Gnathostomata	ANCESTRAL SPECIES	28	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000164122	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00730000111007.a.b	ENSGT00940000157530.b	ENSGT00390000013899.b	ENSGT00940000161262	ENSGT00390000013315
Euteleostomi	ANCESTRAL SPECIES	42	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000164122	ENSGT00940000153903.a.a	ENSGT00940000153201	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b	ENSGT00390000013899.b	ENSGT00940000161262
Sarcopterygii	ANCESTRAL SPECIES	114	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000164122	ENSGT00940000153903.a.a	ENSGT00940000153201	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b
Tetrapoda	ANCESTRAL SPECIES	9	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b	ENSGT00940000153571.b	ENSGT00940000160199	ENSGT00940000153438.a
Amniota	ANCESTRAL SPECIES	20	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b	ENSGT00390000016309	ENSGT00940000153571.b
Mammalia	ANCESTRAL SPECIES	9	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199
Theria	ANCESTRAL SPECIES	8	ENSGT00530000063359.B	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00940000170720	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00950000185387	ENSGT00940000159535	ENSGT00930000151070
Eutheria	ANCESTRAL SPECIES	3	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00940000170720	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00950000185387	ENSGT00940000159535	ENSGT00930000151070
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00940000170720	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00940000170720	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00940000170720	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Glires	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00940000170720	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Rodentia	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00940000170720	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Muroidea	ANCESTRAL SPECIES	2	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Muroidea_A	ANCESTRAL SPECIES		ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Murinae	ANCESTRAL SPECIES		ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Mus	ANCESTRAL SPECIES		ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Mus_A	ANCESTRAL SPECIES	1												ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Mus_B	ANCESTRAL SPECIES													ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Mus_C	ANCESTRAL SPECIES	14												ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Steppe mouse	MODERN SPECIES	3396												Mrgprd (ENSMSIG00000029549) #18	Mrgprf (ENSMSIG00000029547) #19	Tpcn2 (ENSMSIG00000029535) #20	Smim38 (ENSMSIG00000029534) #21	Ccnd1 (ENSMSIG00000029529) #22	LTO1 (ENSMSIG00000029520) #23	Fgf15 (ENSMSIG00000029515) #24	Fgf4 (ENSMSIG00000029514) #25	Fgf3 (ENSMSIG00000029512) #26	ENSMSIG00000029509 #27	Ano1 (ENSMSIG00000029432) #28	Ppfia1 (ENSMSIG00000029361) #29	Cttn (ENSMSIG00000029316) #30	Shank2 (ENSMSIG00000029202) #31	Acte1 (ENSMSIG00000029184) #32	Dhcr7 (ENSMSIG00000029174) #33	Nadsyn1 (ENSMSIG00000029170) #34	Mrgpre (ENSMSIG00000029169) #35	Mrgprg (ENSMSIG00000029167) #36	ENSMSIG00000029165 #37
spretus	MODERN SPECIES	16												Mrgprd (MGP_SPRETEiJ_G0031872) #18	Mrgprf (MGP_SPRETEiJ_G0031871) #19	Tpcn2 (MGP_SPRETEiJ_G0031870) #20	LTO1 (MGP_SPRETEiJ_G0031869) #23	Ccnd1 (MGP_SPRETEiJ_G0031868) #22	Fgf15 (MGP_SPRETEiJ_G0031867) #24	Fgf4 (MGP_SPRETEiJ_G0031866) #25	Fgf3 (MGP_SPRETEiJ_G0031865) #26	Ano1 (MGP_SPRETEiJ_G0031864) #28	Fadd (MGP_SPRETEiJ_G0031863)	Ppfia1 (MGP_SPRETEiJ_G0031862) #29	Cttn (MGP_SPRETEiJ_G0031861) #30	Shank2 (MGP_SPRETEiJ_G0031860) #31	Acte1 (MGP_SPRETEiJ_G0031859) #32	Dhcr7 (MGP_SPRETEiJ_G0031858) #33	Nadsyn1 (MGP_SPRETEiJ_G0031857) #34	Mrgpre (MGP_SPRETEiJ_G0031856) #35	Mrgprg (MGP_SPRETEiJ_G0031855) #36	Osbpl5 (MGP_SPRETEiJ_G0031854)	Tnfrsf26 (MGP_SPRETEiJ_G0031853)
Mouse	MODERN SPECIES	16												Mrgprd (ENSMUSG00000051207) #18	Mrgprf (ENSMUSG00000031070) #19	Smim38 (ENSMUSG00000109305) #21	Tpcn2 (ENSMUSG00000048677) #20	Ccnd1 (ENSMUSG00000070348) #22	LTO1 (ENSMUSG00000031072) #23	Fgf15 (ENSMUSG00000031073) #24	Fgf4 (ENSMUSG00000050917) #25	Fgf3 (ENSMUSG00000031074) #26	Ano1 (ENSMUSG00000031075) #28	Fadd (ENSMUSG00000031077)	Ppfia1 (ENSMUSG00000037519) #29	Cttn (ENSMUSG00000031078) #30	Shank2 (ENSMUSG00000037541) #31	Acte1 (ENSMUSG00000031085) #32	Dhcr7 (ENSMUSG00000058454) #33	Nadsyn1 (ENSMUSG00000031090) #34	Mrgpre (ENSMUSG00000048965) #35	Mrgprg (ENSMUSG00000050276) #36	Osbpl5 (ENSMUSG00000037606)
Ryukyu mouse	MODERN SPECIES	16													Mrgprd (MGP_CAROLIEiJ_G0030764) #18	Mrgprf (MGP_CAROLIEiJ_G0030763) #19	Tpcn2 (MGP_CAROLIEiJ_G0030762) #20	Ccnd1 (MGP_CAROLIEiJ_G0030761) #22	MGP_CAROLIEiJ_G0030760 #23	Fgf15 (MGP_CAROLIEiJ_G0030759) #24	Fgf4 (MGP_CAROLIEiJ_G0030758) #25	Fgf3 (MGP_CAROLIEiJ_G0030757) #26	Ano1 (MGP_CAROLIEiJ_G0030756) #28	Fadd (MGP_CAROLIEiJ_G0030755)	Ppfia1 (MGP_CAROLIEiJ_G0030754) #29	Cttn (MGP_CAROLIEiJ_G0030753) #30	Shank2 (MGP_CAROLIEiJ_G0030752) #31	Acte1 (MGP_CAROLIEiJ_G0030751) #32	Dhcr7 (MGP_CAROLIEiJ_G0030750) #33	Nadsyn1 (MGP_CAROLIEiJ_G0030749) #34	Mrgpre (MGP_CAROLIEiJ_G0030748) #35	Mrgprg (MGP_CAROLIEiJ_G0030747) #36	Osbpl5 (MGP_CAROLIEiJ_G0030746)
Shrew mouse	MODERN SPECIES		Ndufs8 (MGP_PahariEiJ_G0013971)	Tcirg1 (MGP_PahariEiJ_G0013970)	Chka (MGP_PahariEiJ_G0013969)	Kmt5b (MGP_PahariEiJ_G0013968)	1810055G02Rik (MGP_PahariEiJ_G0013967)	Lrp5 (MGP_PahariEiJ_G0013966)	Ppp6r3 (MGP_PahariEiJ_G0013965)	MGP_PahariEiJ_G0013964	Tesmin (MGP_PahariEiJ_G0013963)	Cpt1a (MGP_PahariEiJ_G0013962)	MGP_PahariEiJ_G0013961	Ighmbp2 (MGP_PahariEiJ_G0013960)	Mrgprd (MGP_PahariEiJ_G0013959) #18	Mrgprf (MGP_PahariEiJ_G0013958) #19	Tpcn2 (MGP_PahariEiJ_G0013957) #20	Ccnd1 (MGP_PahariEiJ_G0013956) #22	MGP_PahariEiJ_G0013955 #23	Fgf15 (MGP_PahariEiJ_G0013954) #24	Fgf4 (MGP_PahariEiJ_G0013953) #25	Fgf3 (MGP_PahariEiJ_G0013952) #26	Ano1 (MGP_PahariEiJ_G0013951) #28	Fadd (MGP_PahariEiJ_G0013950)	Ppfia1 (MGP_PahariEiJ_G0013949) #29	Cttn (MGP_PahariEiJ_G0013948) #30	Shank2 (MGP_PahariEiJ_G0013947) #31	Acte1 (MGP_PahariEiJ_G0013946) #32	MGP_PahariEiJ_G0013945 #33	Nadsyn1 (MGP_PahariEiJ_G0013944) #34	Mrgpre (MGP_PahariEiJ_G0013943) #35	Mrgprg (MGP_PahariEiJ_G0013942) #36	Osbpl5 (MGP_PahariEiJ_G0013941)
Rat	MODERN SPECIES		Tcirg1 (ENSRNOG00000017220)	Chka (ENSRNOG00000016791)	Kmt5b (ENSRNOG00000016790)	AABR07006081.1 (ENSRNOG00000016597)	RGD1311946 (ENSRNOG00000025245)	Lrp5 (ENSRNOG00000015911)	Ppp6r3 (ENSRNOG00000015540)	Gal (ENSRNOG00000015156)	Tesmin (ENSRNOG00000014671)	Cpt1a (ENSRNOG00000014254)	Mrpl21 (ENSRNOG00000013845)	Ighmbp2 (ENSRNOG00000013456)	Mrgprd (ENSRNOG00000013448) #18	Mrgprf (ENSRNOG00000013426) #19	Tpcn2 (ENSRNOG00000013387) #20	Ccnd1 (ENSRNOG00000020918) #22	Lto1 (ENSRNOG00000020903) #23	Fgf19 (ENSRNOG00000020899) #24	Fgf4 (ENSRNOG00000020890) #25	Fgf3 (ENSRNOG00000020888) #26	Ano1 (ENSRNOG00000020865) #28	Fadd (ENSRNOG00000047035)	ENSRNOG00000029588	Ppfia1 (ENSRNOG00000020857) #29	Cttn (ENSRNOG00000050994) #30	Shank2 (ENSRNOG00000050206) #31	LOC102552318 (ENSRNOG00000059303) #32	Dhcr7 (ENSRNOG00000020776) #33	Nadsyn1 (ENSRNOG00000020736) #34	Mrgpre (ENSRNOG00000065330) #35	Mrgprg (ENSRNOG00000069807) #36
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Golden Hamster	MODERN SPECIES	617	Chka (ENSMAUG00000017295)	Kmt5b (ENSMAUG00000018918)	ENSMAUG00000018025	1810055G02Rik (ENSMAUG00000017064)	Lrp5 (ENSMAUG00000018003)	Ppp6r3 (ENSMAUG00000019291)	Gal (ENSMAUG00000017428)	Tesmin (ENSMAUG00000017925)	Cpt1a (ENSMAUG00000018165)	Mrpl21 (ENSMAUG00000018243)	Ighmbp2 (ENSMAUG00000019893)	Mrgprf (ENSMAUG00000017389) #19	Tpcn2 (ENSMAUG00000018105) #20	ENSMAUG00000020083 #21	ENSMAUG00000001942	Ccnd1 (ENSMAUG00000017636) #22	LTO1 (ENSMAUG00000018685) #23	Fgf15 (ENSMAUG00000018536) #24	ENSMAUG00000018543 #25	Fgf3 (ENSMAUG00000017622) #26	Ano1 (ENSMAUG00000020665) #28	Fadd (ENSMAUG00000017656)	Ppfia1 (ENSMAUG00000019398) #29	Cttn (ENSMAUG00000018999) #30	Shank2 (ENSMAUG00000020561) #31	Acte1 (ENSMAUG00000018219) #32	Dhcr7 (ENSMAUG00000017958) #33	Nadsyn1 (ENSMAUG00000018638) #34	Mrgpre (ENSMAUG00000019867) #35	Mrgprg (ENSMAUG00000002319) #36	Osbpl5 (ENSMAUG00000018579)
Chinese hamster chok1gshd	MODERN SPECIES	401	Tcirg1 (ENSCGRG00001015923)	Chka (ENSCGRG00001013471)	Kmt5b (ENSCGRG00001019834)	1810055G02Rik (ENSCGRG00001015629)	Lrp5 (ENSCGRG00001011999)	Ppp6r3 (ENSCGRG00001009544)	Gal (ENSCGRG00001007993)	Tesmin (ENSCGRG00001021557)	Cpt1a (ENSCGRG00001018477)	Mrpl21 (ENSCGRG00001024565)	Ighmbp2 (ENSCGRG00001019126)	Mrgprd (ENSCGRG00001015216) #18	Mrgprf (ENSCGRG00001021238) #19	Tpcn2 (ENSCGRG00001010845) #20	ENSCGRG00001001688	Ccnd1 (ENSCGRG00001022268) #22	LTO1 (ENSCGRG00001016809) #23	Fgf15 (ENSCGRG00001006635) #24	Fgf4 (ENSCGRG00001018014) #25	Fgf3 (ENSCGRG00001022007) #26	Ano1 (ENSCGRG00001024262) #28	Fadd (ENSCGRG00001007270)	Ppfia1 (ENSCGRG00001010485) #29	Cttn (ENSCGRG00001016778) #30	ENSCGRG00001012540 #31	ENSCGRG00001014608 #31	Acte1 (ENSCGRG00001020527) #32	Dhcr7 (ENSCGRG00001000860) #33	Nadsyn1 (ENSCGRG00001009314) #34	Mrgpre (ENSCGRG00001001111) #35	Mrgprg (ENSCGRG00001012867) #36
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Prairie vole	MODERN SPECIES	16	ENSMOCG00000019842	Tcirg1 (ENSMOCG00000005946)	Chka (ENSMOCG00000007076)	Kmt5b (ENSMOCG00000015596)	1810055G02Rik (ENSMOCG00000021230)	Lrp5 (ENSMOCG00000011074)	Ppp6r3 (ENSMOCG00000020408)	Gal (ENSMOCG00000005202)	Tesmin (ENSMOCG00000003633)	Cpt1a (ENSMOCG00000014661)	Mrpl21 (ENSMOCG00000002555)	Ighmbp2 (ENSMOCG00000018939)	Mrgprf (ENSMOCG00000005355) #19	Tpcn2 (ENSMOCG00000013268) #20	ENSMOCG00000021239 #21	Ccnd1 (ENSMOCG00000013593) #22	LTO1 (ENSMOCG00000011612) #23	Fgf15 (ENSMOCG00000020351) #24	ENSMOCG00000003096 #25	Fgf3 (ENSMOCG00000022933) #26	Ano1 (ENSMOCG00000014655) #28	Fadd (ENSMOCG00000021270)	Ppfia1 (ENSMOCG00000006756) #29	ENSMOCG00000008235	Cttn (ENSMOCG00000016443) #30	Shank2 (ENSMOCG00000005495) #31	Acte1 (ENSMOCG00000001514) #32	Dhcr7 (ENSMOCG00000011891) #33	Nadsyn1 (ENSMOCG00000015097) #34	Mrgprg (ENSMOCG00000012347) #36	Osbpl5 (ENSMOCG00000008055)
Northern American deer mouse	MODERN SPECIES		Tcirg1 (ENSPEMG00000007012)	Chka (ENSPEMG00000010890)	Kmt5b (ENSPEMG00000013458)	1810055G02Rik (ENSPEMG00000016140)	Lrp5 (ENSPEMG00000011601)	Ppp6r3 (ENSPEMG00000018116)	Gal (ENSPEMG00000013588)	Tesmin (ENSPEMG00000019187)	Cpt1a (ENSPEMG00000003628)	Mrpl21 (ENSPEMG00000015425)	Ighmbp2 (ENSPEMG00000017775)	Mrgprd (ENSPEMG00000004118) #18	Mrgprf (ENSPEMG00000025731) #19	Tpcn2 (ENSPEMG00000018425) #20	Smim38 (ENSPEMG00000019158) #21	Ccnd1 (ENSPEMG00000018939) #22	LTO1 (ENSPEMG00000008663) #23	ENSPEMG00000027742	Fgf15 (ENSPEMG00000008128) #24	Fgf4 (ENSPEMG00000018637) #25	Fgf3 (ENSPEMG00000030989) #26	Ano1 (ENSPEMG00000019085) #28	Fadd (ENSPEMG00000025320)	Ppfia1 (ENSPEMG00000009542) #29	Cttn (ENSPEMG00000012118) #30	ENSPEMG00000002175	Shank2 (ENSPEMG00000015203) #31	Acte1 (ENSPEMG00000011345) #32	Dhcr7 (ENSPEMG00000018376) #33	Nadsyn1 (ENSPEMG00000003580) #34	Mrgpre (ENSPEMG00000002182) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1708															Tpcn2 (ENSNGAG00000015900) #20	Ccnd1 (ENSNGAG00000023723) #22	LTO1 (ENSNGAG00000023526) #23	Fgf15 (ENSNGAG00000002055) #24	ENSNGAG00000010283 #25	Fgf3 (ENSNGAG00000006555) #26	Ano1 (ENSNGAG00000023771) #28	Fadd (ENSNGAG00000013801)	Ppfia1 (ENSNGAG00000013560) #29	Cttn (ENSNGAG00000010588) #30	Shank2 (ENSNGAG00000020857) #31
Lesser Egyptian jerboa	MODERN SPECIES	53															ENSJJAG00000023706	Ccnd1 (ENSJJAG00000023518) #22	LTO1 (ENSJJAG00000022000) #23	Fgf15 (ENSJJAG00000015750) #24	Fgf4 (ENSJJAG00000012092) #25	Fgf3 (ENSJJAG00000021121) #26	Ano1 (ENSJJAG00000021888) #28	Fadd (ENSJJAG00000015124)	Ppfia1 (ENSJJAG00000024383) #29	Cttn (ENSJJAG00000013444) #30	Shank2 (ENSJJAG00000015229) #31	Acte1 (ENSJJAG00000000416) #32	Dhcr7 (ENSJJAG00000017191) #33	Nadsyn1 (ENSJJAG00000012419) #34	Osbpl5 (ENSJJAG00000020113)	Cars (ENSJJAG00000022992)	Nap1l4 (ENSJJAG00000001786)
Kangaroo rat	MODERN SPECIES	373	Unc93b1 (ENSDORG00000003564)	Aldh3b1 (ENSDORG00000003566)	ENSDORG00000003567	Tcirg1 (ENSDORG00000012469)	Chka (ENSDORG00000012471)	ENSDORG00000015449	Lrp5 (ENSDORG00000003026)	Ppp6r3 (ENSDORG00000015410)	ENSDORG00000013895	Cpt1a (ENSDORG00000011817)	Mrpl21 (ENSDORG00000025967)	Ighmbp2 (ENSDORG00000026350)	Mrgprd (ENSDORG00000023697) #18	Mrgprf (ENSDORG00000009826) #19	Tpcn2 (ENSDORG00000002980) #20	ENSDORG00000029122 #22	LTO1 (ENSDORG00000012520) #23	ENSDORG00000024888 #25	Ano1 (ENSDORG00000009084) #28	Ppfia1 (ENSDORG00000016082) #29	Cttn (ENSDORG00000009315) #30	Shank2 (ENSDORG00000011912) #31	Dhcr7 (ENSDORG00000026094) #33	Nadsyn1 (ENSDORG00000014370) #34	Mrgpre (ENSDORG00000015977) #35	Osbpl5 (ENSDORG00000011403)	ENSDORG00000029883	Cars (ENSDORG00000003786)	Nap1l4 (ENSDORG00000016630)	Phlda2 (ENSDORG00000016629)	Slc22a18 (ENSDORG00000027634)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00940000170720	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Sciuridae	ANCESTRAL SPECIES	22	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00940000170720	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535	ENSGT00390000006347.a
Marmotini	ANCESTRAL SPECIES	6	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535	ENSGT00390000006347.a
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	86	NDUFS8 (ENSMMMG00000000351)	ENSMMMG00000000378	CHKA (ENSMMMG00000000678)	KMT5B (ENSMMMG00000000789)	LRP5 (ENSMMMG00000001048)	PPP6R3 (ENSMMMG00000001095)	GAL (ENSMMMG00000001246)	TESMIN (ENSMMMG00000001259)	CPT1A (ENSMMMG00000001336)	MRPL21 (ENSMMMG00000001368)	IGHMBP2 (ENSMMMG00000001381)	MRGPRD (ENSMMMG00000001512) #18	MRGPRF (ENSMMMG00000001519) #19	TPCN2 (ENSMMMG00000001627) #20	ENSMMMG00000003260 #22	ENSMMMG00000003262 #22	LTO1 (ENSMMMG00000003272) #23	FGF19 (ENSMMMG00000003282) #24	FGF4 (ENSMMMG00000003298) #25	FGF3 (ENSMMMG00000003325) #26	ANO1 (ENSMMMG00000003366) #28	FADD (ENSMMMG00000003409)	PPFIA1 (ENSMMMG00000003424) #29	CTTN (ENSMMMG00000003602) #30	SHANK2 (ENSMMMG00000003690) #31	DHCR7 (ENSMMMG00000004168) #33	NADSYN1 (ENSMMMG00000004190) #34	MRGPRG (ENSMMMG00000004231) #36	OSBPL5 (ENSMMMG00000004241)	CARS1 (ENSMMMG00000004312)	NAP1L4 (ENSMMMG00000004457)
Alpin marmot	MODERN SPECIES	86	ALDH3B1 (ENSMMMG00000000301)	NDUFS8 (ENSMMMG00000000351)	ENSMMMG00000000378	CHKA (ENSMMMG00000000678)	KMT5B (ENSMMMG00000000789)	LRP5 (ENSMMMG00000001048)	PPP6R3 (ENSMMMG00000001095)	GAL (ENSMMMG00000001246)	TESMIN (ENSMMMG00000001259)	CPT1A (ENSMMMG00000001336)	MRPL21 (ENSMMMG00000001368)	IGHMBP2 (ENSMMMG00000001381)	MRGPRD (ENSMMMG00000001512) #18	MRGPRF (ENSMMMG00000001519) #19	TPCN2 (ENSMMMG00000001627) #20	ENSMMMG00000003260 #22	ENSMMMG00000003262 #22	LTO1 (ENSMMMG00000003272) #23	FGF19 (ENSMMMG00000003282) #24	FGF4 (ENSMMMG00000003298) #25	FGF3 (ENSMMMG00000003325) #26	ANO1 (ENSMMMG00000003366) #28	FADD (ENSMMMG00000003409)	PPFIA1 (ENSMMMG00000003424) #29	CTTN (ENSMMMG00000003602) #30	SHANK2 (ENSMMMG00000003690) #31	DHCR7 (ENSMMMG00000004168) #33	NADSYN1 (ENSMMMG00000004190) #34	MRGPRG (ENSMMMG00000004231) #36	OSBPL5 (ENSMMMG00000004241)	CARS1 (ENSMMMG00000004312)
Marmotini_b	ANCESTRAL SPECIES	19	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31
Squirrel	MODERN SPECIES	199	NDUFS8 (ENSSTOG00000011500)	TCIRG1 (ENSSTOG00000024529)	CHKA (ENSSTOG00000011503)	ENSSTOG00000019647	KMT5B (ENSSTOG00000024331)	ENSSTOG00000012277	LRP5 (ENSSTOG00000012285)	PPP6R3 (ENSSTOG00000005109)	GAL (ENSSTOG00000019759)	TESMIN (ENSSTOG00000012841)	CPT1A (ENSSTOG00000012856)	MRPL21 (ENSSTOG00000032759)	IGHMBP2 (ENSSTOG00000003792)	MRGPRF (ENSSTOG00000010947) #19	TPCN2 (ENSSTOG00000012097) #20	CCND1 (ENSSTOG00000000408) #22	LTO1 (ENSSTOG00000028728) #23	FGF19 (ENSSTOG00000021758) #24	ENSSTOG00000019792 #25	FGF3 (ENSSTOG00000023034) #26	ANO1 (ENSSTOG00000026271) #28	FADD (ENSSTOG00000033252)	PPFIA1 (ENSSTOG00000002704) #29	CTTN (ENSSTOG00000019535) #30	SHANK2 (ENSSTOG00000020969) #31
Arctic ground squirrel	MODERN SPECIES	172	NDUFS8 (ENSUPAG00010007713)	TCIRG1 (ENSUPAG00010007691)	CHKA (ENSUPAG00010007654)	KMT5B (ENSUPAG00010007478)	ENSUPAG00010007475	LRP5 (ENSUPAG00010007453)	PPP6R3 (ENSUPAG00010007337)	ENSUPAG00010007325	CPT1A (ENSUPAG00010007209)	MRPL21 (ENSUPAG00010007189)	IGHMBP2 (ENSUPAG00010007174)	MRGPRD (ENSUPAG00010007168) #18	MRGPRF (ENSUPAG00010007158) #19	TPCN2 (ENSUPAG00010007118) #20	SMIM38 (ENSUPAG00010007115) #21	CCND1 (ENSUPAG00010007111) #22	LTO1 (ENSUPAG00010007106) #23
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005024959	ENSSVLG00005024928	ENSSVLG00005024875	LRP5 (ENSSVLG00005024864)	ENSSVLG00005024045	GAL (ENSSVLG00005023853)	TESMIN (ENSSVLG00005023772)	CPT1A (ENSSVLG00005023707)	MRPL21 (ENSSVLG00005023646)	ENSSVLG00005023637	ENSSVLG00005023620	MRGPRD (ENSSVLG00005023594) #18	MRGPRF (ENSSVLG00005023569) #19	TPCN2 (ENSSVLG00005023184) #20	ENSSVLG00005023121	CCND1 (ENSSVLG00005023090) #22	LTO1 (ENSSVLG00005023000) #23	FGF19 (ENSSVLG00005022961) #24	FGF4 (ENSSVLG00005022938) #25	FGF3 (ENSSVLG00005022895) #26	ANO1 (ENSSVLG00005021586) #28	ENSSVLG00005021335	ENSSVLG00005021293	PPFIA1 (ENSSVLG00005020857) #29	CTTN (ENSSVLG00005020806) #30	ENSSVLG00005020779	SHANK2 (ENSSVLG00005020334) #31	ENSSVLG00005020240 ##31	DHCR7 (ENSSVLG00005020210) #33	NADSYN1 (ENSSVLG00005020150) #34	MRGPRE (ENSSVLG00005020125) #35
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00390000006347.a
Long-tailed chinchilla	MODERN SPECIES	129	NDUFS8 (ENSCLAG00000017156)	TCIRG1 (ENSCLAG00000014792)	CHKA (ENSCLAG00000014223)	KMT5B (ENSCLAG00000016628)	ENSCLAG00000017122	LRP5 (ENSCLAG00000016254)	PPP6R3 (ENSCLAG00000015508)	GAL (ENSCLAG00000016374)	TESMIN (ENSCLAG00000015628)	CPT1A (ENSCLAG00000016594)	MRPL21 (ENSCLAG00000016038)	IGHMBP2 (ENSCLAG00000015500)	MRGPRD (ENSCLAG00000016417) #18	MRGPRF (ENSCLAG00000016323) #19	TPCN2 (ENSCLAG00000016178) #20	CCND1 (ENSCLAG00000014981) #22	LTO1 (ENSCLAG00000014111) #23	FGF19 (ENSCLAG00000015041) #24	ENSCLAG00000014848 #25	FGF3 (ENSCLAG00000015995) #26	ANO1 (ENSCLAG00000015936) #28	FADD (ENSCLAG00000015722)	PPFIA1 (ENSCLAG00000015977) #29	CTTN (ENSCLAG00000016832) #30	SHANK2 (ENSCLAG00000017262) #31	ENSCLAG00000016369 #32	DHCR7 (ENSCLAG00000015513) #33	NADSYN1 (ENSCLAG00000016090) #34	OSBPL5 (ENSCLAG00000015702)	ENSCLAG00000016141	ENSCLAG00000015017 #25
Degu	MODERN SPECIES	59	ENSODEG00000017460	C11orf24 (ENSODEG00000017396)	LRP5 (ENSODEG00000017493)	ENSODEG00000020451	PPP6R3 (ENSODEG00000017311)	GAL (ENSODEG00000017519)	TESMIN (ENSODEG00000017728)	CPT1A (ENSODEG00000017481)	MRPL21 (ENSODEG00000017369)	IGHMBP2 (ENSODEG00000017354)	MRGPRD (ENSODEG00000017313) #18	MRGPRF (ENSODEG00000017539) #19	ENSODEG00000017628	ENSODEG00000017365	TPCN2 (ENSODEG00000017370) #20	CCND1 (ENSODEG00000017314) #22	LTO1 (ENSODEG00000017276) #23	FGF19 (ENSODEG00000017850) #24	FGF4 (ENSODEG00000017332) #25	FGF3 (ENSODEG00000017350) #26	ENSODEG00000017320 #28	ENSODEG00000017541 #28	ENSODEG00000020446	PPFIA1 (ENSODEG00000017203) #29	CTTN (ENSODEG00000017283) #30	SHANK2 (ENSODEG00000018120) #31	ENSODEG00000017405 #32	ENSODEG00000020450	DHCR7 (ENSODEG00000017100) #33	ENSODEG00000017514 #34	OSBPL5 (ENSODEG00000017355)
Guinea pig	MODERN SPECIES	42	NDUFS8 (ENSCPOG00000001416)	TCIRG1 (ENSCPOG00000001417)	CHKA (ENSCPOG00000022236)	KMT5B (ENSCPOG00000002147)	ENSCPOG00000000621	LRP5 (ENSCPOG00000008119)	PPP6R3 (ENSCPOG00000007353)	GAL (ENSCPOG00000004337)	TESMIN (ENSCPOG00000032989)	CPT1A (ENSCPOG00000004344)	MRPL21 (ENSCPOG00000038509)	IGHMBP2 (ENSCPOG00000007063)	MRGPRD (ENSCPOG00000025266) #18	MRGPRF (ENSCPOG00000033803) #19	TPCN2 (ENSCPOG00000002580) #20	CCND1 (ENSCPOG00000032886) #22	LTO1 (ENSCPOG00000031028) #23	FGF19 (ENSCPOG00000008147) #24	FGF4 (ENSCPOG00000013920) #25	FGF3 (ENSCPOG00000007355) #26	ANO1 (ENSCPOG00000011005) #28	FADD (ENSCPOG00000011290)	PPFIA1 (ENSCPOG00000005552) #29	CTTN (ENSCPOG00000005562) #30	SHANK2 (ENSCPOG00000009737) #31	ENSCPOG00000022995 #32	DHCR7 (ENSCPOG00000011633) #33	NADSYN1 (ENSCPOG00000015147) #34	MRGPRE (ENSCPOG00000004420) #35	ENSCPOG00000002584 #36	OSBPL5 (ENSCPOG00000015032)
Naked mole-rat female	MODERN SPECIES	14	CHKA (ENSHGLG00000014648)	KMT5B (ENSHGLG00000014467)	C11orf24 (ENSHGLG00000018642)	LRP5 (ENSHGLG00000012372)	ENSHGLG00000010435	GAL (ENSHGLG00000013095)	TESMIN (ENSHGLG00000006844)	CPT1A (ENSHGLG00000009799)	ENSHGLG00000041256	MRPL21 (ENSHGLG00000007657)	IGHMBP2 (ENSHGLG00000006468)	MRGPRD (ENSHGLG00000033970) #18	MRGPRF (ENSHGLG00000042564) #19	TPCN2 (ENSHGLG00000009786) #20	SMIM38 (ENSHGLG00000042963) #21	CCND1 (ENSHGLG00000039478) #22	ORAOV1 (ENSHGLG00000041285) #23	FGF19 (ENSHGLG00000049791) #24	FGF4 (ENSHGLG00000008219) #25	FGF3 (ENSHGLG00000006943) #26	ANO1 (ENSHGLG00000018162) #28	FADD (ENSHGLG00000038686)	PPFIA1 (ENSHGLG00000013241) #29	CTTN (ENSHGLG00000011727) #30	SHANK2 (ENSHGLG00000012313) #31	ENSHGLG00000046722 #31	ENSHGLG00000013700 #32	DHCR7 (ENSHGLG00000012353) #33	NADSYN1 (ENSHGLG00000010490) #34	ENSHGLG00000042806 #36	OSBPL5 (ENSHGLG00000009680)
Tree shrew	MODERN SPECIES	336																CCND1 (ENSTBEG00000008760) #22	FGF19 (ENSTBEG00000000310) #24
Primates	ANCESTRAL SPECIES		ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36
Strepsirrhini	ANCESTRAL SPECIES	35	ENSGT00940000162915	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34
Lemuriformes	ANCESTRAL SPECIES	14	ENSGT00940000162915	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000161499	ENSGT00940000162878	ENSGT00940000154853.c
Lemuriformes_a	ANCESTRAL SPECIES	3	ENSGT00940000162915	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000161499	ENSGT00940000162878	ENSGT00940000154853.c	ENSGT00940000154853.d
Coquerels sifaka	MODERN SPECIES	124	ALDH3B1 (ENSPCOG00000028800)	NDUFS8 (ENSPCOG00000000121)	TCIRG1 (ENSPCOG00000027699)	CHKA (ENSPCOG00000027662)	KMT5B (ENSPCOG00000028166)	C11orf24 (ENSPCOG00000018326)	LRP5 (ENSPCOG00000026929)	PPP6R3 (ENSPCOG00000028586)	GAL (ENSPCOG00000019500)	TESMIN (ENSPCOG00000022912)	CPT1A (ENSPCOG00000000084)	MRPL21 (ENSPCOG00000015404)	IGHMBP2 (ENSPCOG00000018759)	MRGPRF (ENSPCOG00000010107) #19	TPCN2 (ENSPCOG00000017980) #20	CCND1 (ENSPCOG00000027474) #22	LTO1 (ENSPCOG00000027650) #23	FGF19 (ENSPCOG00000020362) #24	FGF4 (ENSPCOG00000028304) #25	FGF3 (ENSPCOG00000025992) #26	ANO1 (ENSPCOG00000026720) #28	FADD (ENSPCOG00000022951)	PPFIA1 (ENSPCOG00000028686) #29	CTTN (ENSPCOG00000010752) #30	SHANK2 (ENSPCOG00000017133) #31	DHCR7 (ENSPCOG00000020649) #33	NADSYN1 (ENSPCOG00000020772) #34	LGALS12 (ENSPCOG00000027553)	PLAAT4 (ENSPCOG00000026183)	PLAAT2 (ENSPCOG00000022949)	PLAAT3 (ENSPCOG00000006605)
Greater bamboo lemur	MODERN SPECIES	300																CCND1 (ENSPSMG00000010693) #22	LTO1 (ENSPSMG00000010717) #23	FGF19 (ENSPSMG00000010730) #24	FGF4 (ENSPSMG00000010738) #25	FGF3 (ENSPSMG00000010747) #26	ANO1 (ENSPSMG00000010865) #28	FADD (ENSPSMG00000010924)	PPFIA1 (ENSPSMG00000011104) #29	ENSPSMG00000011253 #30	SHANK2 (ENSPSMG00000011450) #31	DHCR7 (ENSPSMG00000011650) #33	NADSYN1 (ENSPSMG00000011720) #34	LGALS12 (ENSPSMG00000011815)
Mouse lemur	MODERN SPECIES	27	ALDH3B1 (ENSMICG00000009516)	ENSMICG00000009523	TCIRG1 (ENSMICG00000009530)	CHKA (ENSMICG00000009554)	KMT5B (ENSMICG00000028472)	C11orf24 (ENSMICG00000035582)	LRP5 (ENSMICG00000014388)	PPP6R3 (ENSMICG00000003096)	GAL (ENSMICG00000046807)	TESMIN (ENSMICG00000001063)	CPT1A (ENSMICG00000001068)	MRPL21 (ENSMICG00000046580)	IGHMBP2 (ENSMICG00000043944)	MRGPRF (ENSMICG00000017866) #19	TPCN2 (ENSMICG00000017867) #20	CCND1 (ENSMICG00000033113) #22	LTO1 (ENSMICG00000003061) #23	FGF19 (ENSMICG00000047906) #24	FGF4 (ENSMICG00000046252) #25	FGF3 (ENSMICG00000045024) #26	ANO1 (ENSMICG00000017568) #28	FADD (ENSMICG00000047386)	ENSMICG00000003755 #29	CTTN (ENSMICG00000003767) #30	ENSMICG00000044974	SHANK2 (ENSMICG00000035602) #31	DHCR7 (ENSMICG00000017094) #33	NADSYN1 (ENSMICG00000017100) #34	LGALS12 (ENSMICG00000010263)	TSPAN32 (ENSMICG00000045977)	ENSMICG00000034071
Bushbaby	MODERN SPECIES	249	ALDH3B1 (ENSOGAG00000000789)	NDUFS8 (ENSOGAG00000013220)	TCIRG1 (ENSOGAG00000028104)	CHKA (ENSOGAG00000000790)	KMT5B (ENSOGAG00000025516)	C11orf24 (ENSOGAG00000032648)	LRP5 (ENSOGAG00000007721)	PPP6R3 (ENSOGAG00000007734)	GAL (ENSOGAG00000007742)	TESMIN (ENSOGAG00000007743)	CPT1A (ENSOGAG00000007747)	IGHMBP2 (ENSOGAG00000011671)	MRGPRF (ENSOGAG00000011677) #19	TPCN2 (ENSOGAG00000014554) #20	ENSOGAG00000024468	CCND1 (ENSOGAG00000011495) #22	LTO1 (ENSOGAG00000011848) #23	FGF19 (ENSOGAG00000028091) #24	FGF4 (ENSOGAG00000011500) #25	FGF3 (ENSOGAG00000029967) #26	ANO1 (ENSOGAG00000016331) #28	FADD (ENSOGAG00000016337)	PPFIA1 (ENSOGAG00000002232) #29	CTTN (ENSOGAG00000002239) #30	SHANK2 (ENSOGAG00000030187) #31
Haplorrhini	ANCESTRAL SPECIES		ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36
Tarsier	MODERN SPECIES	2498																CCND1 (ENSTSYG00000036017) #22	LTO1 (ENSTSYG00000030410) #23
Simiiformes	ANCESTRAL SPECIES		ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT01030000240235	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35
Platyrrhini	ANCESTRAL SPECIES	15	ENSGT00940000162915	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT01030000240235	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT00940000159535	ENSGT00390000006347.a
Cebidae	ANCESTRAL SPECIES		ENSGT00940000162915	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT01030000240235	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT00940000159535	ENSGT00390000006347.a
Cebidae_a	ANCESTRAL SPECIES	18	ENSGT00940000162915	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34
Capuchin	MODERN SPECIES	562											CPT1A (ENSCCAG00000025290)	MRPL21 (ENSCCAG00000023999)	IGHMBP2 (ENSCCAG00000027106)	MRGPRF (ENSCCAG00000027654) #19	TPCN2 (ENSCCAG00000035260) #20	CCND1 (ENSCCAG00000028296) #22	LTO1 (ENSCCAG00000019721) #23	FGF19 (ENSCCAG00000027414) #24	ENSCCAG00000023564 #25	FGF3 (ENSCCAG00000023892) #26
Bolivian squirrel monkey	MODERN SPECIES	184	CHKA (ENSSBOG00000029779)	ENSSBOG00000014251	KMT5B (ENSSBOG00000018620)	ENSSBOG00000017297	C11orf24 (ENSSBOG00000021901)	LRP5 (ENSSBOG00000011522)	PPP6R3 (ENSSBOG00000024673)	GAL (ENSSBOG00000018976)	ENSSBOG00000033953	CPT1A (ENSSBOG00000027234)	MRPL21 (ENSSBOG00000021429)	IGHMBP2 (ENSSBOG00000021342)	MRGPRF (ENSSBOG00000022916) #19	TPCN2 (ENSSBOG00000036110) #20	ENSSBOG00000023740	CCND1 (ENSSBOG00000031704) #22	LTO1 (ENSSBOG00000030139) #23	FGF19 (ENSSBOG00000032296) #24	FGF4 (ENSSBOG00000020328) #25	FGF3 (ENSSBOG00000028072) #26	ANO1 (ENSSBOG00000025783) #28	FADD (ENSSBOG00000022673)	PPFIA1 (ENSSBOG00000020432) #29	CTTN (ENSSBOG00000021638) #30	SHANK2 (ENSSBOG00000033655) #31	DHCR7 (ENSSBOG00000034440) #33	NADSYN1 (ENSSBOG00000019773) #34
Marmoset	MODERN SPECIES	2	PPP6R3 (ENSCJAG00000015752)	ENSCJAG00000079396	GAL (ENSCJAG00000015858)	TESMIN (ENSCJAG00000015860)	CPT1A (ENSCJAG00000015871)	MRPL21 (ENSCJAG00000015881)	IGHMBP2 (ENSCJAG00000015887)	ENSCJAG00000076956	MRGPRF (ENSCJAG00000079141) #19	TPCN2 (ENSCJAG00000015902) #20	ENSCJAG00000080728	ENSCJAG00000087214	ENSCJAG00000056159	ENSCJAG00000079289	ENSCJAG00000079611	CCND1 (ENSCJAG00000044694) #22	ENSCJAG00000075469	LTO1 (ENSCJAG00000078318) #23	FGF19 (ENSCJAG00000075154) #24	FGF4 (ENSCJAG00000005026) #25	FGF3 (ENSCJAG00000009730) #26	ANO1 (ENSCJAG00000071717) #28	ENSCJAG00000086216	FADD (ENSCJAG00000000932)	PPFIA1 (ENSCJAG00000000936) #29	CTTN (ENSCJAG00000000985) #30	SHANK2 (ENSCJAG00000001019) #31	ENSCJAG00000066476 #32	ENSCJAG00000070399	DHCR7 (ENSCJAG00000040023) #33	ENSCJAG00000085647 #34
Mas night monkey	MODERN SPECIES	411	CHKA (ENSANAG00000025868)	KMT5B (ENSANAG00000029415)	ENSANAG00000017977	C11orf24 (ENSANAG00000035026)	ENSANAG00000021978	LRP5 (ENSANAG00000027436)	PPP6R3 (ENSANAG00000020950)	GAL (ENSANAG00000038246)	TESMIN (ENSANAG00000011110)	CPT1A (ENSANAG00000017356)	MRPL21 (ENSANAG00000020754)	IGHMBP2 (ENSANAG00000027309)	MRGPRF (ENSANAG00000026421) #19	TPCN2 (ENSANAG00000022288) #20	ENSANAG00000022087	CCND1 (ENSANAG00000027376) #22	LTO1 (ENSANAG00000020841) #23	FGF19 (ENSANAG00000028313) #24	FGF4 (ENSANAG00000028917) #25	FGF3 (ENSANAG00000033426) #26	ANO1 (ENSANAG00000037157) #28	FADD (ENSANAG00000030818)	PPFIA1 (ENSANAG00000026851) #29	CTTN (ENSANAG00000023720) #30	SHANK2 (ENSANAG00000026955) #31	DHCR7 (ENSANAG00000028986) #33	NADSYN1 (ENSANAG00000028675) #34
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00910000147792	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00910000147590	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00910000147792	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00400000022774	ENSGT00940000157816 #22	ENSGT00910000147590	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00990000205266
Gibbon	MODERN SPECIES	19	TCIRG1 (ENSNLEG00000006527)	CHKA (ENSNLEG00000006538)	KMT5B (ENSNLEG00000033680)	C11orf24 (ENSNLEG00000006549)	LRP5 (ENSNLEG00000006550)	PPP6R3 (ENSNLEG00000006556)	GAL (ENSNLEG00000006599)	TESMIN (ENSNLEG00000006601)	CPT1A (ENSNLEG00000026864)	MRPL21 (ENSNLEG00000006605)	ENSNLEG00000027457	IGHMBP2 (ENSNLEG00000006609)	ENSNLEG00000006613 #18	TPCN2 (ENSNLEG00000006614) #20	ENSNLEG00000027800	CCND1 (ENSNLEG00000029930) #22	ENSNLEG00000010437 #23	FGF19 (ENSNLEG00000010441) #24	ENSNLEG00000033620	ENSNLEG00000010450 #26	ANO1 (ENSNLEG00000010451) #28	FADD (ENSNLEG00000010467)	ENSNLEG00000031707	PPFIA1 (ENSNLEG00000010473) #29	ENSNLEG00000010556 #30	ENSNLEG00000010602 #31	ENSNLEG00000034483 #31	DHCR7 (ENSNLEG00000032731) #33	NADSYN1 (ENSNLEG00000010685) #34	KRTAP5-7 (ENSNLEG00000010786)	ENSNLEG00000028330
Hominidae	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00400000022774	ENSGT00940000157816 #22	ENSGT00910000147590	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00990000205266
Orangutan	MODERN SPECIES	2	C11orf24 (ENSPPYG00000002972)	LRP5 (ENSPPYG00000036218)	PPP6R3 (ENSPPYG00000002970)	GAL (ENSPPYG00000002969)	TESMIN (ENSPPYG00000002968)	CPT1A (ENSPPYG00000002967)	ENSPPYG00000002966	IGHMBP2 (ENSPPYG00000002965)	MRGPRD (ENSPPYG00000002964) #18	MRGPRF (ENSPPYG00000037582) #19	TPCN2 (ENSPPYG00000002962) #20	SMIM38 (ENSPPYG00000032272) #21	MYEOV (ENSPPYG00000033224)	ENSPPYG00000018627	ENSPPYG00000039142	CCND1 (ENSPPYG00000002961) #22	LTO1 (ENSPPYG00000030489) #23	FGF19 (ENSPPYG00000002960) #24	ENSPPYG00000033162	FGF4 (ENSPPYG00000002958) #25	FGF3 (ENSPPYG00000002957) #26	ANO1 (ENSPPYG00000002956) #28	FADD (ENSPPYG00000002955)	PPFIA1 (ENSPPYG00000025904) #29	CTTN (ENSPPYG00000002954) #30	SHANK2 (ENSPPYG00000002953) #31	ENSPPYG00000036563 #32	DHCR7 (ENSPPYG00000033723) #33	NADSYN1 (ENSPPYG00000002948) #34	ZNF195 (ENSPPYG00000002946)	MRGPRE (ENSPPYG00000002945) #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00400000022774	ENSGT00940000157816 #22	ENSGT00910000147590	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00990000205266	ENSGT00390000004140.b
