Euarchontoglires_A ANCESTRAL SPECIES 1 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00960000189374 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 ENSGT00940000157089.B Glires ANCESTRAL SPECIES 1 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00960000189374 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 ENSGT00940000157089.B Rodentia ANCESTRAL SPECIES 1 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00960000189374 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT01100000264486 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 Rodentia_B ANCESTRAL SPECIES 5 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00960000189374 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT01100000264486 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 Myomorpha ANCESTRAL SPECIES 4 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00960000189374 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 Muroidea ANCESTRAL SPECIES 2 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00960000189374 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 Muroidea_A ANCESTRAL SPECIES 2 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00960000189374 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 Cricetidae ANCESTRAL SPECIES 5 ENSGT00390000014065 #7 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 Cricetinae ANCESTRAL SPECIES 1 ENSGT00390000014065 #7 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 Chinese hamster chok1gshd MODERN SPECIES 188 Ptpmt1 (ENSCGRG00001012152) #7 Celf1 (ENSCGRG00001011274) #8 Rapsn (ENSCGRG00001009650) #9 Psmc3 (ENSCGRG00001005657) #10 Slc39a13 (ENSCGRG00001003447) #11 Spi1 (ENSCGRG00001009684) #12 Mybpc3 (ENSCGRG00001006702) #13 Madd (ENSCGRG00001024681) #14 Nr1h3 (ENSCGRG00001022656) #15 Acp2 (ENSCGRG00001022138) #16 Ddb2 (ENSCGRG00001012939) #17 Pacsin3 (ENSCGRG00001011840) #18 Arfgap2 (ENSCGRG00001010700) #19 Cstpp1 (ENSCGRG00001020042) #20 Lrp4 (ENSCGRG00001018783) #21 Ckap5 (ENSCGRG00001013368) #22 F2 (ENSCGRG00001023426) #23 Zfp408 (ENSCGRG00001023588) #24 Arhgap1 (ENSCGRG00001023260) #25 ENSCGRG00001022859 #26 Atg13 (ENSCGRG00001022112) #27 Harbi1 (ENSCGRG00001021313) #28 Ambra1 (ENSCGRG00001020313) #29 Chrm4 (ENSCGRG00001012019) #30 Mdk (ENSCGRG00001022566) #31 ENSCGRG00001011874 #32 Dgkz (ENSCGRG00001021082) #33 Creb3l1 (ENSCGRG00001011598) #34 Phf21a (ENSCGRG00001007974) #35 Large2 (ENSCGRG00001001247) #36 Pex16 (ENSCGRG00001024899) #37 Golden Hamster MODERN SPECIES 618 Rapsn (ENSMAUG00000008690) #9 Psmc3 (ENSMAUG00000007346) #10 ENSMAUG00000009110 #11 Spi1 (ENSMAUG00000008854) #12 Mybpc3 (ENSMAUG00000008229) #13 Madd (ENSMAUG00000009156) #14 Nr1h3 (ENSMAUG00000008657) #15 Acp2 (ENSMAUG00000007767) #16 Ddb2 (ENSMAUG00000010179) #17 Pacsin3 (ENSMAUG00000009572) #18 Arfgap2 (ENSMAUG00000009218) #19 ENSMAUG00000008870 ENSMAUG00000008742 Cstpp1 (ENSMAUG00000008635) #20 Lrp4 (ENSMAUG00000016435) #21 Ckap5 (ENSMAUG00000012944) #22 F2 (ENSMAUG00000009414) #23 Arhgap1 (ENSMAUG00000012048) #25 Atg13 (ENSMAUG00000011052) #27 Harbi1 (ENSMAUG00000012193) #28 Ambra1 (ENSMAUG00000008821) #29 Chrm4 (ENSMAUG00000007510) #30 Mdk (ENSMAUG00000006759) #31 