUG00015004887) #34	tmem88a (ENSNFUG00015004898) #35	PCOLCE (ENSNFUG00015004929) #36	VAMP2 (ENSNFUG00015004991) #37	MPP1 (ENSNFUG00015005016)
Mangrove rivulus	MODERN SPECIES	22	msi2a (ENSKMAG00000009494)	ENSKMAG00000009710	KSR1 (ENSKMAG00000009749) #7	VEZF1 (ENSKMAG00000009800) #8	ENSKMAG00000009815 #9	ENSKMAG00000009874 #11	SEZ6 (ENSKMAG00000010135) #12	lhx1b (ENSKMAG00000010158) #13	acaca (ENSKMAG00000010202) #14	tbx2a (ENSKMAG00000010328) #16	ppm1db (ENSKMAG00000010343) #17	ROBO1 (ENSKMAG00000010382) #18	ENSKMAG00000010481 #19	PCDH1 (ENSKMAG00000010555) #20	ENSKMAG00000010578	ENSKMAG00000010596 #22	ENSKMAG00000010613 #23	PCDHAC2 (ENSKMAG00000010638) #24	ENSKMAG00000010648 #26	HRH2 (ENSKMAG00000010662) #27	kcnip1b (ENSKMAG00000010676) #28	npm1a (ENSKMAG00000010709) #29	cldn7b (ENSKMAG00000010737) #30	ENSKMAG00000010766 #31	ENSKMAG00000010787 #31	ENSKMAG00000010799	nlgn2b (ENSKMAG00000010837) #32	ENSKMAG00000010875 #33	kdm6bb (ENSKMAG00000010892) #34	tmem88a (ENSKMAG00000010911) #35	pcolcea (ENSKMAG00000010926) #36
Cyprinodontoidei	ANCESTRAL SPECIES	5	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000178903	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00950000183362 #21	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
NAME_4	ANCESTRAL SPECIES	5	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744	ENSGT00530000063582.a
Mummichog	MODERN SPECIES	2214	glra4b (ENSFHEG00000002776)	ENSFHEG00000002824	msi2a (ENSFHEG00000000084)	KSR1 (ENSFHEG00000002966) #7	ENSFHEG00000002988 #9	ENSFHEG00000003027 #11	SEZ6 (ENSFHEG00000003172) #12	lhx1b (ENSFHEG00000003203) #13	acaca (ENSFHEG00000003274) #14	ppm1db (ENSFHEG00000003283) #17	ENSFHEG00000003296 #18	ENSFHEG00000003301 #18	ENSFHEG00000003314 #19	ENSFHEG00000003327	PCDH1 (ENSFHEG00000000096) #20	ENSFHEG00000003432 #22	PCDHAC2 (ENSFHEG00000003449) #24
Sheepshead minnow	MODERN SPECIES	168														ENSCVAG00000008883 #19	PCDH1 (ENSCVAG00000008897) #20	ENSCVAG00000008901 #22	ENSCVAG00000008913 #23	PCDHAC2 (ENSCVAG00000008923) #24	HRH2 (ENSCVAG00000008936) #27	kcnip1b (ENSCVAG00000008950) #28	npm1a (ENSCVAG00000008960) #29	cldn7b (ENSCVAG00000008965) #30	FGF11 (ENSCVAG00000008999) #31	nlgn2b (ENSCVAG00000009024) #32	ENSCVAG00000009033 #33	kdm6bb (ENSCVAG00000009082) #34	tmem88a (ENSCVAG00000009096) #35	pcolcea (ENSCVAG00000009104) #36	vamp2 (ENSCVAG00000009117) #37	mpp1 (ENSCVAG00000009127)	TMLHE (ENSCVAG00000009148)
Poeciliinae	ANCESTRAL SPECIES	17	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000178903	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00950000183362 #21	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Poecilia	ANCESTRAL SPECIES	7	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000178903	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00950000183362 #21	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
NAME_6	ANCESTRAL SPECIES	16	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b.d #19	ENSGT00940000156324.f.b.c #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Sailfin molly	MODERN SPECIES	412																ENSPLAG00000001083 #22	ENSPLAG00000001084 #23	PCDHAC2 (ENSPLAG00000001085) #24	HRH2 (ENSPLAG00000001087) #27	kcnip1b (ENSPLAG00000001089) #28	npm1a (ENSPLAG00000001093) #29	cldn7b (ENSPLAG00000001097) #30	ENSPLAG00000001100 #31
Guppy	MODERN SPECIES	444	ENSPREG00000000960 #7	ENSPREG00000000973	VEZF1 (ENSPREG00000000999) #8	ENSPREG00000001006 #9	ENSPREG00000001048 #11	SEZ6 (ENSPREG00000001190) #12	ENSPREG00000001213 ##13	acaca (ENSPREG00000001223) #14	ENSPREG00000001395 #16	ppm1db (ENSPREG00000001418) #17	ENSPREG00000001431 ##18	ROBO1 (ENSPREG00000001437) #18	ENSPREG00000001469 #19	PCDH1 (ENSPREG00000001526) #20	ENSPREG00000001556 #21	ENSPREG00000001576 #22	ENSPREG00000001582 #23	PCDHAC2 (ENSPREG00000001597) #24	HRH2 (ENSPREG00000001612) #27	kcnip1b (ENSPREG00000001624) #28	npm1a (ENSPREG00000001647) #29	cldn7b (ENSPREG00000001658) #30	ENSPREG00000001665 #31	nlgn2b (ENSPREG00000001696) #32	ENSPREG00000001729 #33	kdm6bb (ENSPREG00000001746) #34	tmem88a (ENSPREG00000001803) #35	vamp2 (ENSPREG00000001829) #37	mpp1 (ENSPREG00000001845)	ENSPREG00000001903	ENSPREG00000001933