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	21	PURG (ENSGGOG00000023416)	TEX15 (ENSGGOG00000027549)	PPP2CB (ENSGGOG00000013978)	ENSGGOG00000016076	GSR (ENSGGOG00000002336)	GTF2E2 (ENSGGOG00000022495)	ENSGGOG00000040201	ENSGGOG00000004813	ENSGGOG00000036324	ENSGGOG00000044205	DCTN6 (ENSGGOG00000013074)	MBOAT4 (ENSGGOG00000003396)	ENSGGOG00000012811	ENSGGOG00000025722	SARAF (ENSGGOG00000022354)	ENSGGOG00000022765 #22	PSKH2 (ENSGGOG00000000087)	ATP6V0D2 (ENSGGOG00000013754)	SLC7A13 (ENSGGOG00000008511)	WWP1 (ENSGGOG00000014988)	RMDN1 (ENSGGOG00000015004)	ENSGGOG00000043147	CPNE3 (ENSGGOG00000009601)	ENSGGOG00000014784	CNGB3 (ENSGGOG00000010075)	ENSGGOG00000010542	CNBD1 (ENSGGOG00000005268)	ENSGGOG00000041656	ENSGGOG00000042950	MMP16 (ENSGGOG00000027756)	ENSGGOG00000042581
Gorilla	MODERN SPECIES	2	KMT5B (ENSGGOG00000004122)	C11orf24 (ENSGGOG00000027226)	LRP5 (ENSGGOG00000000038)	PPP6R3 (ENSGGOG00000006609)	GAL (ENSGGOG00000000252)	TESMIN (ENSGGOG00000001666)	ENSGGOG00000001670	MRPL21 (ENSGGOG00000012124)	IGHMBP2 (ENSGGOG00000012131)	MRGPRD (ENSGGOG00000027003) #18	MRGPRF (ENSGGOG00000005578) #19	TPCN2 (ENSGGOG00000010594) #20	SMIM38 (ENSGGOG00000038283) #21	MYEOV (ENSGGOG00000014636)	ENSGGOG00000003377	ENSGGOG00000037803 #22	ENSGGOG00000002858 #23	ENSGGOG00000039153	FGF19 (ENSGGOG00000024713) #24	ENSGGOG00000040661	FGF4 (ENSGGOG00000010088) #25	FGF3 (ENSGGOG00000008854) #26	ANO1 (ENSGGOG00000013637) #28	FADD (ENSGGOG00000003989)	PPFIA1 (ENSGGOG00000013266) #29	ENSGGOG00000003011 #30	SHANK2 (ENSGGOG00000003019) #31	DHCR7 (ENSGGOG00000006547) #33	NADSYN1 (ENSGGOG00000006551) #34	ENSGGOG00000038292	KRTAP5-10 (ENSGGOG00000016395)
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00400000022774	ENSGT00940000157816 #22	ENSGT00910000147590	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00990000205266	ENSGT00940000160995.b.e.a
Human	MODERN SPECIES	2	CHKA (ENSG00000110721)	KMT5B (ENSG00000110066)	C11orf24 (ENSG00000171067)	LRP5 (ENSG00000162337)	PPP6R3 (ENSG00000110075)	GAL (ENSG00000069482)	TESMIN (ENSG00000132749)	CPT1A (ENSG00000110090)	MRPL21 (ENSG00000197345)	IGHMBP2 (ENSG00000132740)	MRGPRD (ENSG00000172938) #18	MRGPRF (ENSG00000172935) #19	TPCN2 (ENSG00000162341) #20	SMIM38 (ENSG00000284713) #21	MYEOV (ENSG00000172927)	CCND1 (ENSG00000110092) #22	LTO1 (ENSG00000149716) #23	FGF19 (ENSG00000162344) #24	FGF4 (ENSG00000075388) #25	FGF3 (ENSG00000186895) #26	ANO1 (ENSG00000131620) #28	FADD (ENSG00000168040)	PPFIA1 (ENSG00000131626) #29	CTTN (ENSG00000085733) #30	SHANK2 (ENSG00000162105) #31	DHCR7 (ENSG00000172893) #33	NADSYN1 (ENSG00000172890) #34	KRTAP5-7 (ENSG00000244411)	KRTAP5-8 (ENSG00000241233)	KRTAP5-9 (ENSG00000254997)	KRTAP5-10 (ENSG00000204572)
Pan	ANCESTRAL SPECIES	1	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00400000022774	ENSGT00950000182857.a.a.b.a.r.a.a.a.a.a.a	ENSGT00910000148731	ENSGT00940000157816 #22	ENSGT00910000147590	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00910000147131	ENSGT00910000144208.g.a
Chimpanzee	MODERN SPECIES	2	LRP5 (ENSPTRG00000003983)	PPP6R3 (ENSPTRG00000003984)	GAL (ENSPTRG00000003985)	TESMIN (ENSPTRG00000003986)	CPT1A (ENSPTRG00000003987)	MRPL21 (ENSPTRG00000003988)	IGHMBP2 (ENSPTRG00000003989)	MRGPRD (ENSPTRG00000003990) #18	MRGPRF (ENSPTRG00000003991) #19	TPCN2 (ENSPTRG00000003992) #20	SMIM38 (ENSPTRG00000049784) #21	MYEOV (ENSPTRG00000003994)	ENSPTRG00000044016	ENSPTRG00000046997	ENSPTRG00000051585	CCND1 (ENSPTRG00000052519) #22	ENSPTRG00000003997 #23	ENSPTRG00000049321	FGF19 (ENSPTRG00000003998) #24	ENSPTRG00000052479	FGF4 (ENSPTRG00000004000) #25	FGF3 (ENSPTRG00000004001) #26	ANO1 (ENSPTRG00000052288) #28	FADD (ENSPTRG00000004004)	PPFIA1 (ENSPTRG00000004005) #29	ENSPTRG00000051160	ENSPTRG00000049553 #30	ENSPTRG00000048213	ENSPTRG00000046187	SHANK2 (ENSPTRG00000004007) #31	DHCR7 (ENSPTRG00000004013) #33
Bonobo	MODERN SPECIES	2	C11orf24 (ENSPPAG00000030344)	LRP5 (ENSPPAG00000027899)	PPP6R3 (ENSPPAG00000040283)	GAL (ENSPPAG00000030688)	TESMIN (ENSPPAG00000042130)	CPT1A (ENSPPAG00000026146)	ENSPPAG00000035588	MRPL21 (ENSPPAG00000038393)	IGHMBP2 (ENSPPAG00000027355)	MRGPRD (ENSPPAG00000018331) #18	MRGPRF (ENSPPAG00000028148) #19	TPCN2 (ENSPPAG00000031099) #20	MYEOV (ENSPPAG00000027386)	ENSPPAG00000033657	ENSPPAG00000014303	ENSPPAG00000036375 #22	ENSPPAG00000035520 #23	ENSPPAG00000041380	FGF19 (ENSPPAG00000025447) #24	ENSPPAG00000033224	FGF3 (ENSPPAG00000041885) #26	ANO1 (ENSPPAG00000018068) #28	ENSPPAG00000034750	PPFIA1 (ENSPPAG00000042805) #29	ENSPPAG00000036436	CTTN (ENSPPAG00000041298) #30	SHANK2 (ENSPPAG00000040027) #31	DHCR7 (ENSPPAG00000038909) #33	NADSYN1 (ENSPPAG00000001380) #34	ENSPPAG00000044001	ENSPPAG00000029134
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00390000009529.b.a	ENSGT00940000153377.B.e	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00910000147792	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00400000022774	ENSGT00940000157816 #22	ENSGT00910000147590	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00900000140979.a.a.`b.a.o.b	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000017913.d	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00910000147792	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00400000022774	ENSGT00940000157816 #22	ENSGT01030000240235	ENSGT00910000147590	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000017913.d	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34
Vervet Monkey	MODERN SPECIES		NDUFS8 (ENSCSAG00000008821)	TCIRG1 (ENSCSAG00000008911)	CHKA (ENSCSAG00000008953)	KMT5B (ENSCSAG00000008964)	ENSCSAG00000008972	LRP5 (ENSCSAG00000008983)	PPP6R3 (ENSCSAG00000009005)	GAL (ENSCSAG00000009024)	TESMIN (ENSCSAG00000009039)	CPT1A (ENSCSAG00000009054)	MRPL21 (ENSCSAG00000009065)	IGHMBP2 (ENSCSAG00000009185)	MRGPRD (ENSCSAG00000009230) #18	MRGPRF (ENSCSAG00000009245) #19	TPCN2 (ENSCSAG00000009261) #20	CCND1 (ENSCSAG00000009273) #22	LTO1 (ENSCSAG00000009279) #23	ENSCSAG00000018961	FGF19 (ENSCSAG00000009286) #24	FGF4 (ENSCSAG00000009298) #25	FGF3 (ENSCSAG00000009310) #26	ANO1 (ENSCSAG00000009324) #28	ENSCSAG00000009328	PPFIA1 (ENSCSAG00000009343) #29	CTTN (ENSCSAG00000009367) #30	SHANK2 (ENSCSAG00000009403) #31	DHCR7 (ENSCSAG00000009420) #33	NADSYN1 (ENSCSAG00000009433) #34	ENSCSAG00000009446	ENSCSAG00000009479	ENSCSAG00000009521
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00910000147792	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00400000022774	ENSGT00940000157816 #22	ENSGT01030000240235	ENSGT00910000147590	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00960000186788	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000017913.d	ENSGT00960000186932	ENSGT00940000163884 #32
Cercopithecinae_b	ANCESTRAL SPECIES	16	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B.e	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00400000022774	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00960000186788	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000017913.d	ENSGT00960000186932	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00990000205266
Olive baboon	MODERN SPECIES	3	CHKA (ENSPANG00000015385)	ENSPANG00000047861	ENSPANG00000003110	C11orf24 (ENSPANG00000023334)	LRP5 (ENSPANG00000023602)	PPP6R3 (ENSPANG00000025892)	ENSPANG00000043414	TESMIN (ENSPANG00000013061)	CPT1A (ENSPANG00000020294)	MRPL21 (ENSPANG00000018811)	IGHMBP2 (ENSPANG00000023650)	MRGPRD (ENSPANG00000039940) #18	MRGPRF (ENSPANG00000025893) #19	TPCN2 (ENSPANG00000007008) #20	SMIM38 (ENSPANG00000032349) #21	CCND1 (ENSPANG00000043007) #22	ENSPANG00000008596 #23	FGF19 (ENSPANG00000042087) #24	FGF4 (ENSPANG00000019451) #25	FGF3 (ENSPANG00000023335) #26	ENSPANG00000038148	ENSPANG00000042473	ANO1 (ENSPANG00000003976) #28	FADD (ENSPANG00000023465)	PPFIA1 (ENSPANG00000015386) #29	CTTN (ENSPANG00000013112) #30	SHANK2 (ENSPANG00000018812) #31	ENSPANG00000044958	DHCR7 (ENSPANG00000013062) #33	NADSYN1 (ENSPANG00000011530) #34	KRTAP5-9 (ENSPANG00000031335)
Cercopithecinae_d	ANCESTRAL SPECIES	6	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B.e	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00400000022774	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00960000186788	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000017913.d	ENSGT00960000186932	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00990000205266
Sooty mangabey	MODERN SPECIES	518	TCIRG1 (ENSCATG00000031312)	CHKA (ENSCATG00000041180)	KMT5B (ENSCATG00000042964)	ENSCATG00000042618	LRP5 (ENSCATG00000039241)	PPP6R3 (ENSCATG00000036683)	GAL (ENSCATG00000042505)	TESMIN (ENSCATG00000042664)	CPT1A (ENSCATG00000015860)	MRPL21 (ENSCATG00000041171)	IGHMBP2 (ENSCATG00000031229)	MRGPRD (ENSCATG00000022559) #18	MRGPRF (ENSCATG00000033118) #19	TPCN2 (ENSCATG00000041149) #20	MYEOV (ENSCATG00000034953)	CCND1 (ENSCATG00000040258) #22	LTO1 (ENSCATG00000039172) #23	FGF19 (ENSCATG00000038630) #24	ENSCATG00000032815	FGF4 (ENSCATG00000034644) #25	FGF3 (ENSCATG00000023721) #26	ANO1 (ENSCATG00000029714) #28	FADD (ENSCATG00000035655)	PPFIA1 (ENSCATG00000035769) #29	CTTN (ENSCATG00000038054) #30	ENSCATG00000041207	SHANK2 (ENSCATG00000038261) #31	DHCR7 (ENSCATG00000031848) #33	NADSYN1 (ENSCATG00000030630) #34	KRTAP5-7 (ENSCATG00000042729)	ENSCATG00000042575
Drill	MODERN SPECIES	942	NDUFS8 (ENSMLEG00000031739)	TCIRG1 (ENSMLEG00000010508)	CHKA (ENSMLEG00000043175)	KMT5B (ENSMLEG00000035508)	ENSMLEG00000038166	LRP5 (ENSMLEG00000011072)	PPP6R3 (ENSMLEG00000039058)	GAL (ENSMLEG00000028956)	TESMIN (ENSMLEG00000036701)	CPT1A (ENSMLEG00000035301)	MRPL21 (ENSMLEG00000044097)	IGHMBP2 (ENSMLEG00000043529)	MRGPRF (ENSMLEG00000029222) #19	TPCN2 (ENSMLEG00000042447) #20	MYEOV (ENSMLEG00000043368)	ENSMLEG00000040718 #22	LTO1 (ENSMLEG00000035959) #23	ENSMLEG00000042285 #24	ENSMLEG00000023931	FGF3 (ENSMLEG00000035348) #26	ANO1 (ENSMLEG00000028568) #28	FADD (ENSMLEG00000038039)	PPFIA1 (ENSMLEG00000040535) #29	CTTN (ENSMLEG00000003674) #30	SHANK2 (ENSMLEG00000039304) #31	ENSMLEG00000032675
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000156431	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00910000147792	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00400000022774	ENSGT00940000157816 #22	ENSGT01030000240235	ENSGT00910000147590	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00960000186788	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000017913.d	ENSGT00960000186932	ENSGT00940000163884 #32
Pig-tailed macaque	MODERN SPECIES	433	CHKA (ENSMNEG00000041615)	KMT5B (ENSMNEG00000028922)	ENSMNEG00000035330	ENSMNEG00000035688	LRP5 (ENSMNEG00000044124)	PPP6R3 (ENSMNEG00000045264)	GAL (ENSMNEG00000041422)	TESMIN (ENSMNEG00000045298)	CPT1A (ENSMNEG00000037562)	MRPL21 (ENSMNEG00000036906)	ENSMNEG00000040189	IGHMBP2 (ENSMNEG00000043511)	MRGPRF (ENSMNEG00000028189) #19	TPCN2 (ENSMNEG00000043437) #20	MYEOV (ENSMNEG00000040855)	CCND1 (ENSMNEG00000040753) #22	LTO1 (ENSMNEG00000042591) #23	FGF19 (ENSMNEG00000035985) #24	ENSMNEG00000044891	FGF4 (ENSMNEG00000042206) #25	FGF3 (ENSMNEG00000044971) #26	ANO1 (ENSMNEG00000004507) #28	FADD (ENSMNEG00000038046)	PPFIA1 (ENSMNEG00000031136) #29	CTTN (ENSMNEG00000037757) #30	SHANK2 (ENSMNEG00000031408) #31	ENSMNEG00000032531	DHCR7 (ENSMNEG00000043442) #33	NADSYN1 (ENSMNEG00000032850) #34	ENSMNEG00000028295	ENSMNEG00000031331
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000153377.B.e	ENSGT01100000263493.a.b.a.b.a.b.a.b.a.a.a	ENSGT00940000163244.d.b.a.b.b.b.a.a	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00910000147792	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT00940000164709.a.b.b.a.b.a.a.a.a.a.a.a.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT01030000240235	ENSGT00910000147590	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01100000263493.a.b.a.a.b.b.a.b.a.b.a.a.b	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000017913.d	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000001933	TESMIN (ENSMFAG00000032724)	ENSMFAG00000054259	CPT1A (ENSMFAG00000031988)	ENSMFAG00000050046	ENSMFAG00000065150	MRPL21 (ENSMFAG00000043823)	IGHMBP2 (ENSMFAG00000043909)	ENSMFAG00000062875	ENSMFAG00000052017	MRGPRD (ENSMFAG00000065051) #18	MRGPRF (ENSMFAG00000031267) #19	TPCN2 (ENSMFAG00000045821) #20	ENSMFAG00000056625	ENSMFAG00000048085	CCND1 (ENSMFAG00000039013) #22	ENSMFAG00000048830	LTO1 (ENSMFAG00000063304) #23	FGF19 (ENSMFAG00000043051) #24	FGF4 (ENSMFAG00000052634) #25	FGF3 (ENSMFAG00000036070) #26	ANO1 (ENSMFAG00000000653) #28	FADD (ENSMFAG00000041718)	PPFIA1 (ENSMFAG00000032570) #29	CTTN (ENSMFAG00000022887) #30	ENSMFAG00000060197	SHANK2 (ENSMFAG00000031467) #31	ENSMFAG00000007500	ENSMFAG00000058717	ENSMFAG00000062361 ##31	ENSMFAG00000052327 #32
Rhesus	MODERN SPECIES	5	C14H11orf24 (ENSMMUG00000019253)	ENSMMUG00000049489	ENSMMUG00000058610	LRP5 (ENSMMUG00000031237)	PPP6R3 (ENSMMUG00000016213)	GAL (ENSMMUG00000064140)	TESMIN (ENSMMUG00000001777)	CPT1A (ENSMMUG00000001780)	ENSMMUG00000062742	MRPL21 (ENSMMUG00000010124)	IGHMBP2 (ENSMMUG00000010128)	ENSMMUG00000051144	MRGPRD (ENSMMUG00000010129) #18	MRGPRF (ENSMMUG00000047446) #19	TPCN2 (ENSMMUG00000010784) #20	CCND1 (ENSMMUG00000002368) #22	ENSMMUG00000057523	ENSMMUG00000049990	LTO1 (ENSMMUG00000002369) #23	FGF19 (ENSMMUG00000053386) #24	FGF4 (ENSMMUG00000057940) #25	FGF3 (ENSMMUG00000051149) #26	ENSMMUG00000056834	ANO1 (ENSMMUG00000019734) #28	FADD (ENSMMUG00000054645)	PPFIA1 (ENSMMUG00000013265) #29	CTTN (ENSMMUG00000013267) #30	ENSMMUG00000052168	ENSMMUG00000061775	ENSMMUG00000064128	SHANK2 (ENSMMUG00000019736) #31
Rhinopithecus	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00390000009529.b.a	ENSGT00940000153377.B.e	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00400000022774	ENSGT00940000157816 #22	ENSGT00910000147590	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00900000140979.a.a.`b.a.o.b.b	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000017913.d	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	100	ZMYM2 (ENSRBIG00000035593)	GJA3 (ENSRBIG00000044002)	GJB2 (ENSRBIG00000022663)	ENSRBIG00000044426	PPP6R3 (ENSRBIG00000044728)	GAL (ENSRBIG00000043331)	TESMIN (ENSRBIG00000041391)	CPT1A (ENSRBIG00000007771)	MRPL21 (ENSRBIG00000044044)	IGHMBP2 (ENSRBIG00000044249)	MRGPRF (ENSRBIG00000030308) #19	TPCN2 (ENSRBIG00000037035) #20	SMIM38 (ENSRBIG00000027460) #21	ENSRBIG00000029980	MYEOV (ENSRBIG00000038697)	CCND1 (ENSRBIG00000036860) #22	LTO1 (ENSRBIG00000042427) #23	ENSRBIG00000036535	FGF19 (ENSRBIG00000032547) #24	FGF4 (ENSRBIG00000010219) #25	FGF3 (ENSRBIG00000030779) #26	ANO1 (ENSRBIG00000014113) #28	FADD (ENSRBIG00000036931)	PPFIA1 (ENSRBIG00000000739) #29	ENSRBIG00000042884	CTTN (ENSRBIG00000039974) #30	ENSRBIG00000034203	SHANK2 (ENSRBIG00000040196) #31	ENSRBIG00000042124	ENSRBIG00000028148 #32	DHCR7 (ENSRBIG00000013070) #33
Black snub-nosed monkey	MODERN SPECIES	55																ENSRBIG00000022878 #22
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	2322															MYEOV (ENSRROG00000045689)	CCND1 (ENSRROG00000032723) #22	ENSRROG00000032169	LTO1 (ENSRROG00000034319) #23	FGF19 (ENSRROG00000032527) #24	FGF4 (ENSRROG00000028586) #25	FGF3 (ENSRROG00000043451) #26	ANO1 (ENSRROG00000033110) #28	FADD (ENSRROG00000041037)	ENSRROG00000035511	PPFIA1 (ENSRROG00000040126) #29	CTTN (ENSRROG00000040322) #30	ENSRROG00000033991	ENSRROG00000045526	SHANK2 (ENSRROG00000031929) #31	DHCR7 (ENSRROG00000041957) #33	NADSYN1 (ENSRROG00000026981) #34
Golden snub-nosed monkey	MODERN SPECIES	191																ENSRROG00000037351 #22
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535	ENSGT00930000151070.d.a
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b ##18	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b ##18	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Suina	ANCESTRAL SPECIES	14	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159535.c	ENSGT00390000006347.a	ENSGT00940000153362.b
Pig	MODERN SPECIES	10	NDUFS8 (ENSSSCG00000037455)	TCIRG1 (ENSSSCG00000012890)	CHKA (ENSSSCG00000012889)	KMT5B (ENSSSCG00000031459)	ENSSSCG00000012886	LRP5 (ENSSSCG00000012885)	PPP6R3 (ENSSSCG00000012884)	GAL (ENSSSCG00000012883)	TESMIN (ENSSSCG00000012882)	CPT1A (ENSSSCG00000012880)	ENSSSCG00000012879	IGHMBP2 (ENSSSCG00000012878)	ENSSSCG00000042011 #18	MRGPRF (ENSSSCG00000034441) #19	TPCN2 (ENSSSCG00000012875) #20	CCND1 (ENSSSCG00000037900) #22	LTO1 (ENSSSCG00000012874) #23	FGF19 (ENSSSCG00000012871) #24	FGF4 (ENSSSCG00000012870) #25	FGF3 (ENSSSCG00000061049) #26	ANO1 (ENSSSCG00000024158) #28	FADD (ENSSSCG00000054981)	PPFIA1 (ENSSSCG00000037451) #29	CTTN (ENSSSCG00000031769) #30	SHANK2 (ENSSSCG00000033043) #31	ENSSSCG00000062960 #31	ENSSSCG00000049374 #32	DHCR7 (ENSSSCG00000021181) #33	NADSYN1 (ENSSSCG00000012859) #34	OSBPL5 (ENSSSCG00000012862)	CARS1 (ENSSSCG00000012857)
Chacoan peccary	MODERN SPECIES	921	ENSCWAG00000006537	NDUFS8 (ENSCWAG00000006464)	TCIRG1 (ENSCWAG00000006382)	CHKA (ENSCWAG00000006285)	KMT5B (ENSCWAG00000006216)	ENSCWAG00000006195	LRP5 (ENSCWAG00000006098)	PPP6R3 (ENSCWAG00000005865)	GAL (ENSCWAG00000005790)	TESMIN (ENSCWAG00000005668)	CPT1A (ENSCWAG00000005608)	MRPL21 (ENSCWAG00000005572)	IGHMBP2 (ENSCWAG00000005480)	MRGPRF (ENSCWAG00000005456) #19	TPCN2 (ENSCWAG00000005384) #20	CCND1 (ENSCWAG00000005332) #22	LTO1 (ENSCWAG00000005292) #23	FGF19 (ENSCWAG00000005256) #24	FGF4 (ENSCWAG00000005233) #25	FGF3 (ENSCWAG00000005211) #26	ANO1 (ENSCWAG00000005024) #28	FADD (ENSCWAG00000004977)	PPFIA1 (ENSCWAG00000004778) #29	CTTN (ENSCWAG00000004655) #30
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b ##18	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT01070000254034 #21	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b ##18	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Pecora	ANCESTRAL SPECIES	13	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00960000191094	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b ##18	ENSGT01030000234639.A.b.a.b.a.a.a.a #36
Percora_a	ANCESTRAL SPECIES	16	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00960000191094	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Bovidae	ANCESTRAL SPECIES	16	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00960000191094	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Caprinae	ANCESTRAL SPECIES	20	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00960000191094	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Rambouillet Sheep	MODERN SPECIES	13	ENSOARG00020014508	CHKA (ENSOARG00020014607)	KMT5B (ENSOARG00020014904)	ENSOARG00020015122	LRP5 (ENSOARG00020015176)	PPP6R3 (ENSOARG00020015496)	GAL (ENSOARG00020016179)	TESMIN (ENSOARG00020016224)	CPT1A (ENSOARG00020016497)	ENSOARG00020016650	ENSOARG00020016715	IGHMBP2 (ENSOARG00020016777)	ENSOARG00020016943 #18	MRGPRF (ENSOARG00020017039) #19	SMIM38 (ENSOARG00020017868) #21	CCND1 (ENSOARG00020018440) #22	LTO1 (ENSOARG00020018493) #23	FGF19 (ENSOARG00020018648) #24	FGF4 (ENSOARG00020018705) #25	FGF3 (ENSOARG00020018755) #26	ANO1 (ENSOARG00020018806) #28	FADD (ENSOARG00020019152)	ENSOARG00020019183	PPFIA1 (ENSOARG00020019227) #29	CTTN (ENSOARG00020019665) #30	SHANK2 (ENSOARG00020020051) #31	ENSOARG00020020696 #32	DHCR7 (ENSOARG00020020761) #33	NADSYN1 (ENSOARG00020020816) #34	MRGPRG (ENSOARG00020020951) #36	ENSOARG00020020976
Goat	MODERN SPECIES	21	TCIRG1 (ENSCHIG00000021975)	CHKA (ENSCHIG00000014786)	KMT5B (ENSCHIG00000025585)	ENSCHIG00000016165	LRP5 (ENSCHIG00000019530)	PPP6R3 (ENSCHIG00000020367)	GAL (ENSCHIG00000024788)	TESMIN (ENSCHIG00000026439)	ENSCHIG00000019619	CPT1A (ENSCHIG00000015344)	MRPL21 (ENSCHIG00000020757)	IGHMBP2 (ENSCHIG00000011703)	ENSCHIG00000008487 #18	MRGPRF (ENSCHIG00000024512) #19	TPCN2 (ENSCHIG00000024724) #20	CCND1 (ENSCHIG00000010534) #22	LTO1 (ENSCHIG00000016576) #23	FGF19 (ENSCHIG00000012980) #24	FGF4 (ENSCHIG00000010447) #25	FGF3 (ENSCHIG00000001606) #26	ANO1 (ENSCHIG00000025110) #28	FADD (ENSCHIG00000008257)	ENSCHIG00000020155	PPFIA1 (ENSCHIG00000006687) #29	CTTN (ENSCHIG00000026835) #30	SHANK2 (ENSCHIG00000023742) #31	ENSCHIG00000020525 #32	DHCR7 (ENSCHIG00000014907) #33	NADSYN1 (ENSCHIG00000007275) #34	OSBPL5 (ENSCHIG00000024291)	ENSCHIG00000016294
Bovinae	ANCESTRAL SPECIES	24	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00960000191094	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
American bison	DUPLICATION
American bison	MODERN SPECIES	3011	NDUFS8 (ENSBBBG00000011803)	TCIRG1 (ENSBBBG00000011829)	CHKA (ENSBBBG00000002204)	KMT5B (ENSBBBG00000011927)	ENSBBBG00000008495	LRP5 (ENSBBBG00000007211)	PPP6R3 (ENSBBBG00000002323)	GAL (ENSBBBG00000007883)	TESMIN (ENSBBBG00000012323)	CPT1A (ENSBBBG00000012354)	MRPL21 (ENSBBBG00000002340)	ENSBBBG00000012361	MRGPRD (ENSBBBG00000002343) #18	MRGPRF (ENSBBBG00000012368) #19	TPCN2 (ENSBBBG00000012427) #20	ENSBBBG00000002380 #22	ENSBBBG00000002382 #22	LTO1 (ENSBBBG00000012464) #23	FGF19 (ENSBBBG00000012472) #24	FGF4 (ENSBBBG00000012474) #25	ANO1 (ENSBBBG00000012506) #28	FADD (ENSBBBG00000012511)	ENSBBBG00000012521	PPFIA1 (ENSBBBG00000012561) #29	CTTN (ENSBBBG00000002407) #30	SHANK2 (ENSBBBG00000012602) #31	DHCR7 (ENSBBBG00000012621) #33	NADSYN1 (ENSBBBG00000006985) #34	MRGPRG (ENSBBBG00000012662) #36	OSBPL5 (ENSBBBG00000002460)	ENSBBBG00000012752
American bison	MODERN SPECIES	3011	TCIRG1 (ENSBBBG00000011829)	CHKA (ENSBBBG00000002204)	KMT5B (ENSBBBG00000011927)	ENSBBBG00000008495	LRP5 (ENSBBBG00000007211)	PPP6R3 (ENSBBBG00000002323)	GAL (ENSBBBG00000007883)	TESMIN (ENSBBBG00000012323)	CPT1A (ENSBBBG00000012354)	MRPL21 (ENSBBBG00000002340)	ENSBBBG00000012361	MRGPRD (ENSBBBG00000002343) #18	MRGPRF (ENSBBBG00000012368) #19	TPCN2 (ENSBBBG00000012427) #20	ENSBBBG00000002380 #22	ENSBBBG00000002382 #22	LTO1 (ENSBBBG00000012464) #23	FGF19 (ENSBBBG00000012472) #24	FGF4 (ENSBBBG00000012474) #25	ANO1 (ENSBBBG00000012506) #28	FADD (ENSBBBG00000012511)	ENSBBBG00000012521	PPFIA1 (ENSBBBG00000012561) #29	CTTN (ENSBBBG00000002407) #30	SHANK2 (ENSBBBG00000012602) #31	DHCR7 (ENSBBBG00000012621) #33	NADSYN1 (ENSBBBG00000006985) #34	MRGPRG (ENSBBBG00000012662) #36	OSBPL5 (ENSBBBG00000002460)	ENSBBBG00000012752	NAP1L4 (ENSBBBG00000001798)
Bos	ANCESTRAL SPECIES	11	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00950000182901.a.a.b.b.a.b.a.b.a.a.a	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00960000191094	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Bos_a	ANCESTRAL SPECIES	34	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00950000182901.a.a.b.b.a.b.a.b.a.a.a	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00990000205605	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00960000191094	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Domestic yak	MODERN SPECIES	21	CORO1B (ENSBGRG00000014832)	ENSBGRG00000014533	ENSBGRG00000014144	CDK2AP2 (ENSBGRG00000014064)	CABP2 (ENSBGRG00000013947)	ENSBGRG00000013866	ENSBGRG00000013805	NDUFV1 (ENSBGRG00000013540)	TBX10 (ENSBGRG00000013152)	ENSBGRG00000012721	ENSBGRG00000012448	ENSBGRG00000008704	ENSBGRG00000008684	ENSBGRG00000008216	ENSBGRG00000008155	CCND1 (ENSBGRG00000024441) #22	ENSBGRG00000024404	ENSBGRG00000024377 #24	FGF4 (ENSBGRG00000024355) #25	ENSBGRG00000024302 #26	FADD (ENSBGRG00000023022)	DHCR7 (ENSBGRG00000017928) #33	ENSBGRG00000017907 #34	ENSBGRG00000015824	ENSBGRG00000015239	ENSBGRG00000015190	ENSBGRG00000014821	ENSBGRG00000012314	ENSBGRG00000012167	INS (ENSBGRG00000010351)	ENSBGRG00000010105
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	2316	ENSBMUG00000005121	ENSBMUG00000005125	ENSBMUG00000005142	ENSBMUG00000005168	PPP6R3 (ENSBMUG00000005493)	GAL (ENSBMUG00000005636)	TESMIN (ENSBMUG00000005656)	CPT1A (ENSBMUG00000005671)	MRPL21 (ENSBMUG00000005686)	IGHMBP2 (ENSBMUG00000005704)	ENSBMUG00000005724 #18	ENSBMUG00000005759 #18	MRGPRF (ENSBMUG00000005775) #19	TPCN2 (ENSBMUG00000005793) #20	ENSBMUG00000005824 #22	ENSBMUG00000005837 #22	LTO1 (ENSBMUG00000005875) #23	ENSBMUG00000005895 #25	ANO1 (ENSBMUG00000005970) #28	FADD (ENSBMUG00000005994)	ENSBMUG00000006016	PPFIA1 (ENSBMUG00000006068) #29	CTTN (ENSBMUG00000006181) #30	ENSBMUG00000006218 #31
Wild yak	MODERN SPECIES	2316	KMT5B (ENSBMUG00000005099)	ENSBMUG00000005121	ENSBMUG00000005125	ENSBMUG00000005142	ENSBMUG00000005168	PPP6R3 (ENSBMUG00000005493)	GAL (ENSBMUG00000005636)	TESMIN (ENSBMUG00000005656)	CPT1A (ENSBMUG00000005671)	MRPL21 (ENSBMUG00000005686)	IGHMBP2 (ENSBMUG00000005704)	ENSBMUG00000005724 #18	ENSBMUG00000005759 #18	MRGPRF (ENSBMUG00000005775) #19	TPCN2 (ENSBMUG00000005793) #20	ENSBMUG00000005824 #22	ENSBMUG00000005837 #22	LTO1 (ENSBMUG00000005875) #23	ENSBMUG00000005895 #25	ANO1 (ENSBMUG00000005970) #28	FADD (ENSBMUG00000005994)	ENSBMUG00000006016	PPFIA1 (ENSBMUG00000006068) #29	CTTN (ENSBMUG00000006181) #30	ENSBMUG00000006218 #31
Bos_b	ANCESTRAL SPECIES	10	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00950000182901.a.a.b.b.a.b.a.b.a.a.a	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT00960000191094	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Hybrid Bos Indicus	MODERN SPECIES	21	ENSBIXG00005006157	KMT5B (ENSBIXG00005021706)	ENSBIXG00005021733	ENSBIXG00005021753	LRP5 (ENSBIXG00005005995)	PPP6R3 (ENSBIXG00005003728)	ENSBIXG00005022087	TESMIN (ENSBIXG00005022165)	CPT1A (ENSBIXG00005022352)	ENSBIXG00005022450	IGHMBP2 (ENSBIXG00005022495)	ENSBIXG00005022523 #18	ENSBIXG00005022549 #18	MRGPRF (ENSBIXG00005022567) #19	TPCN2 (ENSBIXG00005005450) #20	CCND1 (ENSBIXG00005003878) #22	LTO1 (ENSBIXG00005022702) #23	FGF19 (ENSBIXG00005022715) #24	FGF4 (ENSBIXG00005022740) #25	FGF3 (ENSBIXG00005003897) #26	ANO1 (ENSBIXG00005022912) #28	FADD (ENSBIXG00005022985)	ENSBIXG00005023006	PPFIA1 (ENSBIXG00005003994) #29	CTTN (ENSBIXG00005023643) #30	SHANK2 (ENSBIXG00005004100) #31	ENSBIXG00005023997 #32	DHCR7 (ENSBIXG00005024034) #33	NADSYN1 (ENSBIXG00005024203) #34	MRGPRG (ENSBIXG00005024242) #36	OSBPL5 (ENSBIXG00005024555)
Cow	MODERN SPECIES	21	KMT5B (ENSBTAG00000001185)	C29H11orf24 (ENSBTAG00000004392)	LRP5 (ENSBTAG00000005903)	ENSBTAG00000011830	PPP6R3 (ENSBTAG00000009584)	GAL (ENSBTAG00000009393)	TESMIN (ENSBTAG00000053218)	CPT1A (ENSBTAG00000021999)	MRPL21 (ENSBTAG00000004348)	IGHMBP2 (ENSBTAG00000022185)	ENSBTAG00000046090 #18	ENSBTAG00000016774 #18	MRGPRF (ENSBTAG00000015185) #19	TPCN2 (ENSBTAG00000015183) #20	LTO1 (ENSBTAG00000011898)	CCND1 (ENSBTAG00000017514) #22	FGF19 (ENSBTAG00000017285) #24	FGF4 (ENSBTAG00000012563) #25	FGF3 (ENSBTAG00000008623) #26	ANO1 (ENSBTAG00000009997) #28	FADD (ENSBTAG00000018274)	ENSBTAG00000053788	PPFIA1 (ENSBTAG00000022188) #29	CTTN (ENSBTAG00000006071) #30	SHANK2 (ENSBTAG00000003171) #31	ACTE1 (ENSBTAG00000004212) #32	DHCR7 (ENSBTAG00000016465) #33	NADSYN1 (ENSBTAG00000016470) #34	MRGPRG (ENSBTAG00000031271) #36	OSBPL5 (ENSBTAG00000001077)	ENSBTAG00000039129
Siberian musk deer	MODERN SPECIES	1226	NDUFS8 (ENSMMSG00000023617)	TCIRG1 (ENSMMSG00000023600)	CHKA (ENSMMSG00000023562)	KMT5B (ENSMMSG00000023533)	ENSMMSG00000023522	LRP5 (ENSMMSG00000023500)	PPP6R3 (ENSMMSG00000023347)	GAL (ENSMMSG00000023307)	TESMIN (ENSMMSG00000023272)	CPT1A (ENSMMSG00000023241)	MRPL21 (ENSMMSG00000023225)	IGHMBP2 (ENSMMSG00000023204)	ENSMMSG00000023188 #18	MRGPRF (ENSMMSG00000023179) #19	TPCN2 (ENSMMSG00000023131) #20	CCND1 (ENSMMSG00000023111) #22	LTO1 (ENSMMSG00000023097) #23	FGF19 (ENSMMSG00000023088) #24	FGF4 (ENSMMSG00000023082) #25	FGF3 (ENSMMSG00000023074) #26
Yarkand deer	MODERN SPECIES	11	TCIRG1 (ENSCHYG00000003734)	CHKA (ENSCHYG00000003799)	KMT5B (ENSCHYG00000003849)	ENSCHYG00000003880	LRP5 (ENSCHYG00000003897)	PPP6R3 (ENSCHYG00000003967)	GAL (ENSCHYG00000004104)	TESMIN (ENSCHYG00000004115)	CPT1A (ENSCHYG00000004136)	ENSCHYG00000004181	IGHMBP2 (ENSCHYG00000004233)	ENSCHYG00000004308 #18	ENSCHYG00000004314 #18	MRGPRF (ENSCHYG00000000036) #19	TPCN2 (ENSCHYG00000000093) #20	CCND1 (ENSCHYG00000000255) #22	LTO1 (ENSCHYG00000000282) #23	FGF19 (ENSCHYG00000000308) #24	FGF4 (ENSCHYG00000000320) #25	FGF3 (ENSCHYG00000000327) #26	ANO1 (ENSCHYG00000000377) #28	FADD (ENSCHYG00000000532)	ENSCHYG00000000547	ENSCHYG00000000552	PPFIA1 (ENSCHYG00000000593) #29	ENSCHYG00000000798 #30	SHANK2 (ENSCHYG00000000934) #31	ENSCHYG00000001247 #32	DHCR7 (ENSCHYG00000001261) #33	NADSYN1 (ENSCHYG00000001306) #34	ENSCHYG00000001517 ##18
Cetacea	ANCESTRAL SPECIES	4	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426.d #23	ENSGT00390000009426.c.a.a.a #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535	ENSGT00930000151070.d.b
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426.d #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431.jb	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426.d #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a
Dolphin	MODERN SPECIES	4004																CCND1 (ENSTTRG00000017310) #22	LTO1 (ENSTTRG00000017307) #23
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431.jb	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00390000018351.n	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426.d #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a
Vaquita	MODERN SPECIES	19	NDUFS8 (ENSPSNG00000013024)	TCIRG1 (ENSPSNG00000013176)	CHKA (ENSPSNG00000013362)	KMT5B (ENSPSNG00000013500)	ENSPSNG00000013665	LRP5 (ENSPSNG00000013733)	PPP6R3 (ENSPSNG00000014158)	GAL (ENSPSNG00000015309)	TESMIN (ENSPSNG00000015408)	ENSPSNG00000015638	CPT1A (ENSPSNG00000015716)	MRPL21 (ENSPSNG00000015914)	IGHMBP2 (ENSPSNG00000016024)	MRGPRF (ENSPSNG00000016200) #19	TPCN2 (ENSPSNG00000016263) #20	CCND1 (ENSPSNG00000016389) #22	ENSPSNG00000016465 #23	FGF19 (ENSPSNG00000016539) #24	FGF4 (ENSPSNG00000016594) #25	ENSPSNG00000016648 #26	ANO1 (ENSPSNG00000016772) #28	FADD (ENSPSNG00000016987)	PPFIA1 (ENSPSNG00000017107) #29	CTTN (ENSPSNG00000017766) #30	ENSPSNG00000017888 #31	ENSPSNG00000018400 #31	DHCR7 (ENSPSNG00000018441) #33	NADSYN1 (ENSPSNG00000018498) #34	OSBPL5 (ENSPSNG00000018671)	CARS1 (ENSPSNG00000018889)	NAP1L4 (ENSPSNG00000019014)
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431.jb	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00390000018351.n	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426.c.a.a.a #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a