Dgkz (ENSMAUG00000008433) #33 Creb3l1 (ENSMAUG00000003224) #34 Phf21a (ENSMAUG00000011351) #35 Large2 (ENSMAUG00000008548) #36 Pex16 (ENSMAUG00000011878) #37 Frey1 (ENSMAUG00000006630) Mapk8ip1 (ENSMAUG00000005802) Cry2 (ENSMAUG00000004486) Cricetidae_B ANCESTRAL SPECIES 34 ENSGT00390000014065 #7 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 ENSGT00940000157089.B Northern American deer mouse MODERN SPECIES 17 Kbtbd4 (ENSPEMG00000001992) Ptpmt1 (ENSPEMG00000030250) #7 Celf1 (ENSPEMG00000015644) #8 Rapsn (ENSPEMG00000016952) #9 Slc39a13 (ENSPEMG00000016290) #11 Spi1 (ENSPEMG00000009647) #12 Mybpc3 (ENSPEMG00000009479) #13 Madd (ENSPEMG00000001264) #14 Nr1h3 (ENSPEMG00000018824) #15 Acp2 (ENSPEMG00000011860) #16 Ddb2 (ENSPEMG00000012899) #17 Pacsin3 (ENSPEMG00000018424) #18 Arfgap2 (ENSPEMG00000009220) #19 Cstpp1 (ENSPEMG00000018931) #20 Lrp4 (ENSPEMG00000015598) #21 Ckap5 (ENSPEMG00000007231) #22 F2 (ENSPEMG00000018118) #23 Zfp408 (ENSPEMG00000016757) #24 Arhgap1 (ENSPEMG00000011370) #25 Atg13 (ENSPEMG00000017021) #27 Harbi1 (ENSPEMG00000013606) #28 ENSPEMG00000025318 Ambra1 (ENSPEMG00000005111) #29 Chrm4 (ENSPEMG00000028345) #30 Mdk (ENSPEMG00000014123) #31 Dgkz (ENSPEMG00000009628) #33 Creb3l1 (ENSPEMG00000019031) #34 Phf21a (ENSPEMG00000004446) #35 Large2 (ENSPEMG00000013026) #36 Pex16 (ENSPEMG00000008055) #37 Frey1 (ENSPEMG00000018435) Prairie vole MODERN SPECIES 81 Celf1 (ENSMOCG00000012633) #8 Rapsn (ENSMOCG00000012267) #9 Psmc3 (ENSMOCG00000001464) #10 ENSMOCG00000006097 #11 ENSMOCG00000008195 #11 Spi1 (ENSMOCG00000006114) #12 Mybpc3 (ENSMOCG00000008344) #13 Madd (ENSMOCG00000003278) #14 Nr1h3 (ENSMOCG00000010671) #15 Acp2 (ENSMOCG00000002882) #16 Ddb2 (ENSMOCG00000021291) #17 Pacsin3 (ENSMOCG00000022577) #18 Arfgap2 (ENSMOCG00000016700) #19 Cstpp1 (ENSMOCG00000006672) #20 Lrp4 (ENSMOCG00000005823) #21 Ckap5 (ENSMOCG00000022214) #22 F2 (ENSMOCG00000019585) #23 Arhgap1 (ENSMOCG00000008533) #25 Atg13 (ENSMOCG00000018209) #27 ENSMOCG00000007253 Ambra1 (ENSMOCG00000018792) #29 Chrm4 (ENSMOCG00000016103) #30 Mdk (ENSMOCG00000014474) #31 Dgkz (ENSMOCG00000000694) #33 Creb3l1 (ENSMOCG00000012802) #34 Phf21a (ENSMOCG00000018126) #35 Large2 (ENSMOCG00000004366) #36 Pex16 (ENSMOCG00000015385) #37 Frey1 (ENSMOCG00000012907) Mapk8ip1 (ENSMOCG00000007285) ENSMOCG00000001841 Murinae ANCESTRAL SPECIES 1 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00960000189374 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 Mus ANCESTRAL SPECIES 1 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00960000189374 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 Mus_A ANCESTRAL SPECIES ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00960000189374 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b.g #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 Mus_B ANCESTRAL SPECIES 1 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00960000189374 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b.g #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 Mouse MODERN SPECIES 11 Ptpmt1 (ENSMUSG00000063235) #7 Celf1 (ENSMUSG00000005506) #8 Rapsn (ENSMUSG00000002104) #9 Psmc3 (ENSMUSG00000002102) #10 