Platyfish	MODERN SPECIES	2	KSR1 (ENSXMAG00000000598) #7	VEZF1 (ENSXMAG00000021356) #8	ENSXMAG00000026833 #9	ENSXMAG00000000579 #11	SEZ6 (ENSXMAG00000000571) #12	lhx1b (ENSXMAG00000000565) #13	acaca (ENSXMAG00000000487) #14	tbx2a (ENSXMAG00000000486) #16	ppm1db (ENSXMAG00000000484) #17	ENSXMAG00000027104 #18	ROBO2 (ENSXMAG00000000420) #19	ENSXMAG00000026173	PCDH1 (ENSXMAG00000000419) #20	ENSXMAG00000019451	ENSXMAG00000021668 #21	ENSXMAG00000000418 #22	ENSXMAG00000026894 #23	PCDHAC2 (ENSXMAG00000026972) #24	ENSXMAG00000023262	HRH2 (ENSXMAG00000024792) #27	kcnip1b (ENSXMAG00000000405) #28	npm1a (ENSXMAG00000000396) #29	cldn7b (ENSXMAG00000000393) #30	FGF11 (ENSXMAG00000000385) #31	nlgn2b (ENSXMAG00000000369) #32	ENSXMAG00000000366 #33	kdm6bb (ENSXMAG00000000363) #34	tmem88a (ENSXMAG00000024040) #35	pcolcea (ENSXMAG00000000354) #36	vamp2 (ENSXMAG00000000353) #37	mpp1 (ENSXMAG00000004921)
Oryzias	ANCESTRAL SPECIES	14	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00990000204690	ENSGT00970000198378 #25	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36
Oryzias_b	ANCESTRAL SPECIES	13	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00990000204690	ENSGT00970000198378 #25	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36
Indian medaka	MODERN SPECIES	4	ENSOMEG00000006275	KSR1 (ENSOMEG00000006366) #7	VEZF1 (ENSOMEG00000006393) #8	ENSOMEG00000006403 #9	ENSOMEG00000006500 #11	SEZ6 (ENSOMEG00000006541) #12	lhx1b (ENSOMEG00000006567) #13	acaca (ENSOMEG00000006649) #14	ENSOMEG00000000824 #16	ppm1db (ENSOMEG00000006679) #17	ROBO1 (ENSOMEG00000006795) #18	ROBO2 (ENSOMEG00000006879) #19	PCDH1 (ENSOMEG00000006912) #20	ENSOMEG00000006921	ENSOMEG00000006929 #21	ENSOMEG00000006940 #22	ENSOMEG00000006944 #23	PCDHAC2 (ENSOMEG00000006953) #24	ENSOMEG00000006970	HRH2 (ENSOMEG00000006985) #27	kcnip1b (ENSOMEG00000007050) #28	npm1a (ENSOMEG00000007083) #29	cldn7b (ENSOMEG00000007100) #30	ENSOMEG00000000168 #31	nlgn2b (ENSOMEG00000007179) #32	ENSOMEG00000007211 #33	kdm6bb (ENSOMEG00000007268) #34	tmem88a (ENSOMEG00000007296) #35	pcolcea (ENSOMEG00000007308) #36	vamp2 (ENSOMEG00000007317) #37	mpp1 (ENSOMEG00000007364)
Javanese ricefish	MODERN SPECIES	5	ENSOJAG00000013564	msi2a (ENSOJAG00000013082)	ENSOJAG00000013002	KSR1 (ENSOJAG00000012653) #7	VEZF1 (ENSOJAG00000012619) #8	ENSOJAG00000012595 #9	ENSOJAG00000011508 #11	SEZ6 (ENSOJAG00000010565) #12	lhx1b (ENSOJAG00000010453) #13	tbx2a (ENSOJAG00000004628) #16	ppm1db (ENSOJAG00000004615) #17	ROBO1 (ENSOJAG00000003022) #18	ROBO2 (ENSOJAG00000002064) #19	ENSOJAG00000001810	PCDH1 (ENSOJAG00000001796) #20	ENSOJAG00000001794 #22	PCDHAC2 (ENSOJAG00000001757) #24	ENSOJAG00000001738 #25	ENSOJAG00000001724 #26	HRH2 (ENSOJAG00000019508) #27	kcnip1b (ENSOJAG00000019484) #28	npm1a (ENSOJAG00000019410) #29	cldn7b (ENSOJAG00000019397) #30	ENSOJAG00000019367 #31	nlgn2b (ENSOJAG00000019219) #32	ENSOJAG00000019192 #33	tmem88a (ENSOJAG00000019175) #35	pcolcea (ENSOJAG00000019146) #36	vamp2 (ENSOJAG00000019137) #37	TMLHE (ENSOJAG00000019117)	mpp1 (ENSOJAG00000019052)
Oryzias_a	ANCESTRAL SPECIES	2	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00950000183362 #21	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00990000204690	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Chinese medaka	MODERN SPECIES	717	ENSOSIG00000019532	KSR1 (ENSOSIG00000019530) #7	VEZF1 (ENSOSIG00000019526) #8	ENSOSIG00000019520 #9	ENSOSIG00000015895 #11	ENSOSIG00000015798 #12	lhx1b (ENSOSIG00000015796) #13	TBX2 (ENSOSIG00000015687) #16	ppm1db (ENSOSIG00000015685) #17	ROBO1 (ENSOSIG00000015563) #18	ROBO2 (ENSOSIG00000014733) #19	PCDH1 (ENSOSIG00000014719) #20	ENSOSIG00000014718	ENSOSIG00000014717	ENSOSIG00000014716	ENSOSIG00000014715 #22	ENSOSIG00000014714 #23	PCDHAC2 (ENSOSIG00000014713) #24	ENSOSIG00000014712	HRH2 (ENSOSIG00000014711) #27	kcnip1b (ENSOSIG00000014673) #28	npm1a (ENSOSIG00000014667) #29	cldn7b (ENSOSIG00000014664) #30	ENSOSIG00000014661 #31
Japanese Medaka HdrR	MODERN SPECIES	5	ENSORLG00000009845 #11	SEZ6 (ENSORLG00000009861) #12	lhx1b (ENSORLG00000009889) #13	acaca (ENSORLG00000009998) #14	ENSORLG00000026949 #14	ENSORLG00000022232 #15	tbx2a (ENSORLG00000010011) #16	ppm1db (ENSORLG00000010017) #17	ENSORLG00000010043 #18	ENSORLG00000010067 #19	ENSORLG00000026763	ENSORLG00000024209	PCDH1 (ENSORLG00000010092) #20	ENSORLG00000028076	ENSORLG00000030001 #21	ENSORLG00000026884 #22	ENSORLG00000023878 #23	PCDHAC2 (ENSORLG00000010124) #24	ENSORLG00000026282	HRH2 (ENSORLG00000010128) #27	kcnip1b (ENSORLG00000010149) #28	npm1a (ENSORLG00000010179) #29	cldn7b (ENSORLG00000010194) #30	ENSORLG00000023090 #31	ENSORLG00000028085	nlgn2b (ENSORLG00000010232) #32	ENSORLG00000025447	ENSORLG00000010242 #33	kdm6bb (ENSORLG00000010264) #34	ENSORLG00000030519 #35	pcolcea (ENSORLG00000010290) #36