Narwhal	MODERN SPECIES	314	TCIRG1 (ENSMMNG00015020611)	CHKA (ENSMMNG00015020690)	KMT5B (ENSMMNG00015020754)	ENSMMNG00015020790	LRP5 (ENSMMNG00015020832)	PPP6R3 (ENSMMNG00015020961)	GAL (ENSMMNG00015021087)	TESMIN (ENSMMNG00015021117)	GATC (ENSMMNG00015021129)	CPT1A (ENSMMNG00015021158)	MRPL21 (ENSMMNG00015021206)	IGHMBP2 (ENSMMNG00015021229)	ENSMMNG00015021257 #18	MRGPRF (ENSMMNG00015021269) #19	TPCN2 (ENSMMNG00015021380) #20	CCND1 (ENSMMNG00015021479) #22	ENSMMNG00015021499 #23	FGF19 (ENSMMNG00015021518) #24	FGF4 (ENSMMNG00015021528) #25	ENSMMNG00015021536 #26	ANO1 (ENSMMNG00015021557) #28	FADD (ENSMMNG00015021617)	PPFIA1 (ENSMMNG00015016039) #29	CTTN (ENSMMNG00015016600) #30	SHANK2 (ENSMMNG00015016892) #31	DHCR7 (ENSMMNG00015017225) #33	NADSYN1 (ENSMMNG00015017289) #34	MRGPRG (ENSMMNG00015017407) #36	OSBPL5 (ENSMMNG00015017448)	CARS1 (ENSMMNG00015017665)	NAP1L4 (ENSMMNG00015017808)
Beluga whale	MODERN SPECIES	7	TCIRG1 (ENSDLEG00000007283)	CHKA (ENSDLEG00000007265)	KMT5B (ENSDLEG00000007251)	ENSDLEG00000007238	LRP5 (ENSDLEG00000006885)	PPP6R3 (ENSDLEG00000006813)	GAL (ENSDLEG00000006803)	ENSDLEG00000006799	TESMIN (ENSDLEG00000006791)	CPT1A (ENSDLEG00000006719)	MRPL21 (ENSDLEG00000006686)	IGHMBP2 (ENSDLEG00000006566)	ENSDLEG00000006544 #18	MRGPRF (ENSDLEG00000006538) #19	TPCN2 (ENSDLEG00000006495) #20	CCND1 (ENSDLEG00000006485) #22	ENSDLEG00000006473	ENSDLEG00000006464 #24	FGF4 (ENSDLEG00000006458) #25	FGF3 (ENSDLEG00000006451) #26	ANO1 (ENSDLEG00000006391) #28	ENSDLEG00000006384	PPFIA1 (ENSDLEG00000006322) #29	CTTN (ENSDLEG00000006293) #30	SHANK2 (ENSDLEG00000006237) #31	DHCR7 (ENSDLEG00000006218) #33	NADSYN1 (ENSDLEG00000006200) #34	MRGPRG (ENSDLEG00000006188) #36	OSBPL5 (ENSDLEG00000006170)	ENSDLEG00000006166	CARS1 (ENSDLEG00000006156)
Sperm whale	MODERN SPECIES	9											SMIM38 (ENSPCTG00005012013) #21	TPCN2 (ENSPCTG00005012033) #20	MRGPRF (ENSPCTG00005012133) #19	IGHMBP2 (ENSPCTG00005012180)	MRPL21 (ENSPCTG00005012277)	CCND1 (ENSPCTG00005012304) #22	LTO1 (ENSPCTG00005012359) #23	FGF19 (ENSPCTG00005012534) #24	FGF4 (ENSPCTG00005012579) #25	FGF3 (ENSPCTG00005012631) #26	ANO1 (ENSPCTG00005012731) #28	ENSPCTG00005012992	ENSPCTG00005013014	PPFIA1 (ENSPCTG00005013091) #29	CTTN (ENSPCTG00005013533) #30	SHANK2 (ENSPCTG00005014075) #31	DHCR7 (ENSPCTG00005015137) #33	NADSYN1 (ENSPCTG00005015196) #34	MRGPRG (ENSPCTG00005015332) #36	OSBPL5 (ENSPCTG00005015374)	ENSPCTG00005015621
Blue whale	MODERN SPECIES	19	UNC93B1 (ENSBMSG00010004898)	ALDH3B1 (ENSBMSG00010004922)	NDUFS8 (ENSBMSG00010004952)	CHKA (ENSBMSG00010004966)	KMT5B (ENSBMSG00010004978)	ENSBMSG00010004983	LRP5 (ENSBMSG00010004990)	PPP6R3 (ENSBMSG00010005022)	GAL (ENSBMSG00010005047)	CPT1A (ENSBMSG00010005084)	ENSBMSG00010005133	MRPL21 (ENSBMSG00010005141)	IGHMBP2 (ENSBMSG00010005154)	MRGPRF (ENSBMSG00010005176) #19	TPCN2 (ENSBMSG00010005216) #20	CCND1 (ENSBMSG00010005276) #22	ENSBMSG00010005297 #23	FGF19 (ENSBMSG00010005311) #24	FGF4 (ENSBMSG00010005321) #25	FGF3 (ENSBMSG00010005331) #26	ANO1 (ENSBMSG00010005353) #28	FADD (ENSBMSG00010005386)	PPFIA1 (ENSBMSG00010005441) #29	CTTN (ENSBMSG00010005521) #30	SHANK2 (ENSBMSG00010005601) #31	DHCR7 (ENSBMSG00010005765) #33	NADSYN1 (ENSBMSG00010005789) #34	OSBPL5 (ENSBMSG00010005841)	ENSBMSG00010005900	CARS1 (ENSBMSG00010006110)	NAP1L4 (ENSBMSG00010006393)
Camelidae	ANCESTRAL SPECIES	18	ENSGT00940000162915	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a
Arabian camel	MODERN SPECIES	1	ALDH3B1 (ENSCDRG00005009325)	NDUFS8 (ENSCDRG00005009196)	TCIRG1 (ENSCDRG00005009035)	CHKA (ENSCDRG00005008677)	KMT5B (ENSCDRG00005008575)	ENSCDRG00005008524	ENSCDRG00005008491	PPP6R3 (ENSCDRG00005007732)	GAL (ENSCDRG00005007648)	TESMIN (ENSCDRG00005007444)	CPT1A (ENSCDRG00005007333)	MRPL21 (ENSCDRG00005007269)	IGHMBP2 (ENSCDRG00005007128)	MRGPRF (ENSCDRG00005007035) #19	TPCN2 (ENSCDRG00005006714) #20	CCND1 (ENSCDRG00005006610) #22	LTO1 (ENSCDRG00005021470) #23	FGF19 (ENSCDRG00005021465) #24	FGF4 (ENSCDRG00005021463) #25	ENSCDRG00005021451 #26	ANO1 (ENSCDRG00005021443) #28	FADD (ENSCDRG00005021431)	PPFIA1 (ENSCDRG00005021405) #29	CTTN (ENSCDRG00005021382) #30	ENSCDRG00005021368 #31	ENSCDRG00005021363 #31	ENSCDRG00005021359 #31	ENSCDRG00005021353 #32	DHCR7 (ENSCDRG00005021350) #33	NADSYN1 (ENSCDRG00005021345) #34	ENSCDRG00005021343
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b ##18	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Laurasiatheria_c	ANCESTRAL SPECIES	20	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00950000185387	ENSGT00940000159535	ENSGT00930000151070.d.a
Chiroptera	ANCESTRAL SPECIES	14	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b
Microchiroptera	ANCESTRAL SPECIES	13	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535	ENSGT00930000151070.d.a	ENSGT00930000151070.d.b
Greater horseshoe bat	MODERN SPECIES	2	NDUFS8 (ENSRFEG00010021301)	TCIRG1 (ENSRFEG00010021289)	CHKA (ENSRFEG00010021236)	KMT5B (ENSRFEG00010021206)	ENSRFEG00010021193	LRP5 (ENSRFEG00010021140)	PPP6R3 (ENSRFEG00010021009)	GAL (ENSRFEG00010020955)	TESMIN (ENSRFEG00010020904)	CPT1A (ENSRFEG00010020866)	MRPL21 (ENSRFEG00010020842)	IGHMBP2 (ENSRFEG00010020811)	ENSRFEG00010020788 #18	MRGPRF (ENSRFEG00010020778) #19	TPCN2 (ENSRFEG00010020715) #20	CCND1 (ENSRFEG00010020663) #22	LTO1 (ENSRFEG00010020618) #23	FGF19 (ENSRFEG00010020594) #24	FGF4 (ENSRFEG00010020567) #25	FGF3 (ENSRFEG00010020546) #26	ANO1 (ENSRFEG00010020393) #28	FADD (ENSRFEG00010020342)	PPFIA1 (ENSRFEG00010020279) #29	CTTN (ENSRFEG00010020070) #30	SHANK2 (ENSRFEG00010019833) #31	DHCR7 (ENSRFEG00010019782) #33	NADSYN1 (ENSRFEG00010019709) #34	ENSRFEG00010019689	MRGPRG (ENSRFEG00010019682) #36	ENSRFEG00010019667	ENSRFEG00010019649
Microbat	MODERN SPECIES	1155														MRGPRD (ENSMLUG00000008974) #18	TPCN2 (ENSMLUG00000000099) #20	CCND1 (ENSMLUG00000011181) #22	LTO1 (ENSMLUG00000011236) #23	FGF19 (ENSMLUG00000002512) #24	FGF4 (ENSMLUG00000009916) #25	FGF3 (ENSMLUG00000016503) #26	PPFIA1 (ENSMLUG00000001700) #29	BRSK2 (ENSMLUG00000016128)	PRRG4 (ENSMLUG00000010470)	QSER1 (ENSMLUG00000010482)	DEPDC7 (ENSMLUG00000003052)	TCP11L1 (ENSMLUG00000003062)	ENSMLUG00000003073	HIPK3 (ENSMLUG00000014987)	KIAA1549L (ENSMLUG00000014997)	C11orf91 (ENSMLUG00000013619)	ENSMLUG00000013131
Megabat	MODERN SPECIES	3985																CCND1 (ENSPVAG00000016173) #22	LTO1 (ENSPVAG00000016178) #23
Equus	ANCESTRAL SPECIES	11	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.d #18	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00950000182857.a.a.a	ENSGT00940000155733.a.a	ENSGT00940000160892
Donkey	MODERN SPECIES	21	KMT5B (ENSEASG00005006021)	ENSEASG00005036637	LRP5 (ENSEASG00005006074)	PPP6R3 (ENSEASG00005006224)	GAL (ENSEASG00005007730)	TESMIN (ENSEASG00005007731)	CPT1A (ENSEASG00005007732)	ENSEASG00005007733	ENSEASG00005032095 #18	ENSEASG00005007740 #18	IGHMBP2 (ENSEASG00005007735)	MRGPRF (ENSEASG00005007743) #19	TPCN2 (ENSEASG00005007747) #20	SMIM38 (ENSEASG00005030431) #21	ENSEASG00005029364	CCND1 (ENSEASG00005007754) #22	LTO1 (ENSEASG00005028684) #23	FGF19 (ENSEASG00005034459) #24	FGF4 (ENSEASG00005007763) #25	FGF3 (ENSEASG00005025286) #26	ANO1 (ENSEASG00005007772) #28	FADD (ENSEASG00005026333)	ENSEASG00005032237 #29
Horse	MODERN SPECIES	3	NDUFS8 (ENSECAG00000010175)	TCIRG1 (ENSECAG00000010196)	CHKA (ENSECAG00000011539)	KMT5B (ENSECAG00000012952)	C12H11orf24 (ENSECAG00000028930)	LRP5 (ENSECAG00000013180)	PPP6R3 (ENSECAG00000015322)	GAL (ENSECAG00000016579)	CPT1A (ENSECAG00000016852)	MRPL21 (ENSECAG00000019258)	IGHMBP2 (ENSECAG00000019360)	ENSECAG00000035247 #18	ENSECAG00000019576 #18	MRGPRF (ENSECAG00000019588) #19	TPCN2 (ENSECAG00000019619) #20	CCND1 (ENSECAG00000038536) #22	LTO1 (ENSECAG00000020265) #23	FGF19 (ENSECAG00000036646) #24	FGF4 (ENSECAG00000031103) #25	FGF3 (ENSECAG00000031321) #26	ANO1 (ENSECAG00000020314) #28	FADD (ENSECAG00000021437)	PPFIA1 (ENSECAG00000026889) #29	CTTN (ENSECAG00000021450) #30	SHANK2 (ENSECAG00000022208) #31	ACTE1 (ENSECAG00000023320) #32	DHCR7 (ENSECAG00000023341) #33	NADSYN1 (ENSECAG00000023476) #34	ENSECAG00000031265 ##18	ENSECAG00000041951	ENSECAG00000037254
Carnivora	ANCESTRAL SPECIES	7	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b ##18	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Caniformia	ANCESTRAL SPECIES	21	ENSGT00390000003049.f	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b ##18	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Caniformia_b	ANCESTRAL SPECIES	19	ENSGT00390000003049.f	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535	ENSGT00930000151070.d.b
Mustelinae	ANCESTRAL SPECIES	3	ENSGT00390000003049.f	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152.q #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535	ENSGT00930000151070.d.b
Ferret	MODERN SPECIES	233	TCIRG1 (ENSMPUG00000004236)	CHKA (ENSMPUG00000004254)	KMT5B (ENSMPUG00000004326)	ENSMPUG00000004339	LRP5 (ENSMPUG00000004345)	PPP6R3 (ENSMPUG00000004357)	GAL (ENSMPUG00000004372)	TESMIN (ENSMPUG00000004382)	CPT1A (ENSMPUG00000004418)	MRPL21 (ENSMPUG00000004430)	IGHMBP2 (ENSMPUG00000004439)	MRGPRD (ENSMPUG00000004515) #18	MRGPRF (ENSMPUG00000004529) #19	TPCN2 (ENSMPUG00000004534) #20	ENSMPUG00000004558	CCND1 (ENSMPUG00000004567) #22	FGF19 (ENSMPUG00000004606) #24	FGF4 (ENSMPUG00000004613) #25	ENSMPUG00000004643 #26	ENSMPUG00000004650	ENSMPUG00000004659	ENSMPUG00000019030	ENSMPUG00000004664	ENSMPUG00000004671	ENSMPUG00000004677	ANO1 (ENSMPUG00000004681) #28	FADD (ENSMPUG00000004702)	ENSMPUG00000004709	PPFIA1 (ENSMPUG00000004719) #29	ENSMPUG00000004738	CTTN (ENSMPUG00000004744) #30
American mink	MODERN SPECIES	104	ENSNVIG00000012648	ENSNVIG00000012636	CHKA (ENSNVIG00000012580)	KMT5B (ENSNVIG00000012483)	ENSNVIG00000012467	LRP5 (ENSNVIG00000012415)	PPP6R3 (ENSNVIG00000011985)	ENSNVIG00000011907	TESMIN (ENSNVIG00000011879)	CPT1A (ENSNVIG00000011801)	MRPL21 (ENSNVIG00000011766)	IGHMBP2 (ENSNVIG00000011737)	MRGPRD (ENSNVIG00000011721) #18	MRGPRF (ENSNVIG00000011699) #19	TPCN2 (ENSNVIG00000011621) #20	ENSNVIG00000011596 #22	LTO1 (ENSNVIG00000011554) #23	FGF19 (ENSNVIG00000011538) #24	FGF4 (ENSNVIG00000011535) #25	FGF3 (ENSNVIG00000011528) #26	ANO1 (ENSNVIG00000011432) #28	FADD (ENSNVIG00000011423)	PPFIA1 (ENSNVIG00000010291) #29	CTTN (ENSNVIG00000010121) #30	SHANK2 (ENSNVIG00000009980) #31	DHCR7 (ENSNVIG00000009959) #33	ENSNVIG00000009952 #34	ENSNVIG00000009913 #34
Ursidae	ANCESTRAL SPECIES	2	ENSGT00390000003049.f	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c.a #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b ##18	ENSGT00950000185387	ENSGT00940000159535	ENSGT00930000151070.d.b
Giant Panda	MODERN SPECIES	7	NDUFS8 (ENSAMEG00000001217)	TCIRG1 (ENSAMEG00000001230)	CHKA (ENSAMEG00000001272)	KMT5B (ENSAMEG00000001298)	ENSAMEG00000030515	LRP5 (ENSAMEG00000001320)	PPP6R3 (ENSAMEG00000008694)	GAL (ENSAMEG00000008690)	TESMIN (ENSAMEG00000008676)	CPT1A (ENSAMEG00000008595)	ENSAMEG00000008591	IGHMBP2 (ENSAMEG00000008568)	MRGPRD (ENSAMEG00000027443) #18	MRGPRF (ENSAMEG00000001626) #19	TPCN2 (ENSAMEG00000001559) #20	ENSAMEG00000001950 #22	ENSAMEG00000001983 #23	FGF19 (ENSAMEG00000029958) #24	FGF4 (ENSAMEG00000001992) #25	ENSAMEG00000025861 #26	ENSAMEG00000026287 #26	ANO1 (ENSAMEG00000007119) #28	FADD (ENSAMEG00000007199)	PPFIA1 (ENSAMEG00000007203) #29	CTTN (ENSAMEG00000007350) #30	SHANK2 (ENSAMEG00000007430) #31	DHCR7 (ENSAMEG00000007479) #33	ENSAMEG00000007497 #34	ENSAMEG00000019931 ##18	ENSAMEG00000007369	CARS1 (ENSAMEG00000005710)
Ursus	ANCESTRAL SPECIES	59														ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00950000185387	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b
American black bear	MODERN SPECIES	103														MRGPRF (ENSUAMG00000024797) #19	TPCN2 (ENSUAMG00000024798) #20	CCND1 (ENSUAMG00000024831) #22	LTO1 (ENSUAMG00000024832) #23	FGF19 (ENSUAMG00000024834) #24	FGF4 (ENSUAMG00000024835) #25	FGF3 (ENSUAMG00000024836) #26
Polar bear	MODERN SPECIES	221														MRGPRF (ENSUMAG00000007349) #19	TPCN2 (ENSUMAG00000007334) #20	ENSUMAG00000007327 #22	LTO1 (ENSUMAG00000007312) #23	FGF19 (ENSUMAG00000007302) #24	ENSUMAG00000007295 #25	ANO1 (ENSUMAG00000007174) #28	ENSUMAG00000007134	PPFIA1 (ENSUMAG00000007084) #29	CTTN (ENSUMAG00000007071) #30	ENSUMAG00000007048 #31	ENSUMAG00000007026 #31	DHCR7 (ENSUMAG00000007009) #33	ENSUMAG00000007007 #34	ENSUMAG00000007000 #34	ENSUMAG00000006998	OSBPL5 (ENSUMAG00000006967)	ENSUMAG00000006941
Canidae	ANCESTRAL SPECIES	13	ENSGT00390000003049.e.b	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535.d	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b ##18	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT00390000003049.e.b	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535.c	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b.c #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000163884 #32	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.a.a #36	ENSGT00940000159535	ENSGT00930000151070.d.b
Dog	MODERN SPECIES	9	TCIRG1 (ENSCAFG00845008465)	CHKA (ENSCAFG00845008304)	KMT5B (ENSCAFG00845008157)	ENSCAFG00845008076	LRP5 (ENSCAFG00845007778)	PPP6R3 (ENSCAFG00845007185)	GAL (ENSCAFG00845006857)	ENSCAFG00845006839	ENSCAFG00845006803	CPT1A (ENSCAFG00845006637)	ENSCAFG00845006503	IGHMBP2 (ENSCAFG00845006112)	MRGPRD (ENSCAFG00845006017) #18	MRGPRF (ENSCAFG00845005992) #19	TPCN2 (ENSCAFG00845005889) #20	CCND1 (ENSCAFG00845015348) #22	ENSCAFG00845015244 #23	FGF19 (ENSCAFG00845015136) #24	FGF4 (ENSCAFG00845015112) #25	FGF3 (ENSCAFG00845015080) #26	ANO1 (ENSCAFG00845014688) #28	FADD (ENSCAFG00845014582)	PPFIA1 (ENSCAFG00845014251) #29	CTTN (ENSCAFG00845013798) #30	SHANK2 (ENSCAFG00845013433) #31	ENSCAFG00845013273 #32	DHCR7 (ENSCAFG00845013203) #33	NADSYN1 (ENSCAFG00845012869) #34	MRGPRG (ENSCAFG00845012762) #36	OSBPL5 (ENSCAFG00845012537)	ENSCAFG00845012415
Dingo	MODERN SPECIES	69												IGHMBP2 (ENSCAFG00020015362)	MRGPRD (ENSCAFG00020015370) #18	MRGPRF (ENSCAFG00020015373) #19	TPCN2 (ENSCAFG00020015381) #20	CCND1 (ENSCAFG00020015396) #22	ENSCAFG00020015398 #23	FGF19 (ENSCAFG00020015401) #24	FGF4 (ENSCAFG00020015404) #25	FGF3 (ENSCAFG00020015407) #26	ANO1 (ENSCAFG00020015410) #28	FADD (ENSCAFG00020015414)	PPFIA1 (ENSCAFG00020015449) #29	CTTN (ENSCAFG00020016827) #30	SHANK2 (ENSCAFG00020016842) #31	DHCR7 (ENSCAFG00020016903) #33	NADSYN1 (ENSCAFG00020016999) #34	MRGPRG (ENSCAFG00020017170) #36	OSBPL5 (ENSCAFG00020017174)	ENSCAFG00020017184	CARS1 (ENSCAFG00020017188)
Red fox	MODERN SPECIES	49	ENSVVUG00000010174	TCIRG1 (ENSVVUG00000010160)	CHKA (ENSVVUG00000010123)	ENSVVUG00000010120	KMT5B (ENSVVUG00000010104)	CUNH11orf24 (ENSVVUG00000010101)	LRP5 (ENSVVUG00000005065)	PPP6R3 (ENSVVUG00000004914)	ENSVVUG00000004883	TESMIN (ENSVVUG00000004876)	CPT1A (ENSVVUG00000004839)	ENSVVUG00000004820	IGHMBP2 (ENSVVUG00000004811)	MRGPRF (ENSVVUG00000004804) #19	TPCN2 (ENSVVUG00000004753) #20	CCND1 (ENSVVUG00000004739) #22	ENSVVUG00000004719 #23	ENSVVUG00000004714	FGF19 (ENSVVUG00000004712) #24	FGF4 (ENSVVUG00000004705) #25	FGF3 (ENSVVUG00000004701) #26	ANO1 (ENSVVUG00000004627) #28	FADD (ENSVVUG00000004618)	PPFIA1 (ENSVVUG00000004563) #29	CTTN (ENSVVUG00000004541) #30	SHANK2 (ENSVVUG00000003559) #31	ENSVVUG00000003507 #32	DHCR7 (ENSVVUG00000003503) #33	NADSYN1 (ENSVVUG00000003498) #34	ENSVVUG00000003496 ##18	MRGPRG (ENSVVUG00000003491) #36
Felidae	ANCESTRAL SPECIES		ENSGT00940000155904.e.a	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b ##18	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a
Cat	MODERN SPECIES	241	TCIRG1 (ENSFCAG00000002995)	CHKA (ENSFCAG00000006219)	KMT5B (ENSFCAG00000009067)	ENSFCAG00000042941	LRP5 (ENSFCAG00000012666)	PPP6R3 (ENSFCAG00000005076)	GAL (ENSFCAG00000023993)	TESMIN (ENSFCAG00000025862)	CPT1A (ENSFCAG00000028060)	MRPL21 (ENSFCAG00000005779)	ENSFCAG00000049624	IGHMBP2 (ENSFCAG00000010879)	ENSFCAG00000052440	MRGPRF (ENSFCAG00000010885) #19	TPCN2 (ENSFCAG00000002792) #20	CCND1 (ENSFCAG00000008358) #22	LTO1 (ENSFCAG00000026606) #23	FGF19 (ENSFCAG00000027163) #24	FGF4 (ENSFCAG00000036639) #25	FGF3 (ENSFCAG00000043034) #26	ANO1 (ENSFCAG00000006735) #28	FADD (ENSFCAG00000042813)	PPFIA1 (ENSFCAG00000004765) #29	CTTN (ENSFCAG00000004767) #30	SHANK2 (ENSFCAG00000004768) #31	ENSFCAG00000050075	ENSFCAG00000050101	ENSFCAG00000031056 #32	DHCR7 (ENSFCAG00000004115) #33	NADSYN1 (ENSFCAG00000004116) #34	OSBPL5 (ENSFCAG00000006947)
Panthera	ANCESTRAL SPECIES	18	ENSGT00940000155904.e.a	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b ##18	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a
Panthera_a	ANCESTRAL SPECIES	18	ENSGT00940000155904.e.a	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b ##18	ENSGT00940000159535	ENSGT00930000151070.d.b	ENSGT00390000006347.a
leopard	MODERN SPECIES	64	NDUFS8 (ENSPPRG00000004781)	ENSPPRG00000004705	ENSPPRG00000004626	CHKA (ENSPPRG00000003923)	KMT5B (ENSPPRG00000002092)	ENSPPRG00000001623	LRP5 (ENSPPRG00000001607)	PPP6R3 (ENSPPRG00000000661)	GAL (ENSPPRG00000023433)	TESMIN (ENSPPRG00000023616)	CPT1A (ENSPPRG00000023904)	MRPL21 (ENSPPRG00000024109)	IGHMBP2 (ENSPPRG00000024194)	MRGPRF (ENSPPRG00000024308) #19	TPCN2 (ENSPPRG00000024406) #20	CCND1 (ENSPPRG00000024642) #22	LTO1 (ENSPPRG00000024675) #23	FGF19 (ENSPPRG00000024723) #24	FGF4 (ENSPPRG00000024731) #25	FGF3 (ENSPPRG00000024743) #26	ANO1 (ENSPPRG00000024762) #28	FADD (ENSPPRG00000024863)	PPFIA1 (ENSPPRG00000024878) #29	CTTN (ENSPPRG00000024935) #30	SHANK2 (ENSPPRG00000024978) #31	DHCR7 (ENSPPRG00000025025) #33	NADSYN1 (ENSPPRG00000025032) #34	OSBPL5 (ENSPPRG00000025061)	CARS1 (ENSPPRG00000022117)	ENSPPRG00000020522	NAP1L4 (ENSPPRG00000018679)
lion	MODERN SPECIES	56					KMT5B (ENSPLOG00000016932)	ENSPLOG00000017350	LRP5 (ENSPLOG00000017371)	PPP6R3 (ENSPLOG00000017745)	GAL (ENSPLOG00000019206)	TESMIN (ENSPLOG00000019256)	CPT1A (ENSPLOG00000019396)	ENSPLOG00000019447	IGHMBP2 (ENSPLOG00000019507)	MRGPRF (ENSPLOG00000019791) #19	TPCN2 (ENSPLOG00000019933) #20	CCND1 (ENSPLOG00000020328) #22	LTO1 (ENSPLOG00000020370) #23	FGF19 (ENSPLOG00000020417) #24	FGF4 (ENSPLOG00000020437) #25	FGF3 (ENSPLOG00000020465) #26
Tiger	MODERN SPECIES	461	ENSPTIG00000008967	ALDH3B1 (ENSPTIG00000003636)	NDUFS8 (ENSPTIG00000020944)	ENSPTIG00000020468	CHKA (ENSPTIG00000017888)	ENSPTIG00000014475	ENSPTIG00000013831	LRP5 (ENSPTIG00000009714)	PPP6R3 (ENSPTIG00000015409)	TESMIN (ENSPTIG00000011695)	CPT1A (ENSPTIG00000005864)	MRPL21 (ENSPTIG00000000955)	ENSPTIG00000020123	MRGPRF (ENSPTIG00000019368) #19	TPCN2 (ENSPTIG00000013302) #20	ENSPTIG00000012911 #22	LTO1 (ENSPTIG00000008634) #23	FGF19 (ENSPTIG00000007495) #24	ANO1 (ENSPTIG00000021763) #28	ENSPTIG00000007413	PPFIA1 (ENSPTIG00000016893) #29	CTTN (ENSPTIG00000013925) #30
Atlantogenata	ANCESTRAL SPECIES	17	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00940000170720	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31
Xenarthra	ANCESTRAL SPECIES	645																ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29
Armadillo	MODERN SPECIES	1642																CCND1 (ENSDNOG00000041164) #22	ENSDNOG00000012323 #23	FGF19 (ENSDNOG00000032646) #24	FGF4 (ENSDNOG00000036269) #25	ENSDNOG00000013431 #26	ANO1 (ENSDNOG00000042488) #28	FADD (ENSDNOG00000003249)	PPFIA1 (ENSDNOG00000005382) #29	ENSDNOG00000048894	CTTN (ENSDNOG00000019508) #30
Sloth	MODERN SPECIES	1018																ENSCHOG00000007162 #22
Afrotheria	ANCESTRAL SPECIES	9	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00940000170720	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25
Afrotheria_a	ANCESTRAL SPECIES	9	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00940000170720	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25
Elephant	MODERN SPECIES	532	TCIRG1 (ENSLAFG00000009983)	CHKA (ENSLAFG00000009985)	KMT5B (ENSLAFG00000006490)	ENSLAFG00000006321	LRP5 (ENSLAFG00000008300)	PPP6R3 (ENSLAFG00000008701)	ENSLAFG00000013266	TESMIN (ENSLAFG00000008438)	CPT1A (ENSLAFG00000018211)	MRPL21 (ENSLAFG00000003336)	ENSLAFG00000025815	IGHMBP2 (ENSLAFG00000022445)	MRGPRD (ENSLAFG00000010061) #18	MRGPRF (ENSLAFG00000007732) #19	ENSLAFG00000007978 #20	CCND1 (ENSLAFG00000007682) #22	LTO1 (ENSLAFG00000022073) #23	ENSLAFG00000029807 #24	FGF4 (ENSLAFG00000025574) #25
Hyrax	MODERN SPECIES	9682																CCND1 (ENSPCAG00000001048) #22
Tenrec	MODERN SPECIES	1234																ENSETEG00000002870 #22
Marsupialia	ANCESTRAL SPECIES	12	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b.h ##18	ENSGT01030000234639.A.b.a.b.a.a.b.g.a.a ##18	ENSGT01030000234639.A.b.a.b.a.a.b.g.b ##18	ENSGT01030000234639.A.b.a.b.a.a.a.b #35
Opossum	DUPLICATION
Opossum	MODERN SPECIES	4	NADSYN1 (ENSMODG00000007384) #34	ENSMODG00000007394	GAL (ENSMODG00000012764)	TESMIN (ENSMODG00000003549)	ENSMODG00000003995	ENSMODG00000046302	MRPL21 (ENSMODG00000045992)	IGHMBP2 (ENSMODG00000004040)	ENSMODG00000004049 #18	MRGPRF (ENSMODG00000004054) #19	ENSMODG00000047370 ##18	ENSMODG00000004073	ENSMODG00000029429 #20	ENSMODG00000049009	ENSMODG00000038046 #22	ENSMODG00000004080 #22	LTO1 (ENSMODG00000004085) #23	FGF19 (ENSMODG00000004093) #24	FGF4 (ENSMODG00000004108) #25	ENSMODG00000051588	FGF3 (ENSMODG00000004114) #26
Opossum	MODERN SPECIES	4	ENSMODG00000007370 ##18	NADSYN1 (ENSMODG00000007384) #34	ENSMODG00000007394	GAL (ENSMODG00000012764)	TESMIN (ENSMODG00000003549)	ENSMODG00000003995	ENSMODG00000046302	MRPL21 (ENSMODG00000045992)	IGHMBP2 (ENSMODG00000004040)	ENSMODG00000004049 #18	MRGPRF (ENSMODG00000004054) #19	ENSMODG00000047370 ##18	ENSMODG00000004073	ENSMODG00000029429 #20	ENSMODG00000049009	ENSMODG00000038046 #22	ENSMODG00000004080 #22	LTO1 (ENSMODG00000004085) #23	FGF19 (ENSMODG00000004093) #24	FGF4 (ENSMODG00000004108) #25	ENSMODG00000051588	FGF3 (ENSMODG00000004114) #26
Marsupialia_b	ANCESTRAL SPECIES	15	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b.h ##18	ENSGT01030000234639.A.b.a.b.a.a.b.g.a.a ##18	ENSGT01030000234639.A.b.a.b.a.a.b.g.b ##18	ENSGT01030000234639.A.b.a.b.a.a.a.b #35
Diprotodontia	ANCESTRAL SPECIES	27	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b.e	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT01030000234639.A.b.a.b.a.a.b.h ##18	ENSGT01030000234639.A.b.a.b.a.a.b.g.a.a ##18	ENSGT01030000234639.A.b.a.b.a.a.b.g.b ##18	ENSGT01030000234639.A.b.a.b.a.a.a.b #35
Diprotodontia_a	ANCESTRAL SPECIES	15	ENSGT00390000003049	ENSGT00950000182881.a.b.a.b	ENSGT00950000182939.a.b.b.e	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00390000005535	ENSGT00930000151035.a	ENSGT01030000234639.A.b.a.b.b #18	ENSGT01030000234639.A.b.a.a #19	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00390000000417.a.b #33	ENSGT00390000010152.m #34	ENSGT01030000234639.A.b.a.b.a.a.b.h ##18	ENSGT01030000234639.A.b.a.b.a.a.b.g.b.f ##18	ENSGT01030000234639.A.b.a.b.a.a.a.b #35	ENSGT01030000234639.A.b.a.b.a.a.a.a #36
Common wonbat	MODERN SPECIES	714	NDUFS8 (ENSVURG00010024656)	TCIRG1 (ENSVURG00010024654)	CHKA (ENSVURG00010024636)	KMT5B (ENSVURG00010024629)	ENSVURG00010024627	ENSVURG00010024625	PPP6R3 (ENSVURG00010024623)	ENSVURG00010024620	TESMIN (ENSVURG00010024616)	CPT1A (ENSVURG00010024607)	ENSVURG00010024596	IGHMBP2 (ENSVURG00010024593)	ENSVURG00010024590 #18	MRGPRF (ENSVURG00010024588) #19	TPCN2 (ENSVURG00010024582) #20	CCND1 (ENSVURG00010024576) #22	LTO1 (ENSVURG00010024575) #23	FGF19 (ENSVURG00010024573) #24	FGF4 (ENSVURG00010024570) #25	FGF3 (ENSVURG00010024564) #26	ANO1 (ENSVURG00010024551) #28	ENSVURG00010024549	PPFIA1 (ENSVURG00010024528) #29	CTTN (ENSVURG00010024517) #30	SHANK2 (ENSVURG00010024503) #31	DHCR7 (ENSVURG00010024484) #33	ENSVURG00010024475 #34
koala	MODERN SPECIES	209										ENSPCIG00000011060	IGHMBP2 (ENSPCIG00000011064)	ENSPCIG00000011072 #18	MRGPRF (ENSPCIG00000011075) #19	ENSPCIG00000034514 ##18	TPCN2 (ENSPCIG00000005636) #20	CCND1 (ENSPCIG00000009078) #22	ENSPCIG00000009077	FGF19 (ENSPCIG00000004914) #24	FGF4 (ENSPCIG00000009076) #25	FGF3 (ENSPCIG00000009053) #26	ANO1 (ENSPCIG00000009030) #28	ENSPCIG00000009028	ENSPCIG00000009025	PPFIA1 (ENSPCIG00000009009) #29	CTTN (ENSPCIG00000008932) #30	SHANK2 (ENSPCIG00000008921) #31	ENSPCIG00000035287 #31	DHCR7 (ENSPCIG00000019135) #33	ENSPCIG00000019137 #34	ENSPCIG00000019138 ##18	ENSPCIG00000018831 ##18
Wallaby	MODERN SPECIES	5638																ENSMEUG00000002218 #22
Tasmanian devil	MODERN SPECIES	5	PPP6R3 (ENSSHAG00000029610)	GAL (ENSSHAG00000005648)	TESMIN (ENSSHAG00000004539)	CPT1A (ENSSHAG00000003410)	ENSSHAG00000027996	IGHMBP2 (ENSSHAG00000001585)	ENSSHAG00000000304 #18	MRGPRF (ENSSHAG00000031299) #19	ENSSHAG00000001669 ##18	ENSSHAG00000032129 ##18	ENSSHAG00000029471 ##18	ENSSHAG00000000514 ##18	ENSSHAG00000000834 ##18	ENSSHAG00000002638 ##18	TPCN2 (ENSSHAG00000004691) #20	CCND1 (ENSSHAG00000032182) #22	LTO1 (ENSSHAG00000031356) #23	FGF19 (ENSSHAG00000031311) #24	ANO1 (ENSSHAG00000000720) #28	ENSSHAG00000031774	PPFIA1 (ENSSHAG00000006159) #29	CTTN (ENSSHAG00000027102) #30	SHANK2 (ENSSHAG00000031726) #31	ENSSHAG00000008066	DHCR7 (ENSSHAG00000025809) #33	ENSSHAG00000007467 #34	ENSSHAG00000007247 ##18	ENSSHAG00000006442 ##18	ENSSHAG00000022758 ##18	ENSSHAG00000005157 ##18	ENSSHAG00000031101 ##18
Platypus	MODERN SPECIES	14	ENSOANG00000043692	GAS2 (ENSOANG00000013127)	SLC17A6 (ENSOANG00000013126)	ANO5 (ENSOANG00000013125)	NELL1 (ENSOANG00000011284)	SLC6A5 (ENSOANG00000011285)	PRMT3 (ENSOANG00000011286)	HTATIP2 (ENSOANG00000011287)	DBX1 (ENSOANG00000037487)	NAV2 (ENSOANG00000011288)	E2F8 (ENSOANG00000011290)	CSRP3 (ENSOANG00000048468)	ENSOANG00000011292	NADSYN1 (ENSOANG00000011297) #34	TPCN2 (ENSOANG00000011298) #20	CCND1 (ENSOANG00000037670) #22	LTO1 (ENSOANG00000007415) #23	FGF19 (ENSOANG00000007414) #24	FGF4 (ENSOANG00000046993) #25	ENSOANG00000007412 #26	ANO1 (ENSOANG00000007411) #28	ENSOANG00000049034	PPFIA1 (ENSOANG00000007409) #29	CTTN (ENSOANG00000007408) #30	SHANK2 (ENSOANG00000007407) #31	ENSOANG00000007405	ENSOANG00000007404	FBXO3 (ENSOANG00000007403)	LMO2 (ENSOANG00000042666)	CAPRIN1 (ENSOANG00000007402)	NAT10 (ENSOANG00000007400)
Sauria	ANCESTRAL SPECIES	3	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199	ENSGT00940000153438.a
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361.l	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199	ENSGT00940000153438.a
Emydidae	ANCESTRAL SPECIES	2	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A.kc	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361.l	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199	ENSGT00940000153438.a
painted turtle	MODERN SPECIES	13	KCNA4 (ENSCPBG00000011682)	FSHB (ENSCPBG00000011683)	ARL14EP (ENSCPBG00000011685)	MPPED2 (ENSCPBG00000011688)	DCDC1 (ENSCPBG00000011700)	ENSCPBG00000011731	DNAJC24 (ENSCPBG00000011734)	IMMP1L (ENSCPBG00000011737)	ELP4 (ENSCPBG00000011741)	PAX6 (ENSCPBG00000011750)	RCN1 (ENSCPBG00000011765)	ENSCPBG00000011769	KIF18A (ENSCPBG00000011783)	METTL15 (ENSCPBG00000011793)	TPCN2 (ENSCPBG00000011800) #20	CCND1 (ENSCPBG00000011823) #22	LTO1 (ENSCPBG00000011826) #23	FGF19 (ENSCPBG00000011830) #24	FGF4 (ENSCPBG00000011837) #25	FGF3 (ENSCPBG00000011841) #26	ANO1 (ENSCPBG00000011970) #28	FADD (ENSCPBG00000012452)	PPFIA1 (ENSCPBG00000012457) #29	CTTN (ENSCPBG00000012477) #30	SHANK2 (ENSCPBG00000012482) #31	ENSCPBG00000012491	ENSCPBG00000012493	ENSCPBG00000012497	CD59 (ENSCPBG00000012499)	FBXO3 (ENSCPBG00000012502)	LMO2 (ENSCPBG00000012505)
Three-toed box turtle	MODERN SPECIES	40	SLC17A6 (ENSTMTG00000001054)	ANO5 (ENSTMTG00000001074)	NELL1 (ENSTMTG00000001201)	SLC6A5 (ENSTMTG00000001511)	PRMT3 (ENSTMTG00000001540)	HTATIP2 (ENSTMTG00000001558)	DBX1 (ENSTMTG00000001572)	NAV2 (ENSTMTG00000001914)	E2F8 (ENSTMTG00000004878)	CSRP3 (ENSTMTG00000004966)	ZDHHC13 (ENSTMTG00000004985)	DHCR7 (ENSTMTG00000005024) #33	NADSYN1 (ENSTMTG00000005047) #34	TPCN2 (ENSTMTG00000005101) #20	ENSTMTG00000005160	CCND1 (ENSTMTG00000005181) #22	LTO1 (ENSTMTG00000005195) #23	FGF19 (ENSTMTG00000005212) #24	FGF4 (ENSTMTG00000005231) #25	FGF3 (ENSTMTG00000005246) #26	ENSTMTG00000005270 #28	ENSTMTG00000005318 #28	FADD (ENSTMTG00000005325)	PPFIA1 (ENSTMTG00000005454) #29	CTTN (ENSTMTG00000007686) #30	SHANK2 (ENSTMTG00000007719) #31	ENSTMTG00000007782	ENSTMTG00000007801	ENSTMTG00000007815	CD59 (ENSTMTG00000007869)	ENSTMTG00000007897
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361.l	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199	ENSGT00940000153438.a
Goode s thornscrub tortoise	MODERN SPECIES	18	ENSGEVG00005000770	ANO5 (ENSGEVG00005000721)	NELL1 (ENSGEVG00005000573)	SLC6A5 (ENSGEVG00005000433)	PRMT3 (ENSGEVG00005000382)	HTATIP2 (ENSGEVG00005000355)	DBX1 (ENSGEVG00005000338)	ENSGEVG00005000287	ENSGEVG00005000202	E2F8 (ENSGEVG00005018626)	CSRP3 (ENSGEVG00005018598)	ZDHHC13 (ENSGEVG00005018497)	DHCR7 (ENSGEVG00005018381) #33	NADSYN1 (ENSGEVG00005018335) #34	TPCN2 (ENSGEVG00005018241) #20	CCND1 (ENSGEVG00005018203) #22	LTO1 (ENSGEVG00005018185) #23	FGF19 (ENSGEVG00005018136) #24	FGF4 (ENSGEVG00005018058) #25	FGF3 (ENSGEVG00005018030) #26	ANO1 (ENSGEVG00005017866) #28	FADD (ENSGEVG00005017827)	PPFIA1 (ENSGEVG00005017733) #29	CTTN (ENSGEVG00005017687) #30	ENSGEVG00005017488 #31	ENSGEVG00005017454 #31	ENSGEVG00005017411	ENSGEVG00005017369	CD59 (ENSGEVG00005017352)	FBXO3 (ENSGEVG00005017267)	LMO2 (ENSGEVG00005017244)
Abingdon island giant tortoise	MODERN SPECIES	6											CSRP3 (ENSCABG00000006722)	ZDHHC13 (ENSCABG00000006724)	DHCR7 (ENSCABG00000006729) #33	NADSYN1 (ENSCABG00000006733) #34	TPCN2 (ENSCABG00000006759) #20	CCND1 (ENSCABG00000006765) #22	LTO1 (ENSCABG00000006770) #23	DYNLT3 (ENSCABG00000006771)	ENSCABG00000006773	ENSCABG00000006775	XK (ENSCABG00000006777)	LANCL3 (ENSCABG00000006778)
Chinese turtle	MODERN SPECIES	157	LUZP2 (ENSPSIG00000003751)	GAS2 (ENSPSIG00000003747)	SLC17A6 (ENSPSIG00000016821)	ANO5 (ENSPSIG00000015336)	NELL1 (ENSPSIG00000014262)	SLC6A5 (ENSPSIG00000012480)	PRMT3 (ENSPSIG00000012339)	DBX1 (ENSPSIG00000012138)	NAV2 (ENSPSIG00000009374)	E2F8 (ENSPSIG00000008707)	CSRP3 (ENSPSIG00000008192)	ZDHHC13 (ENSPSIG00000005720)	DHCR7 (ENSPSIG00000016888) #33	NADSYN1 (ENSPSIG00000013537) #34	TPCN2 (ENSPSIG00000012409) #20	CCND1 (ENSPSIG00000010300) #22	LTO1 (ENSPSIG00000009754) #23	FGF19 (ENSPSIG00000009409) #24	FGF4 (ENSPSIG00000009214) #25	FGF3 (ENSPSIG00000008796) #26
Archosauria	ANCESTRAL SPECIES	5	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199