Slc39a13 (ENSMUSG00000002105) #11 Spi1 (ENSMUSG00000002111) #12 Mybpc3 (ENSMUSG00000002100) #13 Madd (ENSMUSG00000040687) #14 Nr1h3 (ENSMUSG00000002108) #15 Acp2 (ENSMUSG00000002103) #16 Ddb2 (ENSMUSG00000002109) #17 Pacsin3 (ENSMUSG00000027257) #18 Arfgap2 (ENSMUSG00000027255) #19 Cstpp1 (ENSMUSG00000040591) #20 Lrp4 (ENSMUSG00000027253) #21 Ckap5 (ENSMUSG00000040549) #22 F2 (ENSMUSG00000027249) #23 Zfp408 (ENSMUSG00000075040) #24 Arhgap1 (ENSMUSG00000027247) #25 Atg13 (ENSMUSG00000027244) #27 Harbi1 (ENSMUSG00000027243) #28 Ambra1 (ENSMUSG00000040506) #29 Chrm4 (ENSMUSG00000040495) #30 Mdk (ENSMUSG00000027239) #31 Dgkz (ENSMUSG00000040479) #33 Creb3l1 (ENSMUSG00000027230) #34 Phf21a (ENSMUSG00000058318) #35 Large2 (ENSMUSG00000040434) #36 Pex16 (ENSMUSG00000027222) #37 Frey1 (ENSMUSG00000044916) Mapk8ip1 (ENSMUSG00000027223) Mus_C ANCESTRAL SPECIES ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00960000189374 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b.g #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 spretus MODERN SPECIES 11 Kbtbd4 (MGP_SPRETEiJ_G0024858) Celf1 (MGP_SPRETEiJ_G0024859) #8 Rapsn (MGP_SPRETEiJ_G0024860) #9 Psmc3 (MGP_SPRETEiJ_G0024861) #10 Slc39a13 (MGP_SPRETEiJ_G0024862) #11 Spi1 (MGP_SPRETEiJ_G0024863) #12 Mybpc3 (MGP_SPRETEiJ_G0024864) #13 Madd (MGP_SPRETEiJ_G0024865) #14 Nr1h3 (MGP_SPRETEiJ_G0024866) #15 Acp2 (MGP_SPRETEiJ_G0024867) #16 Ddb2 (MGP_SPRETEiJ_G0024868) #17 Pacsin3 (MGP_SPRETEiJ_G0024869) #18 Arfgap2 (MGP_SPRETEiJ_G0024870) #19 Cstpp1 (MGP_SPRETEiJ_G0024871) #20 Lrp4 (MGP_SPRETEiJ_G0024872) #21 Ckap5 (MGP_SPRETEiJ_G0024873) #22 F2 (MGP_SPRETEiJ_G0024874) #23 Zfp408 (MGP_SPRETEiJ_G0024875) #24 Arhgap1 (MGP_SPRETEiJ_G0024876) #25 Atg13 (MGP_SPRETEiJ_G0024877) #27 Harbi1 (MGP_SPRETEiJ_G0024878) #28 Ambra1 (MGP_SPRETEiJ_G0024879) #29 Chrm4 (MGP_SPRETEiJ_G0024880) #30 Mdk (MGP_SPRETEiJ_G0024881) #31 Dgkz (MGP_SPRETEiJ_G0024882) #33 MGP_SPRETEiJ_G0024883 #32 Creb3l1 (MGP_SPRETEiJ_G0024884) #34 Phf21a (MGP_SPRETEiJ_G0024885) #35 Large2 (MGP_SPRETEiJ_G0024886) #36 Pex16 (MGP_SPRETEiJ_G0024887) #37 Frey1 (MGP_SPRETEiJ_G0024888) Steppe mouse MODERN SPECIES 36 Rapsn (ENSMSIG00000027530) #9 Psmc3 (ENSMSIG00000027459) #10 Slc39a13 (ENSMSIG00000027429) #11 Spi1 (ENSMSIG00000027421) #12 Mybpc3 (ENSMSIG00000027308) #13 Madd (ENSMSIG00000021063) #14 Nr1h3 (ENSMSIG00000020950) #15 Acp2 (ENSMSIG00000020936) #16 Ddb2 (ENSMSIG00000020921) #17 Pacsin3 (ENSMSIG00000020892) #18 Arfgap2 (ENSMSIG00000020760) #19 ENSMSIG00000020727 #20 ENSMSIG00000020721 Lrp4 (ENSMSIG00000020667) #21 ENSMSIG00000020658 Ckap5 (ENSMSIG00000020211) #22 F2 (ENSMSIG00000020083) #23 Zfp408 (ENSMSIG00000020068) #24 Arhgap1 (ENSMSIG00000020000) #25 Atg13 (ENSMSIG00000019915) #27 Harbi1 (ENSMSIG00000019911) #28 Ambra1 (ENSMSIG00000019820) #29 Chrm4 (ENSMSIG00000019816) #30 Mdk (ENSMSIG00000019785) #31 ENSMSIG00000019782 #32 Dgkz (ENSMSIG00000019366) #33 Creb3l1 (ENSMSIG00000019325) #34 Phf21a (ENSMSIG00000018990) #35 Large2 (ENSMSIG00000018698) #36 Pex16 (ENSMSIG00000018650) #37 Frey1 (ENSMSIG00000018641) Ryukyu mouse MODERN SPECIES 11 Kbtbd4 (MGP_CAROLIEiJ_G0023948) Celf1 (MGP_CAROLIEiJ_G0023949) #8 