Ovalentaria_B	ANCESTRAL SPECIES	16	ENSGT00940000156066.p #7	ENSGT00940000178903	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000177991 #10	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Pomacentridae	ANCESTRAL SPECIES	10	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000177991 #10	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Pomacentridae_A	ANCESTRAL SPECIES	3	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000177991 #10	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Amphiprion	ANCESTRAL SPECIES	3	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000177991 #10	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Orange clownfish	MODERN SPECIES	6	VEZF1 (ENSAPEG00000007907) #8	ENSAPEG00000007914 #9	ENSAPEG00000007938 #10	ENSAPEG00000007947 #11	SEZ6 (ENSAPEG00000008069) #12	lhx1b (ENSAPEG00000008085) #13	acaca (ENSAPEG00000008092) #14	ENSAPEG00000008209 #14	ENSAPEG00000008227 #15	tbx2a (ENSAPEG00000008239) #16	ppm1db (ENSAPEG00000008249) #17	ENSAPEG00000008258 #18	ENSAPEG00000008293	ENSAPEG00000008386 #19	PCDH1 (ENSAPEG00000008451) #20	ENSAPEG00000008479 #22	ENSAPEG00000008487 #23	PCDHAC2 (ENSAPEG00000008491) #24	ENSAPEG00000008518 #26	HRH2 (ENSAPEG00000008522) #27	kcnip1b (ENSAPEG00000008545) #28	npm1a (ENSAPEG00000008594) #29	cldn7b (ENSAPEG00000008614) #30	FGF11 (ENSAPEG00000008651) #31	nlgn2b (ENSAPEG00000008681) #32	ENSAPEG00000008708 #33	kdm6bb (ENSAPEG00000008717) #34	pcolcea (ENSAPEG00000008760) #36	tmem88a (ENSAPEG00000008794) #35	vamp2 (ENSAPEG00000008822) #37	mpp1 (ENSAPEG00000008835)
Clown anemonefish	MODERN SPECIES	1279															ENSAOCG00000004878 #20	ENSAOCG00000000195 #22	ENSAOCG00000004925 #23	PCDHAC2 (ENSAOCG00000004930) #24	HRH2 (ENSAOCG00000004938) #27	kcnip1b (ENSAOCG00000004964) #28	npm1a (ENSAOCG00000004978) #29	cldn7b (ENSAOCG00000004986) #30	FGF11 (ENSAOCG00000002646) #31	nlgn2b (ENSAOCG00000005010) #32	ENSAOCG00000005015 #33	kdm6bb (ENSAOCG00000005033) #34	tmem88a (ENSAOCG00000005046) #35	pcolcea (ENSAOCG00000000207) #36	vamp2 (ENSAOCG00000005061) #37	mpp1 (ENSAOCG00000005081)	TMLHE (ENSAOCG00000005094)
Spiny chromis	MODERN SPECIES	458														PCDH1 (ENSAPOG00000007957) #20	ENSAPOG00000007975	ENSAPOG00000007982 #22	ENSAPOG00000007987 #23	PCDHAC2 (ENSAPOG00000007994) #24	ENSAPOG00000008000 #26	HRH2 (ENSAPOG00000008020) #27	ENSAPOG00000008041
Bicolor damselfish	MODERN SPECIES	507														ENSSPAG00000003709 #19	PCDH1 (ENSSPAG00000003746) #20	ENSSPAG00000003861 #22	ENSSPAG00000004639 #23	PCDHAC2 (ENSSPAG00000004650) #24	HRH2 (ENSSPAG00000004665) #27	fez1 (ENSSPAG00000004671)
Cichlidae	ANCESTRAL SPECIES	4	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000178903	ENSGT00940000155932.b.b #8	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Pseudocrenilabrinae	ANCESTRAL SPECIES	14	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000178903	ENSGT00940000155932.b.b #8	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	21	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000178903	ENSGT00940000155932.b.b #8	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Haplochromini	ANCESTRAL SPECIES	8	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000178903	ENSGT00940000155932.b.b #8	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b.e #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Haplochromini_A	ANCESTRAL SPECIES	6	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT00940000155768.A #11	ENSGT00940000176839.c.b.a.b.a.b	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b.e #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Haplochromini_B	ANCESTRAL SPECIES	26	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT00940000155768.A #11	ENSGT00940000176839.c.b.a.b.a.b	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b.e #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Eastern happy	MODERN SPECIES	1	ENSACLG00000007723	msi2a (ENSACLG00000007752)	ENSACLG00000007821	KSR1 (ENSACLG00000007829) #7	VEZF1 (ENSACLG00000008062) #8	ENSACLG00000008066 #11	SEZ6 (ENSACLG00000008116) #12	lhx1b (ENSACLG00000008123) #13	acaca (ENSACLG00000008135) #14	tbx2a (ENSACLG00000008196) #16	ppm1db (ENSACLG00000008212) #17	ROBO1 (ENSACLG00000008219) #18	ROBO2 (ENSACLG00000008288) #19	ENSACLG00000008326	PCDH1 (ENSACLG00000008333) #20	ENSACLG00000008338 #22	ENSACLG00000008340 #23	PCDHAC2 (ENSACLG00000008341) #24	ENSACLG00000008343 #26	HRH2 (ENSACLG00000008345) #27	kcnip1b (ENSACLG00000008347) #28	npm1a (ENSACLG00000008376) #29	cldn7b (ENSACLG00000008390) #30	FGF11 (ENSACLG00000008398) #31	ENSACLG00000008405	ENSACLG00000008413	nlgn2b (ENSACLG00000008426) #32	ENSACLG00000008439 #33	kdm6bb (ENSACLG00000008442) #34	tmem88a (ENSACLG00000008457) #35	pcolcea (ENSACLG00000008464) #36