Australian saltwater crocodile	MODERN SPECIES	64	SLC17A6 (ENSCPRG00005007896)	ENSCPRG00005007899	ANO5 (ENSCPRG00005007913)	NELL1 (ENSCPRG00005008216)	SLC6A5 (ENSCPRG00005009448)	PRMT3 (ENSCPRG00005009456)	ENSCPRG00005009478	DBX1 (ENSCPRG00005009481)	NAV2 (ENSCPRG00005009511)	E2F8 (ENSCPRG00005009552)	ENSCPRG00005009559	ZDHHC13 (ENSCPRG00005009568)	DHCR7 (ENSCPRG00005009574) #33	NADSYN1 (ENSCPRG00005009582) #34	TPCN2 (ENSCPRG00005009596) #20	CCND1 (ENSCPRG00005009618) #22	ENSCPRG00005009620	FGF19 (ENSCPRG00005009629) #24	FGF4 (ENSCPRG00005009636) #25	FGF3 (ENSCPRG00005009656) #26	ANO1 (ENSCPRG00005009663) #28	FADD (ENSCPRG00005009695)	PPFIA1 (ENSCPRG00005009708) #29	CTTN (ENSCPRG00005009752) #30	SHANK2 (ENSCPRG00005009774) #31	ENSCPRG00005009814 ##31	ENSCPRG00005009819	ENSCPRG00005009826	ENSCPRG00005009843	FBXO3 (ENSCPRG00005009845)	LMO2 (ENSCPRG00005009849)
Aves	ANCESTRAL SPECIES	2	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199
African ostrich	MODERN SPECIES	1069	LUZP2 (ENSSCUG00000018548)	GAS2 (ENSSCUG00000018552)	SLC17A6 (ENSSCUG00000018554)	ANO5 (ENSSCUG00000018560)	NELL1 (ENSSCUG00000018571)	SLC6A5 (ENSSCUG00000018574)	PRMT3 (ENSSCUG00000018575)	DBX1 (ENSSCUG00000018578)	NAV2 (ENSSCUG00000018629)	E2F8 (ENSSCUG00000018693)	CSRP3 (ENSSCUG00000018696)	ZDHHC13 (ENSSCUG00000018700)	DHCR7 (ENSSCUG00000018702) #33	NADSYN1 (ENSSCUG00000018705) #34	TPCN2 (ENSSCUG00000018708) #20	CCND1 (ENSSCUG00000018718) #22	LTO1 (ENSSCUG00000018719) #23	FGF4 (ENSSCUG00000018721) #25	FGF3 (ENSSCUG00000018722) #26	ANO1 (ENSSCUG00000018728) #28	ENSSCUG00000018733	PPFIA1 (ENSSCUG00000018736) #29	CTTN (ENSSCUG00000018745) #30	SHANK2 (ENSSCUG00000018749) #31	ENSSCUG00000018751	ENSSCUG00000018752	CD59 (ENSSCUG00000018756)	FBXO3 (ENSSCUG00000018757)	LMO2 (ENSSCUG00000018758)	CAPRIN1 (ENSSCUG00000018759)	NAT10 (ENSSCUG00000018760)
Neognathae	ANCESTRAL SPECIES	4	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199
Passeriformes	ANCESTRAL SPECIES	25	ENSGT00390000006367.d	ENSGT00390000018603	ENSGT00390000007975.a	ENSGT00940000157523	ENSGT00950000182839.A.d	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000183194.a.b	ENSGT00940000163529	ENSGT00940000158780	ENSGT00390000000221.A	ENSGT00940000157223	ENSGT00940000155456	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199	ENSGT00940000153438.a
Great tit	MODERN SPECIES	25	PPFIBP2 (ENSPMJG00000008084)	CYB5R2 (ENSPMJG00000008082)	FAR1 (ENSPMJG00000008037)	PTH (ENSPMJG00000008035)	BTBD10 (ENSPMJG00000008028)	BMAL1 (ENSPMJG00000008016)	RASSF10 (ENSPMJG00000007953)	TEAD1 (ENSPMJG00000007946)	PARVA (ENSPMJG00000007907)	MICAL2 (ENSPMJG00000007837)	DKK3 (ENSPMJG00000007821)	USP47 (ENSPMJG00000007803)	DHCR7 (ENSPMJG00000007768) #33	NADSYN1 (ENSPMJG00000007755) #34	TPCN2 (ENSPMJG00000007718) #20	CCND1 (ENSPMJG00000007688) #22	LTO1 (ENSPMJG00000007687) #23	FGF19 (ENSPMJG00000007686) #24	FGF4 (ENSPMJG00000007684) #25	FGF3 (ENSPMJG00000007681) #26	ANO1 (ENSPMJG00000007664) #28	FADD (ENSPMJG00000007639)	PPFIA1 (ENSPMJG00000007603) #29	CTTN (ENSPMJG00000007574) #30	ENSPMJG00000007566	SHANK2 (ENSPMJG00000007558) #31	ENSPMJG00000007515	CD59 (ENSPMJG00000007514)	FBXO3 (ENSPMJG00000007496)	CAPRIN1 (ENSPMJG00000007495)	NAT10 (ENSPMJG00000007494)
Passeriformes_d	ANCESTRAL SPECIES	24	ENSGT00390000007975.a	ENSGT00940000157523	ENSGT00950000182839.A.d	ENSGT00950000182956.b.b.a.a.c.a.k.b	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000183194.a.b	ENSGT00940000163529	ENSGT00940000158780	ENSGT00390000000221.A.i	ENSGT00390000000221.A.j	ENSGT00940000157223	ENSGT00940000155456	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565.b #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199	ENSGT00940000153438.a
Flycatcher	MODERN SPECIES	24	ENSFALG00000025433 #18	ENSFALG00000027414 #18	ENSFALG00000015306 #18	ENSFALG00000015300 #18	ENSFALG00000004457	RAB3IL1 (ENSFALG00000004449)	ENSFALG00000004444	ENSFALG00000004442	ENSFALG00000004438	ENSFALG00000004419	ENSFALG00000004393	ENSFALG00000004367	DHCR7 (ENSFALG00000027432) #33	ENSFALG00000008807 #34	TPCN2 (ENSFALG00000008794) #20	CCND1 (ENSFALG00000001395) #22	LTO1 (ENSFALG00000027380) #23	FGF19 (ENSFALG00000028132) #24	FGF4 (ENSFALG00000023034) #25	FGF3 (ENSFALG00000001385) #26	ANO1 (ENSFALG00000001374) #28	FADD (ENSFALG00000026128)	PPFIA1 (ENSFALG00000001366) #29	CTTN (ENSFALG00000001357) #30	ENSFALG00000001347 #31	ENSFALG00000024507	FBXO3 (ENSFALG00000001317)	LMO2 (ENSFALG00000001311)	CAPRIN1 (ENSFALG00000001291)	NAT10 (ENSFALG00000001264)	LUZP2 (ENSFALG00000001067)
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00390000006367.d	ENSGT00390000018603	ENSGT00390000007975.a	ENSGT00940000157523	ENSGT00950000182956.b.b.a.a.c.a.l	ENSGT00950000183194.a.b	ENSGT00940000163529	ENSGT00940000158780	ENSGT00390000000221.A.i	ENSGT00390000000221.A.j	ENSGT00940000157223	ENSGT00940000155456	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565.b #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199	ENSGT00940000153438.a
Medium ground finch	MODERN SPECIES	105	BTBD10 (ENSGFOG00000010627)	BMAL1 (ENSGFOG00000010620)	ENSGFOG00000010618	TEAD1 (ENSGFOG00000010592)	PARVA (ENSGFOG00000010221)	ENSGFOG00000010175	MICAL2 (ENSGFOG00000010142)	DKK3 (ENSGFOG00000010128)	USP47 (ENSGFOG00000010116)	ENSGFOG00000010109	ENSGFOG00000010104	ENSGFOG00000010095	DHCR7 (ENSGFOG00000010089) #33	NADSYN1 (ENSGFOG00000010073) #34	TPCN2 (ENSGFOG00000010031) #20	CCND1 (ENSGFOG00000010018) #22	LTO1 (ENSGFOG00000010010) #23	FGF19 (ENSGFOG00000010004) #24	FGF4 (ENSGFOG00000009997) #25	FGF3 (ENSGFOG00000009991) #26	ANO1 (ENSGFOG00000009973) #28	FADD (ENSGFOG00000009959)	PPFIA1 (ENSGFOG00000009159) #29	CTTN (ENSGFOG00000009092) #30	ENSGFOG00000009079 #31	ENSGFOG00000009069 #31	CD59 (ENSGFOG00000009059)	FBXO3 (ENSGFOG00000009052)	LMO2 (ENSGFOG00000009039)	CAPRIN1 (ENSGFOG00000008899)	NAT10 (ENSGFOG00000005455)
Passeroidea	ANCESTRAL SPECIES	1													ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565.b #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199	ENSGT00940000153438.a
Zebra finch	MODERN SPECIES	27	MICAL2 (ENSTGUG00000016051)	DKK3 (ENSTGUG00000016109)	USP47 (ENSTGUG00000016131)	GALNT18 (ENSTGUG00000016192)	ZDHHC13 (ENSTGUG00000015883)	CSRP3 (ENSTGUG00000015869)	E2F8 (ENSTGUG00000015857)	NAV2 (ENSTGUG00000015800)	ENSTGUG00000023608	DBX1 (ENSTGUG00000015791)	PRMT3 (ENSTGUG00000015757)	SLC6A5 (ENSTGUG00000015718)	DHCR7 (ENSTGUG00000005254) #33	NADSYN1 (ENSTGUG00000005275) #34	TPCN2 (ENSTGUG00000005328) #20	CCND1 (ENSTGUG00000005350) #22	LTO1 (ENSTGUG00000024666) #23	FGF19 (ENSTGUG00000019746) #24	FGF4 (ENSTGUG00000019156) #25	FGF3 (ENSTGUG00000005379) #26	ANO1 (ENSTGUG00000005385) #28	FADD (ENSTGUG00000029237)	PPFIA1 (ENSTGUG00000005461) #29	CTTN (ENSTGUG00000005520) #30	ENSTGUG00000028814	SHANK2 (ENSTGUG00000005571) #31	ENSTGUG00000028508	ENSTGUG00000025115	FBXO3 (ENSTGUG00000005600)	LMO2 (ENSTGUG00000005633)	CAPRIN1 (ENSTGUG00000024587)
Common canary	DUPLICATION
Common canary	MODERN SPECIES	45	QSER1 (ENSSCAG00000007912)	DEPDC7 (ENSSCAG00000007915)	TCP11L1 (ENSSCAG00000007919)	CSTF3 (ENSSCAG00000007929)	HIPK3 (ENSSCAG00000007942)	KIAA1549L (ENSSCAG00000007949)	SPON1 (ENSSCAG00000007979)	SYT9 (ENSSCAG00000007985)	OLFML1 (ENSSCAG00000007990)	PPFIBP2 (ENSSCAG00000008004)	CYB5R2 (ENSSCAG00000008040)	FAR1 (ENSSCAG00000008134)	DHCR7 (ENSSCAG00000008143) #33	NADSYN1 (ENSSCAG00000008149) #34	TPCN2 (ENSSCAG00000008186) #20	ENSSCAG00000008240 #22	LTO1 (ENSSCAG00000008248) #23	FGF19 (ENSSCAG00000008256) #24	ANO1 (ENSSCAG00000008269) #28	FADD (ENSSCAG00000008309)	PPFIA1 (ENSSCAG00000008327) #29	CTTN (ENSSCAG00000008353) #30	ENSSCAG00000008366	SHANK2 (ENSSCAG00000008391) #31	ENSSCAG00000008438	CD59 (ENSSCAG00000008444)	FBXO3 (ENSSCAG00000008450)	LMO2 (ENSSCAG00000008456)	CAPRIN1 (ENSSCAG00000008500)	NAT10 (ENSSCAG00000008894)	ENSSCAG00000008910
Common canary	MODERN SPECIES	705																ENSSCAG00000002043 #22
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT00940000155755	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199
Golden eagle	MODERN SPECIES	7	FANCF (ENSACCG00020010950)	SLC17A6 (ENSACCG00020010956)	ANO5 (ENSACCG00020011008)	NELL1 (ENSACCG00020011074)	SLC6A5 (ENSACCG00020011107)	PRMT3 (ENSACCG00020011129)	DBX1 (ENSACCG00020011145)	NAV2 (ENSACCG00020012419)	ENSACCG00020013387	E2F8 (ENSACCG00020013481)	CSRP3 (ENSACCG00020013533)	ZDHHC13 (ENSACCG00020013560)	DHCR7 (ENSACCG00020013601) #33	NADSYN1 (ENSACCG00020013624) #34	TPCN2 (ENSACCG00020013652) #20	CCND1 (ENSACCG00020013681) #22	LTO1 (ENSACCG00020013692) #23	FGF19 (ENSACCG00020013709) #24	FGF4 (ENSACCG00020013725) #25	FGF3 (ENSACCG00020013742) #26	ANO1 (ENSACCG00020013843) #28	FADD (ENSACCG00020013886)	PPFIA1 (ENSACCG00020013987) #29	CTTN (ENSACCG00020014072) #30	ENSACCG00020014090	ENSACCG00020014112 #31	ENSACCG00020014182 #31	ENSACCG00020014203	ENSACCG00020014239	CD59 (ENSACCG00020014266)	FBXO3 (ENSACCG00020014282)
Kakapo	MODERN SPECIES	21	GAS2 (ENSSHBG00005014830)	FANCF (ENSSHBG00005014840)	SLC17A6 (ENSSHBG00005014846)	ANO5 (ENSSHBG00005014862)	NELL1 (ENSSHBG00005014894)	SLC6A5 (ENSSHBG00005014909)	PRMT3 (ENSSHBG00005014924)	DBX1 (ENSSHBG00005014932)	NAV2 (ENSSHBG00005015084)	E2F8 (ENSSHBG00005015651)	CSRP3 (ENSSHBG00005015674)	ZDHHC13 (ENSSHBG00005015698)	DHCR7 (ENSSHBG00005015703) #33	NADSYN1 (ENSSHBG00005015719) #34	TPCN2 (ENSSHBG00005015810) #20	CCND1 (ENSSHBG00005016264) #22	LTO1 (ENSSHBG00005016276) #23	FGF19 (ENSSHBG00005016282) #24	FGF4 (ENSSHBG00005016290) #25	FGF3 (ENSSHBG00005016296) #26	ANO1 (ENSSHBG00005016323) #28	LRRC4C (ENSSHBG00005016412)	ENSSHBG00005016420	ENSSHBG00005016423	RAG1 (ENSSHBG00005016430)	ENSSHBG00005016434	ENSSHBG00005016435	ROGDI (ENSSHBG00005016437)	GLYR1 (ENSSHBG00005000522)	MRPS34 (ENSSHBG00005001465)	MAPK8IP3 (ENSSHBG00005001493)
Galloanserae	ANCESTRAL SPECIES	4	ENSGT01050000245471	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199
Anatidae	ANCESTRAL SPECIES	50					ENSGT00390000009899.a.d	ENSGT00390000009663	ENSGT00940000161379	ENSGT01060000248595.b.a.b.a	ENSGT00950000182990.a.a.b.a.b.b.a.a	ENSGT00950000182990.a.a.b.a.b.b.a.b.b.b	ENSGT00950000182990.a.a.b.a.b.b.a.b.b.a	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199
Pink-footed goose	MODERN SPECIES	39					PPP6R3 (ENSABRG00000019930)	ENSABRG00000019923	TESMIN (ENSABRG00000019921)	CPT1A (ENSABRG00000019913)	ENSABRG00000019905	ENSABRG00000019900	ENSABRG00000019898	ZDHHC13 (ENSABRG00000019892)	DHCR7 (ENSABRG00000019889) #33	NADSYN1 (ENSABRG00000019877) #34	TPCN2 (ENSABRG00000019875) #20	CCND1 (ENSABRG00000019865) #22	LTO1 (ENSABRG00000019863) #23	FGF19 (ENSABRG00000019861) #24	ENSABRG00000019858 #25	FGF3 (ENSABRG00000019857) #26	ANO1 (ENSABRG00000019808) #28	FADD (ENSABRG00000019800)	PPFIA1 (ENSABRG00000018499) #29	CTTN (ENSABRG00000017864) #30	ENSABRG00000017832	SHANK2 (ENSABRG00000017831) #31	ENSABRG00000017827	ENSABRG00000017826	CD59 (ENSABRG00000017825)	FBXO3 (ENSABRG00000017824)	LMO2 (ENSABRG00000017822)
Duck	DUPLICATION
Duck	MODERN SPECIES	23	POLR2L (ENSAPLG00000023236)	TSPAN4 (ENSAPLG00000003602)	CHID1 (ENSAPLG00000003133)	AP2A2 (ENSAPLG00000016325)	MUC6 (ENSAPLG00000015143)	PPP6R3 (ENSAPLG00000015481)	ENSAPLG00000015918	CPT1A (ENSAPLG00000015970)	ENSAPLG00000001151	ENSAPLG00000017572	ENSAPLG00000002427	ZDHHC13 (ENSAPLG00000002449)	DHCR7 (ENSAPLG00000002980) #33	NADSYN1 (ENSAPLG00000003062) #34	TPCN2 (ENSAPLG00000003454) #20	ENSAPLG00000023856 #22	LTO1 (ENSAPLG00000004024) #23	FGF19 (ENSAPLG00000004286) #24	FGF4 (ENSAPLG00000022440) #25	FGF3 (ENSAPLG00000004435) #26	ANO1 (ENSAPLG00000004437) #28	FADD (ENSAPLG00000005051)	PPFIA1 (ENSAPLG00000005058) #29	CTTN (ENSAPLG00000005914) #30	ENSAPLG00000028380	ENSAPLG00000006385 #31	ENSAPLG00000027417 #31	ENSAPLG00000006513	ENSAPLG00000020680	CD59 (ENSAPLG00000025499)	FBXO3 (ENSAPLG00000006774)
Duck	MODERN SPECIES	3531																CCND1 (ENSAPLG00000019954) #22
Duck	MODERN SPECIES	4175																ENSAPLG00000023542 #22
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00940000154495.b.b	ENSGT00390000003068	ENSGT00940000158505	ENSGT00940000157622	ENSGT00440000039859	ENSGT01020000230351.B	ENSGT00940000157117	ENSGT00940000171312	ENSGT00940000154184.B	ENSGT01050000244888.b.b.a.a	ENSGT00940000161412	ENSGT00730000111073.j	ENSGT00730000111073.i	ENSGT00940000155073	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00940000154495.b.b	ENSGT00390000003068	ENSGT00940000157112.c	ENSGT00940000157622	ENSGT00440000039859	ENSGT01020000230351.B	ENSGT00940000157117	ENSGT00940000171312	ENSGT00940000154184.B	ENSGT01050000244888.b.b.a.a	ENSGT00940000161412	ENSGT00730000111073.j	ENSGT00730000111073.i	ENSGT01040000242930	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT01030000235608	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199
Turkey	MODERN SPECIES	25	ENSMGAG00000017617	ENSMGAG00000018292	TIMM10 (ENSMGAG00000015788)	SLC43A3 (ENSMGAG00000016702)	P2RX3 (ENSMGAG00000009810)	SSRP1 (ENSMGAG00000009772)	ENSMGAG00000020618	ENSMGAG00000009833	APLNR (ENSMGAG00000022363)	LRRC55 (ENSMGAG00000009842)	ENSMGAG00000009844	ENSMGAG00000009861	ENSMGAG00000022033	TPCN2 (ENSMGAG00000009876) #20	ENSMGAG00000018780	CCND1 (ENSMGAG00000009911) #22	LTO1 (ENSMGAG00000009922) #23	FGF19 (ENSMGAG00000009924) #24	FGF4 (ENSMGAG00000009926) #25	ANO1 (ENSMGAG00000009938) #28	FADD (ENSMGAG00000009995)	PPFIA1 (ENSMGAG00000009999) #29	CTTN (ENSMGAG00000010050) #30	ENSMGAG00000021040	ENSMGAG00000010103 #31	ENSMGAG00000010111 #31	ENSMGAG00000019805	ENSMGAG00000010159	ENSMGAG00000010176	CD59 (ENSMGAG00000010188)	FBXO3 (ENSMGAG00000010146)
Chicken	MODERN SPECIES	34	ENSGALG00010026316	ENSGALG00010026329	TIMM10 (ENSGALG00010026344)	ENSGALG00010026354	SLC43A3 (ENSGALG00010026393)	PGR2/3 (ENSGALG00010026984)	P2RX3 (ENSGALG00010026422)	SSRP1 (ENSGALG00010026457)	TNKS1BP1 (ENSGALG00010026484)	APLNR (ENSGALG00010026507)	LRRC55 (ENSGALG00010026523)	ENSGALG00010025344	INCENP (ENSGALG00010025358)	ENSGALG00010025375	TPCN2 (ENSGALG00010025386) #20	CCND1 (ENSGALG00010025419) #22	ORAOV1 (ENSGALG00010025470) #23	FGF19 (ENSGALG00010025480) #24	FGF4 (ENSGALG00010025483) #25	FGF3 (ENSGALG00010025487) #26	ANO1 (ENSGALG00010025538) #28	FADD (ENSGALG00010025338)	PPFIA1 (ENSGALG00010024757) #29	CTTN (ENSGALG00010024767) #30	ENSGALG00010024777	SHANK2 (ENSGALG00010024791) #31	ACTBL2 (ENSGALG00010024796)	ENSGALG00010024799	CD59 (ENSGALG00010024802)	FBXO3 (ENSGALG00010024818)	LMO2 (ENSGALG00010024846)
Japanese quail	MODERN SPECIES	23	YPEL4 (ENSCJPG00005017608)	SERPING1 (ENSCJPG00005017605)	ENSCJPG00005017604	TIMM10 (ENSCJPG00005017603)	ENSCJPG00005017589	RTN4RL2 (ENSCJPG00005017588)	SLC43A3 (ENSCJPG00005017587)	ENSCJPG00005017585	SSRP1 (ENSCJPG00005017509)	ENSCJPG00005017508	APLNR (ENSCJPG00005017507)	LRRC55 (ENSCJPG00005017506)	ENSCJPG00005017505	ENSCJPG00005017504	TPCN2 (ENSCJPG00005017503) #20	CCND1 (ENSCJPG00005017497) #22	ENSCJPG00005017496	FGF19 (ENSCJPG00005017495) #24	FGF4 (ENSCJPG00005017494) #25	FGF3 (ENSCJPG00005017493) #26	ANO1 (ENSCJPG00005016846) #28	FADD (ENSCJPG00005016845)	PPFIA1 (ENSCJPG00005016091) #29	CTTN (ENSCJPG00005016082) #30	SHANK2 (ENSCJPG00005015584) #31	ENSCJPG00005015583	ENSCJPG00005015582	CD59 (ENSCJPG00005015580)	FBXO3 (ENSCJPG00005015579)	LMO2 (ENSCJPG00005015578)	CAPRIN1 (ENSCJPG00005015577)
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00940000166897	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b	ENSGT00390000016309	ENSGT00940000153571.b
tuatara	MODERN SPECIES	277										E2F8 (ENSSPUG00000012083)	CSRP3 (ENSSPUG00000012299)	ZDHHC13 (ENSSPUG00000012318)	DHCR7 (ENSSPUG00000012347) #33	ENSSPUG00000012371 #34	ENSSPUG00000012397	CCND1 (ENSSPUG00000012410) #22	LTO1 (ENSSPUG00000012427) #23	FGF19 (ENSSPUG00000012438) #24	FGF4 (ENSSPUG00000012450) #25	FGF3 (ENSSPUG00000012460) #26	ANO1 (ENSSPUG00000012476) #28	FADD (ENSSPUG00000012511)	PPFIA1 (ENSSPUG00000012523) #29	CTTN (ENSSPUG00000012593) #30	ENSSPUG00000012704 #31	ENSSPUG00000012784	ENSSPUG00000012794 #31
Episquamata	ANCESTRAL SPECIES		ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00940000166897	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b	ENSGT00390000016309	ENSGT00940000153571.b
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00390000005623	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00730000111007.a.b	ENSGT00940000157530.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199	ENSGT00940000153438.a
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000167680	ENSGT00940000155755	ENSGT00940000155891	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b.vc.b #31	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199.e	ENSGT00940000153438.a	ENSGT00390000009140
Indian cobra	MODERN SPECIES		GAS2 (ENSNNAG00000016599)	SLC17A6 (ENSNNAG00000016611)	ANO5 (ENSNNAG00000016633)	ENSNNAG00000004241	NELL1 (ENSNNAG00000004310)	SLC6A5 (ENSNNAG00000004935)	PRMT3 (ENSNNAG00000005046)	DBX1 (ENSNNAG00000005086)	NAV2 (ENSNNAG00000005112)	CSRP3 (ENSNNAG00000005272)	ZDHHC13 (ENSNNAG00000005301)	ENSNNAG00000005365 #33	ENSNNAG00000005578 #33	NADSYN1 (ENSNNAG00000005666) #34	TPCN2 (ENSNNAG00000006411) #20	CCND1 (ENSNNAG00000006496) #22	ENSNNAG00000006511	FGF19 (ENSNNAG00000006529) #24	FGF4 (ENSNNAG00000006539) #25	FGF3 (ENSNNAG00000006555) #26	ANO1 (ENSNNAG00000006590) #28	FADD (ENSNNAG00000006633)	PPFIA1 (ENSNNAG00000006663) #29	CTTN (ENSNNAG00000006882) #30	SHANK2 (ENSNNAG00000006944) #31	ENSNNAG00000007168	CD59 (ENSNNAG00000007176)	FBXO3 (ENSNNAG00000007197)	LMO2 (ENSNNAG00000007220)	CAPRIN1 (ENSNNAG00000007267)	NAT10 (ENSNNAG00000007401)
Elapidae_a	ANCESTRAL SPECIES	4	ENSGT00940000167680	ENSGT00940000155755	ENSGT00940000155891	ENSGT00940000155692.d	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b.vc.b #31	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199.e	ENSGT00940000153438.a	ENSGT00390000009140
Acanthophiinae	ANCESTRAL SPECIES	6	ENSGT00940000167680	ENSGT00940000155755	ENSGT00940000155891	ENSGT00940000155692.d	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b.vc.b #31	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199.e	ENSGT00940000153438.a	ENSGT00390000009140
Eastern brown snake	MODERN SPECIES	1	LUZP2 (ENSPTXG00000003365)	ENSPTXG00000003366	GAS2 (ENSPTXG00000003367)	SLC17A6 (ENSPTXG00000003368)	ANO5 (ENSPTXG00000003381)	NELL1 (ENSPTXG00000003719)	SLC6A5 (ENSPTXG00000003742)	PRMT3 (ENSPTXG00000003744)	DBX1 (ENSPTXG00000003745)	NAV2 (ENSPTXG00000003752)	CSRP3 (ENSPTXG00000004519)	ZDHHC13 (ENSPTXG00000004521)	DHCR7 (ENSPTXG00000004524) #33	NADSYN1 (ENSPTXG00000004535) #34	TPCN2 (ENSPTXG00000004711) #20	CCND1 (ENSPTXG00000004712) #22	ENSPTXG00000004713	FGF19 (ENSPTXG00000004714) #24	FGF4 (ENSPTXG00000004715) #25	FGF3 (ENSPTXG00000004717) #26	ANO1 (ENSPTXG00000004727) #28	ENSPTXG00000007334	FADD (ENSPTXG00000007337)	PPFIA1 (ENSPTXG00000007340) #29	CTTN (ENSPTXG00000007342) #30	SHANK2 (ENSPTXG00000007344) #31	ENSPTXG00000007345	CD59 (ENSPTXG00000007347)	FBXO3 (ENSPTXG00000007348)	LMO2 (ENSPTXG00000007349)	CAPRIN1 (ENSPTXG00000007350)
Mainland tiger snake	MODERN SPECIES	9	ENSNSUG00000011683	ENSNSUG00000011682	GAS2 (ENSNSUG00000011681)	SLC17A6 (ENSNSUG00000011680)	ENSNSUG00000011679	NELL1 (ENSNSUG00000011668)	SLC6A5 (ENSNSUG00000011667)	ENSNSUG00000011666	PRMT3 (ENSNSUG00000011641)	DBX1 (ENSNSUG00000011639)	NAV2 (ENSNSUG00000011291)	CSRP3 (ENSNSUG00000011268)	ZDHHC13 (ENSNSUG00000011202)	DHCR7 (ENSNSUG00000011199) #33	NADSYN1 (ENSNSUG00000011018) #34	CCND1 (ENSNSUG00000011011) #22	ENSNSUG00000011000	FGF19 (ENSNSUG00000010998) #24	FGF4 (ENSNSUG00000010993) #25	FGF3 (ENSNSUG00000010990) #26	ANO1 (ENSNSUG00000010983) #28	FADD (ENSNSUG00000010978)	PPFIA1 (ENSNSUG00000010311) #29	CTTN (ENSNSUG00000010306) #30	SHANK2 (ENSNSUG00000010257) #31	ENSNSUG00000010256	CD59 (ENSNSUG00000010255)	FBXO3 (ENSNSUG00000010252)	ENSNSUG00000010250	CAPRIN1 (ENSNSUG00000009334)	NAT10 (ENSNSUG00000009284)
Blue-lipped sea krait	MODERN SPECIES	9129																CCND1 (ENSLLTG00000011958) #22	ENSLLTG00000011964	FGF19 (ENSLLTG00000011985) #24	FGF4 (ENSLLTG00000011993) #25	FGF3 (ENSLLTG00000012001) #26
Lizard	MODERN SPECIES		ENSACAG00000044855	ENSACAG00000040452	ENSACAG00000041485	NAV2 (ENSACAG00000015634)	ENSACAG00000042429	E2F8 (ENSACAG00000015743)	CSRP3 (ENSACAG00000015769)	ZDHHC13 (ENSACAG00000028725)	ENSACAG00000015826 #33	ENSACAG00000044329	ENSACAG00000015847 #34	TPCN2 (ENSACAG00000015933) #20	ENSACAG00000040695	ENSACAG00000042512	ENSACAG00000034646	CCND1 (ENSACAG00000016001) #22	LTO1 (ENSACAG00000016039) #23	FGF19 (ENSACAG00000016055) #24	FGF4 (ENSACAG00000036069) #25	FGF3 (ENSACAG00000040483) #26	ENSACAG00000016081 #28	ENSACAG00000036690	ENSACAG00000044506	SLC1A2 (ENSACAG00000004365)	ENSACAG00000041619	ENSACAG00000004544	TRIM44 (ENSACAG00000028675)	ENSACAG00000044094	ENSACAG00000042401	ENSACAG00000039043	ENSACAG00000038756
Laterata	ANCESTRAL SPECIES	2	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00390000016309	ENSGT00940000153571.b	ENSGT00940000160199	ENSGT00940000153438.a
Argentine black and white tegu	MODERN SPECIES	3	SLC17A6 (ENSSMRG00000003122)	ENSSMRG00000003131	ANO5 (ENSSMRG00000003134)	NELL1 (ENSSMRG00000003314)	SLC6A5 (ENSSMRG00000003765)	PRMT3 (ENSSMRG00000003784)	DBX1 (ENSSMRG00000003811)	NAV2 (ENSSMRG00000003861)	E2F8 (ENSSMRG00000003932)	CSRP3 (ENSSMRG00000003940)	ZDHHC13 (ENSSMRG00000003941)	DHCR7 (ENSSMRG00000003977) #33	NADSYN1 (ENSSMRG00000003982) #34	ENSSMRG00000004015	TPCN2 (ENSSMRG00000004016) #20	CCND1 (ENSSMRG00000004053) #22	ENSSMRG00000004057	FGF19 (ENSSMRG00000004061) #24	FGF4 (ENSSMRG00000004065) #25	FGF3 (ENSSMRG00000004069) #26	ENSSMRG00000004072	ANO1 (ENSSMRG00000004087) #28	FADD (ENSSMRG00000004117)	PPFIA1 (ENSSMRG00000004131) #29	CTTN (ENSSMRG00000004171) #30	SHANK2 (ENSSMRG00000004195) #31	ENSSMRG00000004210	ENSSMRG00000004212	ENSSMRG00000004220	CD59 (ENSSMRG00000004233)	FBXO3 (ENSSMRG00000004236)
Common wall lizard	MODERN SPECIES		ANO5 (ENSPMRG00000007058)	NELL1 (ENSPMRG00000006954)	SLC6A5 (ENSPMRG00000006889)	ENSPMRG00000006880	DBX1 (ENSPMRG00000006874)	ENSPMRG00000006869	NAV2 (ENSPMRG00000006703)	ENSPMRG00000006654	E2F8 (ENSPMRG00000006649)	ENSPMRG00000006644	ZDHHC13 (ENSPMRG00000006612)	ENSPMRG00000006593 #33	NADSYN1 (ENSPMRG00000006580) #34	ENSPMRG00000006570 #33	TPCN2 (ENSPMRG00000006421) #20	CCND1 (ENSPMRG00000006384) #22	LTO1 (ENSPMRG00000006379) #23	FGF19 (ENSPMRG00000006374) #24	ENSPMRG00000006367	FGF4 (ENSPMRG00000006363) #25	FGF3 (ENSPMRG00000006361) #26	ANO1 (ENSPMRG00000006308) #28	FADD (ENSPMRG00000006296)	PPFIA1 (ENSPMRG00000003817) #29	CTTN (ENSPMRG00000003359) #30	SHANK2 (ENSPMRG00000002826) #31	ENSPMRG00000002685	ENSPMRG00000002678	ENSPMRG00000002671	ENSPMRG00000002665	ENSPMRG00000002662
Anura	ANCESTRAL SPECIES	85														ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816 #22	ENSGT00940000166897	ENSGT00390000009426 #23	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000179816	ENSGT00730000111007.a.b	ENSGT00940000157530.b	ENSGT00940000153571.b	ENSGT00940000160199
Leishan spiny toad	MODERN SPECIES	1	CREB3L1 (ENSLLEG00000023855)	PHF21A (ENSLLEG00000023594)	LARGE2 (ENSLLEG00000023346)	PEX16 (ENSLLEG00000023185)	MAPK8IP1 (ENSLLEG00000022952)	CRY2 (ENSLLEG00000022391)	SLC35C1 (ENSLLEG00000022256)	CHST1 (ENSLLEG00000022223)	ENSLLEG00000022188	ENSLLEG00000022055	ENSLLEG00000021985	ENSLLEG00000021771	NADSYN1 (ENSLLEG00000021615) #34	TPCN2 (ENSLLEG00000021215) #20	ENSLLEG00000021177	CCND1 (ENSLLEG00000021050) #22	ENSLLEG00000020984	FGF19 (ENSLLEG00000020932) #24	FGF4 (ENSLLEG00000020868) #25	ENSLLEG00000020854	FGF3 (ENSLLEG00000020810) #26	ENSLLEG00000020792	ENSLLEG00000020760	ENSLLEG00000020746	ANO1 (ENSLLEG00000019003) #28	ENSLLEG00000018889	ENSLLEG00000018856	ENSLLEG00000018838	ENSLLEG00000018813	ENSLLEG00000018803	PPFIA1 (ENSLLEG00000018429) #29
Frog	MODERN SPECIES	4	pex16 (ENSXETG00000001027)	mapk8ip1 (ENSXETG00000001025)	cry2 (ENSXETG00000001023)	slc35c1 (ENSXETG00000036219)	chst1 (ENSXETG00000001015)	astl2a (ENSXETG00000040205)	astl2b (ENSXETG00000025500)	tll1 (ENSXETG00000000956)	astl2d.1 (ENSXETG00000048123)	ENSXETG00000040697	nadsyn1 (ENSXETG00000031760) #20	astl2f (ENSXETG00000044182)	astl2g (ENSXETG00000000918)	ENSXETG00000044016	ENSXETG00000044323	ccnd1 (ENSXETG00000045695) #22	fadd (ENSXETG00000045881)	ppfia1 (ENSXETG00000003798) #29	cttn (ENSXETG00000003797) #30	shank2 (ENSXETG00000003796) #31	ENSXETG00000041714	XB1001290 [provisional:golgb1] (ENSXETG00000037228)	guca1bl (ENSXETG00000003788)	ENSXETG00000044678	fbxo3 (ENSXETG00000003785)	tfip11 (ENSXETG00000003784)	abtb2 (ENSXETG00000003783)	nat10 (ENSXETG00000003782)	caprin1 (ENSXETG00000003985)	lmo2 (ENSXETG00000042510)	gh2 (ENSXETG00000003984)
Coelacanth	MODERN SPECIES	523									E2F8 (ENSLACG00000016113)	CSRP3 (ENSLACG00000016057)	ZDHHC13 (ENSLACG00000015963)	ENSLACG00000015905	DHCR7 (ENSLACG00000015729) #33	NADSYN1 (ENSLACG00000015568) #34	TPCN2 (ENSLACG00000015494) #20	CCND1 (ENSLACG00000013180) #22	lto1 (ENSLACG00000012966)	FGF19 (ENSLACG00000012846) #24	FGF4 (ENSLACG00000012527) #25	FGF3 (ENSLACG00000012317) #26	zgc:153993 (ENSLACG00000011168)	ANO1 (ENSLACG00000009098) #28	FADD (ENSLACG00000008763)	PPFIA1 (ENSLACG00000007439) #29	CTTN (ENSLACG00000006679) #30	shank2b (ENSLACG00000004766) #31
Actinopterygii	DUPLICATION
Actinopterygii	DUPLICATION
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000157816.a.a #22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000157816.a.a #22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000157816.a.a #22
Clupeocephala	ANCESTRAL SPECIES	675															ENSGT00390000014700.b.a.a	ENSGT00940000157816.a.a #22	ENSGT00940000158825.d #25
Euteleosteomorpha	ANCESTRAL SPECIES	437														ENSGT01010000222986	ENSGT00390000014700.b.a.a	ENSGT00940000157816.a.a #22	ENSGT00940000158825.d #25
Protacanthopterygii	ANCESTRAL SPECIES	10	ENSGT00950000182926.a	ENSGT00940000153901.a.a.a	ENSGT00940000154709.a.b.b.c	ENSGT00940000155504.k.a	ENSGT00940000156246.c.a	ENSGT00940000154738.a.q	ENSGT00940000155419.c.a.g	ENSGT00940000155915.a	ENSGT00950000183062.a.a.b.b.b	ENSGT00940000156242.c.a	ENSGT00390000013995.b.b.k.a.c	ENSGT00390000016228.a.b	ENSGT00940000157529.i.a	ENSGT01010000222986	ENSGT00390000014700.b.a.a	ENSGT00940000157816.a.a #22	ENSGT00940000158825.d #25
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	982															ENSGT00940000159763.o #20	ENSGT00940000157816.a.a.a #22	ENSGT00940000158825.d.a #25	ENSGT00940000161128.f.b #26	ENSGT00940000157182.g.a.f #28	ENSGT00940000153561.b.a.a.b.y.a.a.b.a.b #31
Huchen	MODERN SPECIES	2748																CCND1 (ENSHHUG00000052407) #22	FGF4 (ENSHHUG00000052404) #25	FGF3 (ENSHHUG00000052403) #26	ENSHHUG00000052402	ANO1 (ENSHHUG00000052360) #28
Salmoninae_a	ANCESTRAL SPECIES	65	ENSGT01030000234588.b.b.b.a.a.b.a	ENSGT00950000182926.a.o	ENSGT00940000154709.a.b.b.c.c	ENSGT00940000155504.k.a.c	ENSGT00940000156246.c.a.c	ENSGT00940000154738.a.q.c	ENSGT00940000155419.c.a.h	ENSGT00940000155915.a.d	ENSGT00950000183062.a.a.b.b.b.f	ENSGT00390000013995.b.b.k.a.c.a	ENSGT00390000016228.a.b.b	ENSGT00940000157529.i.a.f	ENSGT01010000222986.a	ENSGT00390000014700.b.a.a	ENSGT00940000159763.o #20	ENSGT00940000157816.a.a.a #22	ENSGT00940000158825.d.a #25	ENSGT00940000161128.f.b #26	ENSGT00940000157182.g.a.f #28	ENSGT00940000153561.b.a.a.b.y.a.a.a #31	ENSGT00940000164361.j	ENSGT00390000013899.b.a	ENSGT00940000161262.a.m.b
Oncorhynchus	ANCESTRAL SPECIES	10	ENSGT00950000182926.a.o	ENSGT00940000154709.a.b.b.c.c	ENSGT00940000155504.k.a.c	ENSGT00940000156246.c.a.c	ENSGT00940000154738.a.q.c	ENSGT00940000155419.c.a.h	ENSGT00940000155915.a.d	ENSGT01080000258033.b	ENSGT00950000183062.a.a.b.b.b.f	ENSGT00390000013995.b.b.k.a.c.a	ENSGT00390000016228.a.b.b	ENSGT00940000157529.i.a.f	ENSGT01010000222986.a	ENSGT00390000014700.b.a.a	ENSGT00940000159763.o #20	ENSGT00940000157816.a.a.a #22	ENSGT00940000158825.d.a #25	ENSGT00940000161128.f.b #26	ENSGT00940000157182.g.a.f #28	ENSGT00940000153561.b.a.a.b.y.a.a.b.a.a #31	ENSGT00940000164361.j	ENSGT00390000013899.b.a	ENSGT00940000161262.a.m.b	ENSGT00940000159073	ENSGT00940000157089.A.a	ENSGT00390000012935.b	ENSGT00940000161814.g.b.g.d.b.a	ENSGT00390000014757.w.a	ENSGT00940000154963.h	ENSGT00940000158980.tb	ENSGT00940000155352.eb.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT01030000234588.b.b.b.a.a.b.a	ENSGT00950000182926.a.o	ENSGT00940000154709.a.b.b.c.c	ENSGT00940000155504.k.a.c	ENSGT00940000156246.c.a.c	ENSGT00940000154738.a.q.c	ENSGT00940000155419.c.a.h	ENSGT00940000155915.a.d	ENSGT01080000258033.b	ENSGT00950000183062.a.a.b.b.b.f	ENSGT00390000013995.b.b.k.a.c.a	ENSGT00390000016228.a.b.b	ENSGT00940000157529.i.a.f	ENSGT01010000222986.a	ENSGT00390000014700.b.a.a	ENSGT00940000157816.a.a.a #22	ENSGT00940000158825.d.a #25	ENSGT00940000161128.f.b #26	ENSGT00940000157182.g.a.f #28	ENSGT00940000153561.b.a.a.b.y.a.a.b.a.a #31	ENSGT00940000164361.j	ENSGT00390000013899.b.a	ENSGT00940000161262.a.m.b	ENSGT00940000159073	ENSGT00940000157089.A.a	ENSGT00390000012935.b	ENSGT00940000161814.g.b.g.d.b.a	ENSGT00390000014757.w.a	ENSGT00940000154963.h	ENSGT00940000158980.tb	ENSGT00940000155352.eb.a.b
Coho salmon	MODERN SPECIES	14	ENSOKIG00005015928	dnm1l (ENSOKIG00005015703)	ENSOKIG00005015144	NRCAM (ENSOKIG00005012642)	CNTN1 (ENSOKIG00005011606)	ENSOKIG00005011460	PDZRN4 (ENSOKIG00005011445)	ENSOKIG00005011437	YAF2 (ENSOKIG00005011425)	PPHLN1 (ENSOKIG00005011412)	PRICKLE1 (ENSOKIG00005011404)	ENSOKIG00005011399	ENSOKIG00005011389	ric8a (ENSOKIG00005011374)	ENSOKIG00005011368	CCND1 (ENSOKIG00005011363) #22	FGF4 (ENSOKIG00005011358) #25	FGF3 (ENSOKIG00005011347) #26	ANO1 (ENSOKIG00005008421) #28	ENSOKIG00005008235	shank2b (ENSOKIG00005006901) #31	acte1 (ENSOKIG00005006792)	zgc:101566 (ENSOKIG00005006780)	chst1 (ENSOKIG00005006766)	cry2 (ENSOKIG00005006611)	mapk8ip1a (ENSOKIG00005006549)	cstpp1 (ENSOKIG00005006528)	ENSOKIG00005006521	ckap5 (ENSOKIG00005006293)	SLC6A5 (ENSOKIG00005006111)	aurkb (ENSOKIG00005050742)
Chinook salmon	MODERN SPECIES	10	dnm1l (ENSOTSG00005026295)	dnajb9a (ENSOTSG00005026291)	ENSOTSG00005026288	ENSOTSG00005026285	ENSOTSG00005024758	NRCAM (ENSOTSG00005024072)	PDZRN4 (ENSOTSG00005024063)	YAF2 (ENSOTSG00005024058)	PPHLN1 (ENSOTSG00005024056)	ENSOTSG00005024054	prickle1a (ENSOTSG00005024053)	ENSOTSG00005024052	tmem179ba (ENSOTSG00005024045)	ENSOTSG00005024043	ric8a (ENSOTSG00005024041)	CCND1 (ENSOTSG00005024040) #22	FGF4 (ENSOTSG00005024038) #25	FGF3 (ENSOTSG00005024037) #26	ANO1 (ENSOTSG00005023871) #28	ENSOTSG00005023868	ENSOTSG00005023866 #31	ENSOTSG00005023865	ENSOTSG00005023863 #31	acte1 (ENSOTSG00005023862)	zgc:101566 (ENSOTSG00005023859)	chst1 (ENSOTSG00005023857)	cry2 (ENSOTSG00005023855)	mapk8ip1a (ENSOTSG00005023669)	ENSOTSG00005023663	ckap5 (ENSOTSG00005023644)	SLC6A5 (ENSOTSG00005023510)
