Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000010711 #9	ENSGT00940000162223 #10	ENSGT00390000001017 #11	ENSGT00940000154557.c.a.d.a.b #12	ENSGT00940000154557.c.a.c #13	ENSGT00940000154557.c.a.d.a.a ##14	ENSGT00940000154557.c.a.d.b #14	ENSGT00950000182931.A #15	ENSGT00950000183117.a.b #16	ENSGT01030000234578.B.b #17	ENSGT00390000017353 #18	ENSGT00940000159669 #19	ENSGT00940000163100.b #20	ENSGT00940000160210 #21	ENSGT01050000248434	ENSGT00940000158688 #22	ENSGT00940000159534 #23	ENSGT00940000162710 #24	ENSGT00860000136224 #25	ENSGT00940000161331 #26	ENSGT00390000006247.tc #27	ENSGT00940000158411 #28	ENSGT00940000158161 #29	ENSGT00940000158860 #30	ENSGT00940000156542 #31	ENSGT00940000163477 #32	ENSGT00940000160669 #33	ENSGT00400000022095.b #34	ENSGT00860000136103 #35	ENSGT00950000182981.b.f.b #36	ENSGT00390000015805 #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000162223 #10	ENSGT00390000001017 #11	ENSGT00940000154557.c.a.d.a.b #12	ENSGT00940000154557.c.a.c #13	ENSGT00940000154557.c.a.d.a.a.c.a ##14	ENSGT00940000154557.c.a.d.a.a.d ##14	ENSGT00940000154557.c.a.d.b #14	ENSGT00950000182931.A #15	ENSGT00950000183117.a.b #16	ENSGT01030000234578.B.b #17	ENSGT00390000017353 #18	ENSGT00940000159669 #19	ENSGT00940000163100.b #20	ENSGT00940000160210 #21	ENSGT01050000248434	ENSGT00940000158688 #22	ENSGT00940000159534 #23	ENSGT00940000162710 #24	ENSGT00860000136224 #25	ENSGT00940000161331 #26	ENSGT00390000006247.tc #27	ENSGT00940000158411 #28	ENSGT00940000158161 #29	ENSGT00940000158860 #30	ENSGT00940000156542 #31	ENSGT00940000163477 #32	ENSGT00940000160669 #33	ENSGT00400000022095.b #34	ENSGT00860000136103 #35	ENSGT00950000182981.b.f.b #36	ENSGT00390000015805 #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00390000001958 #8	ENSGT00390000010711 #9	ENSGT00940000162223 #10	ENSGT00390000001017 #11	ENSGT00940000154557.c.a.d.a.b #12	ENSGT00940000154557.c.a.c #13	ENSGT00940000154557.c.a.d.b #14	ENSGT00950000182931.A #15	ENSGT00950000183117.a.b #16	ENSGT01030000234578.B.b #17	ENSGT00390000017353 #18	ENSGT00940000159669 #19	ENSGT00940000163100.b #20	ENSGT00940000160210 #21	ENSGT01050000248434	ENSGT00940000158688 #22	ENSGT00940000159534 #23	ENSGT00940000162710 #24	ENSGT00860000136224 #25	ENSGT00940000161331 #26	ENSGT00390000006247.tc #27	ENSGT00940000158411 #28	ENSGT00940000158161 #29	ENSGT00940000158860 #30	ENSGT00940000156542 #31	ENSGT00940000163477 #32	ENSGT00940000160669 #33	ENSGT00400000022095.b #34	ENSGT00860000136103 #35	ENSGT00950000182981.b.f.b #36	ENSGT00390000015805 #37
spretus	MODERN SPECIES	12	I830077J02Rik (MGP_SPRETEiJ_G0026428) #7	Atp5pb (MGP_SPRETEiJ_G0026429) #8	Wdr77 (MGP_SPRETEiJ_G0026430) #9	Ovgp1 (MGP_SPRETEiJ_G0026431) #10	Pifo (MGP_SPRETEiJ_G0026432) #11	Chil5 (MGP_SPRETEiJ_G0026433) #12	Chia1 (MGP_SPRETEiJ_G0026434) #13	Chil6 (MGP_SPRETEiJ_G0026436) #14	Dennd2d (MGP_SPRETEiJ_G0026437) #15	Cept1 (MGP_SPRETEiJ_G0026438) #16	Dram2 (MGP_SPRETEiJ_G0026439) #17	Lrif1 (MGP_SPRETEiJ_G0026440) #18	Cd53 (MGP_SPRETEiJ_G0026441) #19	Or11i1 (MGP_SPRETEiJ_G0026442) #20	Kcna3 (MGP_SPRETEiJ_G0026443) #21	Kcna2 (MGP_SPRETEiJ_G0026444) #22	Kcna10 (MGP_SPRETEiJ_G0026445) #23	Cym (MGP_SPRETEiJ_G0026446) #24	MGP_SPRETEiJ_G0026447 #25	Prok1 (MGP_SPRETEiJ_G0026448) #26	Lamtor5 (MGP_SPRETEiJ_G0026449) #27	Slc16a4 (MGP_SPRETEiJ_G0026450) #28	Rbm15 (MGP_SPRETEiJ_G0026451) #29	Kcnc4 (MGP_SPRETEiJ_G0026452) #30	Slc6a17 (MGP_SPRETEiJ_G0026453) #31	Ubl4b (MGP_SPRETEiJ_G0026454) #32	Alx3 (MGP_SPRETEiJ_G0026455) #33	Strip1 (MGP_SPRETEiJ_G0026456) #34	MGP_SPRETEiJ_G0026457 #35	Ahcyl1 (MGP_SPRETEiJ_G0026458) #36	Csf1 (MGP_SPRETEiJ_G0026459) #37