Zebra mbuna	MODERN SPECIES	1092	CNIH2 (ENSMZEG00005013449)	tm7sf2 (ENSMZEG00005013458)	vps51 (ENSMZEG00005013481)	frmd8 (ENSMZEG00005013504)	rom1a (ENSMZEG00005013515)	zfpl1 (ENSMZEG00005013521)	FLRT1 (ENSMZEG00005013528)	rps6ka4 (ENSMZEG00005013541)	stip1 (ENSMZEG00005013574)	ENSMZEG00005013586	ENSMZEG00005013597	AKAP10 (ENSMZEG00005013626)	zgc:85789 (ENSMZEG00005013643)	ENSMZEG00005013658	PCDH1 (ENSMZEG00005013663) #20	ENSMZEG00005013667 #22	ENSMZEG00005013674 #23	PCDHAC2 (ENSMZEG00005013682) #24	HRH2 (ENSMZEG00005013687) #27	kcnip1b (ENSMZEG00005013696) #28	npm1a (ENSMZEG00005013717) #29	cldn7b (ENSMZEG00005013733) #30	FGF11 (ENSMZEG00005013737) #31	nlgn2b (ENSMZEG00005013745) #32	ENSMZEG00005013750 #33	kdm6bb (ENSMZEG00005013759) #34	tmem88a (ENSMZEG00005013769) #35	pcolcea (ENSMZEG00005013775) #36	vamp2 (ENSMZEG00005013780) #37	mpp1 (ENSMZEG00005013784)	TMLHE (ENSMZEG00005013795)
P. nyererei	MODERN SPECIES	375	ENSPNYG00000018349	msi2a (ENSPNYG00000018393)	ENSPNYG00000018465	KSR1 (ENSPNYG00000018480) #7	VEZF1 (ENSPNYG00000018570) #8	ENSPNYG00000018584 #11	ENSPNYG00000018673	SEZ6 (ENSPNYG00000018729) #12	lhx1b (ENSPNYG00000018948) #13	acaca (ENSPNYG00000018975) #14	tbx2a (ENSPNYG00000019065) #16	ppm1db (ENSPNYG00000019091) #17	ENSPNYG00000019150 #18	ENSPNYG00000019208 #19	PCDH1 (ENSPNYG00000019237) #20	ENSPNYG00000019247 #22	ENSPNYG00000019260 #23	PCDHAC2 (ENSPNYG00000019271) #24	HRH2 (ENSPNYG00000019278) #27	kcnip1b (ENSPNYG00000019296) #28	npm1a (ENSPNYG00000019321) #29	cldn7b (ENSPNYG00000019376) #30	FGF11 (ENSPNYG00000019395) #31	nlgn2b (ENSPNYG00000019410) #32	ENSPNYG00000019431 #33	kdm6bb (ENSPNYG00000019447) #34	tmem88a (ENSPNYG00000019468) #35	pcolcea (ENSPNYG00000019477) #36	vamp2 (ENSPNYG00000019507) #37	mpp1 (ENSPNYG00000019578)
Burton s mouthbrooder	MODERN SPECIES	406																ENSHBUG00000022498 #22	ENSHBUG00000022492 #23	PCDHAC2 (ENSHBUG00000022477) #24	ENSHBUG00000000687 #26	HRH2 (ENSHBUG00000022462) #27	kcnip1b (ENSHBUG00000022452) #28	npm1a (ENSHBUG00000000776) #29	cldn7b (ENSHBUG00000022415) #30	FGF11 (ENSHBUG00000000917) #31	nlgn2b (ENSHBUG00000000681) #32	ENSHBUG00000022304 #33	kdm6bb (ENSHBUG00000022288) #34	tmem88a (ENSHBUG00000022259) #35	pcolcea (ENSHBUG00000022245) #36	vamp2 (ENSHBUG00000022241) #37	mpp1 (ENSHBUG00000022236)
Lyretail cichlid	MODERN SPECIES	354	msi2a (ENSNBRG00000014596)	ENSNBRG00000014576	ENSNBRG00000014567 #7	KSR1 (ENSNBRG00000014534) #7	VEZF1 (ENSNBRG00000014527) #8	ENSNBRG00000014413 #11	SEZ6 (ENSNBRG00000014251) #12	ENSNBRG00000014225 #13	ENSNBRG00000014218 #13	acaca (ENSNBRG00000014106) #14	tbx2a (ENSNBRG00000014000) #16	ppm1db (ENSNBRG00000013923) #17	ENSNBRG00000013907 #18	ENSNBRG00000013878 #19	PCDH1 (ENSNBRG00000013845) #20	ENSNBRG00000013313 #22	PCDHAC2 (ENSNBRG00000013243) #24	HRH2 (ENSNBRG00000013209) #27	kcnip1b (ENSNBRG00000013192) #28	npm1a (ENSNBRG00000013172) #29	cldn7b (ENSNBRG00000013165) #30	FGF11 (ENSNBRG00000013151) #31	nlgn2b (ENSNBRG00000013121) #32	ENSNBRG00000013103 #33	kdm6bb (ENSNBRG00000013075) #34	tmem88a (ENSNBRG00000013062) #35	pcolcea (ENSNBRG00000013045) #36	vamp2 (ENSNBRG00000013031) #37	mpp1 (ENSNBRG00000013022)	TMLHE (ENSNBRG00000013003)	ENSNBRG00000012986
Nile tilapia	MODERN SPECIES	1	glra4b (ENSONIG00000012879)	ENSONIG00000012882	msi2a (ENSONIG00000012884)	ENSONIG00000001971	KSR1 (ENSONIG00000001966) #7	VEZF1 (ENSONIG00000001964) #8	ENSONIG00000001955 #11	SEZ6 (ENSONIG00000001950) #12	lhx1b (ENSONIG00000001948) #13	acaca (ENSONIG00000001922) #14	tbx2a (ENSONIG00000001919) #16	ppm1db (ENSONIG00000001916) #17	ROBO1 (ENSONIG00000001894) #18	ROBO2 (ENSONIG00000001873) #19	PCDH1 (ENSONIG00000001872) #20	ENSONIG00000001870 #22	ENSONIG00000029439 #23	PCDHAC2 (ENSONIG00000027636) #24	ENSONIG00000028883 #26	HRH2 (ENSONIG00000001869) #27	kcnip1b (ENSONIG00000001865) #28	npm1a (ENSONIG00000001860) #29	cldn7b (ENSONIG00000001856) #30	FGF11 (ENSONIG00000001855) #31	nlgn2b (ENSONIG00000001843) #32	ENSONIG00000001842 #33	kdm6bb (ENSONIG00000001837) #34	tmem88a (ENSONIG00000001835) #35	pcolcea (ENSONIG00000001827) #36	vamp2 (ENSONIG00000007000) #37	mpp1 (ENSONIG00000033236)
Midas cichlid	MODERN SPECIES	1216												ppm1db (ENSACIG00000013809) #17	ROBO1 (ENSACIG00000013868) #18	ENSACIG00000014085 #19	PCDH1 (ENSACIG00000014114) #20	ENSACIG00000014127 #22	ENSACIG00000014140 #23	PCDHAC2 (ENSACIG00000014146) #24	HRH2 (ENSACIG00000014166) #27	kcnip1b (ENSACIG00000014180) #28	npm1a (ENSACIG00000014201) #29	cldn7b (ENSACIG00000014224) #30	FGF11 (ENSACIG00000014232) #31	nlgn2b (ENSACIG00000014246) #32	ENSACIG00000014265 #33	kdm6bb (ENSACIG00000014279) #34	tmem88a (ENSACIG00000014307) #35	pcolcea (ENSACIG00000014313) #36	vamp2 (ENSACIG00000014327) #37	mpp1 (ENSACIG00000014338)	TMLHE (ENSACIG00000014392)