Rainbow trout	MODERN SPECIES	11	tnnt2d (ENSOMYG00000008532)	dnm1l (ENSOMYG00000008421)	dnajb9a (ENSOMYG00000063751)	ENSOMYG00000008104	ENSOMYG00000057517	NRCAM (ENSOMYG00000007983)	CNTN1 (ENSOMYG00000007478)	ENSOMYG00000064508	PDZRN4 (ENSOMYG00000006668)	YAF2 (ENSOMYG00000006598)	PPHLN1 (ENSOMYG00000006575)	PRICKLE1 (ENSOMYG00000006515)	ENSOMYG00000006496	ENSOMYG00000006457	ENSOMYG00000054271 #20	CCND1 (ENSOMYG00000052324) #22	FGF4 (ENSOMYG00000068115) #25	FGF3 (ENSOMYG00000006256) #26	ENSOMYG00000004758 #28	ENSOMYG00000049965	shank2b (ENSOMYG00000003266) #31	acte1 (ENSOMYG00000003165)	ENSOMYG00000003104	ENSOMYG00000071093	zgc:101566 (ENSOMYG00000060894)	chst1 (ENSOMYG00000003098)	ENSOMYG00000019767	cry2 (ENSOMYG00000003086)	mapk8ip1a (ENSOMYG00000003064)	ENSOMYG00000067368	ckap5 (ENSOMYG00000002898)
Salmo	ANCESTRAL SPECIES	60	ENSGT01030000234588.b.b.b.a.a.b.a	ENSGT00950000182926.a.o	ENSGT00940000154709.a.b.b.c.c	ENSGT00940000155504.k.a.c	ENSGT00940000156246.c.a.c	ENSGT00940000154738.a.q.c	ENSGT00940000155419.c.a.h	ENSGT00940000155915.a.d	ENSGT00950000183062.a.a.b.b.b.f	ENSGT00390000013995.b.b.k.a.c.a	ENSGT00940000168203.a.a	ENSGT00940000157529.i.a.f	ENSGT01010000222986.a	ENSGT00390000014700.b.a.a	ENSGT00940000159763.o #20	ENSGT00940000157816.a.a.a #22	ENSGT00940000158825.d.a #25	ENSGT00940000161128.f.b #26	ENSGT00940000157182.g.a.f #28	ENSGT00940000153561.b.a.a.b.y.a.a.a #31	ENSGT00940000164361.j	ENSGT00390000013899.b.a	ENSGT00940000161262.a.m.b
River trout	MODERN SPECIES	37	tnni4b.2 (ENSSTUG00000051247)	bpgm (ENSSTUG00000051246)	tnnt2d (ENSSTUG00000051245)	dnm1l (ENSSTUG00000051244)	ENSSTUG00000051243	NRCAM (ENSSTUG00000051155)	CNTN1 (ENSSTUG00000051085)	ENSSTUG00000051080	ENSSTUG00000051079	YAF2 (ENSSTUG00000051078)	ENSSTUG00000051077	PRICKLE1 (ENSSTUG00000051076)	ENSSTUG00000051075	ric8a (ENSSTUG00000051074)	ENSSTUG00000051073 #20	CCND1 (ENSSTUG00000051072) #22	FGF4 (ENSSTUG00000051071) #25	FGF3 (ENSSTUG00000051069) #26	ENSSTUG00000051068	ANO1 (ENSSTUG00000051016) #28	shank2b (ENSSTUG00000050981) #31	acte1 (ENSSTUG00000050974)	zgc:101566 (ENSSTUG00000050971)	ENSSTUG00000050970	chst1 (ENSSTUG00000050969)	cry2 (ENSSTUG00000050961)	mapk8ip1a (ENSSTUG00000050959)	ENSSTUG00000050958	ENSSTUG00000050957	ckap5 (ENSSTUG00000050030)	SLC6A5 (ENSSTUG00000049921)
Atlantic salmon	MODERN SPECIES	1	tnnt2d (ENSSSAG00000079466)	dnm1l (ENSSSAG00000078961)	dnajb9a (ENSSSAG00000101678)	ENSSSAG00000078845	NRCAM (ENSSSAG00000077488)	CNTN1 (ENSSSAG00000075823)	ENSSSAG00000085342	YAF2 (ENSSSAG00000121965)	ENSSSAG00000075773	ENSSSAG00000075776	ENSSSAG00000075764	ric8a (ENSSSAG00000075692)	TPCN2 (ENSSSAG00000075685) #20	TPCN2 (ENSSSAG00000119661) #20	TPCN2 (ENSSSAG00000101120) #20	CCND1 (ENSSSAG00000087603) #22	FGF4 (ENSSSAG00000093671) #25	FGF3 (ENSSSAG00000075678) #26	ENSSSAG00000075598 #28	ENSSSAG00000101276	shank2b (ENSSSAG00000075440) #31	acte1 (ENSSSAG00000075402)	zgc:101566 (ENSSSAG00000103913)	chst1 (ENSSSAG00000086094)	cry2 (ENSSSAG00000073888)	mapk8ip1a (ENSSSAG00000100515)	ENSSSAG00000095041	ENSSSAG00000117557	ENSSSAG00000101114	ENSSSAG00000108207	ckap5 (ENSSSAG00000064318)
Salmoninae	ANCESTRAL SPECIES	543																ENSGT00940000157816.a.a.b #22	ENSGT00940000158825.d.b #25	ENSGT00940000161128.f.a #26	ENSGT00940000157182.g.a.e #28	ENSGT00940000153561.b.a.a.b.y.a.b #31	ENSGT00940000164361.i	ENSGT00390000013899.b.b	ENSGT00940000161262.a.m.a	ENSGT00940000157089.A.b	ENSGT00390000012935	ENSGT00390000014757.w.b	ENSGT00940000158980.ub	ENSGT00390000015016.d	ENSGT00940000155352.fb	ENSGT00940000160121.d	ENSGT00940000166219.g.b
Salmoninae_a	ANCESTRAL SPECIES	83	ENSGT00950000182926.a.p	ENSGT00940000153901.a.a.a	ENSGT00940000154709.a.b.b.c.d	ENSGT00940000155504.k.a.d	ENSGT00940000156246.c.a.d	ENSGT00940000154738.a.q.d	ENSGT00940000155419.c.a.g.b	ENSGT00940000155915.a.c	ENSGT00950000183062.a.a.b.b.b.e	ENSGT00940000156242.c.a	ENSGT00390000013995.b.b.k.a.c.b	ENSGT00940000168203.a.b	ENSGT00390000016228.a.b.a	ENSGT00940000157529.i.a.e	ENSGT01010000222986.b	ENSGT00940000157816.a.a.b #22	ENSGT00940000158825.d.b #25	ENSGT00940000161128.f.a #26	ENSGT00940000157182.g.a.e #28	ENSGT00940000153561.b.a.a.b.y.a.b #31	ENSGT00940000164361.i	ENSGT00390000013899.b.b	ENSGT00940000161262.a.m.a	ENSGT00940000157089.A.b	ENSGT00390000012935	ENSGT00390000014757.w.b	ENSGT00940000158980.ub	ENSGT00390000015016.d	ENSGT00940000155352.fb	ENSGT00940000160121.d	ENSGT00940000166219.g.b
Salmo	ANCESTRAL SPECIES	65	ENSGT01030000234588.b.b.b.a.b.h	ENSGT00950000182926.a.p	ENSGT00940000153901.a.a.a	ENSGT00940000154709.a.b.b.c.d	ENSGT00940000155504.k.a.d	ENSGT00940000156246.c.a.d	ENSGT00940000154738.a.q.d	ENSGT00940000155419.c.a.g.b	ENSGT00940000155915.a.c	ENSGT00950000183062.a.a.b.b.b.e	ENSGT00940000156242.c.a	ENSGT00390000013995.b.b.k.a.c.b	ENSGT00940000168203.a.b	ENSGT00940000157529.i.a.e	ENSGT01010000222986.b	ENSGT00940000157816.a.a.b #22	ENSGT00940000158825.d.b #25	ENSGT00940000161128.f.a #26	ENSGT00940000157182.g.a.e #28	ENSGT00940000153561.b.a.a.b.y.a.b #31	ENSGT00940000164361.i	ENSGT00390000013899.b.b	ENSGT00940000161262.a.m.a	ENSGT00940000157089.A.b	ENSGT00390000012935	ENSGT00390000014757.w.b	ENSGT00940000158980.ub	ENSGT00390000015016.d	ENSGT00940000155352.fb	ENSGT00940000160121.d	ENSGT00940000166219.g.b
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000096808	ENSSSAG00000120638	ENSSSAG00000071759	pmge (ENSSSAG00000071766)	ENSSSAG00000100045	dnm1l (ENSSSAG00000071783)	dnajb9a (ENSSSAG00000121518)	ENSSSAG00000071934	CNTN1 (ENSSSAG00000072055)	PDZRN4 (ENSSSAG00000072923)	ENSSSAG00000072928	GXYLT1 (ENSSSAG00000103557)	ENSSSAG00000005997	YAF2 (ENSSSAG00000072939)	ENSSSAG00000006020	ccnd1 (ENSSSAG00000006058) #22	ENSSSAG00000006067 #25	fgf3 (ENSSSAG00000006079) #26	ENSSSAG00000006181 #28	shank2b (ENSSSAG00000006751) #31	acte1 (ENSSSAG00000008245)	zgc:101566 (ENSSSAG00000008253)	chst1 (ENSSSAG00000100456)	ENSSSAG00000109680	mapk8ip1a (ENSSSAG00000008260)	cstpp1 (ENSSSAG00000008267)	ckap5 (ENSSSAG00000008344)	ENSSSAG00000064106	ENSSSAG00000098760	ENSSSAG00000008563	ENSSSAG00000008569
River trout	MODERN SPECIES	8	ENSSTUG00000038528	bpgm (ENSSTUG00000038520)	ENSSTUG00000038517	tnnt2d (ENSSTUG00000038509)	dnm1l (ENSSTUG00000038282)	dnajb9a (ENSSTUG00000038242)	ENSSTUG00000038210	NRCAM (ENSSTUG00000036375)	CNTN1 (ENSSTUG00000031778)	ENSSTUG00000031557	GXYLT1 (ENSSTUG00000031535)	YAF2 (ENSSTUG00000031524)	ENSSTUG00000031512	prickle1a (ENSSTUG00000031503)	ENSSTUG00000031490	CCND1 (ENSSTUG00000031480) #22	FGF4 (ENSSTUG00000031452) #25	FGF3 (ENSSTUG00000031430) #26	ANO1 (ENSSTUG00000028543) #28	shank2b (ENSSTUG00000027793) #31	acte1 (ENSSTUG00000027737)	zgc:101566 (ENSSTUG00000027727)	chst1 (ENSSTUG00000027719)	mapk8ip1a (ENSSTUG00000027678)	cstpp1 (ENSSTUG00000027626)	ckap5 (ENSSTUG00000027275)	aurkb (ENSSTUG00000027210)	borcs5 (ENSSTUG00000027193)	MGAT4C (ENSSTUG00000027188)	ENSSTUG00000027177	ENSSTUG00000027005
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT01030000234588.b.b.b.a.b.h	ENSGT00950000182926.a.p	ENSGT00940000153901.a.a.a	ENSGT00940000155504.k.a.d	ENSGT00940000156246.c.a.d	ENSGT00940000154738.a.q.d	ENSGT00940000155419.c.a.g.b	ENSGT00940000155915.a.c	ENSGT00950000183062.a.a.b.b.b.e	ENSGT00940000156242.c.a	ENSGT00390000013995.b.b.k.a.c.b	ENSGT00940000168203.a.b	ENSGT00390000016228.a.b.a	ENSGT00940000157529.i.a.e	ENSGT01010000222986.b	ENSGT00940000157816.a.a.b #22	ENSGT00940000158825.d.b #25	ENSGT00940000161128.f.a #26	ENSGT00940000157182.g.a.e #28	ENSGT00940000153561.b.a.a.b.y.a.b #31	ENSGT00940000164361.i	ENSGT00390000013899.b.b	ENSGT00940000161262.a.m.a	ENSGT00940000157089.A.b	ENSGT00390000012935.a	ENSGT00390000014757.w.b	ENSGT00940000158980.ub	ENSGT00390000015016.d	ENSGT00940000155352.fb	ENSGT00940000160121.d	ENSGT00940000166219.g.b
Rainbow trout	MODERN SPECIES		ENSOMYG00000044617	dnm1l (ENSOMYG00000043734)	dnajb9a (ENSOMYG00000043552)	ENSOMYG00000014596	ENSOMYG00000035634	ENSOMYG00000056734	ENSOMYG00000056490	CNTN1 (ENSOMYG00000029641)	ENSOMYG00000070317	PDZRN4 (ENSOMYG00000073658)	GXYLT1 (ENSOMYG00000028164)	YAF2 (ENSOMYG00000028116)	ENSOMYG00000028084	ENSOMYG00000028069	ENSOMYG00000028050	CCND1 (ENSOMYG00000028003) #22	FGF4 (ENSOMYG00000027980) #25	FGF3 (ENSOMYG00000027975) #26	ENSOMYG00000026454 #28	ENSOMYG00000025903 #31	zgc:101566 (ENSOMYG00000054832)	chst1 (ENSOMYG00000030524)	ENSOMYG00000050566	ENSOMYG00000076148	mapk8ip1a (ENSOMYG00000030487)	ENSOMYG00000057618	cstpp1 (ENSOMYG00000030477)	ckap5 (ENSOMYG00000030222)	ENSOMYG00000029850	ENSOMYG00000029832	ENSOMYG00000077342
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT01030000234588.b.b.b.a.b.h	ENSGT00950000182926.a.p	ENSGT00940000153901.a.a.a	ENSGT00940000155504.k.a.d	ENSGT00940000156246.c.a.d	ENSGT00940000154738.a.q.d	ENSGT00940000155419.c.a.g.b	ENSGT00940000155915.a.c	ENSGT00950000183062.a.a.b.b.b.e	ENSGT00940000156242.c.a	ENSGT00390000013995.b.b.k.a.c.b	ENSGT00940000168203.a.b	ENSGT00390000016228.a.b.a	ENSGT00940000157529.i.a.e	ENSGT01010000222986.b	ENSGT00940000157816.a.a.b #22	ENSGT00940000158825.d.b #25	ENSGT00940000161128.f.a #26	ENSGT00940000157182.g.a.e #28	ENSGT00940000153561.b.a.a.b.y.a.b #31	ENSGT00940000164361.i	ENSGT00390000013899.b.b	ENSGT00940000161262.a.m.a	ENSGT00940000157089.A.b	ENSGT00390000012935.a	ENSGT00390000014757.w.b	ENSGT00940000158980.ub	ENSGT00390000015016.d	ENSGT00940000155352.fb	ENSGT00940000160121.d	ENSGT00940000166219.g.b
Coho salmon	MODERN SPECIES	24	CNOT4 (ENSOKIG00005045649)	ENSOKIG00005045633	bpgm (ENSOKIG00005045626)	ENSOKIG00005045619	dnm1l (ENSOKIG00005045495)	dnajb9a (ENSOKIG00005045466)	ENSOKIG00005045433	NRCAM (ENSOKIG00005027503)	CNTN1 (ENSOKIG00005025528)	PDZRN4 (ENSOKIG00005025425)	GXYLT1 (ENSOKIG00005025409)	YAF2 (ENSOKIG00005025382)	PPHLN1 (ENSOKIG00005025369)	prickle1a (ENSOKIG00005025356)	ENSOKIG00005025336	CCND1 (ENSOKIG00005025315) #22	FGF4 (ENSOKIG00005025287) #25	FGF3 (ENSOKIG00005025256) #26	ANO1 (ENSOKIG00005022403) #28	shank2b (ENSOKIG00005022198) #31	acte1 (ENSOKIG00005022160)	zgc:101566 (ENSOKIG00005022150)	chst1 (ENSOKIG00005022140)	mapk8ip1a (ENSOKIG00005022123)	cstpp1 (ENSOKIG00005022089)	ckap5 (ENSOKIG00005021670)	AURKB (ENSOKIG00005021484)	BORCS5 (ENSOKIG00005021449)	ENSOKIG00005021432	MGAT4C (ENSOKIG00005021429)	ENSOKIG00005021399
Chinook salmon	MODERN SPECIES	30	ENSOTSG00005045594	ENSOTSG00005045592	dnm1l (ENSOTSG00005045205)	dnajb9a (ENSOTSG00005045204)	ENSOTSG00005045202	NRCAM (ENSOTSG00005034696)	MAGI2 (ENSOTSG00005034662)	CNTN1 (ENSOTSG00005028937)	PDZRN4 (ENSOTSG00005043630)	ENSOTSG00005043629	GXYLT1 (ENSOTSG00005043628)	YAF2 (ENSOTSG00005043627)	ENSOTSG00005043626	prickle1a (ENSOTSG00005043625)	ENSOTSG00005043624	CCND1 (ENSOTSG00005043621) #22	FGF4 (ENSOTSG00005043619) #25	FGF3 (ENSOTSG00005043618) #26	ANO1 (ENSOTSG00005039975) #28	shank2b (ENSOTSG00005039897) #31	acte1 (ENSOTSG00005039896)	zgc:101566 (ENSOTSG00005039895)	chst1 (ENSOTSG00005039894)	mapk8ip1a (ENSOTSG00005039893)	cstpp1 (ENSOTSG00005039892)	ckap5 (ENSOTSG00005039737)	borcs5 (ENSOTSG00005039730)	aurkb (ENSOTSG00005039726)	MGAT4C (ENSOTSG00005039724)	ENSOTSG00005039721	ENSOTSG00005039718
Huchen	MODERN SPECIES	524														ENSHHUG00000033709	ENSHHUG00000033713	CCND1 (ENSHHUG00000033715) #22	FGF4 (ENSHHUG00000033729) #25	FGF3 (ENSHHUG00000033740) #26	ANO1 (ENSHHUG00000033763) #28	shank2b (ENSHHUG00000034384) #31	ENSHHUG00000034548	acte1 (ENSHHUG00000034575)	zgc:101566 (ENSHHUG00000035688)	chst1 (ENSHHUG00000035691)
Acanthomorphata	ANCESTRAL SPECIES	298								ENSGT00940000168375	ENSGT00940000165046.a	ENSGT00390000009663	ENSGT00390000009899.a.d	ENSGT00940000156574.C	ENSGT00940000170837	ENSGT01010000222986	ENSGT00390000014700.b.a.a	ENSGT00940000157816.a.a #22
Euacanthomorphacea	ANCESTRAL SPECIES	30	ENSGT00940000154876.a.b.a	ENSGT00940000154876.a.b.b	ENSGT00950000182983.B.b	ENSGT00940000166216	ENSGT00940000160936	ENSGT00940000155645.i.a	ENSGT00950000183211.a.a.b	ENSGT00980000202268	ENSGT00940000163363	ENSGT00390000009663	ENSGT00390000009899.a.d	ENSGT00940000156574.C	ENSGT00940000170837	ENSGT01010000222986	ENSGT00390000014700.b.a.a	ENSGT00940000157816.a.a #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000157816.a.a #22
Percomorphaceae_B	ANCESTRAL SPECIES	5				ENSGT00940000157182.g.a #28	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000165046.a	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b
Ovalentaria	ANCESTRAL SPECIES	34				ENSGT00940000157182.g.a #28	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000165046.a	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Ovalentaria_B	ANCESTRAL SPECIES	53			ENSGT00940000161262.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000165046.a	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Cichlidae	ANCESTRAL SPECIES	72	ENSGT00940000163363	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00940000161262.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c	ENSGT00940000164795	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c	ENSGT00940000164795	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00730000111190	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000165785	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c	ENSGT00940000164795	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00730000111190	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734.a
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c	ENSGT00940000164795	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00730000111190	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734.a
Burton s mouthbrooder	MODERN SPECIES	427	zgc:158868 (ENSHBUG00000004976)	bcar1 (ENSHBUG00000005041)	ENSHBUG00000005057	CHST1 (ENSHBUG00000005078)	ENSHBUG00000005120	ENSHBUG00000005133	ripor1 (ENSHBUG00000005258)	ctcf (ENSHBUG00000005300)	carmil2 (ENSHBUG00000005370)	ric8a (ENSHBUG00000005440)	ppp6r3 (ENSHBUG00000005469)	tmem170a (ENSHBUG00000005485)	ENSHBUG00000005495	ENSHBUG00000005506	lrp5 (ENSHBUG00000005660)	CCND1 (ENSHBUG00000005679) #22	PRR5L (ENSHBUG00000005691)	commd9 (ENSHBUG00000005699)	cart3 (ENSHBUG00000005716)	zgc:114188 (ENSHBUG00000005728)	zgc:193812 (ENSHBUG00000005746)	ENSHBUG00000005768
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c	ENSGT00940000164795	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00730000111190	ENSGT00940000170707.b	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734.a
P. nyererei	MODERN SPECIES	503	bcar1 (ENSPNYG00000018808)	ENSPNYG00000018778	CHST1 (ENSPNYG00000018759)	ENSPNYG00000018748	ENSPNYG00000018726	ENSPNYG00000018716	ripor1 (ENSPNYG00000018637)	ctcf (ENSPNYG00000018607)	carmil2 (ENSPNYG00000018519)	ric8a (ENSPNYG00000018320)	ppp6r3 (ENSPNYG00000018285)	tmem170a (ENSPNYG00000018267)	ENSPNYG00000018256	ENSPNYG00000018236	lrp5 (ENSPNYG00000018131)	CCND1 (ENSPNYG00000017992) #22	PRR5L (ENSPNYG00000017964)	COMMD9 (ENSPNYG00000017898)	zgc:114188 (ENSPNYG00000017858)	cart3 (ENSPNYG00000017849)	zgc:193812 (ENSPNYG00000017826)	ENSPNYG00000017785	ANPEP (ENSPNYG00000017646)	anpepb.1 (ENSPNYG00000017288)	zc3h18 (ENSPNYG00000017186)	ENSPNYG00000017147	utp4 (ENSPNYG00000017123)	chtf8 (ENSPNYG00000017105)	has3 (ENSPNYG00000017020)	TANGO6 (ENSPNYG00000016980)	ENSPNYG00000016956
Haplochromini_B	ANCESTRAL SPECIES	20	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c	ENSGT00940000164795	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00730000111190	ENSGT00940000170707.b	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734.a
Eastern happy	MODERN SPECIES	19	CHST1 (ENSACLG00000015312)	ENSACLG00000015360	ENSACLG00000015426	ENSACLG00000015477	ripor1 (ENSACLG00000015504)	ctcf (ENSACLG00000015731)	carmil2 (ENSACLG00000015775)	ric8a (ENSACLG00000015894)	ppp6r3 (ENSACLG00000015972)	tmem170a (ENSACLG00000016088)	ENSACLG00000016109	ENSACLG00000016116	ENSACLG00000016130	ENSACLG00000016146	lrp5 (ENSACLG00000016173)	CCND1 (ENSACLG00000016341) #22	PRR5L (ENSACLG00000016367)	commd9 (ENSACLG00000016394)	zgc:114188 (ENSACLG00000016484)	cart3 (ENSACLG00000016566)	zgc:193812 (ENSACLG00000016583)	ENSACLG00000016602	ANPEP (ENSACLG00000016717)	anpepb.1 (ENSACLG00000017196)	zc3h18 (ENSACLG00000017260)	ENSACLG00000017316	utp4 (ENSACLG00000017341)	chtf8 (ENSACLG00000017377)	has3 (ENSACLG00000017465)	TANGO6 (ENSACLG00000017485)	ENSACLG00000017569
Zebra mbuna	MODERN SPECIES	1110	ENSMZEG00005022720	CHST1 (ENSMZEG00005022721)	ENSMZEG00005022725	ENSMZEG00005022727	ENSMZEG00005022731	ripor1 (ENSMZEG00005022734)	ctcf (ENSMZEG00005022737)	carmil2 (ENSMZEG00005022744)	ric8a (ENSMZEG00005022749)	ppp6r3 (ENSMZEG00005022754)	tmem170a (ENSMZEG00005022757)	ENSMZEG00005022760	ENSMZEG00005022761	ENSMZEG00005022762	lrp5 (ENSMZEG00005022764)	CCND1 (ENSMZEG00005022773) #22	commd9 (ENSMZEG00005022782)	zgc:114188 (ENSMZEG00005022785)	cart3 (ENSMZEG00005022793)	zgc:193812 (ENSMZEG00005022794)	aass (ENSMZEG00005022798)	ENSMZEG00005022812	dnaaf4 (ENSMZEG00005022822)	ENSMZEG00005022829	ckap5 (ENSMZEG00005022836)	cstpp1 (ENSMZEG00005022844)	ENSMZEG00005022847	cry2 (ENSMZEG00005022850)	ENSMZEG00005022852	TANGO6 (ENSMZEG00005022854)	has3 (ENSMZEG00005022858)
Lyretail cichlid	MODERN SPECIES	293	bcar1 (ENSNBRG00000011533)	ENSNBRG00000011507	CHST1 (ENSNBRG00000011484)	ENSNBRG00000011464	ENSNBRG00000011435	ENSNBRG00000011424	ripor1 (ENSNBRG00000011411)	ctcf (ENSNBRG00000011394)	carmil2 (ENSNBRG00000011303)	ric8a (ENSNBRG00000011102)	ppp6r3 (ENSNBRG00000010904)	tmem170a (ENSNBRG00000010868)	ENSNBRG00000010863	ENSNBRG00000010858	lrp5 (ENSNBRG00000010783)	CCND1 (ENSNBRG00000010664) #22	PRR5L (ENSNBRG00000010633)	commd9 (ENSNBRG00000010620)	zgc:114188 (ENSNBRG00000010579)	cart3 (ENSNBRG00000010561)	zgc:193812 (ENSNBRG00000010542)	ENSNBRG00000010500	ANPEP (ENSNBRG00000010175)	anpepb.1 (ENSNBRG00000009985)	zc3h18 (ENSNBRG00000009931)	ENSNBRG00000009917	utp4 (ENSNBRG00000009785)	chtf8 (ENSNBRG00000009772)	has3 (ENSNBRG00000009763)	TANGO6 (ENSNBRG00000009725)	ENSNBRG00000009701
Nile tilapia	MODERN SPECIES	19	bcar1 (ENSONIG00000004066)	ENSONIG00000004069	ENSONIG00000030672	CHST1 (ENSONIG00000039191)	ENSONIG00000004074	ENSONIG00000031548	ripor1 (ENSONIG00000004084)	ctcf (ENSONIG00000004097)	carmil2 (ENSONIG00000030089)	ric8a (ENSONIG00000004103)	ppp6r3 (ENSONIG00000004106)	tmem170a (ENSONIG00000039755)	ENSONIG00000039463	ENSONIG00000028547	lrp5 (ENSONIG00000004121)	CCND1 (ENSONIG00000004126) #22	PRR5L (ENSONIG00000004131)	commd9 (ENSONIG00000004136)	cart3 (ENSONIG00000035649)	zgc:193812 (ENSONIG00000004140)	ENSONIG00000004141	zgc:114188 (ENSONIG00000004138)	ANPEP (ENSONIG00000004148)	anpepb.1 (ENSONIG00000004164)	zc3h18 (ENSONIG00000004183)	ENSONIG00000004190	utp4 (ENSONIG00000004191)	chtf8 (ENSONIG00000041378)	has3 (ENSONIG00000004198)	TANGO6 (ENSONIG00000004199)	ENSONIG00000031153
Midas cichlid	MODERN SPECIES	1256	bcar1 (ENSACIG00000018562)	cfdp1 (ENSACIG00000018553)	CHST1 (ENSACIG00000018539)	ENSACIG00000017830	ENSACIG00000017766	ripor1 (ENSACIG00000017608)	ctcf (ENSACIG00000017577)	carmil2 (ENSACIG00000017518)	ENSACIG00000017507	ric8a (ENSACIG00000017482)	ppp6r3 (ENSACIG00000017446)	si:ch73-130a3.4 (ENSACIG00000017428)	tmem170a (ENSACIG00000017419)	ENSACIG00000017412	lrp5 (ENSACIG00000017339)	CCND1 (ENSACIG00000017197) #22	PRR5L (ENSACIG00000017175)	commd9 (ENSACIG00000017148)	zgc:114188 (ENSACIG00000017108)	cart3 (ENSACIG00000017102)	ENSACIG00000017086	ENSACIG00000017061	ENSACIG00000017020
Pomacentridae	ANCESTRAL SPECIES	195																ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b.p	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000165046.a	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b.n	ENSGT00950000182983.B.b
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	2283																CCND1 (ENSSPAG00000005339) #22
Bicolor damselfish	MODERN SPECIES	2427																CCND1 (ENSSPAG00000005010) #22	ENSSPAG00000004998	bcar1 (ENSSPAG00000004952)
Percomorphaceae_C	ANCESTRAL SPECIES	5				ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000165046.a	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b
Eupercaria	ANCESTRAL SPECIES	33														ENSGT00940000170837	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000153377.B	ENSGT01100000263627	ENSGT00940000159189	ENSGT00390000009899.a.d	ENSGT00390000014700.b.a.a	ENSGT00940000155112.A.c	ENSGT00940000156672.o.a	ENSGT00940000153717.b.g	ENSGT00390000005430	ENSGT00940000155391.a.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000157182.g.a #28
Eupecaria_A	ANCESTRAL SPECIES	7														ENSGT00940000170837	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000153377.B	ENSGT01100000263627	ENSGT00940000159189	ENSGT00390000009899.a.d	ENSGT00390000014700.b.a.a	ENSGT00940000155112.A.c	ENSGT00940000156672.o.a	ENSGT00940000153717.b.g	ENSGT00390000005430	ENSGT00940000155391.a.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000157182.g.a #28
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00940000161262.b	ENSGT00390000013899.b	ENSGT00940000157182.g.a #28	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000165046.a	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Eupecaria_C	ANCESTRAL SPECIES	29															ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000153377.B	ENSGT01100000263627	ENSGT00940000159189	ENSGT00390000009899.a.d	ENSGT00390000014700.b.a.a	ENSGT00940000155112.A.c	ENSGT00940000156672.o.a	ENSGT00940000153717.b.g	ENSGT00390000005430	ENSGT00940000155391.a.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000157182.g.a #28
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	36													ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00940000159189	ENSGT00390000009899.a.d	ENSGT00390000014700.b.a.a	ENSGT00940000155112.A.c	ENSGT00940000156672.o.a	ENSGT00940000153717.b.g	ENSGT00390000005430	ENSGT00940000155391.a.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000157182.g.a #28	ENSGT00390000013899.b	ENSGT00940000161262.b
European seabass	MODERN SPECIES	19	ENSDLAG00005005139	ENSDLAG00005005243 #28	ENSDLAG00005026515	ENSDLAG00005008609	ENSDLAG00005011483	ENSDLAG00005034975	ripor1 (ENSDLAG00005009217)	ENSDLAG00005009429	carmil2 (ENSDLAG00005009458)	ENSDLAG00005027262	ppp6r3 (ENSDLAG00005009527)	ENSDLAG00005027123	ENSDLAG00005021727	ENSDLAG00005005586	ENSDLAG00005002566	ENSDLAG00005011302 #22	ENSDLAG00005029008	ENSDLAG00005027769	ENSDLAG00005011271	ENSDLAG00005010235	gal (ENSDLAG00005010216)	ENSDLAG00005010209	ENSDLAG00005010167	ENSDLAG00005029047	ENSDLAG00005032436	NTRK3 (ENSDLAG00005010055)	ENSDLAG00005031610	ENSDLAG00005032281	ENSDLAG00005032231	ENSDLAG00005010014	ENSDLAG00005010009
Large yellow croaker	MODERN SPECIES	481	spcs3 (ENSLCRG00005016034)	ENSLCRG00005016033	galnt7 (ENSLCRG00005015543)	ENSLCRG00005015537	ENSLCRG00005015535	ENSLCRG00005015528	mtmr7b (ENSLCRG00005015520)	pmm2 (ENSLCRG00005015513)	hmgb2a (ENSLCRG00005015511)	hpgd (ENSLCRG00005015507)	wdr17 (ENSLCRG00005014632)	GLRA3 (ENSLCRG00005014621)	ENSLCRG00005014619	GPM6A (ENSLCRG00005014617)	ndufs8a (ENSLCRG00005014612)	CCND1 (ENSLCRG00005014609) #22	NTRK3 (ENSLCRG00005014607)	ENSLCRG00005014605	ENSLCRG00005014604	ENSLCRG00005014603	ZMAT4 (ENSLCRG00005014600)	ENSLCRG00005014599	tcima (ENSLCRG00005014598)	ENSLCRG00005014596	adam28 (ENSLCRG00005013761)	ppp3cca (ENSLCRG00005013477)	vps37ba (ENSLCRG00005013470)	abcb9 (ENSLCRG00005013468)	zgc:113436 (ENSLCRG00005013464)	ogfod2 (ENSLCRG00005013463)	SLC4A5 (ENSLCRG00005012186)
Gilthead seabream	MODERN SPECIES	22	kiaa0513 (ENSSAUG00010022194)	ces3 (ENSSAUG00010022197)	zfpm1 (ENSSAUG00010022200)	ENSSAUG00010022201	trhr2 (ENSSAUG00010022202)	ENSSAUG00010022204	ENSSAUG00010022206	zc3h18 (ENSSAUG00010022208)	utp4 (ENSSAUG00010022210)	ENSSAUG00010022211	chtf8 (ENSSAUG00010022212)	TANGO6 (ENSSAUG00010022213)	ENSSAUG00010022215	ENSSAUG00010022217	lrp5 (ENSSAUG00010022247)	CCND1 (ENSSAUG00010023869) #22	zgc:158868 (ENSSAUG00010023872)	bcar1 (ENSSAUG00010023876)	ENSSAUG00010023878	gal (ENSSAUG00010001192)	ENSSAUG00010001199	pard6a (ENSSAUG00010001203)
Perciformes	ANCESTRAL SPECIES	28	ENSGT00390000013269	ENSGT00950000182939.a.b.b	ENSGT00940000157182.g.a #28	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Cottioidei	ANCESTRAL SPECIES	32	ENSGT00390000015057	ENSGT00960000187029	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248783	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Lumpfish	MODERN SPECIES	21	znf276 (ENSCLMG00005002953)	vps9d1 (ENSCLMG00005003002)	ENSCLMG00005003110	ENSCLMG00005003113	pdf (ENSCLMG00005003116)	tat (ENSCLMG00005003124)	zgc:56622 (ENSCLMG00005003127)	klhl36 (ENSCLMG00005003133)	cotl1 (ENSCLMG00005003137)	meak7 (ENSCLMG00005003140)	plcg2 (ENSCLMG00005003172)	tmem170a (ENSCLMG00005003492)	ENSCLMG00005003494	ENSCLMG00005003495	lrp5 (ENSCLMG00005003603)	CCND1 (ENSCLMG00005012750) #22	zgc:158868 (ENSCLMG00005012753)	bcar1 (ENSCLMG00005012755)	cfdp1 (ENSCLMG00005012757)	gal (ENSCLMG00005012758)	ENSCLMG00005012760	pard6a (ENSCLMG00005012761)	NTRK3 (ENSCLMG00005012762)	ENSCLMG00005012775	ENSCLMG00005012779	ENSCLMG00005012781	ENSCLMG00005012782	ska1 (ENSCLMG00005012783)
Perciformes_a	ANCESTRAL SPECIES	30	ENSGT00390000013269	ENSGT00950000182939.a.b.b	ENSGT00940000157182.g.a #28	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Channel bull blenny	MODERN SPECIES	20	si:dkey-12e7.1 (ENSCGOG00000009918)	chka (ENSCGOG00000009935)	ANO1 (ENSCGOG00000010581) #28	ENSCGOG00000012139	ENSCGOG00000012142	ENSCGOG00000012167	ripor1 (ENSCGOG00000012180)	carmil2 (ENSCGOG00000012360)	ENSCGOG00000012365	slc12a3 (ENSCGOG00000012366)	ric8a (ENSCGOG00000012373)	ENSCGOG00000012429	ppp6r3 (ENSCGOG00000012430)	ENSCGOG00000012433	lrp5 (ENSCGOG00000012460)	CCND1 (ENSCGOG00000013654) #22	zgc:158868 (ENSCGOG00000013655)	bcar1 (ENSCGOG00000013656)	cfdp1 (ENSCGOG00000013658)	gal (ENSCGOG00000013660)	pard6a (ENSCGOG00000013672)	NTRK3 (ENSCGOG00000013680)	ENSCGOG00000013720	ska1 (ENSCGOG00000013722)	ENSCGOG00000013725	ENSCGOG00000013728	ENSCGOG00000013733	ENSCGOG00000013739	KLHL25 (ENSCGOG00000013747)	mical2b (ENSCGOG00000013829)	parvaa (ENSCGOG00000014093)
Pike perch	MODERN SPECIES	67	ENSSLUG00000017931	ENSSLUG00000017753	ENSSLUG00000017744	POGK (ENSSLUG00000017738)	ripor1 (ENSSLUG00000017484)	ctcf (ENSSLUG00000017393)	ENSSLUG00000017377	carmil2 (ENSSLUG00000017354)	zgc:113625 (ENSSLUG00000017346)	ric8a (ENSSLUG00000017255)	ppp6r3 (ENSSLUG00000016881)	tmem170a (ENSSLUG00000016823)	ENSSLUG00000016818	ENSSLUG00000016815	lrp5 (ENSSLUG00000013018)	CCND1 (ENSSLUG00000012894) #22	zgc:158868 (ENSSLUG00000012885)	bcar1 (ENSSLUG00000012881)	cfdp1 (ENSSLUG00000012876)	gal (ENSSLUG00000012861)	ENSSLUG00000012851	ENSSLUG00000012845	ENSSLUG00000012841	ENSSLUG00000012835	ENSSLUG00000012827	ENSSLUG00000012819	ENSSLUG00000012788	ENSSLUG00000012767	ENSSLUG00000012758	ENSSLUG00000012749	ENSSLUG00000012746
Ballan wrasse	MODERN SPECIES	1782																ENSLBEG00000021817 #22	zgc:158868 (ENSLBEG00000021836)
Percomorphaceae_D	ANCESTRAL SPECIES	5				ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a
Anabantaria	ANCESTRAL SPECIES	5					ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000153377.B	ENSGT01100000263627	ENSGT00940000159189	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b
Zig-zag eel	MODERN SPECIES	20	ENSMAMG00000011543	ENSMAMG00000011489	ENSMAMG00000011461	ENSMAMG00000011442	ENSMAMG00000011435	ENSMAMG00000011432	ripor1 (ENSMAMG00000011408)	ENSMAMG00000011357	carmil2 (ENSMAMG00000011349)	ENSMAMG00000011327	ENSMAMG00000011235	ENSMAMG00000024413	ENSMAMG00000011203	ENSMAMG00000011195	lrp5 (ENSMAMG00000011108)	ENSMAMG00000011083 #22	ENSMAMG00000011067	ENSMAMG00000011047	ENSMAMG00000011032	ENSMAMG00000025706	ENSMAMG00000010975	ENSMAMG00000010952	ENSMAMG00000010933	ADM2 (ENSMAMG00000010921)	miox (ENSMAMG00000010886)	lmf2a (ENSMAMG00000010878)	c2cd5 (ENSMAMG00000010750)	ENSMAMG00000010703	fkbp4 (ENSMAMG00000010684)	ddx11 (ENSMAMG00000010598)	wash1 (ENSMAMG00000010562)
Anabantoidei	ANCESTRAL SPECIES	5											ENSGT00940000170837	ENSGT01100000263627	ENSGT00940000159189	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b
Climbing perch	MODERN SPECIES	19			ENSATEG00000027403	ENSATEG00000003391	ENSATEG00000007671	ENSATEG00000003425	ENSATEG00000003489	ENSATEG00000003530	carmil2 (ENSATEG00000003884)	ENSATEG00000003920	ripor1 (ENSATEG00000003983)	tmem170a (ENSATEG00000004279)	ENSATEG00000004298	ENSATEG00000028027	lrp5 (ENSATEG00000004330)	ENSATEG00000004455 #22	ENSATEG00000004461	ENSATEG00000004489	ENSATEG00000004519	ENSATEG00000004528	ENSATEG00000025433	ENSATEG00000028198	ENSATEG00000027608	ENSATEG00000004568	ENSATEG00000004639	ENSATEG00000004732	ENSATEG00000026940	ENSATEG00000004743	ENSATEG00000004791	ENSATEG00000004830	ENSATEG00000004941
Carangaria	ANCESTRAL SPECIES	36				ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000165046.a	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Carangaria_A	ANCESTRAL SPECIES	87				ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000165046.a	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	7	ENSLCAG00010000773	WFIKKN2 (ENSLCAG00010000612)	ENSLCAG00010000605	ENSLCAG00010000594	ENSLCAG00010000501	ENSLCAG00010000464	ripor1 (ENSLCAG00010000438)	ENSLCAG00010000421	carmil2 (ENSLCAG00010000393)	ric8a (ENSLCAG00010000369)	ppp6r3 (ENSLCAG00010000235)	tmem170a (ENSLCAG00010000143)	ENSLCAG00010025811	ENSLCAG00010025808	lrp5 (ENSLCAG00010025409)	CCND1 (ENSLCAG00010025075) #22	ENSLCAG00010025070	bcar1 (ENSLCAG00010025054)	cfdp1 (ENSLCAG00010025045)	gal (ENSLCAG00010025039)	zgc:110339 (ENSLCAG00010025033)	pard6a (ENSLCAG00010025026)	ENSLCAG00010025023	NTRK3 (ENSLCAG00010024984)	ENSLCAG00010024966	ENSLCAG00010024956	ska1 (ENSLCAG00010024953)	ENSLCAG00010024950	ENSLCAG00010024940	KLHL25 (ENSLCAG00010024928)
Barramundi perch	MODERN SPECIES	1602																CCND1 (ENSLCAG00010023129) #22	ENSLCAG00010023128
Seriola	ANCESTRAL SPECIES	121	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT00940000168817.u	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000168375	ENSGT00940000174862	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	3283	ENSSLDG00000001894	ENSSLDG00000001910	ENSSLDG00000001945	ripor1 (ENSSLDG00000001962)	ENSSLDG00000002045	ENSSLDG00000002062	carmil2 (ENSSLDG00000002091)	ric8a (ENSSLDG00000002223)	ppp6r3 (ENSSLDG00000002277)	tmem170a (ENSSLDG00000002446)	ENSSLDG00000002468	ENSSLDG00000002475	ENSSLDG00000002485	lrp5 (ENSSLDG00000002497)	ENSSLDG00000002623	CCND1 (ENSSLDG00000002651) #22	zgc:158868 (ENSSLDG00000002661)	ENSSLDG00000002674	bcar1 (ENSSLDG00000002694)	ENSSLDG00000002737	ENSSLDG00000002774	pard6a (ENSSLDG00000002806)	NTRK3 (ENSSLDG00000002828)	ENSSLDG00000002920	septin15 (ENSSLDG00000002936)	ENSSLDG00000003009	ENSSLDG00000003039	ENSSLDG00000003074	exoc3l1 (ENSSLDG00000003124)	prmt7 (ENSSLDG00000003251)	ciapin1 (ENSSLDG00000003358)
Yellowtail amberjack	MODERN SPECIES	1476																ENSSLDG00000000668 #22