Rapsn (MGP_CAROLIEiJ_G0023950) #9 Psmc3 (MGP_CAROLIEiJ_G0023951) #10 Slc39a13 (MGP_CAROLIEiJ_G0023952) #11 Spi1 (MGP_CAROLIEiJ_G0023953) #12 Mybpc3 (MGP_CAROLIEiJ_G0023954) #13 Nr1h3 (MGP_CAROLIEiJ_G0023955) #15 Acp2 (MGP_CAROLIEiJ_G0023956) #16 Ddb2 (MGP_CAROLIEiJ_G0023957) #17 Pacsin3 (MGP_CAROLIEiJ_G0023958) #18 Arfgap2 (MGP_CAROLIEiJ_G0023959) #19 Cstpp1 (MGP_CAROLIEiJ_G0023960) #20 MGP_CAROLIEiJ_G0023961 Lrp4 (MGP_CAROLIEiJ_G0023962) #21 Ckap5 (MGP_CAROLIEiJ_G0023963) #22 F2 (MGP_CAROLIEiJ_G0023964) #23 Zfp408 (MGP_CAROLIEiJ_G0023965) #24 Arhgap1 (MGP_CAROLIEiJ_G0023966) #25 Atg13 (MGP_CAROLIEiJ_G0023967) #27 Harbi1 (MGP_CAROLIEiJ_G0023968) #28 Ambra1 (MGP_CAROLIEiJ_G0023969) #29 Chrm4 (MGP_CAROLIEiJ_G0023970) #30 Mdk (MGP_CAROLIEiJ_G0023971) #31 Dgkz (MGP_CAROLIEiJ_G0023972) #33 MGP_CAROLIEiJ_G0023973 #32 Creb3l1 (MGP_CAROLIEiJ_G0023974) #34 Phf21a (MGP_CAROLIEiJ_G0023975) #35 Large2 (MGP_CAROLIEiJ_G0023976) #36 Pex16 (MGP_CAROLIEiJ_G0023977) #37 Frey1 (MGP_CAROLIEiJ_G0023978) Shrew mouse MODERN SPECIES 16 Celf1 (MGP_PahariEiJ_G0025385) #8 Rapsn (MGP_PahariEiJ_G0025386) #9 Psmc3 (MGP_PahariEiJ_G0025387) #10 Slc39a13 (MGP_PahariEiJ_G0025388) #11 Spi1 (MGP_PahariEiJ_G0025389) #12 Mybpc3 (MGP_PahariEiJ_G0025390) #13 Madd (MGP_PahariEiJ_G0025391) #14 Nr1h3 (MGP_PahariEiJ_G0025392) #15 Acp2 (MGP_PahariEiJ_G0025393) #16 Ddb2 (MGP_PahariEiJ_G0025394) #17 Pacsin3 (MGP_PahariEiJ_G0025395) #18 Arfgap2 (MGP_PahariEiJ_G0025396) #19 Cstpp1 (MGP_PahariEiJ_G0025397) #20 MGP_PahariEiJ_G0025398 Lrp4 (MGP_PahariEiJ_G0025399) #21 Ckap5 (MGP_PahariEiJ_G0025400) #22 F2 (MGP_PahariEiJ_G0025401) #23 Zfp408 (MGP_PahariEiJ_G0025402) #24 Arhgap1 (MGP_PahariEiJ_G0025403) #25 Atg13 (MGP_PahariEiJ_G0025404) #27 Harbi1 (MGP_PahariEiJ_G0025405) #28 Ambra1 (MGP_PahariEiJ_G0025406) #29 Chrm4 (MGP_PahariEiJ_G0025407) #30 Mdk (MGP_PahariEiJ_G0025408) #31 Dgkz (MGP_PahariEiJ_G0025409) #33 MGP_PahariEiJ_G0025410 #32 Creb3l1 (MGP_PahariEiJ_G0025411) #34 Phf21a (MGP_PahariEiJ_G0025412) #35 Large2 (MGP_PahariEiJ_G0025413) #36 Pex16 (MGP_PahariEiJ_G0025414) #37 Frey1 (MGP_PahariEiJ_G0025415) Rat MODERN SPECIES 13 Ptpmt1 (ENSRNOG00000009723) #7 Celf1 (ENSRNOG00000010379) #8 Rapsn (ENSRNOG00000011208) #9 Psmc3 (ENSRNOG00000011414) #10 Slc39a13 (ENSRNOG00000011981) #11 Spi1 (ENSRNOG00000012172) #12 Mybpc3 (ENSRNOG00000012307) #13 Madd (ENSRNOG00000012568) #14 Nr1h3 (ENSRNOG00000013172) #15 Acp2 (ENSRNOG00000013594) #16 Ddb2 (ENSRNOG00000014071) #17 Pacsin3 (ENSRNOG00000014204) #18 Arfgap2 (ENSRNOG00000014429) #19 Cstpp1 (ENSRNOG00000014798) #20 Lrp4 (ENSRNOG00000015285) #21 Ckap5 (ENSRNOG00000016067) #22 F2 (ENSRNOG00000016325) #23 ENSRNOG00000070459 #24 Arhgap1 (ENSRNOG00000016610) #25 Atg13 (ENSRNOG00000016984) #27 Ambra1 (ENSRNOG00000017422) #29 Chrm4 (ENSRNOG00000017556) #30 Mdk (ENSRNOG00000017560) #31 Dgkz (ENSRNOG00000017737) #33 Creb3l1 (ENSRNOG00000005413) #34 Phf21a (ENSRNOG00000006063) #35 Large2 (ENSRNOG00000006353) #36 Pex16 (ENSRNOG00000006539) #37 Frey1 (ENSRNOG00000006884) Mapk8ip1 (ENSRNOG00000058478) Cry2 (ENSRNOG00000007478) Upper Galilee mountains blind mole rat MODERN SPECIES 1238 ENSNGAG00000018260 Celf1 (ENSNGAG00000017390) #8 