Percomorphaceae_C	ANCESTRAL SPECIES	10	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000177991 #10	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00950000183362 #21	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Percomorphaceae_D	ANCESTRAL SPECIES	16	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000177991 #10	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00950000183362 #21	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Anabantaria	ANCESTRAL SPECIES	13	ENSGT00940000166502	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Zig-zag eel	MODERN SPECIES	5	ENSMAMG00000011728	ENSMAMG00000010608	ENSMAMG00000027967	ENSMAMG00000010503	ENSMAMG00000010490	ENSMAMG00000010422 #7	ENSMAMG00000010399 #8	ENSMAMG00000010318 #11	ENSMAMG00000009882 #12	lhx1b (ENSMAMG00000009864) #13	tbx2a (ENSMAMG00000009659) #16	ppm1db (ENSMAMG00000009633) #17	ENSMAMG00000009593 #18	ENSMAMG00000009453 #19	ENSMAMG00000009440 #20	ENSMAMG00000024866 #22	ENSMAMG00000009414 #24	ENSMAMG00000009407 #26	ENSMAMG00000009396 #27	ENSMAMG00000009385	ENSMAMG00000009361 #28	ENSMAMG00000009344 #29	cldn7b (ENSMAMG00000009333) #30	ENSMAMG00000009318 #31	nlgn2b (ENSMAMG00000009287) #32	ENSMAMG00000009273 #33	kdm6bb (ENSMAMG00000009257) #34	tmem88a (ENSMAMG00000009236) #35	pcolcea (ENSMAMG00000009224) #36	vamp2 (ENSMAMG00000008921) #37	ENSMAMG00000008897
Anabantoidei	ANCESTRAL SPECIES	12	ENSGT00940000166502	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Siamese fighting fish	MODERN SPECIES	5	ENSBSLG00000018499	ENSBSLG00000018544	ENSBSLG00000018578	msi2a (ENSBSLG00000018598)	ENSBSLG00000019296	ENSBSLG00000019323 #8	ENSBSLG00000019468 #11	SEZ6 (ENSBSLG00000019848) #12	lhx1b (ENSBSLG00000020217) #13	acaca (ENSBSLG00000021616) #14	tbx2a (ENSBSLG00000025187) #16	ppm1db (ENSBSLG00000025189) #17	ENSBSLG00000025436 #18	ENSBSLG00000025638 #19	PCDH1 (ENSBSLG00000025866) #20	ENSBSLG00000025867 #22	ENSBSLG00000025868 #23	PCDHAC2 (ENSBSLG00000025869) #24	ENSBSLG00000025870 #26	ENSBSLG00000025871 #27	kcnip1b (ENSBSLG00000025873) #28	npm1a (ENSBSLG00000025948) #29	cldn7b (ENSBSLG00000025970) #30	ENSBSLG00000025980 #31	nlgn2b (ENSBSLG00000026011) #32	ENSBSLG00000026030 #33	kdm6bb (ENSBSLG00000026034) #34	tmem88a (ENSBSLG00000026044) #35	pcolcea (ENSBSLG00000026054) #36	vamp2 (ENSBSLG00000026060) #37	TMLHE (ENSBSLG00000026062)
Climbing perch	MODERN SPECIES	5	ENSATEG00000010578	ENSATEG00000010498	ENSATEG00000028168	ENSATEG00000010426 #7	ENSATEG00000010402 #8	ENSATEG00000010241 #11	ENSATEG00000009906 #12	lhx1b (ENSATEG00000009832) #13	acaca (ENSATEG00000009623) #14	tbx2a (ENSATEG00000009530) #16	ppm1db (ENSATEG00000009495) #17	ENSATEG00000009428 #18	ENSATEG00000009376 #19	ENSATEG00000009342 #20	ENSATEG00000027525	ENSATEG00000009080 #22	ENSATEG00000009035 #23	ENSATEG00000009029 #24	ENSATEG00000009006 #27	ENSATEG00000008898 #28	ENSATEG00000027376 #29	cldn7b (ENSATEG00000008858) #30	ENSATEG00000008836 #31	ENSATEG00000027454 #31	nlgn2b (ENSATEG00000030106) #32	ENSATEG00000008791 #33	ENSATEG00000030165 #33	kdm6bb (ENSATEG00000008705) #34	tmem88a (ENSATEG00000008691) #35	pcolcea (ENSATEG00000008687) #36	vamp2 (ENSATEG00000008672) #37
Carangaria	ANCESTRAL SPECIES	16	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000177991 #10	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00950000183362 #21	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Carangaria_A	ANCESTRAL SPECIES	8	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000177991 #10	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a.c #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744	ENSGT00530000063582.a
Seriola	ANCESTRAL SPECIES	2	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000177991 #10	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a.c #13	ENSGT00940000156706.b #14	ENSGT00940000178675 #15	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744	ENSGT00530000063582.a