Greater amberjack	MODERN SPECIES	144	ENSSDUG00000019901	ENSSDUG00000019911	ENSSDUG00000019922	ENSSDUG00000019945	ripor1 (ENSSDUG00000019954)	ENSSDUG00000020012	ctcf (ENSSDUG00000020026)	carmil2 (ENSSDUG00000020088)	ric8a (ENSSDUG00000020163)	ppp6r3 (ENSSDUG00000020348)	tmem170a (ENSSDUG00000020432)	ENSSDUG00000020450	ENSSDUG00000020533	ENSSDUG00000020537	lrp5 (ENSSDUG00000020552)	CCND1 (ENSSDUG00000020651) #22	zgc:158868 (ENSSDUG00000020658)	bcar1 (ENSSDUG00000020666)	cfdp1 (ENSSDUG00000020700)	gal (ENSSDUG00000020710)	ENSSDUG00000020719	ENSSDUG00000020746	pard6a (ENSSDUG00000020755)	ENSSDUG00000020763	NTRK3 (ENSSDUG00000020777)
Pleuronectoidei	ANCESTRAL SPECIES	91					ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a #22	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b
Turbot	MODERN SPECIES	1	ENSSMAG00000031849	ENSSMAG00000004289	ENSSMAG00000004277	ENSSMAG00000004259	ENSSMAG00000004243	ENSSMAG00000004223	ripor1 (ENSSMAG00000004172)	ENSSMAG00000004154	carmil2 (ENSSMAG00000004112)	ENSSMAG00000004083	ENSSMAG00000003943	ENSSMAG00000034988	ENSSMAG00000003916	ENSSMAG00000034370	ENSSMAG00000003833	ENSSMAG00000003806 #22	ENSSMAG00000003794	ENSSMAG00000003746	ENSSMAG00000003724	ENSSMAG00000035143	ENSSMAG00000003708	ENSSMAG00000003695	ENSSMAG00000022941	ENSSMAG00000003646	ENSSMAG00000003658	ENSSMAG00000003606	urahb (ENSSMAG00000026967)	ENSSMAG00000003532	GLG1 (ENSSMAG00000003223)	ENSSMAG00000003188	MLKL (ENSSMAG00000003174)
Tongue sole	MODERN SPECIES	16	wasla (ENSCSEG00000001529)	hyal6 (ENSCSEG00000001525)	HYAL4 (ENSCSEG00000001523)	ENSCSEG00000001520	SPAM1 (ENSCSEG00000001515)	GPR37 (ENSCSEG00000001505)	ENSCSEG00000001498	grm8b (ENSCSEG00000001491)	KLHL25 (ENSCSEG00000001476)	ENSCSEG00000001456	ENSCSEG00000001449	ENSCSEG00000001448	ska1 (ENSCSEG00000001402)	ENSCSEG00000001387	NTRK3 (ENSCSEG00000001381)	CCND1 (ENSCSEG00000001379) #22	zgc:158868 (ENSCSEG00000001377)	bcar1 (ENSCSEG00000001369)	cfdp1 (ENSCSEG00000001361)	gal (ENSCSEG00000001348)	pard6a (ENSCSEG00000001342)	ENSCSEG00000001338	wee1 (ENSCSEG00000001192)	znf143b (ENSCSEG00000001176)	ENSCSEG00000001167	akip1 (ENSCSEG00000001162)	RPL27A (ENSCSEG00000001155)	ENSCSEG00000001150	ENSCSEG00000001146	LMO1 (ENSCSEG00000001141)	ENSCSEG00000001138
Pinecone sodierfish	MODERN SPECIES	20	ENSMMDG00005000146	ska1 (ENSMMDG00005000177)	ENSMMDG00005000201	ENSMMDG00005000224	NTRK3 (ENSMMDG00005000233)	pard6a (ENSMMDG00005000249)	ENSMMDG00005000272	zgc:110339 (ENSMMDG00005000282)	gal (ENSMMDG00005000292)	ppp6r3 (ENSMMDG00005000395)	lrp5 (ENSMMDG00005000517)	ENSMMDG00005000525	ENSMMDG00005000528	ric8a (ENSMMDG00005000536)	ENSMMDG00005000546	CCND1 (ENSMMDG00005000547) #22	necab2 (ENSMMDG00005000575)	SLC38A8 (ENSMMDG00005000587)	mbtps1 (ENSMMDG00005000710)	pskh1 (ENSMMDG00005002062)	NRN1L (ENSMMDG00005002068)	edc4 (ENSMMDG00005002120)	nutf2 (ENSMMDG00005003497)	ENSMMDG00005003500	ranbp10 (ENSMMDG00005003529)	RPL27A (ENSMMDG00005005745)	ENSMMDG00005005757	ENSMMDG00005005764	LMO1 (ENSMMDG00005005773)	RIC3 (ENSMMDG00005005784)	psma1 (ENSMMDG00005005815)
Cod	MODERN SPECIES	22	ENSGMOG00000027385	ENSGMOG00000013758	ENSGMOG00000034754	GPR22 (ENSGMOG00000028934)	ENSGMOG00000013782	PRKAR2B (ENSGMOG00000013805)	ENSGMOG00000013836	ENSGMOG00000013875	ENSGMOG00000016578	ENSGMOG00000013910	ENSGMOG00000031789	ENSGMOG00000018291	ENSGMOG00000018310	ENSGMOG00000017065	ENSGMOG00000028914	ENSGMOG00000016975 #22	ENSGMOG00000030141	ENSGMOG00000037089	cep41 (ENSGMOG00000010629)	poc1b (ENSGMOG00000010639)	dusp6 (ENSGMOG00000001929)	ENSGMOG00000001936	kitlga (ENSGMOG00000031530)	TMTC3 (ENSGMOG00000010287)	cep290 (ENSGMOG00000010306)	zgc:103499 (ENSGMOG00000010362)	ENSGMOG00000034164	ENSGMOG00000010375	ENSGMOG00000010397	ENSGMOG00000001366	ENSGMOG00000012793
Otomorpha	ANCESTRAL SPECIES	86	ENSGT00940000154146.b.b.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00970000193421.C.b.i.a	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009899.a.d	ENSGT00940000167440	ENSGT00390000009663	ENSGT00940000165046.a	ENSGT00940000161379	ENSGT00990000204217	ENSGT00390000001802.ib	ENSGT00390000014700.b.a.a	ENSGT00940000157816.a.a #22	ENSGT00940000158825.d #25	ENSGT00940000157182.g.a #28	ENSGT00390000000972	ENSGT00940000157033.h	ENSGT00940000156088.c.b	ENSGT00390000001116	ENSGT00940000158841	ENSGT00390000007852	ENSGT00950000182808.b.b	ENSGT00950000182832.D.a	ENSGT00940000158102	ENSGT00940000157319	ENSGT00950000182863.A.a.a	ENSGT00390000003058.b.a.b	ENSGT00940000162986
Otophysi	ANCESTRAL SPECIES	232										ENSGT00950000182939.b.b	ENSGT00390000001511	ENSGT00940000156267.ob.b.b	ENSGT00550000074855	ENSGT00440000034107.a.f	ENSGT00390000005534.d	ENSGT00940000157816.a.a #22	ENSGT00940000158825.d #25	ENSGT00940000157182.g.a #28	ENSGT00940000156088.c.b	ENSGT00390000001116	ENSGT00940000158841	ENSGT00390000007852	ENSGT00950000182808.b.b	ENSGT00950000182832.D.a	ENSGT00940000158102	ENSGT00940000157319	ENSGT00950000182863.A.a.a	ENSGT00390000003058.b.a.b	ENSGT00940000162986	ENSGT00390000015366	ENSGT00940000155010.b
Characiphysae	ANCESTRAL SPECIES	44	ENSGT00950000182940.b.a.a.g.a	ENSGT00530000063712.a.a.o.b.b	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00970000193421.C.b.i.b	ENSGT00940000153377.B	ENSGT00940000156574.C.x.b	ENSGT00390000009899.a.d	ENSGT00940000167440	ENSGT00390000009663	ENSGT00940000165046.a	ENSGT00940000161379	ENSGT00990000204217	ENSGT00390000001802.ib	ENSGT00390000014700.b.a.a	ENSGT00940000157816.a.a #22	ENSGT00940000158825.d #25	ENSGT00940000157182.g.a.b #28
Characiphysae_b	ANCESTRAL SPECIES	174	ENSGT00530000063712.a.a.o.b.b	ENSGT00940000154876.a.b.b	ENSGT00940000154876.a.b.a	ENSGT00970000193421.C.b.i.a	ENSGT00970000193421.C.b.i.b	ENSGT00940000153377.B	ENSGT00940000156574.C.x.b	ENSGT00390000009899.a.d	ENSGT00940000167440	ENSGT00390000009663	ENSGT00940000165046.a	ENSGT00940000161379	ENSGT00990000204217	ENSGT00390000001802.ib	ENSGT00390000014700.b.a.a	ENSGT00940000157816.a.a #22	ENSGT00940000158825.d #25	ENSGT00940000157182.g.a.b #28
Electric eel	MODERN SPECIES	642															ric8a (ENSEEEG00000020388)	CCND1 (ENSEEEG00000020419) #22	FGF4 (ENSEEEG00000020443) #25	ANO1 (ENSEEEG00000020449) #28	ENSEEEG00000020451 #28	PTPRB (ENSEEEG00000020457)	ENSEEEG00000020468	ENSEEEG00000020472	ENSEEEG00000020473	ENSEEEG00000020474	ENSEEEG00000020475
Clupeiformes	ANCESTRAL SPECIES	712																ENSGT00940000157816.a.a #22	ENSGT00940000158825.d #25	ENSGT00940000157182.g.a #28
Atlantic herring	MODERN SPECIES	19	ENSCHAG00000025675	INSC (ENSCHAG00000025694)	calca (ENSCHAG00000025747)	psma1 (ENSCHAG00000025756)	ENSCHAG00000025770	ENSCHAG00000025775	ENSCHAG00000025777	lrp5 (ENSCHAG00000025848)	ppp6r3 (ENSCHAG00000026549)	gal (ENSCHAG00000000109)	zgc:110339 (ENSCHAG00000000118)	cox8b (ENSCHAG00000000131)	psmd13 (ENSCHAG00000000194)	ric8a (ENSCHAG00000000993)	TPCN2 (ENSCHAG00000001836) #20	CCND1 (ENSCHAG00000002200) #22	FGF4 (ENSCHAG00000002235) #25	fgf3 (ENSCHAG00000002250) #26	ANO1 (ENSCHAG00000002318) #28	shank2b (ENSCHAG00000004324) #31	endouc (ENSCHAG00000006479)	POLR3B (ENSCHAG00000006626)	rfx4 (ENSCHAG00000007091)	ric8b (ENSCHAG00000007520)	ENSCHAG00000007638	tmem263 (ENSCHAG00000007649)	si:ch73-62b13.1 (ENSCHAG00000007667)	mterf2 (ENSCHAG00000007688)	ENSCHAG00000007731	smpd3 (ENSCHAG00000007772)	ENSCHAG00000007790
Denticle herring	MODERN SPECIES	17	ric8a (ENSDCDG00000030608)	psmd13 (ENSDCDG00000030543)	ENSDCDG00000030535	zgc:110339 (ENSDCDG00000030533)	gal (ENSDCDG00000030531)	ppp6r3 (ENSDCDG00000030501)	lrp5 (ENSDCDG00000028022)	ENSDCDG00000027937	adat1 (ENSDCDG00000027933)	GABARAPL2 (ENSDCDG00000027931)	tmem231 (ENSDCDG00000027929)	chst6 (ENSDCDG00000027927)	spire2 (ENSDCDG00000027926)	SNTB2 (ENSDCDG00000027925)	TPCN2 (ENSDCDG00000027921) #20	CCND1 (ENSDCDG00000027917) #22	ENSDCDG00000027916	FGF4 (ENSDCDG00000027912) #25	ANO1 (ENSDCDG00000025413) #28	shank2b (ENSDCDG00000024811) #31	ENSDCDG00000024526	ENSDCDG00000024446	zgc:101566 (ENSDCDG00000024435)	ENSDCDG00000024418	ENSDCDG00000024406	cry2 (ENSDCDG00000022971)	mapk8ip1a (ENSDCDG00000022928)	cstpp1 (ENSDCDG00000022924)	ckap5 (ENSDCDG00000016629)	ENSDCDG00000016397	ENSDCDG00000016392
Spotted gar	MODERN SPECIES	666	ENSLOCG00000004698	ENSLOCG00000004766	zdhhc13 (ENSLOCG00000004798)	csrp3 (ENSLOCG00000004817)	e2f8 (ENSLOCG00000004831)	NAV2 (ENSLOCG00000004849)	dbx1a (ENSLOCG00000004886)	htatip2 (ENSLOCG00000004900)	prmt3 (ENSLOCG00000004922)	slc6a5 (ENSLOCG00000004950)	NELL1 (ENSLOCG00000004971)	large2 (ENSLOCG00000004996)	dhcr7 (ENSLOCG00000005014) #33	nadsyn1 (ENSLOCG00000005029) #34	tpcn2 (ENSLOCG00000005051) #20	CCND1 (ENSLOCG00000005067) #22	lto1 (ENSLOCG00000005078)	fgf19 (ENSLOCG00000005100) #24	fgf4 (ENSLOCG00000005119) #25	fgf3 (ENSLOCG00000005127) #26	zgc:153993 (ENSLOCG00000005142)	ano1a (ENSLOCG00000005155) #28	FADD (ENSLOCG00000005182)	ppfia1 (ENSLOCG00000005197) #29	CTTN (ENSLOCG00000005239) #30	shank2b (ENSLOCG00000005253) #31	acte1 (ENSLOCG00000005275)	ENSLOCG00000005294	ENSLOCG00000005304	zgc:101566 (ENSLOCG00000005326)	chst1 (ENSLOCG00000017322)
Reedfish	MODERN SPECIES	10	ASCL3 (ENSECRG00000013014)	dennd2b (ENSECRG00000013034)	RPL27A (ENSECRG00000013081)	TRIM66 (ENSECRG00000013112)	rerglb (ENSECRG00000013141)	stk33 (ENSECRG00000013161)	ENSECRG00000013187	lmo1 (ENSECRG00000013220)	RIC3 (ENSECRG00000013264)	TUB (ENSECRG00000013304)	ENSECRG00000013356	ENSECRG00000013374	dhcr7 (ENSECRG00000013424) #33	nadsyn1 (ENSECRG00000013464) #34	tpcn2 (ENSECRG00000013517) #20	CCND1 (ENSECRG00000013563) #22	lto1 (ENSECRG00000013576)	fgf19 (ENSECRG00000013594) #24	fgf4 (ENSECRG00000013614) #25	fgf3 (ENSECRG00000013631) #26	ano1a (ENSECRG00000013688) #28	FADD (ENSECRG00000013771)	PPFIA1 (ENSECRG00000013899) #29	CTTN (ENSECRG00000014308) #30	shank2b (ENSECRG00000014415) #31	ENSECRG00000014528 #31	ENSECRG00000014561 #31	ENSECRG00000014642	ENSECRG00000000421	ENSECRG00000000434	chst1 (ENSECRG00000000443)
Actinopterygii	ANCESTRAL SPECIES	12	ENSGT00940000159848	ENSGT00940000156152.e.a	ENSGT00390000007640.b	ENSGT00940000160394.a	ENSGT00390000016223	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a	ENSGT00940000155568	ENSGT00940000165402	ENSGT00390000017790	ENSGT00940000158758	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b	ENSGT00390000013899.b	ENSGT00940000161262.a
Neopterygii	ANCESTRAL SPECIES	4	ENSGT00940000159848	ENSGT00940000156152.e.a	ENSGT00390000007640.b	ENSGT00940000160394.a	ENSGT00390000016223	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a	ENSGT00940000155568	ENSGT00940000165402	ENSGT00390000017790	ENSGT00940000158758	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182 #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000157530.b.a	ENSGT01090000260003.a.a	ENSGT00940000157530.b.b	ENSGT00390000013899.b
Osteoglossocephalai	ANCESTRAL SPECIES	81									ENSGT00940000155568	ENSGT00940000165402	ENSGT00390000017790	ENSGT00940000158758	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825 #25	ENSGT00940000161128 #26	ENSGT00940000157182.g.a #28	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000165480	ENSGT00940000157530.b.b
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	68	ENSGT00940000155357.b	ENSGT00940000154641.C.b.e.b	ENSGT00910000144204.b.d	ENSGT00940000161080.b	ENSGT00940000157577.c.a.e	ENSGT00940000159637.c.a	ENSGT00940000156969.vc.b	ENSGT00390000008152.B.b.f	ENSGT00940000159545	ENSGT00940000160201	ENSGT00390000017790	ENSGT00940000158758	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763.b #20	ENSGT00940000157816.a.b.a #22	ENSGT00940000166897	ENSGT00940000160601.i #24	ENSGT00940000158825.b #25	ENSGT00940000161128.c.b #26	ENSGT00940000161128.d #26	ENSGT00940000157182.g.a #28	ENSGT01050000244900.a.a.b #29	ENSGT00940000158565 #30	ENSGT00940000153561.b.a.a.b #31	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000165480	ENSGT00940000157530.b.b	ENSGT00390000013899.b	ENSGT00940000161262.a
Asian bonytongue	MODERN SPECIES	2	IGDCC4 (ENSSFOG00015029172)	IGDCC3 (ENSSFOG00015006357)	cilp (ENSSFOG00015006347)	slc5a12 (ENSSFOG00015006291)	ENSSFOG00015006270	agbl2 (ENSSFOG00015006250)	ENSSFOG00015006192	pex16 (ENSSFOG00015006166)	large2 (ENSSFOG00015006104)	large2 (ENSSFOG00015006066)	ENSSFOG00015006056	dhcr7 (ENSSFOG00015006035) #33	nadsyn1 (ENSSFOG00015005980) #34	tpcn2 (ENSSFOG00015005933) #20	ENSSFOG00015030802	ccnd1 (ENSSFOG00015005911) #22	lto1 (ENSSFOG00015027132)	fgf19 (ENSSFOG00015005865) #24	ENSSFOG00015026779	fgf4 (ENSSFOG00015011876) #25	FGF3 (ENSSFOG00015005700) #26	ANO1 (ENSSFOG00015005616) #28	FADD (ENSSFOG00015032079)	ppfia1 (ENSSFOG00015005328) #29	CTTN (ENSSFOG00015005291) #30	shank2b (ENSSFOG00015005229) #31	acte1 (ENSSFOG00015000126)	ENSSFOG00015000093	guca1g (ENSSFOG00015023060)	ENSSFOG00015023039	zgc:101566 (ENSSFOG00015032927)
P. kingsleyae	MODERN SPECIES	23	ENSPKIG00000004897	GABARAPL2 (ENSPKIG00000004911)	adat1 (ENSPKIG00000004925)	wwp2 (ENSPKIG00000004994)	ENSPKIG00000005174	MATCAP1 (ENSPKIG00000005210)	polr2c (ENSPKIG00000005228)	ENSPKIG00000005253	arfgap2 (ENSPKIG00000005287)	ENSPKIG00000005352	ENSPKIG00000005384	large2 (ENSPKIG00000005425)	large2 (ENSPKIG00000005472)	tpcn2 (ENSPKIG00000005532) #20	ccnd1 (ENSPKIG00000005626) #22	ccnd1 (ENSPKIG00000005639) #22	fgf19 (ENSPKIG00000005648) #24	fgf4 (ENSPKIG00000005656) #25	fgf3 (ENSPKIG00000005674) #26	zgc:153993 (ENSPKIG00000005684)	ano1a (ENSPKIG00000005734) #28	FADD (ENSPKIG00000005864)	ENSPKIG00000005876	SPI1 (ENSPKIG00000005902)	mybpc3 (ENSPKIG00000005989)	MADD (ENSPKIG00000006383)	nr1h3 (ENSPKIG00000006820)
Osteoglossiformes	ANCESTRAL SPECIES	370															ENSGT00940000159763.a #20	ENSGT00940000157816.a.b.b #22	ENSGT00940000160601.j #24	ENSGT00940000158825.a #25	ENSGT00940000161128.c.a #26	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT01090000260003.a.a	ENSGT00390000015299.a.a.a.m	ENSGT00940000159754.b	ENSGT00940000157698.b.f	ENSGT00940000156718.c	ENSGT00940000159068.a
P. kingsleyae	MODERN SPECIES	23	chst6 (ENSPKIG00000004884)	ENSPKIG00000004897	GABARAPL2 (ENSPKIG00000004911)	adat1 (ENSPKIG00000004925)	wwp2 (ENSPKIG00000004994)	ENSPKIG00000005174	MATCAP1 (ENSPKIG00000005210)	polr2c (ENSPKIG00000005228)	ENSPKIG00000005253	arfgap2 (ENSPKIG00000005287)	ENSPKIG00000005352	ENSPKIG00000005384	large2 (ENSPKIG00000005425)	large2 (ENSPKIG00000005472)	tpcn2 (ENSPKIG00000005532) #20	ccnd1 (ENSPKIG00000005626) #22	ccnd1 (ENSPKIG00000005639) #22	fgf19 (ENSPKIG00000005648) #24	fgf4 (ENSPKIG00000005656) #25	fgf3 (ENSPKIG00000005674) #26	zgc:153993 (ENSPKIG00000005684)	ano1a (ENSPKIG00000005734) #28	FADD (ENSPKIG00000005864)	ENSPKIG00000005876	SPI1 (ENSPKIG00000005902)	mybpc3 (ENSPKIG00000005989)	MADD (ENSPKIG00000006383)	nr1h3 (ENSPKIG00000006820)
Asian bonytongue	MODERN SPECIES	11	srpk1b (ENSSFOG00015023536)	MAPK14 (ENSSFOG00015023518)	tmem167b (ENSSFOG00015028856)	GPR25 (ENSSFOG00015023506)	inavab (ENSSFOG00015023494)	ENSSFOG00015028066	ENSSFOG00015015939	lrrk2 (ENSSFOG00015015869)	SLC2A13 (ENSSFOG00015015834)	ABCD2 (ENSSFOG00015015804)	KIF21A (ENSSFOG00015015586)	ENSSFOG00015015520	CPNE8 (ENSSFOG00015011574)	tprkb (ENSSFOG00015011656)	ENSSFOG00015011682	ccnd1 (ENSSFOG00015011800) #22	fgf19 (ENSSFOG00015011821) #24	fgf3 (ENSSFOG00015011896) #26	ENSSFOG00015011921	ano1a (ENSSFOG00015011940) #28	ENSSFOG00015011991	SPI1 (ENSSFOG00015012011)	mybpc3 (ENSSFOG00015012236)	MADD (ENSSFOG00015013242)	nr1h3 (ENSSFOG00015013662)	KCNA4 (ENSSFOG00015013699)	ENSSFOG00015027310	ENSSFOG00015013725	bdnf (ENSSFOG00015013732)	lin7c (ENSSFOG00015033014)	lgr4 (ENSSFOG00015027064)
Clupeocephala	ANCESTRAL SPECIES	705																ENSGT00940000157816.a.b #22	ENSGT00940000166897
Euteleosteomorpha	ANCESTRAL SPECIES	532																ENSGT00940000157816.a.b #22	ENSGT00940000166897
Protacanthopterygii	ANCESTRAL SPECIES	373																ENSGT00940000157816.a.b #22	ENSGT00940000166897
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	46		ENSGT00950000183156.b.i	ENSGT00940000154285.b.b.c.b.b	ENSGT00940000160143.d	ENSGT00730000110960.b.a.b.a.a	ENSGT00940000154285.b.a.a.b.e.b	ENSGT00940000156113.s.b	ENSGT00940000158295.n	ENSGT00390000015672.d	ENSGT00940000166567.h	ENSGT00940000154285.b.a.b.e	ENSGT00940000154285.b.a.a.b.f.a	ENSGT00940000156939.e.d	ENSGT00390000000417.a.b.l #33	ENSGT00940000159763.p.b #20	ENSGT00940000157816.a.b.c #22	ENSGT00940000166897.d	ENSGT00940000160601 #24	ENSGT00940000158825.c.a #25	ENSGT00940000161128.e.a #26	ENSGT01090000260003.a.a.a.a	ENSGT00940000157182.g.b.a #28	ENSGT00390000002105.e	ENSGT00940000163716.c.a.a.b	ENSGT00940000160432.c.a.b	ENSGT00940000159573.f	ENSGT00390000008295.a.v	ENSGT00550000074901.d	ENSGT00940000159757.n	ENSGT00940000159836.a	ENSGT00940000158825.c.b #25
Salmoninae_a	ANCESTRAL SPECIES	47	ENSGT00940000164020.c.c	ENSGT00950000183156.b.j	ENSGT00940000160143.c	ENSGT00730000110960.b.a.a	ENSGT00940000154285.b.a.a.b.e.b	ENSGT00940000156113.s.b	ENSGT00940000158295.n	ENSGT00390000015672.d	ENSGT00940000166567.h	ENSGT00940000154285.b.a.b.e	ENSGT00940000154285.b.a.a.b.f.a	ENSGT00940000156939.e.d	ENSGT00390000000417.a.b.l #33	ENSGT00390000010152.b #34	ENSGT00940000159763.p.b #20	ENSGT00940000157816.a.b.c #22	ENSGT00940000166897.d	ENSGT00940000160601 #24	ENSGT00940000158825.c.a #25	ENSGT00940000161128.e.a #26	ENSGT01090000260003.a.a.a.a	ENSGT00940000157182.g.b.a #28	ENSGT00390000002105.e	ENSGT00940000163716.c.a.a.b	ENSGT00530000063956.b.b.e	ENSGT00940000158005.g	ENSGT00940000162264.d	ENSGT00940000160432.c.a.b	ENSGT00940000159573.f.b	ENSGT00390000008295.a.v	ENSGT00550000074901.d
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00950000183156.b.j	ENSGT00940000154285.b.b.c.a	ENSGT00940000160143.c	ENSGT00730000110960.b.a.a	ENSGT00940000154285.b.a.a.b.e.b	ENSGT00940000156113.s.b	ENSGT00940000158295.n	ENSGT00390000015672.d	ENSGT00940000166567.h	ENSGT00940000154285.b.a.b.e	ENSGT00940000154285.b.a.a.b.f.a	ENSGT00940000156939.e.d	ENSGT00390000000417.a.b.l #33	ENSGT00390000010152.b #34	ENSGT00940000159763.p.b #20	ENSGT00940000157816.a.b.c #22	ENSGT00940000166897.d	ENSGT00940000160601 #24	ENSGT00940000158825.c.a #25	ENSGT00940000161128.e.a #26	ENSGT01090000260003.a.a.a.a	ENSGT00940000157182.g.b.a #28	ENSGT00390000002105.e	ENSGT00940000163716.c.a.a.b.z	ENSGT00940000163716.c.a.b	ENSGT00390000000020.b.y	ENSGT01020000230346.E.a	ENSGT01050000244888.b.b.a.a	ENSGT00730000111696.a.a	ENSGT00940000153571.b.a	ENSGT00940000160226.d
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000164020.c.c	ENSGT00940000154285.b.b.c.a	ENSGT00940000160143.c	ENSGT00730000110960.b.a.a	ENSGT00940000154285.b.a.a.b.e.b	ENSGT00940000156113.s.b	ENSGT00940000158295.n	ENSGT00390000015672.d	ENSGT00940000166567.h	ENSGT00940000154285.b.a.b.e	ENSGT00940000154285.b.a.a.b.f.a	ENSGT00940000156939.e.d	ENSGT00390000000417.a.b.l #33	ENSGT00390000010152.b #34	ENSGT00940000159763.p.b #20	ENSGT00940000157816.a.b.c #22	ENSGT00940000166897.d	ENSGT00940000160601 #24	ENSGT00940000158825.c.a #25	ENSGT00940000161128.e.a #26	ENSGT01090000260003.a.a.a.a	ENSGT00940000157182.g.b.a #28	ENSGT00390000002105.e	ENSGT00940000163716.c.a.a.b.z	ENSGT00940000163716.c.a.a.b.y	ENSGT00940000163716.c.a.b	ENSGT00390000000020.b.y	ENSGT01020000230346.E.a	ENSGT01050000244888.b.b.a.a	ENSGT00730000111696.a.a	ENSGT00940000153571.b.a
Chinook salmon	MODERN SPECIES	28	ENSOTSG00005028608	DOK4 (ENSOTSG00005028607)	ccdc102a (ENSOTSG00005028605)	adgrg1 (ENSOTSG00005028604)	ENSOTSG00005028603	slc7a6 (ENSOTSG00005028360)	slc7a6os (ENSOTSG00005028358)	ENSOTSG00005028356	ENSOTSG00005028354	ENSOTSG00005028353	MMP15 (ENSOTSG00005028343)	ENSOTSG00005028339 #34	dhcr7 (ENSOTSG00005028338) #33	ENSOTSG00005028336 #34	tpcn2 (ENSOTSG00005028307) #20	ccnd1 (ENSOTSG00005028290) #22	lto1 (ENSOTSG00005028286)	fgf19 (ENSOTSG00005028284) #24	fgf4 (ENSOTSG00005028280) #25	fgf3 (ENSOTSG00005028277) #26	zgc:153993 (ENSOTSG00005028274)	ano1a (ENSOTSG00005023707) #28	ENSOTSG00005023695	FADD (ENSOTSG00005023692)	mtch2 (ENSOTSG00005022896)	psmc3 (ENSOTSG00005022687)	aplnr2 (ENSOTSG00005022686)	cd59 (ENSOTSG00005022685)	fbxo3 (ENSOTSG00005022682)	syt13 (ENSOTSG00005022676)	ENSOTSG00005022675
Coho salmon	MODERN SPECIES	22	DOK4 (ENSOKIG00005004960)	ENSOKIG00005004950	ccdc102a (ENSOKIG00005013582)	adgrg1 (ENSOKIG00005013548)	ENSOKIG00005013526	slc7a6 (ENSOKIG00005013426)	slc7a6os (ENSOKIG00005013387)	ENSOKIG00005013356	ENSOKIG00005013338	ENSOKIG00005013324	MMP15 (ENSOKIG00005013166)	dhcr7 (ENSOKIG00005013114) #33	nadsyn1 (ENSOKIG00005013082) #34	ENSOKIG00005013058 #34	tpcn2 (ENSOKIG00005011812) #20	ccnd1 (ENSOKIG00005011664) #22	lto1 (ENSOKIG00005011643)	fgf19 (ENSOKIG00005011633) #24	fgf4 (ENSOKIG00005011614) #25	fgf3 (ENSOKIG00005011598) #26	zgc:153993 (ENSOKIG00005011583)	ano1a (ENSOKIG00005011383) #28	FADD (ENSOKIG00005011355)	ENSOKIG00005011338	ENSOKIG00005011284	ENSOKIG00005011213	MTCH2 (ENSOKIG00005010764)	PSMC3 (ENSOKIG00005010496)	aplnr2 (ENSOKIG00005010472)	cd59 (ENSOKIG00005010465)	fbxo3 (ENSOKIG00005010421)
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000002394	DOK4 (ENSOMYG00000002230)	ccdc102a (ENSOMYG00000002197)	adgrg1 (ENSOMYG00000002130)	slc7a6 (ENSOMYG00000002068)	slc7a6os (ENSOMYG00000001946)	ENSOMYG00000001907	ENSOMYG00000001862	ENSOMYG00000001834	ENSOMYG00000001758	ENSOMYG00000061042	dhcr7 (ENSOMYG00000001733) #33	nadsyn1 (ENSOMYG00000001674) #34	ENSOMYG00000001647 #34	tpcn2 (ENSOMYG00000001514) #20	ccnd1 (ENSOMYG00000001255) #22	fgf19 (ENSOMYG00000001235) #24	fgf4 (ENSOMYG00000001224) #25	fgf3 (ENSOMYG00000001218) #26	zgc:153993 (ENSOMYG00000001204)	ano1a (ENSOMYG00000016890) #28	FADD (ENSOMYG00000016741)	ENSOMYG00000016692	ENSOMYG00000016675	ENSOMYG00000016626	ENSOMYG00000016511	aplnr2 (ENSOMYG00000070050)	cd59 (ENSOMYG00000062192)	fbxo3 (ENSOMYG00000016481)	ENSOMYG00000016474	ENSOMYG00000016465
Salmo	ANCESTRAL SPECIES	30	ENSGT00950000183156.b.j	ENSGT00940000154285.b.b.c.b.a	ENSGT00940000160143.c	ENSGT00730000110960.b.a.a	ENSGT00940000154285.b.a.a.b.e.b	ENSGT00940000156113.s.b	ENSGT00940000158295.n	ENSGT00390000015672.d	ENSGT00940000166567.h	ENSGT00940000154285.b.a.b.e	ENSGT00940000154285.b.a.a.b.f.a	ENSGT00940000156939.e.d	ENSGT00390000000417.a.b.l #33	ENSGT00390000010152.b #34	ENSGT00940000159763.p.b #20	ENSGT00940000157816.a.b.c #22	ENSGT00940000166897.d	ENSGT00940000160601 #24	ENSGT00940000158825.c.a #25	ENSGT00940000161128.e.a #26	ENSGT01090000260003.a.a.a.a	ENSGT00940000157182.g.b.a #28	ENSGT00390000002105.e	ENSGT00940000163716.c.a.a.b	ENSGT00940000154856.A.a.c.a.a.k	ENSGT00940000161051.a.a.b.b.b.a.p	ENSGT00940000154856.A.a.c.a.b.a.b.b	ENSGT00940000154856.A.a.c.a.a.l	ENSGT00390000000020.b.y	ENSGT01020000230346.E.a	ENSGT01050000244888.b.b.a.a
Atlantic salmon	MODERN SPECIES	18	ENSSSAG00000056205	ENSSSAG00000053637	ENSSSAG00000092140	ENSSSAG00000053606	DOK4 (ENSSSAG00000067446)	ENSSSAG00000053582	adgrg1 (ENSSSAG00000088527)	slc7a6os (ENSSSAG00000053552)	slc7a6 (ENSSSAG00000053557)	ENSSSAG00000053548	ENSSSAG00000053530	ENSSSAG00000053435	ENSSSAG00000086305 #33	nadsyn1 (ENSSSAG00000053303) #34	tpcn2 (ENSSSAG00000053215) #20	ccnd1 (ENSSSAG00000082383) #22	lto1 (ENSSSAG00000053185)	fgf4 (ENSSSAG00000053180) #25	fgf3 (ENSSSAG00000109242) #26	BAX (ENSSSAG00000053164)	ano1a (ENSSSAG00000043408) #28	ENSSSAG00000103946	ENSSSAG00000043164	hce2 (ENSSSAG00000043141)	ENSSSAG00000084746	lce (ENSSSAG00000112923)	ENSSSAG00000033317	mtch2 (ENSSSAG00000043064)	ENSSSAG00000042508	aplnr2 (ENSSSAG00000042495)	cd59 (ENSSSAG00000042007)
Huchen	MODERN SPECIES	141															tpcn2 (ENSHHUG00000032520) #20	ccnd1 (ENSHHUG00000032532) #22	lto1 (ENSHHUG00000032541)	fgf19 (ENSHHUG00000032549) #24	fgf4 (ENSHHUG00000032552) #25	fgf3 (ENSHHUG00000032555) #26	zgc:153993 (ENSHHUG00000032560)	ano1a (ENSHHUG00000032586) #28	FADD (ENSHHUG00000033094)	ENSHHUG00000033099	ENSHHUG00000033121	ENSHHUG00000033147	mtch2 (ENSHHUG00000033173)	psmc3 (ENSHHUG00000033204)	aplnr2 (ENSHHUG00000033233)	cd59 (ENSHHUG00000033237)	fbxo3 (ENSHHUG00000033251)
Salmoninae	ANCESTRAL SPECIES	361				ENSGT00730000110960.b.a.b.b	ENSGT00940000154285.b.a.a.b.e.a	ENSGT00940000156113.s.a	ENSGT00940000158295.m	ENSGT00390000015672.c	ENSGT00940000166567.g	ENSGT00940000154285.b.a.b.f	ENSGT00940000154285.b.a.a.b.f.b	ENSGT00940000156939.e.c	ENSGT00390000000417.a.b.k #33	ENSGT00390000010152 #34	ENSGT00940000159763.p.a #20	ENSGT00940000157816.a.b.d #22	ENSGT00940000166897.c	ENSGT00390000017697.b.eb.a.b	ENSGT00940000154848.b.c.b	ENSGT00940000154511.a.g.a	ENSGT00950000182909.b.b.b.q.a	ENSGT00390000008797.d	ENSGT00940000157348.t	ENSGT00390000012337.f	ENSGT00390000017259.bb.a	ENSGT00940000157787.e	ENSGT00510000047505.i	ENSGT00940000161325.p	ENSGT00950000183176.b.e.w.a	ENSGT00940000157000.m	ENSGT00940000160118.h
Huchen	MODERN SPECIES	922																ccnd1 (ENSHHUG00000027197) #22	lto1 (ENSHHUG00000027210)	fgf19 (ENSHHUG00000027218) #24	ciao2b (ENSHHUG00000027227)	ENSHHUG00000027303	ENSHHUG00000027895	RNF166 (ENSHHUG00000027899)	ctu2 (ENSHHUG00000027903)	PIEZO1 (ENSHHUG00000027951)	CDT1 (ENSHHUG00000028269)	galns (ENSHHUG00000028278)	trappc2l (ENSHHUG00000028296)	PABPN1L (ENSHHUG00000028326)	CBFA2T3 (ENSHHUG00000028328)	ENSHHUG00000028358	ACSF3 (ENSHHUG00000028365)
Salmoninae_a	ANCESTRAL SPECIES	76	ENSGT00950000183156.b.i	ENSGT00940000154285.b.b.c.b.b	ENSGT00940000160143.d	ENSGT00730000110960.b.a.b.a.a	ENSGT00940000154285.b.a.a.b.e.a	ENSGT00940000156113.s.a	ENSGT00940000158295.m	ENSGT00390000015672.c	ENSGT00940000166567.g	ENSGT00940000154285.b.a.b.f	ENSGT00940000154285.b.a.a.b.f.b	ENSGT00940000156939.e.c	ENSGT00390000000417.a.b.k #33	ENSGT00390000010152.a #34	ENSGT00940000159763.p.a #20	ENSGT00940000157816.a.b.d #22	ENSGT00940000166897.c	ENSGT00390000017697.b.eb.a.b	ENSGT00940000154848.b.c.b	ENSGT00940000154511.a.g.a	ENSGT00950000182909.b.b.b.q.a.a	ENSGT00390000008797.d	ENSGT00940000157348.t	ENSGT00390000012337.f	ENSGT00390000017259.bb.a	ENSGT00940000157787.e	ENSGT00510000047505.i	ENSGT00940000161325.p.b	ENSGT00950000183176.b.e.w.b.a	ENSGT00940000157000.m	ENSGT00940000160118.h
Oncorhynchus	ANCESTRAL SPECIES	32	ENSGT00950000183156.b.i	ENSGT00940000160143.d	ENSGT00730000110960.b.b	ENSGT00730000110960.b.a.b.b	ENSGT00940000154285.b.a.a.b.e.a	ENSGT00940000156113.s.a	ENSGT00940000158295.m	ENSGT00390000015672.c	ENSGT00940000166567.g	ENSGT00940000154285.b.a.b.f	ENSGT00940000154285.b.a.a.b.f.b	ENSGT00940000156939.e.c	ENSGT00390000000417.a.b.k #33	ENSGT00390000010152.a #34	ENSGT00940000159763.p.a #20	ENSGT00940000157816.a.b.d #22	ENSGT00940000166897.c	ENSGT00390000017697.b.eb.a.b	ENSGT00940000154848.b.c.b	ENSGT00940000154511.a.g.a	ENSGT00950000182909.b.b.b.q.a.a	ENSGT00950000182909.b.b.b.r	ENSGT00390000008797.d	ENSGT00940000157348.t	ENSGT00390000012337.f	ENSGT00390000017259.bb.a	ENSGT00940000157787.e	ENSGT00510000047505.i	ENSGT00940000161325.p.b	ENSGT00950000183176.b.e.w.b.a	ENSGT00940000157000.m
Rainbow trout	MODERN SPECIES	18	ENSOMYG00000073257	ENSOMYG00000061731	ENSOMYG00000036970	DOK4 (ENSOMYG00000037280)	ENSOMYG00000037300	adgrg1 (ENSOMYG00000037317)	ENSOMYG00000037340	slc7a6 (ENSOMYG00000037439)	slc7a6os (ENSOMYG00000037648)	ENSOMYG00000053770	ENSOMYG00000037718	ENSOMYG00000037739 #33	nadsyn1 (ENSOMYG00000037829) #34	tpcn2 (ENSOMYG00000038011) #20	ENSOMYG00000066369	ENSOMYG00000038167 #22	lto1 (ENSOMYG00000038146)	ciao2b (ENSOMYG00000038177)	ENSOMYG00000038855	ENSOMYG00000041324	RNF166 (ENSOMYG00000054129)	ctu2 (ENSOMYG00000041336)	PIEZO1 (ENSOMYG00000041383)	CDT1 (ENSOMYG00000041432)	aprt (ENSOMYG00000041443)	galns (ENSOMYG00000041454)	trappc2l (ENSOMYG00000041458)	PABPN1L (ENSOMYG00000041475)	CBFA2T3 (ENSOMYG00000041484)	ENSOMYG00000063445	ACSF3 (ENSOMYG00000041503)
Oncorhynchus_a	ANCESTRAL SPECIES	28	ENSGT00940000164020.c.d	ENSGT00950000183156.b.i	ENSGT00940000160143.d	ENSGT00730000110960.b.a.b.b	ENSGT00940000154285.b.a.a.b.e.a	ENSGT00940000156113.s.a	ENSGT00940000158295.m	ENSGT00390000015672.c	ENSGT00940000166567.g	ENSGT00940000154285.b.a.b.f	ENSGT00940000154285.b.a.a.b.f.b	ENSGT00940000156939.e.c	ENSGT00390000000417.a.b.k #33	ENSGT00390000010152.a #34	ENSGT00940000159763.p.a #20	ENSGT00940000157816.a.b.d #22	ENSGT00940000166897.c	ENSGT00390000017697.b.eb.a.a	ENSGT00940000154848.b.c.b	ENSGT00940000154511.a.g.a	ENSGT00950000182909.b.b.b.q.a.a	ENSGT00390000008797.d	ENSGT00940000157348.t	ENSGT00390000012337.f	ENSGT00390000017259.bb.a	ENSGT00940000157787.e	ENSGT00510000047505.i	ENSGT00940000161325.p.b	ENSGT00950000183176.b.e.w.b.a	ENSGT00940000157000.m	ENSGT00940000160118.h
Coho salmon	MODERN SPECIES	28	DPY19L3 (ENSOKIG00005009944)	ENSOKIG00005010057	ENSOKIG00005010186	DOK4 (ENSOKIG00005010376)	ENSOKIG00005010387	ccdc102a (ENSOKIG00005010395)	adgrg1 (ENSOKIG00005010417)	ENSOKIG00005010452	slc7a6 (ENSOKIG00005010484)	slc7a6os (ENSOKIG00005010649)	ENSOKIG00005010658	ENSOKIG00005010669	MMP15 (ENSOKIG00005010694)	dhcr7 (ENSOKIG00005010778) #33	tpcn2 (ENSOKIG00005010826) #20	CCND1 (ENSOKIG00005010929) #22	lto1 (ENSOKIG00005010951)	CIAO2B (ENSOKIG00005010965)	ENSOKIG00005011040	ENSOKIG00005012121	RNF166 (ENSOKIG00005012129)	ctu2 (ENSOKIG00005012143)	PIEZO1 (ENSOKIG00005012256)	CDT1 (ENSOKIG00005013468)	aprt (ENSOKIG00005013478)	galns (ENSOKIG00005013489)	trappc2l (ENSOKIG00005013531)	PABPN1L (ENSOKIG00005013564)	CBFA2T3 (ENSOKIG00005013581)	ACSF3 (ENSOKIG00005013666)	cdh15 (ENSOKIG00005014179)
Chinook salmon	MODERN SPECIES	3	ccne1 (ENSOTSG00005015082)	ZNF536 (ENSOTSG00005015086)	ENSOTSG00005015089	DOK4 (ENSOTSG00005015423)	ENSOTSG00005015424	ccdc102a (ENSOTSG00005015425)	adgrg1 (ENSOTSG00005015426)	ENSOTSG00005015429	slc7a6 (ENSOTSG00005015442)	slc7a6os (ENSOTSG00005016603)	ENSOTSG00005016604	MMP15 (ENSOTSG00005016605)	dhcr7 (ENSOTSG00005016606) #33	nadsyn1 (ENSOTSG00005016607) #34	tpcn2 (ENSOTSG00005016612) #20	ccnd1 (ENSOTSG00005016695) #22	lto1 (ENSOTSG00005016697)	ciao2b (ENSOTSG00005016700)	ENSOTSG00005016709	ACSF3 (ENSOTSG00005019787)	cdh15 (ENSOTSG00005019833)	SPG7 (ENSOTSG00005019864)	ANKRD11 (ENSOTSG00005023481)	SLC22A31 (ENSOTSG00005023520)	dpep1 (ENSOTSG00005023522)	sult5a1 (ENSOTSG00005023526)	hpxa (ENSOTSG00005023528)	ENSOTSG00005023530	ENSOTSG00005023531	ENSOTSG00005023532	dhodh (ENSOTSG00005023533)
Salmo	ANCESTRAL SPECIES	27	ENSGT00530000063023.A.a.m	ENSGT00950000183156.b.i	ENSGT00940000154285.b.b.c.b.b	ENSGT00940000160143.d	ENSGT00730000110960.b.a.b.a.a	ENSGT00940000154285.b.a.a.b.e.a	ENSGT00940000156113.s.a	ENSGT00940000158295.m	ENSGT00390000015672.c	ENSGT00940000166567.g	ENSGT00940000154285.b.a.b.f	ENSGT00940000156939.e.c	ENSGT00390000000417.a.b.k #33	ENSGT00390000010152.a #34	ENSGT00940000159763.p.a #20	ENSGT00940000157816.a.b.d #22	ENSGT00940000166897.c	ENSGT00390000017697.b.eb.b.b	ENSGT00940000154848.b.c.b	ENSGT00940000154511.a.g.a	ENSGT00950000182909.b.b.b.q.a.a	ENSGT00390000008797.d	ENSGT00940000157348.t	ENSGT00390000012337.f	ENSGT00390000017259.bb.a	ENSGT00940000157787.e	ENSGT00510000047505.i	ENSGT00940000161325.p.b	ENSGT00950000183176.b.e.w.b.a	ENSGT00940000157000.m	ENSGT00940000160118.h