Rapsn (ENSNGAG00000007295) #9 Psmc3 (ENSNGAG00000017843) #10 Slc39a13 (ENSNGAG00000017536) #11 Spi1 (ENSNGAG00000010713) #12 Mybpc3 (ENSNGAG00000000260) #13 Madd (ENSNGAG00000017768) #14 Nr1h3 (ENSNGAG00000015402) #15 Acp2 (ENSNGAG00000007455) #16 Ddb2 (ENSNGAG00000017336) #17 Pacsin3 (ENSNGAG00000014205) #18 Arfgap2 (ENSNGAG00000009124) #19 Cstpp1 (ENSNGAG00000000171) #20 Lrp4 (ENSNGAG00000020436) #21 Ckap5 (ENSNGAG00000001579) #22 F2 (ENSNGAG00000010351) #23 Zfp408 (ENSNGAG00000000309) #24 Arhgap1 (ENSNGAG00000013969) #25 Atg13 (ENSNGAG00000015785) #27 ENSNGAG00000012504 Lesser Egyptian jerboa MODERN SPECIES 62 Kbtbd4 (ENSJJAG00000020543) Celf1 (ENSJJAG00000020280) #8 Rapsn (ENSJJAG00000020297) #9 Psmc3 (ENSJJAG00000021354) #10 Slc39a13 (ENSJJAG00000007370) #11 Spi1 (ENSJJAG00000019221) #12 Mybpc3 (ENSJJAG00000018706) #13 Madd (ENSJJAG00000015606) #14 Nr1h3 (ENSJJAG00000020697) #15 Acp2 (ENSJJAG00000019515) #16 Ddb2 (ENSJJAG00000016552) #17 Pacsin3 (ENSJJAG00000023252) #18 Arfgap2 (ENSJJAG00000003129) #19 Cstpp1 (ENSJJAG00000008330) #20 Lrp4 (ENSJJAG00000014851) #21 Ckap5 (ENSJJAG00000023265) #22 F2 (ENSJJAG00000005619) #23 Zfp408 (ENSJJAG00000015381) #24 Arhgap1 (ENSJJAG00000022610) #25 Atg13 (ENSJJAG00000024173) #27 ENSJJAG00000015195 ENSJJAG00000016975 Ambra1 (ENSJJAG00000004138) #29 Chrm4 (ENSJJAG00000010466) #30 Mdk (ENSJJAG00000023305) #31 Dgkz (ENSJJAG00000003197) #33 Creb3l1 (ENSJJAG00000014152) #34 Phf21a (ENSJJAG00000016994) #35 Large2 (ENSJJAG00000015799) #36 Pex16 (ENSJJAG00000022973) #37 Frey1 (ENSJJAG00000020049) Kangaroo rat MODERN SPECIES 444 Ptpmt1 (ENSDORG00000015591) #7 Celf1 (ENSDORG00000013721) #8 Rapsn (ENSDORG00000000757) #9 Psmc3 (ENSDORG00000000756) #10 Slc39a13 (ENSDORG00000000753) #11 Spi1 (ENSDORG00000007758) #12 Mybpc3 (ENSDORG00000007751) #13 Madd (ENSDORG00000007749) #14 Nr1h3 (ENSDORG00000007747) #15 Acp2 (ENSDORG00000007743) #16 Ddb2 (ENSDORG00000007741) #17 ENSDORG00000013060 #18 Arfgap2 (ENSDORG00000013057) #19 Cstpp1 (ENSDORG00000013052) #20 Lrp4 (ENSDORG00000001785) #21 Ckap5 (ENSDORG00000011373) #22 F2 (ENSDORG00000029579) #23 Zfp408 (ENSDORG00000000387) #24 Arhgap1 (ENSDORG00000000385) #25 Atg13 (ENSDORG00000000382) #27 ENSDORG00000028941 Ambra1 (ENSDORG00000008382) #29 Chrm4 (ENSDORG00000024984) #30 Mdk (ENSDORG00000029447) #31 Dgkz (ENSDORG00000008377) #33 ENSDORG00000028371 #32 Creb3l1 (ENSDORG00000023541) #34 ENSDORG00000025559 Phf21a (ENSDORG00000015508) #35 Large2 (ENSDORG00000015507) #36 Pex16 (ENSDORG00000015504) #37 Rodentia_A ANCESTRAL SPECIES 1 ENSGT00390000014065 #7 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 Sciuridae ANCESTRAL SPECIES 2 ENSGT00390000014065 #7 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 ENSGT00940000157089.B Marmotini ANCESTRAL SPECIES 22 ENSGT00390000014065 #7 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 ENSGT00940000157089.B Alpin marmot MODERN SPECIES 3 ENSMMMG00000015652 CELF1 (ENSMMMG00000015346) #8 RAPSN (ENSMMMG00000015294) #9 PSMC3 (ENSMMMG00000015270) #10 SLC39A13 (ENSMMMG00000015224) #11 SPI1 (ENSMMMG00000015212) #12 MYBPC3 (ENSMMMG00000015189) #13 MADD (ENSMMMG00000014606) #14 NR1H3 (ENSMMMG00000014541) #15 