Yellowtail amberjack	MODERN SPECIES	2973	ENSSLDG00000017220	KSR1 (ENSSLDG00000017241) #7	ENSSLDG00000017285 #8	ENSSLDG00000017299 #9	ENSSLDG00000017308 #10	ENSSLDG00000017336 #11	SEZ6 (ENSSLDG00000017402) #12	lhx1b (ENSSLDG00000017427) #13	acaca (ENSSLDG00000017462) #14	ENSSLDG00000017565 #15	tbx2a (ENSSLDG00000017580) #16	ppm1db (ENSSLDG00000017589) #17	ROBO1 (ENSSLDG00000017612) #18	ENSSLDG00000017699 #19	PCDH1 (ENSSLDG00000017748) #20	ENSSLDG00000017759 #22	ENSSLDG00000017772 #23	PCDHAC2 (ENSSLDG00000017781) #24	HRH2 (ENSSLDG00000017793) #27	kcnip1b (ENSSLDG00000017813) #28	npm1a (ENSSLDG00000017849) #29	cldn7b (ENSSLDG00000017874) #30	ENSSLDG00000017891 #31	nlgn2b (ENSSLDG00000017919) #32	ENSSLDG00000017950 #33	kdm6bb (ENSSLDG00000017966) #34	tmem88a (ENSSLDG00000018025) #35	pcolcea (ENSSLDG00000018038) #36	vamp2 (ENSSLDG00000018051) #37	mpp1 (ENSSLDG00000018059)	TMLHE (ENSSLDG00000018087)
Greater amberjack	MODERN SPECIES	39	msi2a (ENSSDUG00000014507)	ENSSDUG00000014633	KSR1 (ENSSDUG00000014649) #7	VEZF1 (ENSSDUG00000014706) #8	ENSSDUG00000014715 #9	ENSSDUG00000014731 #11	SEZ6 (ENSSDUG00000014823) #12	lhx1b (ENSSDUG00000015049) #13	acaca (ENSSDUG00000015072) #14	tbx2a (ENSSDUG00000015169) #16	ppm1db (ENSSDUG00000015198) #17	ENSSDUG00000015309 #18	ENSSDUG00000015322	ENSSDUG00000015333 #19	PCDH1 (ENSSDUG00000015358) #20	ENSSDUG00000015390 #22	ENSSDUG00000015563 #23	PCDHAC2 (ENSSDUG00000015572) #24	HRH2 (ENSSDUG00000015582) #27	kcnip1b (ENSSDUG00000015591) #28	npm1a (ENSSDUG00000015609) #29	cldn7b (ENSSDUG00000015623) #30	FGF11 (ENSSDUG00000015630) #31	nlgn2b (ENSSDUG00000015644) #32	ENSSDUG00000015656 #33	kdm6bb (ENSSDUG00000015668) #34	tmem88a (ENSSDUG00000015683) #35	pcolcea (ENSSDUG00000015694) #36	ENSSDUG00000015706	vamp2 (ENSSDUG00000015716) #37	mpp1 (ENSSDUG00000015726)
Barramundi perch	MODERN SPECIES	94	ENSLCAG00010022181	msi2a (ENSLCAG00010022089)	OMG (ENSLCAG00010022051)	KSR1 (ENSLCAG00010022025) #7	VEZF1 (ENSLCAG00010021999) #8	ENSLCAG00010021997 #9	ENSLCAG00010021758 #11	SEZ6 (ENSLCAG00010021648) #12	lhx1b (ENSLCAG00010021635) #13	acaca (ENSLCAG00010021522) #14	tbx2a (ENSLCAG00010021471) #16	ppm1db (ENSLCAG00010021470) #17	ENSLCAG00010021369 #18	ROBO2 (ENSLCAG00010021147) #19	PCDH1 (ENSLCAG00010021078) #20	ENSLCAG00010021077 #22	ENSLCAG00010021076 #23	PCDHAC2 (ENSLCAG00010021073) #24	HRH2 (ENSLCAG00010021072) #27	kcnip1b (ENSLCAG00010021065) #28	npm1a (ENSLCAG00010021047) #29	cldn7b (ENSLCAG00010021036) #30	ENSLCAG00010021033 #31	nlgn2b (ENSLCAG00010021003) #32	ENSLCAG00010020993 #33	kdm6bb (ENSLCAG00010020985) #34	tmem88a (ENSLCAG00010020982) #35	pcolcea (ENSLCAG00010020976) #36	vamp2 (ENSLCAG00010020964) #37	mpp1 (ENSLCAG00010020925)	TMLHE (ENSLCAG00010020912)
Pleuronectoidei	ANCESTRAL SPECIES	27	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00950000183362 #21	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Turbot	MODERN SPECIES	16	ENSSMAG00000018484	ENSSMAG00000033378	ENSSMAG00000018550 #7	ENSSMAG00000021630 #8	ENSSMAG00000018648 #9	ENSSMAG00000018653 #11	ENSSMAG00000018683	ENSSMAG00000018687 #12	lhx1b (ENSSMAG00000018705) #13	acaca (ENSSMAG00000018733) #14	tbx2a (ENSSMAG00000018798) #16	ppm1db (ENSSMAG00000018804) #17	ENSSMAG00000018817 #18	ENSSMAG00000018887 #19	ENSSMAG00000018935 #20	ENSSMAG00000018975 #22	ENSSMAG00000018984	ENSSMAG00000018993 #24	ENSSMAG00000018999 #26	ENSSMAG00000019007 #27	ENSSMAG00000019010 #28	ENSSMAG00000019090 #29	cldn7b (ENSSMAG00000019124) #30	ENSSMAG00000019125 #31	nlgn2b (ENSSMAG00000019144) #32	ENSSMAG00000019203 #33	kdm6bb (ENSSMAG00000019216) #34	tmem88a (ENSSMAG00000019282) #35	pcolcea (ENSSMAG00000019284) #36	vamp2 (ENSSMAG00000033547) #37	ENSSMAG00000019304
Tongue sole	MODERN SPECIES	10	irf1 (ENSCSEG00000011923)	slc22a4 (ENSCSEG00000011904)	ENSCSEG00000011898	ENSCSEG00000011822	slc22a21 (ENSCSEG00000011683)	ENSCSEG00000011645 #11	ENSCSEG00000011612 #12	lhx1b (ENSCSEG00000011601) #13	acaca (ENSCSEG00000011442) #14	ENSCSEG00000011423 #16	ppm1db (ENSCSEG00000011407) #17	ROBO1 (ENSCSEG00000011320) #18	ROBO2 (ENSCSEG00000011288) #19	PCDH1 (ENSCSEG00000011244) #20	ENSCSEG00000011211 #21	ENSCSEG00000011203 #22	ENSCSEG00000011200 #23	PCDHAC2 (ENSCSEG00000011194) #24	HRH2 (ENSCSEG00000011190) #27	npm1a (ENSCSEG00000011165) #29	cldn7b (ENSCSEG00000011159) #30	ENSCSEG00000011150 #31	nlgn2b (ENSCSEG00000011119) #32	kdm6bb (ENSCSEG00000011085) #34	ENSCSEG00000011072	tmem88a (ENSCSEG00000011069) #35	pcolcea (ENSCSEG00000011063) #36	vamp2 (ENSCSEG00000011053) #37	mpp1 (ENSCSEG00000011026)	TMLHE (ENSCSEG00000011005)	ENSCSEG00000010984