River trout	MODERN SPECIES	3	ENSSTUG00000000947	ENSSTUG00000001464	ENSSTUG00000001811	DOK4 (ENSSTUG00000001853)	ccdc102a (ENSSTUG00000001872)	adgrg1 (ENSSTUG00000001900)	ENSSTUG00000001908	slc7a6 (ENSSTUG00000001924)	slc7a6os (ENSSTUG00000002070)	ENSSTUG00000002082	MMP15 (ENSSTUG00000002121)	dhcr7 (ENSSTUG00000002389) #33	nadsyn1 (ENSSTUG00000002449) #34	tpcn2 (ENSSTUG00000002487) #20	ENSSTUG00000002558	ccnd1 (ENSSTUG00000002561) #22	lto1 (ENSSTUG00000002591)	ciao2b (ENSSTUG00000002626)	ENSSTUG00000002748	ENSSTUG00000004999	RNF166 (ENSSTUG00000005006)	ctu2 (ENSSTUG00000005038)	PIEZO1 (ENSSTUG00000005320)	CDT1 (ENSSTUG00000006636)	aprt (ENSSTUG00000006682)	galns (ENSSTUG00000006687)	trappc2l (ENSSTUG00000006731)	PABPN1L (ENSSTUG00000006789)	CBFA2T3 (ENSSTUG00000006803)	ACSF3 (ENSSTUG00000006817)	cdh15 (ENSSTUG00000006850)
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000067434	DOK4 (ENSSSAG00000088848)	ccdc102a (ENSSSAG00000067556)	adgrg1 (ENSSSAG00000067566)	ENSSSAG00000067569	slc7a6 (ENSSSAG00000067592)	slc7a6os (ENSSSAG00000068214)	ENSSSAG00000068220	ENSSSAG00000068215	ENSSSAG00000093989	ENSSSAG00000105034	dhcr7 (ENSSSAG00000090510) #33	nadsyn1 (ENSSSAG00000068295) #34	ENSSSAG00000102017	tpcn2 (ENSSSAG00000070595) #20	ENSSSAG00000108373 #22	lto1 (ENSSSAG00000071982)	ENSSSAG00000071996	ENSSSAG00000072016	ENSSSAG00000066114	RNF166 (ENSSSAG00000072323)	ctu2 (ENSSSAG00000072330)	PIEZO1 (ENSSSAG00000072401)	CDT1 (ENSSSAG00000072506)	aprt (ENSSSAG00000111408)	galns (ENSSSAG00000072515)	PABPN1L (ENSSSAG00000072555)	trappc2l (ENSSSAG00000072525)	CBFA2T3 (ENSSSAG00000109906)	ACSF3 (ENSSSAG00000072585)	cdh15 (ENSSSAG00000072707)
Northern pike	MODERN SPECIES	1	ENSELUG00000020120	ENSELUG00000020137	DOK4 (ENSELUG00000020178)	ccdc102a (ENSELUG00000020229)	adgrg1 (ENSELUG00000020340)	ENSELUG00000020358	ENSELUG00000033053	slc7a6 (ENSELUG00000020394)	slc7a6os (ENSELUG00000020417)	ENSELUG00000020428	ENSELUG00000020444	MMP15 (ENSELUG00000000929)	dhcr7 (ENSELUG00000021170) #33	nadsyn1 (ENSELUG00000021225) #34	tpcn2 (ENSELUG00000021249) #20	ccnd1 (ENSELUG00000021257) #22	lto1 (ENSELUG00000021306)	ENSELUG00000026883	fgf19 (ENSELUG00000021326) #24	fgf4 (ENSELUG00000021335) #25	fgf3 (ENSELUG00000021345) #26	zgc:153993 (ENSELUG00000021385)	ano1a (ENSELUG00000021508) #28	fadd (ENSELUG00000021554)	ENSELUG00000021737	ENSELUG00000021796	psmc3 (ENSELUG00000021855)	mtch2 (ENSELUG00000021936)	c6ast1 (ENSELUG00000022020)	aplnr2 (ENSELUG00000022102)	cd59 (ENSELUG00000033184)
Acanthomorphata	ANCESTRAL SPECIES	343																ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825.c #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	143								ENSGT00390000009505	ENSGT00940000160007	ENSGT00390000007370	ENSGT00390000007315	ENSGT00940000163206.a	ENSGT00940000166163	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897
Pinecone sodierfish	MODERN SPECIES	17	tmem208 (ENSMMDG00005013549)	ABCC12 (ENSMMDG00005013387)	zgc:165481 (ENSMMDG00005013378)	cep89 (ENSMMDG00005013375)	rhpn2 (ENSMMDG00005012374)	slc7a10a (ENSMMDG00005012358)	lrp3 (ENSMMDG00005012355)	zgc:92818 (ENSMMDG00005012354)	mylk3 (ENSMMDG00005012352)	orc6 (ENSMMDG00005012351)	vps35 (ENSMMDG00005012005)	hrh3 (ENSMMDG00005011947)	shcbp1 (ENSMMDG00005011760)	uqcrfs1 (ENSMMDG00005011753)	vstm2b (ENSMMDG00005011752)	ccnd1 (ENSMMDG00005011749) #22	lto1 (ENSMMDG00005011746)	ENSMMDG00005011744	MAPK8IP1 (ENSMMDG00005011743)	lrp4 (ENSMMDG00005011593)	ENSMMDG00005000755	NELL1 (ENSMMDG00005000287)	slc6a5 (ENSMMDG00005000196)	prmt3 (ENSMMDG00005000132)	htatip2 (ENSMMDG00005000108)	dbx1a (ENSMMDG00005000101)	ENSMMDG00005023868	NAV2 (ENSMMDG00005023843)	e2f8 (ENSMMDG00005023830)	csrp3 (ENSMMDG00005023826)	zdhhc13 (ENSMMDG00005023737)
Percomorphaceae	ANCESTRAL SPECIES	166														ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00390000009077.c	ENSGT00950000182838.A.a.b	ENSGT00950000182885.A.a.e	ENSGT00940000158805.a	ENSGT00940000159515.c.b	ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000154856.A.a.c.a.a	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00940000154170.B
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00390000009077.c	ENSGT00950000182838.A.a.b	ENSGT00950000182885.A.a.e	ENSGT00940000158805.a	ENSGT00940000159515.c.b	ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000154856.A.a.c.a.a	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000161051.a.a.b.b.b.b.f	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00390000000020.b	ENSGT00390000006876
Eupercaria	ANCESTRAL SPECIES	18						ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00940000154170.B	ENSGT00530000063760.a
Tetraodontidae	ANCESTRAL SPECIES	273																ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26
Fugu	MODERN SPECIES	4	ENSTRUG00000019679	ENSTRUG00000028997	ENSTRUG00000032511	ENSTRUG00000033010	uqcrfs1 (ENSTRUG00000015996)	sdr42e1 (ENSTRUG00000015985)	wtip (ENSTRUG00000024569)	gpib (ENSTRUG00000015872)	GARRE1 (ENSTRUG00000015836)	ss18l2 (ENSTRUG00000026985)	lsm14ab (ENSTRUG00000015798)	ENSTRUG00000015791	KCTD15 (ENSTRUG00000015783)	CHST8 (ENSTRUG00000020165)	ENSTRUG00000029359	ccnd1 (ENSTRUG00000015754) #22	lto1 (ENSTRUG00000026152)	fgf3 (ENSTRUG00000027654) #26	ENSTRUG00000015724	THSD4 (ENSTRUG00000028384)	ENSTRUG00000024847	ENSTRUG00000024639	ENSTRUG00000024094	fam219b (ENSTRUG00000022531)	cox5aa (ENSTRUG00000015647)	SNAP25 (ENSTRUG00000015620)	LRRC28 (ENSTRUG00000015594)	igf1rb (ENSTRUG00000015459)	ap3s2 (ENSTRUG00000015431)	ANPEP (ENSTRUG00000015317)	ANPEP (ENSTRUG00000023856)
Tetraodon	MODERN SPECIES	26	NPC1L1 (ENSTNIG00000003774)	fzd10 (ENSTNIG00000005797)	RICTOR (ENSTNIG00000005747)	anxa1a (ENSTNIG00000014199)	tmc2b (ENSTNIG00000014200)	zfand5a (ENSTNIG00000004321)	snrnp200 (ENSTNIG00000004320)	ciao1 (ENSTNIG00000004319)	tmem127 (ENSTNIG00000004318)	ENSTNIG00000000350	ACAP3 (ENSTNIG00000003965)	shcbp1 (ENSTNIG00000005255)	spg21 (ENSTNIG00000005256)	ENSTNIG00000001091	uqcrfs1 (ENSTNIG00000014195)	ccnd1 (ENSTNIG00000014196) #22	fgf3 (ENSTNIG00000014197) #26	zgc:153993 (ENSTNIG00000014198)	ENSTNIG00000005750	ENSTNIG00000006101	ENSTNIG00000006100	ENSTNIG00000004524	mtch2 (ENSTNIG00000007028)	ENSTNIG00000007027	ENSTNIG00000006399	ANO9 (ENSTNIG00000006400)	pop4 (ENSTNIG00000006401)	tpcn2 (ENSTNIG00000003409) #20	nadsyn1 (ENSTNIG00000003408) #34	ccdc102a (ENSTNIG00000003407)	txlng (ENSTNIG00000003406)
Eupecaria_A	ANCESTRAL SPECIES	18						ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00940000154170.B	ENSGT00530000063760.a
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	41																ccnd1 (ENSLBEG00000020370) #22	lto1 (ENSLBEG00000020392)	fgf3 (ENSLBEG00000020405) #26	fgf4 (ENSLBEG00000020420) #25	fgf19 (ENSLBEG00000020439) #24	cd81a (ENSLBEG00000020484)	mthfs (ENSLBEG00000020515)	MINAR1 (ENSLBEG00000020533)	ADAMTS17 (ENSLBEG00000020564)	CERS3 (ENSLBEG00000020633)	ENSLBEG00000020658	asb7 (ENSLBEG00000020690)	aldh1a3 (ENSLBEG00000020705)	LRRK1 (ENSLBEG00000020772)	chsy1 (ENSLBEG00000020843)	selenos (ENSLBEG00000020861)
Ballan wrasse	MODERN SPECIES	1759																ccnd1 (ENSLBEG00000019415) #22	lto1 (ENSLBEG00000019462)
Eupecaria_B	ANCESTRAL SPECIES	18					ENSGT00940000158300.f	ENSGT00390000011846	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000161051.a.a.b.b.b.b.f	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00940000154170.B	ENSGT00530000063760.a
Perciformes	ANCESTRAL SPECIES	35	ENSGT00940000163235.A.a.b.b	ENSGT01040000240607	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000177138	ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT00390000007315	ENSGT00390000009505	ENSGT00940000159061	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104
Perciformes_a	ANCESTRAL SPECIES	42	ENSGT00940000163235.A.a.b.b	ENSGT01040000240607	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000177138	ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT00390000007315	ENSGT00390000009505	ENSGT00940000159061	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104
Pike perch	MODERN SPECIES	114	chst1 (ENSSLUG00000014847)	spg21 (ENSSLUG00000014850)	pdcd7 (ENSSLUG00000014857)	UBAP1L (ENSSLUG00000014860)	KBTBD13 (ENSSLUG00000014865)	rasl12 (ENSSLUG00000014866)	ENSSLUG00000014867	uqcrfs1 (ENSSLUG00000014873)	ENSSLUG00000014879	ENSSLUG00000014881	ENSSLUG00000014885	ENSSLUG00000014889	vstm2b (ENSSLUG00000014902)	ENSSLUG00000014905	ENSSLUG00000014912	ccnd1 (ENSSLUG00000014920) #22	lto1 (ENSSLUG00000014924)	ENSSLUG00000014929	fgf3 (ENSSLUG00000014940) #26	fgf4 (ENSSLUG00000014982) #25	ENSSLUG00000015033	fgf19 (ENSSLUG00000015035) #24	vps35 (ENSSLUG00000015055)	zgc:92818 (ENSSLUG00000015468)	mtfmt (ENSSLUG00000015479)	celf1 (ENSSLUG00000015532)	tollip (ENSSLUG00000015968)	ENSSLUG00000016049	ENSSLUG00000016052	MINAR1 (ENSSLUG00000016059)
Channel bull blenny	MODERN SPECIES	17	ENSCGOG00000000695	ENSCGOG00000000686	ENSCGOG00000000685	ENSCGOG00000000684	ENSCGOG00000000679	ENSCGOG00000000676	ANO9 (ENSCGOG00000000649)	ENSCGOG00000000642	shcbp1 (ENSCGOG00000000509)	spg21 (ENSCGOG00000018375)	PDCD7 (ENSCGOG00000018370)	ENSCGOG00000018366	KBTBD13 (ENSCGOG00000018364)	uqcrfs1 (ENSCGOG00000018356)	vstm2b (ENSCGOG00000018355)	ccnd1 (ENSCGOG00000018348) #22	lto1 (ENSCGOG00000018345)	fgf3 (ENSCGOG00000018344) #26	fgf4 (ENSCGOG00000018342) #25	fgf19 (ENSCGOG00000018336) #24	vps35 (ENSCGOG00000018150)	zgc:92818 (ENSCGOG00000018140)	gpt2 (ENSCGOG00000017246)	mtfmt (ENSCGOG00000017216)	celf1 (ENSCGOG00000016375)	tollip (ENSCGOG00000016239)	ENSCGOG00000016233	MINAR1 (ENSCGOG00000016232)	ADAMTS17 (ENSCGOG00000016227)	CERS3 (ENSCGOG00000016216)	ENSCGOG00000016214
Cottioidei	ANCESTRAL SPECIES	62	ENSGT00940000166109	ENSGT00940000153289.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000156076.a.b	ENSGT00940000163235.E.l	ENSGT00940000162219	ENSGT00940000158300.f	ENSGT00390000011846	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT00390000007315	ENSGT00390000009505	ENSGT00940000159061	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104
Stickleback	MODERN SPECIES	1	snrpa1 (ENSGACG00000014092)	ENSGACG00000014095	ENSGACG00000014099	ENSGACG00000014109	ANO9 (ENSGACG00000014114)	ENSGACG00000014125	shcbp1 (ENSGACG00000014127)	spg21 (ENSGACG00000014130)	PDCD7 (ENSGACG00000014146)	ENSGACG00000014148	ENSGACG00000014151	ENSGACG00000014152	ENSGACG00000014153	uqcrfs1 (ENSGACG00000014155)	vstm2b (ENSGACG00000014160)	ccnd1 (ENSGACG00000014165) #22	ENSGACG00000014179	lto1 (ENSGACG00000014182)	fgf3 (ENSGACG00000014186) #26	fgf4 (ENSGACG00000014187) #25	fgf19 (ENSGACG00000014191) #24	vps35 (ENSGACG00000014193)	zgc:92818 (ENSGACG00000014211)	gpt2 (ENSGACG00000014217)	mtfmt (ENSGACG00000014220)	celf1 (ENSGACG00000014226)	ENSGACG00000014232	ZNF536 (ENSGACG00000014234)	tshz3b (ENSGACG00000014236)	ZNF507 (ENSGACG00000014238)	DPY19L3 (ENSGACG00000014242)
Lumpfish	MODERN SPECIES	18	ENSCLMG00005016217	ENSCLMG00005016220	ENSCLMG00005016224	ENSCLMG00005016232	ANO9 (ENSCLMG00005016239)	ENSCLMG00005016245	ENSCLMG00005016247	shcbp1 (ENSCLMG00005016250)	spg21 (ENSCLMG00005016319)	pdcd7 (ENSCLMG00005016320)	KBTBD13 (ENSCLMG00005016321)	rasl12 (ENSCLMG00005016322)	uqcrfs1 (ENSCLMG00005016323)	vstm2b (ENSCLMG00005016325)	ENSCLMG00005016326	ccnd1 (ENSCLMG00005016327) #22	ENSCLMG00005016328	fgf3 (ENSCLMG00005016329) #26	fgf4 (ENSCLMG00005000022) #25	fgf19 (ENSCLMG00005000033) #24	vps35 (ENSCLMG00005000043)	zgc:92818 (ENSCLMG00005000060)	gpt2 (ENSCLMG00005000199)	mtfmt (ENSCLMG00005000621)	ENSCLMG00005000626	ADAMTS17 (ENSCLMG00005000636)	ENSCLMG00005000668	ENSCLMG00005000669	EFL1 (ENSCLMG00005000670)	mex3b (ENSCLMG00005000700)	TMC3 (ENSCLMG00005000704)
Eupecaria_C	ANCESTRAL SPECIES	21									ENSGT00940000158300.f	ENSGT00390000011846	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00940000161629.a	ENSGT00390000001014.`b.a	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000161051.a.a.b.b.b.b.f	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00940000154170.B	ENSGT00530000063760.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	18																ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000161051.a.a.b.b.b.b.f	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00940000154170.B	ENSGT00530000063760.a
European seabass	MODERN SPECIES	18	ENSDLAG00005012307	tcf7l1a (ENSDLAG00005014881)	ENSDLAG00005032993	ENSDLAG00005010546	ENSDLAG00005019720	ENSDLAG00005019828	ENSDLAG00005019858	ENSDLAG00005028917	ENSDLAG00005030736	ENSDLAG00005033347	ENSDLAG00005020221	ENSDLAG00005020231	ENSDLAG00005005856	ENSDLAG00005026641	ENSDLAG00005031005	ENSDLAG00005020248 #22	ENSDLAG00005030908	ENSDLAG00005029872	fgf3 (ENSDLAG00005020264) #26	ENSDLAG00005020271 #25	fgf19 (ENSDLAG00005034144) #24	ENSDLAG00005020284	ENSDLAG00005033490 #28	ENSDLAG00005003097	ENSDLAG00005020443	ENSDLAG00005020302	ENSDLAG00005034986	ENSDLAG00005009183	ENSDLAG00005020465	ENSDLAG00005034006	ENSDLAG00005030971
Large yellow croaker	MODERN SPECIES		ENSLCRG00005018960	SLITRK2 (ENSLCRG00005018962)	ENSLCRG00005018963	ENSLCRG00005018967	SCOC (ENSLCRG00005018971)	mgst2 (ENSLCRG00005018973)	setd7 (ENSLCRG00005018975)	zgc:113425 (ENSLCRG00005018976)	rab33ba (ENSLCRG00005018977)	hspa9 (ENSLCRG00005018991)	ENSLCRG00005019473	ENSLCRG00005019475	ENSLCRG00005019476	ENSLCRG00005019477	ENSLCRG00005019478	ccnd1 (ENSLCRG00005019479) #22	ENSLCRG00005019480	ENSLCRG00005019481	septin6 (ENSLCRG00005019483)	fgf3 (ENSLCRG00005019485) #26	fgf4 (ENSLCRG00005019486) #25	fgf19 (ENSLCRG00005001435) #24	zgc:153993 (ENSLCRG00005001448)	ano1a (ENSLCRG00005001882) #28	ENSLCRG00005005963	ENSLCRG00005005964	ENSLCRG00005005966	npsn (ENSLCRG00005005970)	ENSLCRG00005005972	mtch2 (ENSLCRG00005005976)	znf414 (ENSLCRG00005005991)
Gilthead seabream	MODERN SPECIES	18	ENSSAUG00010006322	ccdc102a (ENSSAUG00010006324)	ENSSAUG00010006328	ENSSAUG00010006329	ENSSAUG00010006338	ENSSAUG00010006339	ENSSAUG00010006341	ENSSAUG00010006350	ENSSAUG00010006354	ENSSAUG00010006358	ENSSAUG00010006360	KBTBD13 (ENSSAUG00010000145)	ENSSAUG00010000154	UQCRFS1 (ENSSAUG00010000160)	ENSSAUG00010000169	ccnd1 (ENSSAUG00010000245) #22	ENSSAUG00010000263	fgf3 (ENSSAUG00010000266) #26	fgf4 (ENSSAUG00010000273) #25	zgc:153993 (ENSSAUG00010000281)	ENSSAUG00010000289	fgf19 (ENSSAUG00010000293) #24	ano1a (ENSSAUG00010000339) #28	ENSSAUG00010000404	CDH8 (ENSSAUG00010000448)	ENSSAUG00010000475	ENSSAUG00010000476	ENSSAUG00010000480	ENSSAUG00010000481	phospho2 (ENSSAUG00010000488)	SYAP1 (ENSSAUG00010000493)
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00530000063829.B	ENSGT00390000009077.c	ENSGT00950000182838.A.a.b	ENSGT00940000158805.a	ENSGT00940000159515.c.b	ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000154856.A.a.c.a.a	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00390000002105	ENSGT00940000157182.g.b #28
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00530000063829.B	ENSGT00390000009077.c	ENSGT00950000182838.A.a.b	ENSGT00940000158805.a	ENSGT00940000159515.c.b	ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00390000002105	ENSGT00940000157182.g.b #28	ENSGT01090000260003.a.a	ENSGT00390000000954
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00390000009077.c	ENSGT00950000182838.A.a.b	ENSGT00940000158805.a	ENSGT00940000159515.c.b	ENSGT01060000248556.A.a.a.a.b.a.b.b	ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00390000002105	ENSGT00940000157182.g.b #28	ENSGT01090000260003.a.a	ENSGT00390000000954
Climbing perch	MODERN SPECIES	16	cd81a (ENSATEG00000008899)	ENSATEG00000008921	ENSATEG00000008979	ENSATEG00000009220	ENSATEG00000009414	ENSATEG00000009540	ENSATEG00000009655	ENSATEG00000009675	spg21 (ENSATEG00000009692)	pdcd7 (ENSATEG00000009744)	UBAP1L (ENSATEG00000009767)	KBTBD13 (ENSATEG00000009774)	rasl12 (ENSATEG00000009793)	ENSATEG00000030201	ENSATEG00000009835	ENSATEG00000009890 #22	ENSATEG00000027716	fgf3 (ENSATEG00000009940) #26	ENSATEG00000009962 #25	fgf19 (ENSATEG00000009977) #24	ENSATEG00000010007	ENSATEG00000010017	ENSATEG00000010045	mtch2 (ENSATEG00000010058)	ENSATEG00000010106	ENSATEG00000010179	ENSATEG00000010238	c6ast3 (ENSATEG00000010440)	ENSATEG00000027738	ENSATEG00000010630 #28	zgc:153993 (ENSATEG00000010665)
Siamese fighting fish	MODERN SPECIES	14	si:ch211-260e23.8 (ENSBSLG00000001564)	AP2A2 (ENSBSLG00000001595)	cd81a (ENSBSLG00000001692)	PKP3 (ENSBSLG00000001716)	crata (ENSBSLG00000001815)	ANO9 (ENSBSLG00000002205)	ENSBSLG00000002354	shcbp1 (ENSBSLG00000002406)	spg21 (ENSBSLG00000002502)	pdcd7 (ENSBSLG00000002657)	UBAP1L (ENSBSLG00000002664)	KBTBD13 (ENSBSLG00000002670)	rasl12 (ENSBSLG00000002676)	uqcrfs1 (ENSBSLG00000002695)	vstm2b (ENSBSLG00000002715)	ccnd1 (ENSBSLG00000002723) #22	lto1 (ENSBSLG00000002735)	fgf3 (ENSBSLG00000002747) #26	fgf4 (ENSBSLG00000002757) #25	fgf19 (ENSBSLG00000002763) #24	ENSBSLG00000002769	ankdd1a (ENSBSLG00000002787)	mtch2 (ENSBSLG00000002875)	ENSBSLG00000002952	ENSBSLG00000002954	c6ast1 (ENSBSLG00000002960)	ENSBSLG00000002983	c6ast4 (ENSBSLG00000003592)	ENSBSLG00000003603	ano1a (ENSBSLG00000004061) #28	zgc:153993 (ENSBSLG00000004748)
Zig-zag eel	MODERN SPECIES	17	ENSMAMG00000001038	ENSMAMG00000000998	ENSMAMG00000000925	ENSMAMG00000000890	ENSMAMG00000000872	ENSMAMG00000026772	ENSMAMG00000000725	ENSMAMG00000025874	ENSMAMG00000000683	ENSMAMG00000000594	spg21 (ENSMAMG00000000536)	ENSMAMG00000000530	rasl12 (ENSMAMG00000000507)	ENSMAMG00000000480	ENSMAMG00000000464	ENSMAMG00000000428 #22	ENSMAMG00000026744	fgf3 (ENSMAMG00000020804) #26	ENSMAMG00000024357 #25	fgf19 (ENSMAMG00000020792) #24	ENSMAMG00000020784	ENSMAMG00000020768	ENSMAMG00000020760	ENSMAMG00000020754	ENSMAMG00000020749	lpin1a (ENSMAMG00000020710)	ENSMAMG00000020691	ENSMAMG00000025979	esrrga (ENSMAMG00000020673)	ENSMAMG00000025901	ENSMAMG00000020654
Carangaria	ANCESTRAL SPECIES	11						ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000154856.A.a.c.a.a.j.a	ENSGT00940000154856.A.a.c.a.a.i	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00390000002105	ENSGT00940000157182.g.b #28
Pleuronectoidei	ANCESTRAL SPECIES	70								ENSGT00940000158300.f	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000154856.A.a.c.a.a.j.a	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00390000002105	ENSGT00940000157182.g.b #28	ENSGT01090000260003.a.a	ENSGT00390000000954
Tongue sole	MODERN SPECIES	15	homer2 (ENSCSEG00000009815)	FSD2 (ENSCSEG00000009849)	ENSCSEG00000009860	pde8a (ENSCSEG00000009892)	gatm (ENSCSEG00000009953)	slc27a2a (ENSCSEG00000009981)	hdc (ENSCSEG00000010006)	USP8 (ENSCSEG00000012449)	ENSCSEG00000012481	mapk6 (ENSCSEG00000012488)	leo1 (ENSCSEG00000012502)	tmod2 (ENSCSEG00000012523)	lysmd2 (ENSCSEG00000012539)	scg3 (ENSCSEG00000012546)	vstm2b (ENSCSEG00000012557)	ccnd1 (ENSCSEG00000012564) #22	map2k5 (ENSCSEG00000012573)	SMAD3 (ENSCSEG00000012585)	SMAD6 (ENSCSEG00000012602)	tmem208 (ENSCSEG00000012613)	slc39a1 (ENSCSEG00000012617)	ENSCSEG00000012628	abhd2a (ENSCSEG00000012650)	mfge8a (ENSCSEG00000012660)	HAPLN3 (ENSCSEG00000012667)	mibp2 (ENSCSEG00000012672)	bloc1s6 (ENSCSEG00000012676)	slc30a4 (ENSCSEG00000012686)	zgc:153317 (ENSCSEG00000012700)	spata5l1 (ENSCSEG00000012712)	ENSCSEG00000012721
Turbot	MODERN SPECIES	17								ENSSMAG00000021653	ENSSMAG00000022199	spg21 (ENSSMAG00000024580)	PDCD7 (ENSSMAG00000015972)	ENSSMAG00000015977	KBTBD13 (ENSSMAG00000015983)	ENSSMAG00000032802	ENSSMAG00000015113	ENSSMAG00000015189 #22	ENSSMAG00000030695	ENSSMAG00000031096	ENSSMAG00000027260	ENSSMAG00000036745	ENSSMAG00000033586	ENSSMAG00000030671	ENSSMAG00000015204	ENSSMAG00000015234	ENSSMAG00000015263	ENSSMAG00000015291	ENSSMAG00000015945	ENSSMAG00000015894	FAH (ENSSMAG00000015867)	ENSSMAG00000015859	arnt2 (ENSSMAG00000015819)
Carangaria_A	ANCESTRAL SPECIES	66						ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000154856.A.a.c.a.a.j.a	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00390000002105	ENSGT00940000157182.g.b #28	ENSGT01090000260003.a.a
Barramundi perch	MODERN SPECIES	107	MYZAP (ENSLCAG00010000533)	polr2m (ENSLCAG00010000521)	ENSLCAG00010000516	ENSLCAG00010000507	ENSLCAG00010000495	ENSLCAG00010000461	ENSLCAG00010000430	ANO9 (ENSLCAG00010000409)	spg21 (ENSLCAG00010000371)	pdcd7 (ENSLCAG00010000335)	ENSLCAG00010000325	KBTBD13 (ENSLCAG00010000318)	rasl12 (ENSLCAG00010000309)	uqcrfs1 (ENSLCAG00010000298)	vstm2b (ENSLCAG00010000285)	ccnd1 (ENSLCAG00010000249) #22	lto1 (ENSLCAG00010000228)	ENSLCAG00010000221	fgf3 (ENSLCAG00010018537) #26	fgf4 (ENSLCAG00010018535) #25	fgf19 (ENSLCAG00010018534) #24	ENSLCAG00010018530	ankdd1a (ENSLCAG00010018517)	znf414 (ENSLCAG00010018511)	mtch2 (ENSLCAG00010018499)	ENSLCAG00010018451	ENSLCAG00010018436	ENSLCAG00010018433	SH3GLB2 (ENSLCAG00010018284)	ENSLCAG00010018259	PAM (ENSLCAG00010018248)
Seriola	ANCESTRAL SPECIES	100														ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT00530000063760.a	ENSGT00940000154170.B	ENSGT00390000006876	ENSGT00390000000020.b	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00390000002105	ENSGT00940000157182.g.b #28	ENSGT01090000260003.a.a	ENSGT00390000000954
Greater amberjack	MODERN SPECIES	1	fah (ENSSDUG00000012276)	ENSSDUG00000012301	arnt2 (ENSSDUG00000012321)	abhd17c (ENSSDUG00000012357)	CEMIP (ENSSDUG00000012379)	mesd (ENSSDUG00000012432)	TLNRD1 (ENSSDUG00000012440)	IL16 (ENSSDUG00000012459)	STARD5 (ENSSDUG00000012509)	TMC3 (ENSSDUG00000012524)	ENSSDUG00000012574	ENSSDUG00000012580	uqcrfs1 (ENSSDUG00000012585)	ENSSDUG00000012594	vstm2b (ENSSDUG00000012609)	ccnd1 (ENSSDUG00000012626) #22	lto1 (ENSSDUG00000012652)	fgf3 (ENSSDUG00000012691) #26	fgf4 (ENSSDUG00000012699) #25	fgf19 (ENSSDUG00000012705) #24	ENSSDUG00000012725	ankdd1a (ENSSDUG00000012769)	ENSSDUG00000012817	mtch2 (ENSSDUG00000012836)	ENSSDUG00000012853	ENSSDUG00000012874	ENSSDUG00000012892	ENSSDUG00000012900	c6ast3 (ENSSDUG00000012925)	ENSSDUG00000012943	ano1a (ENSSDUG00000012953) #28
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	3104												ENSSLDG00000013905	ENSSLDG00000013920	uqcrfs1 (ENSSLDG00000013932)	vstm2b (ENSSLDG00000013939)	ccnd1 (ENSSLDG00000013956) #22	lto1 (ENSSLDG00000014042)	fgf3 (ENSSLDG00000014107) #26	fgf4 (ENSSLDG00000014115) #25	fgf19 (ENSSLDG00000014126) #24	ENSSLDG00000014140	ankdd1a (ENSSLDG00000014159)	ENSSLDG00000014196	mtch2 (ENSSLDG00000014232)	ENSSLDG00000014282	ENSSLDG00000014302	ENSSLDG00000014315	ENSSLDG00000014333	ENSSLDG00000014342	ano1a (ENSSLDG00000014351) #28	zgc:153993 (ENSSLDG00000014383)
Yellowtail amberjack	MODERN SPECIES	1295																ccnd1 (ENSSLDG00000009043) #22
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00390000009077.c	ENSGT00950000182838.A.a.b	ENSGT00950000182885.A.a.e	ENSGT00940000158805.a	ENSGT00940000159515.c.b	ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000154856.A.a.c.a.a	ENSGT00940000161051.a.a.b.b.b.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00940000154170.B
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00390000009077.c	ENSGT00950000182838.A.a.b	ENSGT00950000182885.A.a.e	ENSGT00940000158805.a	ENSGT00940000159515.c.b	ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000161051.a.a.b.b.b.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000163716.c.a.a.b	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00940000154170.B	ENSGT00530000063760.a
Oryzias	ANCESTRAL SPECIES	51	ENSGT00940000155405	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000234633.A.a.a	ENSGT00950000183083.a.d.a	ENSGT00940000154258.b	ENSGT00940000153216.a.a.c.b.h	ENSGT00940000153216.a.a.c.a	ENSGT00940000159286.b	ENSGT00940000155024.a.b.d	ENSGT00940000153875.d.b	ENSGT00940000159191	ENSGT00940000159716	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00530000063760.a	ENSGT01030000234623.a.b.b	ENSGT00940000160456
Oryzias_a	ANCESTRAL SPECIES	63	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT01030000235215	ENSGT00940000155010.a	ENSGT01030000234633.A.a.a	ENSGT00950000183083.a.d.a	ENSGT00940000154258.b	ENSGT00940000153216.a.a.c.b.h	ENSGT00940000153216.a.a.c.a	ENSGT00940000157017.b	ENSGT00940000159286.b	ENSGT00940000155024.a.b.d	ENSGT00940000153875.d.b	ENSGT00940000159191	ENSGT00940000159716	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00530000063760.a	ENSGT00940000164472.a.a.b.b.a.a.b.a.a.a.a.a.c.b	ENSGT01030000234623.a.b.b	ENSGT00940000160456
Japanese Medaka HdrR	MODERN SPECIES	17	GABARAPL2 (ENSORLG00000023154)	ENSORLG00000000542	ENSORLG00000000514	ENSORLG00000029522	ENSORLG00000000398	ctrb.1 (ENSORLG00000000391)	ctrb.3 (ENSORLG00000025188)	ENSORLG00000000371	ENSORLG00000000365	ENSORLG00000027015	tppp3 (ENSORLG00000000334)	zdhhc1 (ENSORLG00000000329)	ENSORLG00000030541	hsd11b2 (ENSORLG00000000323)	ENSORLG00000025675	ccnd1 (ENSORLG00000000317) #22	lto1 (ENSORLG00000027156)	fgf3 (ENSORLG00000000302) #26	fgf4 (ENSORLG00000000295) #25	fgf19 (ENSORLG00000000289) #24	zgc:153993 (ENSORLG00000025083)	ENSORLG00000025886	ano1a (ENSORLG00000000283) #28	fadd (ENSORLG00000026453)	mc6ast2 (ENSORLG00000000239)	c6ast1 (ENSORLG00000000220)	mtch2 (ENSORLG00000000203)	ENSORLG00000000180	ENSORLG00000021935	ENSORLG00000025228	ENSORLG00000019047
Chinese medaka	MODERN SPECIES	1081														ENSOSIG00000008957	hsd11b2 (ENSOSIG00000008955)	ccnd1 (ENSOSIG00000008952) #22	lto1 (ENSOSIG00000008951)	fgf3 (ENSOSIG00000008950) #26	fgf4 (ENSOSIG00000008949) #25	fgf19 (ENSOSIG00000008948) #24	ano1a (ENSOSIG00000008946) #28
Oryzias_b	ANCESTRAL SPECIES	73														ENSGT00940000159191	ENSGT00940000159716	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000175043	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00530000063760.a	ENSGT01030000234623.a.b.b	ENSGT00940000160456
Indian medaka	MODERN SPECIES	726																ccnd1 (ENSOMEG00000012768) #22
Javanese ricefish	MODERN SPECIES	17	ENSOJAG00000000827	kmt5b (ENSOJAG00000000820)	ccnb2 (ENSOJAG00000000817)	cd82a (ENSOJAG00000000806)	pole3 (ENSOJAG00000000804)	rpl12 (ENSOJAG00000000797)	KCNG4 (ENSOJAG00000000784)	uqcrfs1 (ENSOJAG00000000773)	KBTBD13 (ENSOJAG00000000767)	ENSOJAG00000000757	PDCD7 (ENSOJAG00000000752)	zdhhc1 (ENSOJAG00000000742)	hsd11b2 (ENSOJAG00000000729)	ENSOJAG00000000705	ENSOJAG00000000696	ccnd1 (ENSOJAG00000000683) #22	lto1 (ENSOJAG00000000672)	fgf3 (ENSOJAG00000000659) #26	fgf4 (ENSOJAG00000000636) #25	fgf19 (ENSOJAG00000000629) #24	zgc:153993 (ENSOJAG00000000622)	ENSOJAG00000000618	ano1a (ENSOJAG00000000431) #28
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT00390000009077.c	ENSGT00950000182838.A.a.b	ENSGT00950000182885.A.a.e	ENSGT00940000158805.a	ENSGT00940000159515.c.b	ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00940000154170.B	ENSGT00530000063760.a	ENSGT00390000000954	ENSGT00940000159506
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00940000153289.b	ENSGT00940000162219	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000163235.A.a.a.b	ENSGT00940000177923	ENSGT00940000156076.a.b	ENSGT00960000186729	ENSGT00940000177138	ENSGT00390000013104	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00530000063760.a	ENSGT00390000000954
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00940000160363	ENSGT01050000244857.C.a.a	ENSGT00940000166109	ENSGT00940000153289.b	ENSGT00940000162219	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000163235.A.a.a.b	ENSGT00390000013104	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000154856.A.a.c.a.b.a.b.c	ENSGT00940000154856.A.a.c.a.a	ENSGT00940000161051.a.a.b.b.b.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00530000063760.a	ENSGT00390000000954
Poecilia	ANCESTRAL SPECIES	4	ENSGT00940000160363	ENSGT01050000244857.C.a.a	ENSGT00940000166109	ENSGT00940000153289.b	ENSGT00940000162219	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000163235.A.a.a.b	ENSGT00390000013104	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105
NAME_6	ANCESTRAL SPECIES	413																ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105
Amazon molly	MODERN SPECIES	517																ccnd1 (ENSPFOG00000008228) #22	ENSPFOG00000008314	lto1 (ENSPFOG00000008324)	fgf3 (ENSPFOG00000008351) #26	fgf4 (ENSPFOG00000008380) #25	fgf19 (ENSPFOG00000008420) #24	zgc:153993 (ENSPFOG00000008445)	ano1a (ENSPFOG00000008523) #28	ENSPFOG00000009086
Sailfin molly	MODERN SPECIES	3269																ccnd1 (ENSPLAG00000003371) #22
Guppy	MODERN SPECIES	455	chsy1 (ENSPREG00000002339)	selenos (ENSPREG00000002323)	snrpa1 (ENSPREG00000002296)	ENSPREG00000002265	ENSPREG00000002244	ENSPREG00000002226	tollip (ENSPREG00000002199)	spg21 (ENSPREG00000002052)	pdcd7 (ENSPREG00000002039)	UBAP1L (ENSPREG00000002034)	KBTBD13 (ENSPREG00000002029)	rasl12 (ENSPREG00000002022)	uqcrfs1 (ENSPREG00000002007)	vstm2b (ENSPREG00000001988)	ENSPREG00000001972	ccnd1 (ENSPREG00000001946) #22	ENSPREG00000001921	ENSPREG00000001902	fgf3 (ENSPREG00000001888) #26	fgf4 (ENSPREG00000001867) #25	ENSPREG00000001858	fgf19 (ENSPREG00000001830) #24	zgc:153993 (ENSPREG00000001805)	ano1a (ENSPREG00000001701) #28	ENSPREG00000001669
Platyfish	MODERN SPECIES	18	ENSXMAG00000001400	chsy1 (ENSXMAG00000001439)	selenos (ENSXMAG00000001446)	snrpa1 (ENSXMAG00000001455)	ENSXMAG00000001474	ENSXMAG00000024389	tollip (ENSXMAG00000010882)	spg21 (ENSXMAG00000011516)	pdcd7 (ENSXMAG00000021952)	UBAP1L (ENSXMAG00000023311)	KBTBD13 (ENSXMAG00000020023)	rasl12 (ENSXMAG00000028162)	uqcrfs1 (ENSXMAG00000000344)	vstm2b (ENSXMAG00000000343)	ENSXMAG00000028384	ccnd1 (ENSXMAG00000001483) #22	lto1 (ENSXMAG00000022903)	fgf3 (ENSXMAG00000001504) #26	fgf4 (ENSXMAG00000026924) #25	fgf19 (ENSXMAG00000001523) #24	zgc:153993 (ENSXMAG00000001529)	ano1a (ENSXMAG00000000754) #28	ENSXMAG00000000803	c6ast3 (ENSXMAG00000025898)	ENSXMAG00000000804	mtch2 (ENSXMAG00000029603)	ENSXMAG00000000830	ENSXMAG00000000831	ENSXMAG00000000834	BNC1 (ENSXMAG00000029406)	HDGFL3 (ENSXMAG00000013846)
NAME_4	ANCESTRAL SPECIES	286																ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c.d #25	ENSGT00940000160601 #24	ENSGT00940000178223	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00530000063760.a
Mummichog	MODERN SPECIES	566												ENSFHEG00000018064	ENSFHEG00000018054	ENSFHEG00000018041	ttc9b (ENSFHEG00000018033)	ccnd1 (ENSFHEG00000018019) #22