ACP2 (ENSMMMG00000014527) #16 DDB2 (ENSMMMG00000014518) #17 PACSIN3 (ENSMMMG00000014498) #18 ARFGAP2 (ENSMMMG00000014424) #19 CSTPP1 (ENSMMMG00000014382) #20 LRP4 (ENSMMMG00000014335) #21 CKAP5 (ENSMMMG00000013993) #22 F2 (ENSMMMG00000013961) #23 ZNF408 (ENSMMMG00000013944) #24 ARHGAP1 (ENSMMMG00000013934) #25 ATG13 (ENSMMMG00000013875) #27 HARBI1 (ENSMMMG00000013860) #28 AMBRA1 (ENSMMMG00000013284) #29 CHRM4 (ENSMMMG00000013278) #30 MDK (ENSMMMG00000013259) #31 DGKZ (ENSMMMG00000013155) #33 CREB3L1 (ENSMMMG00000013137) #34 PHF21A (ENSMMMG00000012404) #35 LARGE2 (ENSMMMG00000012317) #36 PEX16 (ENSMMMG00000012310) #37 FREY1 (ENSMMMG00000012302) MAPK8IP1 (ENSMMMG00000011982) Marmotini_b ANCESTRAL SPECIES 23 ENSGT00390000014065 #7 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 ENSGT00940000157089.B Arctic ground squirrel MODERN SPECIES 208 CELF1 (ENSUPAG00010013973) #8 RAPSN (ENSUPAG00010013926) #9 PSMC3 (ENSUPAG00010013908) #10 SLC39A13 (ENSUPAG00010013855) #11 SPI1 (ENSUPAG00010013850) #12 ENSUPAG00010013841 MYBPC3 (ENSUPAG00010013812) #13 MADD (ENSUPAG00010011229) #14 NR1H3 (ENSUPAG00010011188) #15 ACP2 (ENSUPAG00010011162) #16 DDB2 (ENSUPAG00010011149) #17 PACSIN3 (ENSUPAG00010011141) #18 ARFGAP2 (ENSUPAG00010011117) #19 CSTPP1 (ENSUPAG00010011093) #20 LRP4 (ENSUPAG00010011049) #21 CKAP5 (ENSUPAG00010010730) #22 F2 (ENSUPAG00010010714) #23 ZNF408 (ENSUPAG00010010704) #24 ARHGAP1 (ENSUPAG00010010696) #25 ATG13 (ENSUPAG00010010621) #27 HARBI1 (ENSUPAG00010010611) #28 AMBRA1 (ENSUPAG00010010430) #29 CHRM4 (ENSUPAG00010010417) #30 MDK (ENSUPAG00010010379) #31 DGKZ (ENSUPAG00010010211) #33 CREB3L1 (ENSUPAG00010010194) #34 PHF21A (ENSUPAG00010009105) #35 LARGE2 (ENSUPAG00010008955) #36 PEX16 (ENSUPAG00010008926) #37 FREY1 (ENSUPAG00010008915) MAPK8IP1 (ENSUPAG00010008856) Squirrel MODERN SPECIES 162 PTPMT1 (ENSSTOG00000019770) #7 CELF1 (ENSSTOG00000000613) #8 RAPSN (ENSSTOG00000011047) #9 PSMC3 (ENSSTOG00000011038) #10 SLC39A13 (ENSSTOG00000027722) #11 SPI1 (ENSSTOG00000022735) #12 MYBPC3 (ENSSTOG00000026473) #13 MADD (ENSSTOG00000007626) #14 NR1H3 (ENSSTOG00000007611) #15 ACP2 (ENSSTOG00000007586) #16 DDB2 (ENSSTOG00000007571) #17 PACSIN3 (ENSSTOG00000007547) #18 ARFGAP2 (ENSSTOG00000007524) #19 CSTPP1 (ENSSTOG00000007512) #20 LRP4 (ENSSTOG00000005236) #21 CKAP5 (ENSSTOG00000005158) #22 F2 (ENSSTOG00000005130) #23 ZNF408 (ENSSTOG00000005114) #24 ARHGAP1 (ENSSTOG00000026557) #25 ATG13 (ENSSTOG00000005077) #27 HARBI1 (ENSSTOG00000005072) #28 AMBRA1 (ENSSTOG00000019411) #29 CHRM4 (ENSSTOG00000022455) #30 MDK (ENSSTOG00000027636) #31 DGKZ (ENSSTOG00000012704) #33 CREB3L1 (ENSSTOG00000012697) #34 PHF21A (ENSSTOG00000011552) #35 LARGE2 (ENSSTOG00000011545) #36 PEX16 (ENSSTOG00000011534) #37 MAPK8IP1 (ENSSTOG00000027362) FREY1 (ENSSTOG00000027622) Eurasian red squirrel MODERN SPECIES 2 ENSSVLG00005009993 #10 ENSSVLG00005010167 #11 ENSSVLG00005010225 #10 ENSSVLG00005010302 #11 SPI1 (ENSSVLG00005010597) #12 MYBPC3 (ENSSVLG00005010729) #13 MADD (ENSSVLG00005011762) #14 ENSSVLG00005012055 NR1H3 (ENSSVLG00005012159) #15 ACP2 (ENSSVLG00005012397) #16 DDB2 (ENSSVLG00005012634) #17 PACSIN3 (ENSSVLG00005013010) #18 