Eupercaria	ANCESTRAL SPECIES	17	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Tetraodontidae	ANCESTRAL SPECIES	6	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Fugu	MODERN SPECIES	6	msi2a (ENSTRUG00000021248)	OMG (ENSTRUG00000023075)	KSR1 (ENSTRUG00000011530) #7	VEZF1 (ENSTRUG00000011480) #8	ENSTRUG00000025896 #9	ENSTRUG00000010843 #11	ENSTRUG00000010496 #12	lhx1b (ENSTRUG00000010398) #13	acaca (ENSTRUG00000010043) #14	tbx2a (ENSTRUG00000009981) #16	ppm1db (ENSTRUG00000009943) #17	ENSTRUG00000031147 #18	ROBO2 (ENSTRUG00000027553) #19	ENSTRUG00000022748	PCDH1 (ENSTRUG00000008240) #20	ENSTRUG00000007848 #22	ENSTRUG00000031769 #23	PCDHAC2 (ENSTRUG00000019863) #24	ENSTRUG00000027523 #26	HRH2 (ENSTRUG00000007773) #27	kcnip1b (ENSTRUG00000007648) #28	npm1a (ENSTRUG00000024003) #29	cldn7b (ENSTRUG00000022766) #30	FGF11 (ENSTRUG00000007364) #31	ENSTRUG00000025551	nlgn2a (ENSTRUG00000007038) #32	ENSTRUG00000024116 #33	kdm6bb (ENSTRUG00000022289) #34	tmem88a (ENSTRUG00000020844) #35	pcolcea (ENSTRUG00000006387) #36	mpp1 (ENSTRUG00000006002)
Eupecaria_A	ANCESTRAL SPECIES	17	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Ballan wrasse	MODERN SPECIES	30	ENSLBEG00000006983	msi2a (ENSLBEG00000007061)	ENSLBEG00000007147	KSR1 (ENSLBEG00000007192) #7	ENSLBEG00000007320 #8	ENSLBEG00000007352 #11	ENSLBEG00000007485 #12	lhx1b (ENSLBEG00000007536) #13	acaca (ENSLBEG00000007593) #14	tbx2a (ENSLBEG00000007793) #16	ppm1db (ENSLBEG00000008035) #17	ROBO1 (ENSLBEG00000008067) #18	ENSLBEG00000008142 #19	ENSLBEG00000008201	PCDH1 (ENSLBEG00000008214) #20	ENSLBEG00000008332 #22	ENSLBEG00000008665 #23	PCDHAC2 (ENSLBEG00000008679) #24	HRH2 (ENSLBEG00000008690) #27	kcnip1b (ENSLBEG00000008764) #28	npm1a (ENSLBEG00000008793) #29	ENSLBEG00000008814	FGF11 (ENSLBEG00000008825) #31	ENSLBEG00000008856 #32
Eupecaria_B	ANCESTRAL SPECIES	17	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Perciformes	ANCESTRAL SPECIES	25	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744	ENSGT00530000063582.a
Cottioidei	ANCESTRAL SPECIES	10	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000166502	ENSGT00940000156455	ENSGT00940000159451	ENSGT01050000244864.B.a.g.a.a.a	ENSGT01030000235048
Lumpfish	MODERN SPECIES	5	ENSCLMG00005023113	msi2a (ENSCLMG00005023110)	ENSCLMG00005023108	KSR1 (ENSCLMG00005023107) #7	VEZF1 (ENSCLMG00005023104) #8	ENSCLMG00005023103 #9	ENSCLMG00005023101 #11	SEZ6 (ENSCLMG00005023100) #12	lhx1b (ENSCLMG00005023099) #13	acaca (ENSCLMG00005020773) #14	tbx2a (ENSCLMG00005020546) #16	ENSCLMG00005020545 #17	ENSCLMG00005020544 #18	ENSCLMG00005020542 #19	PCDH1 (ENSCLMG00005020539) #20	ENSCLMG00005020537 #22	ENSCLMG00005020536 #25	HRH2 (ENSCLMG00005020535) #27	kcnip1b (ENSCLMG00005020533) #28	npm1a (ENSCLMG00005020532) #29	ENSCLMG00005020531	FGF11 (ENSCLMG00005020530) #31	nlgn2b (ENSCLMG00005020529) #32	ENSCLMG00005020528 #33	ENSCLMG00005020527 #34	glra4b (ENSCLMG00005020526)	aifm1 (ENSCLMG00005019575)	tbc1d8b (ENSCLMG00005019549)	gja2 (ENSCLMG00005019548)	ENSCLMG00005019547	gjb1a (ENSCLMG00005019546)
Stickleback	MODERN SPECIES	7	tmem88a (ENSGACG00000020299) #35	ENSGACG00000020300	msi2a (ENSGACG00000020301)	MSI2 (ENSGACG00000020302)	KSR1 (ENSGACG00000020303) #7	VEZF1 (ENSGACG00000020304) #8	ENSGACG00000020305 #11	SEZ6 (ENSGACG00000020306) #12	lhx1b (ENSGACG00000020307) #13	acaca (ENSGACG00000020308) #14	tbx2a (ENSGACG00000020309) #16	ppm1db (ENSGACG00000020310) #17	ROBO1 (ENSGACG00000020311) #18	ROBO2 (ENSGACG00000020312) #19	PCDH1 (ENSGACG00000020313) #20	ENSGACG00000020314 #22	PCDHAC2 (ENSGACG00000020315) #24	ENSGACG00000020316 #26	HRH2 (ENSGACG00000020317) #27	kcnip1b (ENSGACG00000020318) #28	npm1a (ENSGACG00000020319) #29	cldn7b (ENSGACG00000020320) #30	ENSGACG00000020321 #31	nlgn2b (ENSGACG00000020322) #32	ENSGACG00000020323 #33	ENSGACG00000020324	KDM6B (ENSGACG00000020325) #34	glra4b (ENSGACG00000020326)	aifm1 (ENSGACG00000020327)	tbc1d8b (ENSGACG00000020328)	gja2 (ENSGACG00000020329)
Perciformes_a	ANCESTRAL SPECIES	34	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744	ENSGT00530000063582.a
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	37	msi2a (ENSSLUG00000021428)	ENSSLUG00000021406	KSR1 (ENSSLUG00000021397) #7	VEZF1 (ENSSLUG00000021389) #8	ENSSLUG00000021387 #9	ENSSLUG00000015853 #11	SEZ6 (ENSSLUG00000014103) #12	lhx1b (ENSSLUG00000014024) #13	acaca (ENSSLUG00000006714) #14	tbx2a (ENSSLUG00000006180) #16	ppm1db (ENSSLUG00000006171) #17	ENSSLUG00000006166	ROBO1 (ENSSLUG00000006087) #18	ROBO2 (ENSSLUG00000006052) #19	PCDH1 (ENSSLUG00000005983) #20	ENSSLUG00000005967 #22	ENSSLUG00000005964	ENSSLUG00000005958 #22	PCDHAC2 (ENSSLUG00000005950) #24	HRH2 (ENSSLUG00000005947) #27	kcnip1b (ENSSLUG00000005923) #28	npm1a (ENSSLUG00000005907) #29	cldn7b (ENSSLUG00000005892) #30	FGF11 (ENSSLUG00000005866) #31	nlgn2b (ENSSLUG00000005721) #32	ENSSLUG00000005695 #33	kdm6bb (ENSSLUG00000005672) #34	tmem88a (ENSSLUG00000005664) #35	pcolcea (ENSSLUG00000005533) #36	vamp2 (ENSSLUG00000005499) #37	mpp1 (ENSSLUG00000005351)