Steppe mouse	MODERN SPECIES	2741											Lrif1 (ENSMSIG00000032169) #18	Cd53 (ENSMSIG00000032167) #19	Kcna3 (ENSMSIG00000032166) #21	ENSMSIG00000032165	ENSMSIG00000032164	Kcna2 (ENSMSIG00000032163) #22	ENSMSIG00000032162	Kcna10 (ENSMSIG00000032161) #23	Cym (ENSMSIG00000032160) #24	ENSMSIG00000032159 #25	ENSMSIG00000032158 #26	ENSMSIG00000032157 #27	Slc16a4 (ENSMSIG00000032156) #28	Rbm15 (ENSMSIG00000032155) #29	Kcnc4 (ENSMSIG00000032153) #30	Slc6a17 (ENSMSIG00000032152) #31	ENSMSIG00000032151	Ubl4b (ENSMSIG00000032150) #32	Alx3 (ENSMSIG00000032148) #33	Strip1 (ENSMSIG00000032147) #34
Mouse	MODERN SPECIES	12	Wdr77 (ENSMUSG00000000561) #9	Ovgp1 (ENSMUSG00000074340) #10	Pifo (ENSMUSG00000010136) #11	Chil5 (ENSMUSG00000043873) #12	Chia1 (ENSMUSG00000062778) #13	Chil3 (ENSMUSG00000040809) ##14	Chil4 (ENSMUSG00000063779) ##14	Chil6 (ENSMUSG00000027902) #14	Dennd2d (ENSMUSG00000027901) #15	Cept1 (ENSMUSG00000040774) #16	Dram2 (ENSMUSG00000027900) #17	Lrif1 (ENSMUSG00000056260) #18	Cd53 (ENSMUSG00000040747) #19	Or11i1 (ENSMUSG00000043529) #20	Kcna3 (ENSMUSG00000047959) #21	Kcna2 (ENSMUSG00000040724) #22	Kcna10 (ENSMUSG00000042861) #23	Cym (ENSMUSG00000046213) #24	Prok1 (ENSMUSG00000070368) #26	Lamtor5 (ENSMUSG00000087260) #27	Slc16a4 (ENSMUSG00000027896) #28	Rbm15 (ENSMUSG00000048109) #29	Kcnc4 (ENSMUSG00000027895) #30	Slc6a17 (ENSMUSG00000027894) #31	Ubl4b (ENSMUSG00000055891) #32	Alx3 (ENSMUSG00000014603) #33	Strip1 (ENSMUSG00000014601) #34	Ahcyl1 (ENSMUSG00000027893) #36	Csf1 (ENSMUSG00000014599) #37	Eps8l3 (ENSMUSG00000040600)	Gstm5 (ENSMUSG00000004032)
Ryukyu mouse	MODERN SPECIES	12	I830077J02Rik (MGP_CAROLIEiJ_G0025479) #7	Atp5pb (MGP_CAROLIEiJ_G0025480) #8	Wdr77 (MGP_CAROLIEiJ_G0025481) #9	Ovgp1 (MGP_CAROLIEiJ_G0025482) #10	Pifo (MGP_CAROLIEiJ_G0025483) #11	Chil5 (MGP_CAROLIEiJ_G0025484) #12	Chia1 (MGP_CAROLIEiJ_G0025485) #13	Chil6 (MGP_CAROLIEiJ_G0025486) #14	Dennd2d (MGP_CAROLIEiJ_G0025487) #15	Cept1 (MGP_CAROLIEiJ_G0025488) #16	Dram2 (MGP_CAROLIEiJ_G0025489) #17	Lrif1 (MGP_CAROLIEiJ_G0025490) #18	Cd53 (MGP_CAROLIEiJ_G0025491) #19	Or11i1 (MGP_CAROLIEiJ_G0025492) #20	Kcna3 (MGP_CAROLIEiJ_G0025493) #21	Kcna2 (MGP_CAROLIEiJ_G0025494) #22	Kcna10 (MGP_CAROLIEiJ_G0025495) #23	Cym (MGP_CAROLIEiJ_G0025496) #24	MGP_CAROLIEiJ_G0025497 #25	Prok1 (MGP_CAROLIEiJ_G0025498) #26	MGP_CAROLIEiJ_G0025499 #27	Slc16a4 (MGP_CAROLIEiJ_G0025500) #28	Rbm15 (MGP_CAROLIEiJ_G0025501) #29	Kcnc4 (MGP_CAROLIEiJ_G0025502) #30	Slc6a17 (MGP_CAROLIEiJ_G0025503) #31	Ubl4b (MGP_CAROLIEiJ_G0025504) #32	Alx3 (MGP_CAROLIEiJ_G0025505) #33	Strip1 (MGP_CAROLIEiJ_G0025506) #34	MGP_CAROLIEiJ_G0025507 #35	Ahcyl1 (MGP_CAROLIEiJ_G0025508) #36	Csf1 (MGP_CAROLIEiJ_G0025509) #37