ARFGAP2 (ENSSVLG00005013354) #19 CSTPP1 (ENSSVLG00005013495) #20 LRP4 (ENSSVLG00005013702) #21 CKAP5 (ENSSVLG00005013939) #22 F2 (ENSSVLG00005014116) #23 ARHGAP1 (ENSSVLG00005014685) #25 ENSSVLG00005014869 #27 HARBI1 (ENSSVLG00005015510) #28 AMBRA1 (ENSSVLG00005015569) #29 CHRM4 (ENSSVLG00005015740) #30 MDK (ENSSVLG00005015782) #31 DGKZ (ENSSVLG00005015887) #33 ENSSVLG00005015926 CREB3L1 (ENSSVLG00005015955) #34 PHF21A (ENSSVLG00005016012) #35 LARGE2 (ENSSVLG00005016132) #36 PEX16 (ENSSVLG00005016392) #37 FREY1 (ENSSVLG00005016461) MAPK8IP1 (ENSSVLG00005016511) Hystricomorpha ANCESTRAL SPECIES 16 ENSGT00390000014065 #7 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 ENSGT00940000157089.B Hystricomorpha_a ANCESTRAL SPECIES 12 ENSGT00390000014065 #7 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 ENSGT00940000157089.B Hystricomorpha_b ANCESTRAL SPECIES 10 ENSGT00940000158775 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000159754 #12 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000154234.b #23 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00390000007640.b #31 ENSGT00940000156152 #33 ENSGT00860000136066 #32 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00390000018235 ENSGT00940000157089.B Long-tailed chinchilla MODERN SPECIES 129 KBTBD4 (ENSCLAG00000016255) CELF1 (ENSCLAG00000011791) #8 RAPSN (ENSCLAG00000015497) #9 PSMC3 (ENSCLAG00000013916) #10 SLC39A13 (ENSCLAG00000014480) #11 SPI1 (ENSCLAG00000017201) #12 MYBPC3 (ENSCLAG00000015418) #13 MADD (ENSCLAG00000012503) #14 NR1H3 (ENSCLAG00000013563) #15 ACP2 (ENSCLAG00000014608) #16 DDB2 (ENSCLAG00000016473) #17 ENSCLAG00000012709 #18 ARFGAP2 (ENSCLAG00000016467) #19 CSTPP1 (ENSCLAG00000014110) #20 LRP4 (ENSCLAG00000016159) #21 CKAP5 (ENSCLAG00000015801) #22 F2 (ENSCLAG00000015618) #23 ARHGAP1 (ENSCLAG00000013542) #25 ATG13 (ENSCLAG00000015328) #27 HARBI1 (ENSCLAG00000013578) #28 AMBRA1 (ENSCLAG00000015156) #29 CHRM4 (ENSCLAG00000013251) #30 MDK (ENSCLAG00000014462) #31 DGKZ (ENSCLAG00000016057) #33 ENSCLAG00000014194 #32 CREB3L1 (ENSCLAG00000013609) #34 PHF21A (ENSCLAG00000016632) #35 LARGE2 (ENSCLAG00000014846) #36 PEX16 (ENSCLAG00000013695) #37 MAPK8IP1 (ENSCLAG00000014552) ENSCLAG00000014881 Degu MODERN SPECIES 59 NDUFS3 (ENSODEG00000015948) KBTBD4 (ENSODEG00000015830) CELF1 (ENSODEG00000015204) #8 RAPSN (ENSODEG00000015194) #9 ENSODEG00000016550 #10 SLC39A13 (ENSODEG00000015895) #11 SPI1 (ENSODEG00000015369) #12 MYBPC3 (ENSODEG00000016030) #13 MADD (ENSODEG00000017645) #14 NR1H3 (ENSODEG00000016180) #15 ACP2 (ENSODEG00000015528) #16 ENSODEG00000015965 #18 ENSODEG00000016456 #19 CSTPP1 (ENSODEG00000016656) #20 LRP4 (ENSODEG00000015720) #21 CKAP5 (ENSODEG00000016409) #22 F2 (ENSODEG00000016157) #23 ARHGAP1 (ENSODEG00000016156) #25 ATG13 (ENSODEG00000017294) #27 ENSODEG00000016339 AMBRA1 (ENSODEG00000016633) #29 CHRM4 (ENSODEG00000020352) #30 MDK (ENSODEG00000015931) #31 DGKZ (ENSODEG00000016309) #33 ENSODEG00000016420 #33 ENSODEG00000016039 #32 CREB3L1 (ENSODEG00000016017) #34 ENSODEG00000016348 ENSODEG00000016543 PHF21A (ENSODEG00000017531) #35 LARGE2 (ENSODEG00000016208) #36 Guinea pig MODERN SPECIES 72 PTPMT1 (ENSCPOG00000031147) #7 