Pike perch	MODERN SPECIES	37	KSR1 (ENSSLUG00000021397) #7	VEZF1 (ENSSLUG00000021389) #8	ENSSLUG00000021387 #9	ENSSLUG00000015853 #11	SEZ6 (ENSSLUG00000014103) #12	lhx1b (ENSSLUG00000014024) #13	acaca (ENSSLUG00000006714) #14	tbx2a (ENSSLUG00000006180) #16	ppm1db (ENSSLUG00000006171) #17	ENSSLUG00000006166	ROBO1 (ENSSLUG00000006087) #18	ROBO2 (ENSSLUG00000006052) #19	PCDH1 (ENSSLUG00000005983) #20	ENSSLUG00000005967 #22	ENSSLUG00000005964	ENSSLUG00000005958 #22	PCDHAC2 (ENSSLUG00000005950) #24	HRH2 (ENSSLUG00000005947) #27	kcnip1b (ENSSLUG00000005923) #28	npm1a (ENSSLUG00000005907) #29	cldn7b (ENSSLUG00000005892) #30	FGF11 (ENSSLUG00000005866) #31	nlgn2b (ENSSLUG00000005721) #32	ENSSLUG00000005695 #33	kdm6bb (ENSSLUG00000005672) #34	tmem88a (ENSSLUG00000005664) #35	pcolcea (ENSSLUG00000005533) #36	vamp2 (ENSSLUG00000005499) #37	mpp1 (ENSSLUG00000005351)
Eupecaria_C	ANCESTRAL SPECIES	15	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
Gilthead seabream	MODERN SPECIES	4	ENSSAUG00010011601	msi2a (ENSSAUG00010011567)	ENSSAUG00010011563	KSR1 (ENSSAUG00010011088) #7	VEZF1 (ENSSAUG00010011083) #8	ENSSAUG00010011081 ##9	ENSSAUG00010009559 #11	SEZ6 (ENSSAUG00010009150) #12	lhx1b (ENSSAUG00010009136) #13	acaca (ENSSAUG00010006091) #14	tbx2a (ENSSAUG00010005995) #16	ppm1db (ENSSAUG00010005994) #17	ENSSAUG00010005660 #18	ROBO2 (ENSSAUG00010002766) #19	PCDH1 (ENSSAUG00010002681) #20	ENSSAUG00010002675 #22	ENSSAUG00010002670 #23	PCDHAC2 (ENSSAUG00010002660) #24	ENSSAUG00010002653 #26	HRH2 (ENSSAUG00010002644) #27	kcnip1b (ENSSAUG00010002585) #28	npm1a (ENSSAUG00010002570) #29	cldn7b (ENSSAUG00010002567) #30	ENSSAUG00010002562 #31	nlgn2b (ENSSAUG00010002448) #32	ENSSAUG00010002444 #33	kdm6bb (ENSSAUG00010002416) #34	tmem88a (ENSSAUG00010002395) #35	pcolcea (ENSSAUG00010002390) #36	vamp2 (ENSSAUG00010002387) #37	mpp1 (ENSSAUG00010002192)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	12	ENSGT00940000166439	ENSGT00940000155420.a.b	ENSGT00940000160802.b	ENSGT00940000156066.p #7	ENSGT00940000155932.b.b #8	ENSGT01090000260005.a.a.b.a.b #9	ENSGT00940000155768.A #11	ENSGT00940000156995.b #12	ENSGT00940000164085.d.a #13	ENSGT00940000156706.b #14	ENSGT00940000158439.n #16	ENSGT00940000155672.h #17	ENSGT00940000154477.jc.b #18	ENSGT00940000156324.f.b #19	ENSGT00940000155521.a.b #20	ENSGT00940000163777.b.a.b #22	ENSGT00940000164725.a.b.a #23	ENSGT00940000160554.a #24	ENSGT00390000017848 #26	ENSGT00940000158761.b #27	ENSGT00940000158048.d #28	ENSGT00940000166176 #29	ENSGT00940000160672 #30	ENSGT00940000158058.b #31	ENSGT00940000166430 #32	ENSGT01030000234592.A.b.b.a.b.a.b #33	ENSGT00940000160414.d #34	ENSGT00940000163776.a.b #35	ENSGT00940000159264.e #36	ENSGT00940000164382.a #37	ENSGT00940000158744
European seabass	MODERN SPECIES	4	ENSDLAG00005022002	ENSDLAG00005021910	ENSDLAG00005021900	ENSDLAG00005021494 #7	ENSDLAG00005021447 #8	ENSDLAG00005021441 #9	ENSDLAG00005019489 #11	ENSDLAG00005019086 #12	lhx1b (ENSDLAG00005019048) #13	acaca (ENSDLAG00005007628) #14	tbx2a (ENSDLAG00005007123) #16	ppm1db (ENSDLAG00005007115) #17	ENSDLAG00005006594 #18	ENSDLAG00005004407 #19	ENSDLAG00005004176 #20	ENSDLAG00005023047 #22	ENSDLAG00005023043 #23	ENSDLAG00005023039 #24	ENSDLAG00005023028 #26	ENSDLAG00005023027 #27	ENSDLAG00005023019 #28	ENSDLAG00005023017 #29	cldn7b (ENSDLAG00005023015) #30	ENSDLAG00005029193 #31	ENSDLAG00005028738	nlgn2b (ENSDLAG00005022969) #32	ENSDLAG00005022957 #33	kdm6bb (ENSDLAG00005022934) #34	tmem88a (ENSDLAG00005022931) #35	pcolcea (ENSDLAG00005022926) #36	vamp2 (ENSDLAG00005033206) #37
Large yellow croaker	MODERN SPECIES	493	ENSLCRG00005023384	msi2a (ENSLCRG00005023379)	ENSLCRG00005023375	KSR1 (ENSLCRG00005023356) #7	VEZF1 (ENSLCRG00005023353) #8	ENSLCRG00005023352 #9	ENSLCRG00005023324 #11	SEZ6 (ENSLCRG00005023316) #12	lhx1b (ENSLCRG00005023312) #13	acaca (ENSLCRG00005021121) #14	tbx2a (ENSLCRG00005021051) #16	ppm1db (ENSLCRG00005021049) #17	ROBO1 (ENSLCRG00005021034) #18	ROBO2 (ENSLCRG00005020848) #19	PCDH1 (ENSLCRG00005020838) #20	ENSLCRG00005020837 #22	ENSLCRG00005020836 #23	PCDHAC2 (ENSLCRG00005020835) #24	ENSLCRG00005020834 #26	HRH2 (ENSLCRG00005020833) #27	kcnip1b (ENSLCRG00005020832) #28	npm1a (ENSLCRG00005020831) #29	cldn7b (ENSLCRG00005020830) #30	FGF11 (ENSLCRG00005020829) #31	nlgn2b (ENSLCRG00005020797) #32	ENSLCRG00005020791 #33	kdm6bb (ENSLCRG00005020788) #34	tmem88a (ENSLCRG00005020787) #35	pcolcea (ENSLCRG00005020784) #36	vamp2 (ENSLCRG00005020783) #37	mpp1 (ENSLCRG00005020596)