CELF1 (ENSCPOG00000036381) #8 RAPSN (ENSCPOG00000015456) #9 PSMC3 (ENSCPOG00000008176) #10 SLC39A13 (ENSCPOG00000008169) #11 SPI1 (ENSCPOG00000022138) #12 MYBPC3 (ENSCPOG00000013368) #13 MADD (ENSCPOG00000013364) #14 NR1H3 (ENSCPOG00000013362) #15 ACP2 (ENSCPOG00000013359) #16 DDB2 (ENSCPOG00000013358) #17 PACSIN3 (ENSCPOG00000013356) #18 ARFGAP2 (ENSCPOG00000013352) #19 CSTPP1 (ENSCPOG00000020334) #20 LRP4 (ENSCPOG00000007072) #21 CKAP5 (ENSCPOG00000007054) #22 F2 (ENSCPOG00000026682) #23 ARHGAP1 (ENSCPOG00000013046) #25 ATG13 (ENSCPOG00000013042) #27 HARBI1 (ENSCPOG00000037304) #28 AMBRA1 (ENSCPOG00000007341) #29 CHRM4 (ENSCPOG00000020788) #30 MDK (ENSCPOG00000007340) #31 DGKZ (ENSCPOG00000009636) #33 CREB3L1 (ENSCPOG00000010073) #34 PHF21A (ENSCPOG00000001299) #35 LARGE2 (ENSCPOG00000033339) #36 PEX16 (ENSCPOG00000027497) #37 FREY1 (ENSCPOG00000032012) MAPK8IP1 (ENSCPOG00000001298) CRY2 (ENSCPOG00000001296) Lagomorpha ANCESTRAL SPECIES 4 ENSGT00940000158775 ENSGT00390000014065 #7 ENSGT00940000158970 #8 ENSGT00390000016785 #9 ENSGT01020000230346.E #10 ENSGT00940000157349 #11 ENSGT00940000157698.b #13 ENSGT00940000156718 #14 ENSGT00940000159068 #15 ENSGT00940000158446 #16 ENSGT00510000047881 #17 ENSGT00950000182973.b.a #18 ENSGT00940000155568 #19 ENSGT00390000012935 #20 ENSGT00940000158287 #21 ENSGT00390000014757 #22 ENSGT00940000164059 ENSGT00930000151062 #24 ENSGT00940000160630 #25 ENSGT00390000007055 #27 ENSGT00940000154348.c.b.a #28 ENSGT00390000016223 #29 ENSGT00940000160394.a #30 ENSGT00940000156152 #33 ENSGT00940000159848 #34 ENSGT00940000156124 #35 ENSGT00940000158758 #36 ENSGT00390000017790 #37 ENSGT00940000157089.B ENSGT00940000159073 ENSGT00390000013315 Rabbit MODERN SPECIES KBTBD4 (ENSOCUG00000006353) PTPMT1 (ENSOCUG00000021229) #7 CELF1 (ENSOCUG00000001311) #8 RAPSN (ENSOCUG00000008892) #9 PSMC3 (ENSOCUG00000026980) #10 SLC39A13 (ENSOCUG00000005557) #11 MYBPC3 (ENSOCUG00000002112) #13 MADD (ENSOCUG00000002099) #14 NR1H3 (ENSOCUG00000002095) #15 ACP2 (ENSOCUG00000013342) #16 DDB2 (ENSOCUG00000002076) #17 PACSIN3 (ENSOCUG00000027715) #18 ENSOCUG00000002073 #19 CSTPP1 (ENSOCUG00000002066) #20 LRP4 (ENSOCUG00000002052) #21 CKAP5 (ENSOCUG00000016200) #22 ZNF408 (ENSOCUG00000010953) #24 ARHGAP1 (ENSOCUG00000016160) #25 ATG13 (ENSOCUG00000016144) #27 HARBI1 (ENSOCUG00000016137) #28 AMBRA1 (ENSOCUG00000016117) #29 CHRM4 (ENSOCUG00000021064) #30 ENSOCUG00000024752 #33 CREB3L1 (ENSOCUG00000004418) #34 PHF21A (ENSOCUG00000001675) #35 LARGE2 (ENSOCUG00000001671) #36 PEX16 (ENSOCUG00000001670) #37 ENSOCUG00000023020 CRY2 (ENSOCUG00000025433) SLC35C1 (ENSOCUG00000015335) CHST1 (ENSOCUG00000006596) Pika MODERN SPECIES 3586 MYBPC3 (ENSOPRG00000009569) #13 MADD (ENSOPRG00000009509) #14 NR1H3 (ENSOPRG00000009497) #15 ACP2 (ENSOPRG00000009485) #16 DDB2 (ENSOPRG00000009468) #17 PACSIN3 (ENSOPRG00000009451) #18 ARFGAP2 (ENSOPRG00000009432) #19 CSTPP1 (ENSOPRG00000009417) #20 LRP4 (ENSOPRG00000009347) #21 CKAP5 (ENSOPRG00000009287) #22 ENSOPRG00000009249 ZNF408 (ENSOPRG00000009225) #24 ARHGAP1 (ENSOPRG00000009201) #25 ATG13 (ENSOPRG00000009172) #27 Tree shrew MODERN SPECIES 4018 CKAP5 (ENSTBEG00000003324) #22