Sheepshead minnow	MODERN SPECIES	716				usf1l (ENSCVAG00000002726)	gkup (ENSCVAG00000002740)	ubash3bb (ENSCVAG00000002744)	hmbsa (ENSCVAG00000002754)	MINAR1 (ENSCVAG00000002757)	mthfs (ENSCVAG00000002762)	fah (ENSCVAG00000002789)	ENSCVAG00000002794	arnt2 (ENSCVAG00000002819)	mtfmt (ENSCVAG00000002829)	ENSCVAG00000002834	ENSCVAG00000002840	ccnd1 (ENSCVAG00000002852) #22	lto1 (ENSCVAG00000002858)	fgf3 (ENSCVAG00000002874) #26	fgf4 (ENSCVAG00000002880) #25
Aplocheiloidei	ANCESTRAL SPECIES	67	ENSGT00390000009077.c	ENSGT00950000182838.A.a.b	ENSGT00950000182885.A.a.e	ENSGT00940000158805.a	ENSGT00940000159515.c.b	ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b.v	ENSGT00390000006876	ENSGT00940000154170.B	ENSGT00530000063760.a	ENSGT00390000000954	ENSGT00940000159506
Turquoise killifish	MODERN SPECIES	928																CCND1 (ENSNFUG00015010645) #22	ENSNFUG00015010650
Mangrove rivulus	MODERN SPECIES	48	si:ch211-260e23.8 (ENSKMAG00000013444)	AP2A2 (ENSKMAG00000013307)	tph1b (ENSKMAG00000013199)	cd81a (ENSKMAG00000013135)	ENSKMAG00000013110	ANO9 (ENSKMAG00000013068)	ENSKMAG00000013039	shcbp1 (ENSKMAG00000013021)	spg21 (ENSKMAG00000012981)	pdcd7 (ENSKMAG00000012951)	UBAP1L (ENSKMAG00000012933)	KBTBD13 (ENSKMAG00000012922)	rasl12 (ENSKMAG00000012899)	uqcrfs1 (ENSKMAG00000012886)	vstm2b (ENSKMAG00000012875)	ccnd1 (ENSKMAG00000012851) #22	lto1 (ENSKMAG00000012842)	fgf3 (ENSKMAG00000012820) #26	fgf4 (ENSKMAG00000012803) #25	fgf19 (ENSKMAG00000012777) #24	zgc:153993 (ENSKMAG00000012745)	ano1a (ENSKMAG00000012678) #28	ENSKMAG00000012641	ENSKMAG00000012613	ENSKMAG00000012590	ENSKMAG00000012572	mtch2 (ENSKMAG00000012495)	znf414 (ENSKMAG00000012554)	ankdd1a (ENSKMAG00000012457)	ENSKMAG00000012421	ENSKMAG00000012410
Ovalentaria_B	ANCESTRAL SPECIES	40						ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a	ENSGT00940000158773
Cichlidae	ANCESTRAL SPECIES	81		ENSGT00940000158970	ENSGT00390000017828	ENSGT00390000007315	ENSGT00390000009505	ENSGT00940000158300.f	ENSGT00940000171378	ENSGT00940000166163	ENSGT00390000007857	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	28		ENSGT00940000158970	ENSGT00390000017828	ENSGT00390000001014.`b.a	ENSGT00940000160167	ENSGT00940000161629.a	ENSGT00390000008092.b.a.b	ENSGT00390000017392	ENSGT00390000007857	ENSGT00940000166163	ENSGT00940000171378	ENSGT00940000158300.f	ENSGT00390000009505	ENSGT00390000007315	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000161051.a.a.b.b.b.b	ENSGT00910000144335	ENSGT00390000000020.b	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000177923	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	32		ENSGT00940000158970	ENSGT00390000017828	ENSGT00390000001014.`b.a	ENSGT00940000160167	ENSGT00940000161629.a	ENSGT00390000008092.b.a.b	ENSGT00390000017392	ENSGT00390000007857	ENSGT00940000166163	ENSGT00940000171378	ENSGT00940000158300.f	ENSGT00390000009505	ENSGT00390000007315	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000161051.a.a.b.b.b.b	ENSGT00910000144335	ENSGT00390000000020.b	ENSGT00390000013104	ENSGT00940000177138	ENSGT00940000156076.a.b	ENSGT00940000177923	ENSGT00940000163235.A.a.a.b
Haplochromini	ANCESTRAL SPECIES	34																ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT00910000144335	ENSGT00390000000020.b	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000163235.E.k.a
Haplochromini_A	ANCESTRAL SPECIES	39																ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT00910000144335	ENSGT00390000000020.b	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000162219	ENSGT00940000163235.E.k.a	ENSGT00940000164871.a.a.f.b
P. nyererei	MODERN SPECIES	737															ENSPNYG00000014212	ccnd1 (ENSPNYG00000014226) #22	lto1 (ENSPNYG00000014248)	fgf3 (ENSPNYG00000014283) #26	fgf4 (ENSPNYG00000014295) #25
Haplochromini_B	ANCESTRAL SPECIES	77																ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT00910000144335	ENSGT00390000000020.b	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000162219	ENSGT00940000163235.E.k.a	ENSGT00940000164871.a.a.f.b
Zebra mbuna	MODERN SPECIES	1091															ENSMZEG00005017236	ccnd1 (ENSMZEG00005017230) #22	lto1 (ENSMZEG00005017226)	fgf3 (ENSMZEG00005017222) #26	fgf4 (ENSMZEG00005017215) #25	fgf19 (ENSMZEG00005017208) #24	zgc:153993 (ENSMZEG00005017204)	abhd17c (ENSMZEG00005017197)	ENSMZEG00005017192	CEMIP (ENSMZEG00005017171)	mesd (ENSMZEG00005017158)	ENSMZEG00005017154	ENSMZEG00005017139	ankdd1a (ENSMZEG00005017129)	tipin (ENSMZEG00005017116)	dis3l (ENSMZEG00005017095)	ENSMZEG00005017084
Burton s mouthbrooder	MODERN SPECIES	1002																ccnd1 (ENSHBUG00000013349) #22	lto1 (ENSHBUG00000013354)	fgf3 (ENSHBUG00000013382) #26	fgf4 (ENSHBUG00000013392) #25	fgf19 (ENSHBUG00000013402) #24	zgc:153993 (ENSHBUG00000000400)
Lyretail cichlid	MODERN SPECIES	407					celf1 (ENSNBRG00000023547)	mtfmt (ENSNBRG00000023561)	uqcrfs1 (ENSNBRG00000023569)	rasl12 (ENSNBRG00000023571)	pdcd7 (ENSNBRG00000023576)	spg21 (ENSNBRG00000023584)	shcbp1 (ENSNBRG00000023595)	ENSNBRG00000000260	ENSNBRG00000000272	zgc:92818 (ENSNBRG00000000317)	vps35 (ENSNBRG00000000335)	ccnd1 (ENSNBRG00000000434) #22	lto1 (ENSNBRG00000000461)	fgf4 (ENSNBRG00000000469) #25	ENSNBRG00000000482	fgf19 (ENSNBRG00000000502) #24	zgc:153993 (ENSNBRG00000000510)	ano1a (ENSNBRG00000000549) #28	ENSNBRG00000000579	ENSNBRG00000000603	TLNRD1 (ENSNBRG00000000863)	TLNRD1 (ENSNBRG00000000871)	mtch2 (ENSNBRG00000000875)	tollip (ENSNBRG00000000912)	ENSNBRG00000000965	ENSNBRG00000000983	ENSNBRG00000001011
Nile tilapia	MODERN SPECIES		ENSONIG00000034634	ENSONIG00000028995	LRRK1 (ENSONIG00000005479)	spg21 (ENSONIG00000005401)	shcbp1 (ENSONIG00000005403)	ENSONIG00000039376	ENSONIG00000028794	ANO9 (ENSONIG00000005410)	ENSONIG00000041258	vps35 (ENSONIG00000005417)	vstm2b (ENSONIG00000005423)	ENSONIG00000035277	ENSONIG00000032417	ENSONIG00000042913	ENSONIG00000039148	ccnd1 (ENSONIG00000041456) #22	fgf19 (ENSONIG00000018094) #24	zgc:153993 (ENSONIG00000018095)	ENSONIG00000032473	ano1a (ENSONIG00000018097) #28	ENSONIG00000018107	ENSONIG00000018108	ENSONIG00000033332	ENSONIG00000042289	ENSONIG00000033358	TLNRD1 (ENSONIG00000007320)	mtch2 (ENSONIG00000007321)	ENSONIG00000038545	tollip (ENSONIG00000008316)	ENSONIG00000008311	ENSONIG00000028129
Midas cichlid	MODERN SPECIES	844	HERC1 (ENSACIG00000002866)	tspan18a (ENSACIG00000002818)	cd82a (ENSACIG00000002769)	ccnb2 (ENSACIG00000002751)	kmt5b (ENSACIG00000002725)	pole3 (ENSACIG00000002711)	lctla (ENSACIG00000002686)	crybgx (ENSACIG00000002669)	cars1 (ENSACIG00000002614)	ENSACIG00000002605	pdcd7 (ENSACIG00000002556)	KBTBD13 (ENSACIG00000002547)	rasl12 (ENSACIG00000002516)	uqcrfs1 (ENSACIG00000002502)	vstm2b (ENSACIG00000002484)	ccnd1 (ENSACIG00000002470) #22	lto1 (ENSACIG00000002375)	fgf3 (ENSACIG00000002356) #26	fgf4 (ENSACIG00000002347) #25	fgf19 (ENSACIG00000002315) #24	zgc:153993 (ENSACIG00000002303)	ENSACIG00000002295 #28	ano1a (ENSACIG00000002259) #28	ENSACIG00000002213	ENSACIG00000002082	npsn (ENSACIG00000001963)	ankdd1a (ENSACIG00000001912)	ENSACIG00000001890	znf414 (ENSACIG00000001875)	mesd (ENSACIG00000001865)	ENSACIG00000001855
Pomacentridae	ANCESTRAL SPECIES	73	ENSGT00940000157540.B	ENSGT01080000257410.A.f.l	ENSGT00940000161051.a.b	ENSGT01050000244841.A.a.b.qb.a.b	ENSGT00390000009312.b	ENSGT00550000074815	ENSGT00390000002211	ENSGT00940000154928.c.a.a	ENSGT00940000155500.e	ENSGT00950000182838.A.a.b	ENSGT00940000158805.a	ENSGT00940000158970	ENSGT00390000017828	ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT00940000154170.B	ENSGT00530000063760.a	ENSGT00390000000954	ENSGT00940000159506	ENSGT00940000160728.i	ENSGT00390000010067	ENSGT00940000159763 #20
Bicolor damselfish	MODERN SPECIES	496															ENSSPAG00000021923	ccnd1 (ENSSPAG00000021914) #22	lto1 (ENSSPAG00000021908)	fgf3 (ENSSPAG00000021858) #26	fgf4 (ENSSPAG00000021837) #25	fgf19 (ENSSPAG00000021813) #24	zgc:153993 (ENSSPAG00000021806)	ano1a (ENSSPAG00000021759) #28	ENSSPAG00000021743	ENSSPAG00000021716	chsy1 (ENSSPAG00000021708)	LRRK1 (ENSSPAG00000021589)	aldh1a3 (ENSSPAG00000021537)
Pomacentridae_A	ANCESTRAL SPECIES	160														ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b.e.b #28	ENSGT00940000157182.g.b.e.a #28	ENSGT00940000154170.B	ENSGT00530000063760.a	ENSGT00390000000954	ENSGT00940000159506	ENSGT00390000010067	ENSGT00940000159763 #20	ENSGT00390000010152 #34	ENSGT00940000160143
Spiny chromis	MODERN SPECIES	1449																ccnd1 (ENSAPOG00000009851) #22	lto1 (ENSAPOG00000009808)
Amphiprion	ANCESTRAL SPECIES	184														ENSGT00390000001014.`b.a	ENSGT00940000161356	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000161128 #26	ENSGT00940000158825.c #25	ENSGT00940000160601 #24	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b.e.b #28	ENSGT00940000157182.g.b.e.a #28	ENSGT00940000154170.B	ENSGT00530000063760.a	ENSGT00390000000954	ENSGT00940000159506	ENSGT00390000010067	ENSGT00940000159763 #20	ENSGT00390000010152 #34	ENSGT00940000160143
Clown anemonefish	MODERN SPECIES	1556																ccnd1 (ENSAOCG00000021460) #22	lto1 (ENSAOCG00000021444)	fgf3 (ENSAOCG00000021433) #26	fgf4 (ENSAOCG00000021414) #25	fgf19 (ENSAOCG00000021393) #24	zgc:153993 (ENSAOCG00000001562)	ENSAOCG00000021364 #28	ENSAOCG00000021326	ano1a (ENSAOCG00000021309) #28	ankdd1a (ENSAOCG00000021241)	ENSAOCG00000001553	ENSAOCG00000021175	PCSK6 (ENSAOCG00000021158)
Orange clownfish	MODERN SPECIES		ENSAPEG00000001175	GLO1 (ENSAPEG00000001600)	eprs1 (ENSAPEG00000001630)	TDP1 (ENSAPEG00000001761)	hmbox1a (ENSAPEG00000001785)	KIF13B (ENSAPEG00000001860)	AP2A2 (ENSAPEG00000002233)	cd81a (ENSAPEG00000002323)	celf1 (ENSAPEG00000002340)	mtfmt (ENSAPEG00000002360)	uqcrfs1 (ENSAPEG00000002367)	ENSAPEG00000002392	vstm2b (ENSAPEG00000002407)	ENSAPEG00000002418	ENSAPEG00000002421	ccnd1 (ENSAPEG00000002429) #22	lto1 (ENSAPEG00000002443)	fgf3 (ENSAPEG00000002492) #26	fgf4 (ENSAPEG00000002516) #25	fgf19 (ENSAPEG00000002532) #24	zgc:153993 (ENSAPEG00000002543)	ano1a (ENSAPEG00000002549) #28	ano1a (ENSAPEG00000002576) #28	ankdd1a (ENSAPEG00000002592)	ENSAPEG00000002658	ENSAPEG00000002669	PCSK6 (ENSAPEG00000002680)	ENSAPEG00000002768	ENSAPEG00000002793	ENSAPEG00000002811	pop4 (ENSAPEG00000002829)
Otomorpha	ANCESTRAL SPECIES	182										ENSGT00940000166567	ENSGT00940000154285.b.a.b	ENSGT00940000156939.e	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825.c #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00950000182973.b.a	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c
Otophysi	ANCESTRAL SPECIES	4	ENSGT00940000159184	ENSGT00390000013048	ENSGT00950000182913.A.b.b	ENSGT00950000182913.A.b.a	ENSGT00940000164905	ENSGT00940000154666	ENSGT00940000156956	ENSGT00940000153678.a.b	ENSGT00390000006485.d	ENSGT00940000166567	ENSGT00940000154285.b.a.b	ENSGT00940000156939.e	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825.c #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00950000182973.b.a	ENSGT00940000156476.g.i	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00940000159184	ENSGT00390000013048	ENSGT00950000182913.A.b.b	ENSGT00950000182913.A.b.a	ENSGT00940000164905.g	ENSGT00940000154666	ENSGT00940000156956	ENSGT00940000153678.a.b	ENSGT00390000006485.d	ENSGT00940000166567	ENSGT00940000154285.b.a.b	ENSGT00940000156939.e	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825.c #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00950000182973.b.a	ENSGT00940000156476.g.i	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c
Channel catfish	MODERN SPECIES	1	bco1l (ENSIPUG00000020470)	ENSIPUG00000020353	ipo7 (ENSIPUG00000020136)	tmem41b (ENSIPUG00000020102)	dennd5a (ENSIPUG00000019992)	sinhcafl (ENSIPUG00000019971)	ENSIPUG00000019962	ENSIPUG00000019949	ENSIPUG00000019940	ENSIPUG00000019843	Mmp15 (ENSIPUG00000019812)	dhcr7 (ENSIPUG00000019766) #33	NADSYN1 (ENSIPUG00000019689) #34	tpcn2 (ENSIPUG00000019633) #20	ENSIPUG00000014590	ccnd1 (ENSIPUG00000014564) #22	oraov1 (ENSIPUG00000014549)	fgf19 (ENSIPUG00000014545) #24	fgf4 (ENSIPUG00000014536) #25	fgf3 (ENSIPUG00000014520) #26	zgc:153993 (ENSIPUG00000014498)	ano1a (ENSIPUG00000014429) #28	fadd (ENSIPUG00000014390)	pacsin3 (ENSIPUG00000014353)	csnk1g1 (ENSIPUG00000014243)	ENSIPUG00000014229	neo1a (ENSIPUG00000013896)	scamp2l (ENSIPUG00000013855)	myo9a (ENSIPUG00000013394)	senp8 (ENSIPUG00000013338)	GRAMD2A (ENSIPUG00000013322)
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00940000159184	ENSGT00390000013048	ENSGT00950000182913.A.b.b	ENSGT00950000182913.A.b.a	ENSGT00940000164905.g	ENSGT00940000154666	ENSGT00940000156956	ENSGT00940000153678.a.b	ENSGT00390000006485.d	ENSGT00940000166567	ENSGT00940000154285.b.a.b	ENSGT00940000156939.e	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825.c #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00950000182973.b.a	ENSGT00390000006548.b	ENSGT00940000156476.g.i	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300
Characoidei	ANCESTRAL SPECIES	18												ENSGT00940000156939.e	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825.c #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00950000182973.b.a	ENSGT00390000006548.b	ENSGT00940000156476.g.i	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300
Red-bellied piranha	MODERN SPECIES	161							ENSPNAG00000022356	ENSPNAG00000022339	ENSPNAG00000022293	ENSPNAG00000022279	ENSPNAG00000022261	MMP15 (ENSPNAG00000022228)	dhcr7 (ENSPNAG00000022163) #33	nadsyn1 (ENSPNAG00000022104) #34	tpcn2 (ENSPNAG00000022015) #20	ccnd1 (ENSPNAG00000006903) #22	lto1 (ENSPNAG00000021864)	fgf19 (ENSPNAG00000021853) #24	fgf4 (ENSPNAG00000021832) #25	fgf3 (ENSPNAG00000021821) #26	zgc:153993 (ENSPNAG00000021787)	ENSPNAG00000021755 #28	ENSPNAG00000021722 #28	csnk1g1 (ENSPNAG00000021696)	ENSPNAG00000021585	neo1a (ENSPNAG00000003684)	scamp2l (ENSPNAG00000021222)	myo9aa (ENSPNAG00000021097)	senp8 (ENSPNAG00000020966)	GRAMD2A (ENSPNAG00000020942)	znf609b (ENSPNAG00000020905)
Mexicana tetra	MODERN SPECIES	20	ctr9 (ENSAMXG00000010162)	eif4g2a (ENSAMXG00000010137)	GALNT18 (ENSAMXG00000010122)	ENSAMXG00000035537	ENSAMXG00000038078	BTBD10 (ENSAMXG00000010107)	bmal1b (ENSAMXG00000010089)	RASSF10 (ENSAMXG00000010083)	TEAD1 (ENSAMXG00000010081)	parvab (ENSAMXG00000032418)	MICAL2 (ENSAMXG00000010053)	dkk3a (ENSAMXG00000035905)	usp47 (ENSAMXG00000010037)	CLEC3A (ENSAMXG00000038136)	vat1l (ENSAMXG00000041688)	ccnd1 (ENSAMXG00000043726) #22	lto1 (ENSAMXG00000034636)	fgf19 (ENSAMXG00000009704) #24	fgf4 (ENSAMXG00000036274) #25	fgf3 (ENSAMXG00000029164) #26	zgc:153993 (ENSAMXG00000007399)	ano1a (ENSAMXG00000031586) #28	FADD (ENSAMXG00000007390)	ENSAMXG00000007383	pacsin3 (ENSAMXG00000037379)	csnk1g1 (ENSAMXG00000007375)	ENSAMXG00000007371	ENSAMXG00000037315	neo1a (ENSAMXG00000007328)	scamp2l (ENSAMXG00000034251)	myo9aa (ENSAMXG00000007289)
Electric eel	MODERN SPECIES	9	CLEC3A (ENSEEEG00000016692)	vat1l (ENSEEEG00000016693)	bola3 (ENSEEEG00000016696)	bco1 (ENSEEEG00000016701)	bco1l (ENSEEEG00000016734)	ENSEEEG00000016736	ipo7 (ENSEEEG00000016768)	tmem41b (ENSEEEG00000017445)	DENND5A (ENSEEEG00000017492)	sinhcafl (ENSEEEG00000017992)	ENSEEEG00000017995	MMP15 (ENSEEEG00000017998)	dhcr7 (ENSEEEG00000017999) #33	nadsyn1 (ENSEEEG00000018007) #34	tpcn2 (ENSEEEG00000018286) #20	ccnd1 (ENSEEEG00000018287) #22	lto1 (ENSEEEG00000018288)	fgf19 (ENSEEEG00000018290) #24	fgf4 (ENSEEEG00000018293) #25	fgf3 (ENSEEEG00000018294) #26	zgc:153993 (ENSEEEG00000018296)	ano1a (ENSEEEG00000018297) #28	FADD (ENSEEEG00000018298)	pacsin3 (ENSEEEG00000018299)	csnk1g1 (ENSEEEG00000018313)	ENSEEEG00000018367	ENSEEEG00000018375	neo1a (ENSEEEG00000018379)	scamp2l (ENSEEEG00000018382)	myo9aa (ENSEEEG00000018383)	senp8 (ENSEEEG00000018384)
Cyprinoidei	ANCESTRAL SPECIES	41	ENSGT00940000159184	ENSGT00390000013048	ENSGT00950000182913.A.b.b	ENSGT00950000182913.A.b.a	ENSGT00940000164905.e.a	ENSGT00940000154666	ENSGT00940000156956	ENSGT00940000153678.a.b	ENSGT00390000006485.d	ENSGT00940000166567	ENSGT00940000154285.b.a.b.c	ENSGT00940000156939.e	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825.c #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00950000182973.b.a	ENSGT00940000155628	ENSGT00390000006548.a.a	ENSGT00940000156684.t	ENSGT00940000154617.B.c	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	305	ENSGT00940000157223	ENSGT00950000183186.B.a	ENSGT00940000159184.c	ENSGT00390000013048.u.b	ENSGT00950000182913.A.b.b.b	ENSGT00950000182913.A.b.a.e	ENSGT00940000154666.v	ENSGT00940000156956.k	ENSGT00940000153678.a.b.c	ENSGT00390000006485.d.j	ENSGT00940000166567.k.a	ENSGT00940000156939.e.a	ENSGT00390000000417.a.b.j #33	ENSGT00390000010152.h #34	ENSGT00940000159763.d #20	ENSGT00940000157816.a.b.i #22	ENSGT00940000166897	ENSGT00940000160601.n #24	ENSGT00940000158825.c.h #25	ENSGT00940000161128.i #26	ENSGT01090000260003.a.a.f	ENSGT00940000157182.g.b.t #28	ENSGT00390000002105.b	ENSGT00950000182973.b.a.f	ENSGT00940000155628.r	ENSGT00940000156684.t.a	ENSGT00940000154617.B.c.b	ENSGT00940000159572.a.a.a	ENSGT00390000008748.b.g.b.b	ENSGT00390000005300.d.b
Goldfish	MODERN SPECIES	47	usp47 (ENSCARG00000063051)	CLEC3A (ENSCARG00000065246)	vat1l (ENSCARG00000065255)	bola3 (ENSCARG00000065276)	bco1 (ENSCARG00000065291)	bco1l (ENSCARG00000065320)	ipo7 (ENSCARG00000065426)	tmem41b (ENSCARG00000065632)	DENND5A (ENSCARG00000065853)	sinhcafl (ENSCARG00000068201)	ENSCARG00000068238	MMP15 (ENSCARG00000068317)	dhcr7 (ENSCARG00000068365) #33	nadsyn1 (ENSCARG00000068389) #34	tpcn2 (ENSCARG00000068478) #20	ccnd1 (ENSCARG00000068731) #22	lto1 (ENSCARG00000068739)	fgf19 (ENSCARG00000068743) #24	fgf4 (ENSCARG00000068748) #25	fgf3 (ENSCARG00000068754) #26	zgc:153993 (ENSCARG00000068761)	ano1a (ENSCARG00000068786) #28	FADD (ENSCARG00000068856)	pacsin3 (ENSCARG00000068872)	csnk1g1 (ENSCARG00000068939)	ENSCARG00000069020	rps17 (ENSCARG00000069033)	neo1a (ENSCARG00000069337)	chrna7a (ENSCARG00000069888)	ENSCARG00000069892	ENSCARG00000069893
Cyprininae_a	ANCESTRAL SPECIES	94	ENSGT00940000157223.b	ENSGT00950000183186.B.a	ENSGT00940000159184.c	ENSGT00950000182913.A.b.b.b	ENSGT00950000182913.A.b.a.e	ENSGT00940000154666.v	ENSGT00940000156956.k.a	ENSGT00940000153678.a.b.c	ENSGT00390000006485.d.j	ENSGT00940000166567.k.a	ENSGT00940000154285.b.a.b.c.b	ENSGT00940000156939.e.a	ENSGT00390000000417.a.b.j #33	ENSGT00390000010152.h #34	ENSGT00940000159763.d #20	ENSGT00940000157816.a.b.i #22	ENSGT00940000166897.a	ENSGT00940000160601.n #24	ENSGT00940000158825.c.h #25	ENSGT00940000161128.i #26	ENSGT01090000260003.a.a.f	ENSGT00940000157182.g.b.t #28	ENSGT00390000002105.b	ENSGT00950000182973.b.a.f	ENSGT00940000155628.r	ENSGT00940000156684.t.a	ENSGT00940000154617.B.c.b	ENSGT00940000159572.a.a.a	ENSGT00390000008748.b.g.b.b	ENSGT00390000005300.d.b	ENSGT00940000159408.o.b.b
Common carp reference	MODERN SPECIES		dkk3a (ENSCCRG00000061308)	usp47 (ENSCCRG00000020193)	vat1l (ENSCCRG00000080998)	bco1 (ENSCCRG00000003349)	bco1l (ENSCCRG00000063942)	ipo7 (ENSCCRG00000011437)	tmem41b (ENSCCRG00000053584)	DENND5A (ENSCCRG00000043286)	sinhcafl (ENSCCRG00000070183)	ENSCCRG00000043085	ENSCCRG00000036225	ENSCCRG00000081502	dhcr7 (ENSCCRG00000068782) #33	nadsyn1 (ENSCCRG00000061042) #34	tpcn2 (ENSCCRG00000026408) #20	CCND1 (ENSCCRG00000053902) #22	lto1 (ENSCCRG00000056961)	fgf19 (ENSCCRG00000061363) #24	fgf4 (ENSCCRG00000030330) #25	fgf3 (ENSCCRG00000078069) #26	zgc:153993 (ENSCCRG00000080344)	ano1a (ENSCCRG00000053149) #28	pacsin3 (ENSCCRG00000009284)	csnk1g1 (ENSCCRG00000080486)	neo1a (ENSCCRG00000010056)	ENSCCRG00000034969	chrna7a (ENSCCRG00000060541)	ENSCCRG00000070394	trip4 (ENSCCRG00000050826)	ENSCCRG00000029786	ENSCCRG00000022537
Golden-line barbel	MODERN SPECIES	61	MICAL2 (ENSSGRG00000015385)	dkk3a (ENSSGRG00000015386)	usp47 (ENSSGRG00000015388)	CLEC3A (ENSSGRG00000015512)	vat1l (ENSSGRG00000015514)	bco1 (ENSSGRG00000015516)	bco1l (ENSSGRG00000015524)	ipo7 (ENSSGRG00000015566)	tmem41b (ENSSGRG00000015657)	DENND5A (ENSSGRG00000015660)	sinhcafl (ENSSGRG00000015782)	MMP15 (ENSSGRG00000015795)	dhcr7 (ENSSGRG00000016611) #33	nadsyn1 (ENSSGRG00000016645) #34	tpcn2 (ENSSGRG00000016652) #20	ccnd1 (ENSSGRG00000016653) #22	ENSSGRG00000016672	fgf19 (ENSSGRG00000016673) #24	fgf4 (ENSSGRG00000016674) #25	fgf3 (ENSSGRG00000016675) #26	ENSSGRG00000016676	SLC2A13 (ENSSGRG00000016677)	ENSSGRG00000016678	ENSSGRG00000016679	slco1d1 (ENSSGRG00000016692)	ENSSGRG00000017122	ENSSGRG00000017127	IAPP (ENSSGRG00000017128)	pyroxd1 (ENSSGRG00000017130)	PARP11 (ENSSGRG00000017319)	ENSSGRG00000017320
Cyprininae	ANCESTRAL SPECIES	254	ENSGT00390000013048.u.a	ENSGT00950000182913.A.b.b.a	ENSGT00950000182913.A.b.a.f	ENSGT00940000164905.e.a	ENSGT00940000154666.u	ENSGT00940000156956.l	ENSGT00940000153678.a.b.d	ENSGT00390000006485.d.i	ENSGT00940000166567.l	ENSGT00940000154285.b.a.b.c	ENSGT00940000166567.k.b	ENSGT00940000156939.e.b	ENSGT00390000000417.a.b.i #33	ENSGT00390000010152.g.b #34	ENSGT00940000159763.c #20	ENSGT00940000157816.a.b.j #22	ENSGT00940000160601.m #24	ENSGT00940000158825.c.g #25	ENSGT00940000161128.j #26	ENSGT01090000260003.a.a.e	ENSGT00940000157182.g.b.s #28	ENSGT00390000002105.a	ENSGT00950000182973.b.a.e	ENSGT00940000155628.q	ENSGT00390000006548.a.a	ENSGT00940000156684.t.b	ENSGT00940000154617.B.c.a	ENSGT00940000159572.a.a.b	ENSGT00390000008748.b.g.b.a	ENSGT00390000005300.d.a	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.a.a.a.a.a
Goldfish	MODERN SPECIES	25	ENSCARG00000008294	usp47 (ENSCARG00000008428)	vat1l (ENSCARG00000010717)	bola3 (ENSCARG00000010740)	ipo7 (ENSCARG00000010932)	bco1 (ENSCARG00000014207)	ENSCARG00000014263	tmem41b (ENSCARG00000014300)	DENND5A (ENSCARG00000014366)	sinhcafl (ENSCARG00000015973)	ENSCARG00000015984	MMP15 (ENSCARG00000016014)	dhcr7 (ENSCARG00000016168) #33	nadsyn1 (ENSCARG00000016229) #34	tpcn2 (ENSCARG00000016284) #20	ccnd1 (ENSCARG00000016361) #22	ENSCARG00000016373	fgf3 (ENSCARG00000016384) #26	fgf4 (ENSCARG00000016389) #25	zgc:153993 (ENSCARG00000016399)	ano1a (ENSCARG00000016419) #28	ENSCARG00000016562	pacsin3 (ENSCARG00000016585)	csnk1g1 (ENSCARG00000016635)	rps17 (ENSCARG00000016679)	neo1a (ENSCARG00000017084)	chrna7a (ENSCARG00000029091)	ENSCARG00000029212	znf609b (ENSCARG00000029233)	trip4 (ENSCARG00000029273)	ENSCARG00000029624
Cyprininae_a	ANCESTRAL SPECIES	110	ENSGT00940000159184.d	ENSGT00390000013048.u.a	ENSGT00950000182913.A.b.b.a	ENSGT00950000182913.A.b.a.f	ENSGT00940000164905.e.a	ENSGT00940000154666.u	ENSGT00940000156956.k.b	ENSGT00940000153678.a.b.d	ENSGT00390000006485.d.i	ENSGT00940000166567.l	ENSGT00940000154285.b.a.b.c.a	ENSGT00940000156939.e.b	ENSGT00390000000417.a.b.i #33	ENSGT00390000010152.g.b #34	ENSGT00940000159763.c #20	ENSGT00940000157816.a.b.j #22	ENSGT00940000166897.b	ENSGT00940000160601.m #24	ENSGT00940000158825.c.g #25	ENSGT00940000161128.j #26	ENSGT01090000260003.a.a.e	ENSGT00940000157182.g.b.s #28	ENSGT00390000002105.a	ENSGT00950000182973.b.a.e	ENSGT00940000155628.q	ENSGT00390000006548.a.a	ENSGT00940000156684.t.b	ENSGT00940000154617.B.c.a	ENSGT00940000159572.a.a.b	ENSGT00390000008748.b.g.b.a	ENSGT00390000005300.d.a
Common carp reference	MODERN SPECIES	6	usp47 (ENSCCRG00000014365)	vat1l (ENSCCRG00000027568)	bola3 (ENSCCRG00000002888)	bco1 (ENSCCRG00000027496)	bco1l (ENSCCRG00000013748)	ENSCCRG00000013741	ipo7 (ENSCCRG00000013081)	tmem41b (ENSCCRG00000071144)	DENND5A (ENSCCRG00000043145)	sinhcafl (ENSCCRG00000062499)	ENSCCRG00000057903	ENSCCRG00000043061	dhcr7 (ENSCCRG00000057526) #33	nadsyn1 (ENSCCRG00000002307) #34	tpcn2 (ENSCCRG00000045490) #20	ccnd1 (ENSCCRG00000007012) #22	lto1 (ENSCCRG00000065219)	fgf19 (ENSCCRG00000004531) #24	fgf4 (ENSCCRG00000067051) #25	fgf3 (ENSCCRG00000004557) #26	zgc:153993 (ENSCCRG00000046765)	ano1a (ENSCCRG00000020360) #28	FADD (ENSCCRG00000072094)	pacsin3 (ENSCCRG00000021727)	csnk1g1 (ENSCCRG00000033888)	ENSCCRG00000012636	rps17 (ENSCCRG00000074570)	neo1a (ENSCCRG00000028503)	chrna7a (ENSCCRG00000016316)	ENSCCRG00000056860	znf609b (ENSCCRG00000006411)
Golden-line barbel	MODERN SPECIES	183													dhcr7 (ENSSGRG00000008624) #33	nadsyn1 (ENSSGRG00000008625) #34	tpcn2 (ENSSGRG00000008655) #20	ccnd1 (ENSSGRG00000008656) #22	lto1 (ENSSGRG00000008670)	fgf19 (ENSSGRG00000008671) #24	fgf4 (ENSSGRG00000008673) #25	fgf4 (ENSSGRG00000008674) #25	fgf3 (ENSSGRG00000008676) #26	zgc:153993 (ENSSGRG00000008677)	ano1a (ENSSGRG00000008684) #28	pacsin3 (ENSSGRG00000009241)	csnk1g1 (ENSSGRG00000009631)	rps17 (ENSSGRG00000010006)	neo1a (ENSSGRG00000010040)	chrna7a (ENSSGRG00000012746)	ENSSGRG00000012747	znf609b (ENSSGRG00000012748)	trip4 (ENSSGRG00000012752)
Zebrafish	MODERN SPECIES	22	SPG7 (ENSDARG00000068187)	cdh15 (ENSDARG00000068191)	ACSF3 (ENSDARG00000059503)	CBFA2T3 (ENSDARG00000079012)	pabpn1l (ENSDARG00000087996)	trappc2l (ENSDARG00000111785)	galns (ENSDARG00000051853)	aprt (ENSDARG00000003519)	CDT1 (ENSDARG00000051854)	PIEZO1 (ENSDARG00000076870)	ctu2 (ENSDARG00000051851)	RNF166 (ENSDARG00000089538)	ENSDARG00000035796	snai3 (ENSDARG00000031243)	tpcn2 (ENSDARG00000100420) #20	ccnd1 (ENSDARG00000101637) #22	lto1 (ENSDARG00000104287)	fgf19 (ENSDARG00000098663) #24	fgf4 (ENSDARG00000105230) #25	fgf3 (ENSDARG00000101540) #26	zgc:153993 (ENSDARG00000099722)	ano1a (ENSDARG00000102335) #28	FADD (ENSDARG00000103021)	pacsin3 (ENSDARG00000099339)	csnk1g1 (ENSDARG00000104342)	rps17 (ENSDARG00000104011)	neo1a (ENSDARG00000102855)	chrna7a (ENSDARG00000101702)	ENSDARG00000103736	znf609b (ENSDARG00000104530)	trip4 (ENSDARG00000098074)
Clupeiformes	ANCESTRAL SPECIES	369												ENSGT00940000156939.e	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816.a.b #22	ENSGT00940000166897	ENSGT00940000160601 #24	ENSGT00940000158825.c #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00950000182973.b.a
Denticle herring	MODERN SPECIES	7	ENSDCDG00000028818	tcf25 (ENSDCDG00000028876)	mc1r (ENSDCDG00000030288)	bola3 (ENSDCDG00000030293)	pdcd5 (ENSDCDG00000030300)	mvda (ENSDCDG00000030310)	cyba (ENSDCDG00000030323)	ENSDCDG00000030324	DENND5A (ENSDCDG00000030342)	tmem41b (ENSDCDG00000030491)	ipo7 (ENSDCDG00000030506)	ENSDCDG00000031868	nadsyn1 (ENSDCDG00000031887) #34	tpcn2 (ENSDCDG00000031902) #20	ENSDCDG00000022293	ccnd1 (ENSDCDG00000022299) #22	ENSDCDG00000022301	lto1 (ENSDCDG00000022303)	fgf19 (ENSDCDG00000022305) #24	fgf4 (ENSDCDG00000022308) #25	fgf3 (ENSDCDG00000022315) #26	zgc:153993 (ENSDCDG00000022398)	ano1a (ENSDCDG00000022511) #28	FADD (ENSDCDG00000026252)	pacsin3 (ENSDCDG00000026254)	ACSF3 (ENSDCDG00000026303)	CBFA2T3 (ENSDCDG00000026480)	PABPN1L (ENSDCDG00000026482)	trappc2l (ENSDCDG00000026484)	galns (ENSDCDG00000026497)	tnni2b.2 (ENSDCDG00000026548)
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000157816.b #22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000157816.b #22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000157816.b #22
Clupeocephala	ANCESTRAL SPECIES	68	ENSGT00490000043434	ENSGT00530000063023.A.a	ENSGT00940000164020.c	ENSGT00950000183156.b	ENSGT00940000160143	ENSGT00730000110960.b	ENSGT00940000154285.b.a.a.b	ENSGT00940000158295	ENSGT00390000015672	ENSGT00940000166567	ENSGT00940000154285.b.a.b	ENSGT00940000156939.e	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816.b #22	ENSGT00990000205605	ENSGT00940000160601 #24	ENSGT00940000158825.c #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105
Euteleosteomorpha	ANCESTRAL SPECIES	3	ENSGT00530000063023.A.a	ENSGT00940000164020.c	ENSGT00950000183156.b	ENSGT00940000160143	ENSGT00730000110960.b	ENSGT00970000197355	ENSGT00940000158295	ENSGT00390000015672	ENSGT00940000166567	ENSGT00940000154285.b.a.b	ENSGT00940000154285.b.a.a.b	ENSGT00940000156939.e	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816.b #22	ENSGT00940000160601 #24	ENSGT00940000158825.c #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT00940000154856.A.a.c.a.a	ENSGT00940000154856.A.a.c.a.b.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b	ENSGT01020000230346.E	ENSGT01050000244888.b.b.a.a	ENSGT00730000111696.a	ENSGT00940000153571.b
Protacanthopterygii	ANCESTRAL SPECIES	2	ENSGT00950000183156.b	ENSGT00940000160143	ENSGT00730000110960.b	ENSGT00940000154285.b.a.a.b	ENSGT00970000198111	ENSGT00390000005651.n	ENSGT00940000156113	ENSGT00940000158295	ENSGT00390000015672	ENSGT00940000166567	ENSGT00940000154285.b.a.b	ENSGT00940000156939.e	ENSGT00390000000417.a.b #33	ENSGT00390000010152 #34	ENSGT00940000159763 #20	ENSGT00940000157816.b #22	ENSGT00940000160601 #24	ENSGT00940000158825.c #25	ENSGT00940000161128 #26	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b #28	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT00940000154856.A.a.c.a.a	ENSGT00940000154856.A.a.c.a.b.a.b	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00390000000020.b	ENSGT01020000230346.E	ENSGT01050000244888.b.b.a.a	ENSGT00730000111696.a	ENSGT00940000153571.b
Northern pike	MODERN SPECIES	18	CALD1 (ENSELUG00000029365)	tnnt2d (ENSELUG00000015595)	dnm1l (ENSELUG00000009177)	dnajb9a (ENSELUG00000030103)	ENSELUG00000009230	NRCAM (ENSELUG00000009528)	CNTN1 (ENSELUG00000009649)	PDZRN4 (ENSELUG00000009706)	GXYLT1 (ENSELUG00000009783)	YAF2 (ENSELUG00000009802)	ENSELUG00000009809	prickle1a (ENSELUG00000009843)	ENSELUG00000009865	ric8a (ENSELUG00000009893)	TPCN2 (ENSELUG00000009976) #20	CCND1 (ENSELUG00000010020) #22	FGF4 (ENSELUG00000029727) #25	FGF3 (ENSELUG00000010037) #26	ANO1 (ENSELUG00000010127) #28	shank2b (ENSELUG00000010259) #31	acte1 (ENSELUG00000010314)	guca1g (ENSELUG00000010338)	zgc:101566 (ENSELUG00000025978)	chst1 (ENSELUG00000010348)	cry2 (ENSELUG00000010362)	mapk8ip1a (ENSELUG00000010376)	ENSELUG00000030689	ENSELUG00000027421	ENSELUG00000010502	ENSELUG00000010516	ENSELUG00000010555
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000157816.b #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000157816.b #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000157816.b #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000157816.b #22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000157816.b #22
Eupercaria	ANCESTRAL SPECIES																	ENSGT00940000157816.b #22
Eupecaria_A	ANCESTRAL SPECIES																	ENSGT00940000157816.b #22
Ballan wrasse	MODERN SPECIES	4711																ENSLBEG00000004694 #22
Cod	MODERN SPECIES	5	ENSGMOG00000031747	ENSGMOG00000019184	ENSGMOG00000019187	ENSGMOG00000003608	ENSGMOG00000019973	ENSGMOG00000026896	ENSGMOG00000032577	ENSGMOG00000034850	ENSGMOG00000013326	ENSGMOG00000033336	ENSGMOG00000008278	ENSGMOG00000019912	ENSGMOG00000029743	ENSGMOG00000004788	ENSGMOG00000015699	CCND1 (ENSGMOG00000015686) #22	lto1 (ENSGMOG00000015712)	fgf19 (ENSGMOG00000020176) #24	fgf4 (ENSGMOG00000029653) #25	fgf3 (ENSGMOG00000024399) #26	zgc:153993 (ENSGMOG00000014875)	ano1a (ENSGMOG00000014890) #28	MNS1 (ENSGMOG00000007358)	ENSGMOG00000007344	ENSGMOG00000025531	ENSGMOG00000026141	ENSGMOG00000031396	ENSGMOG00000024028	TCF12 (ENSGMOG00000015710)	CGNL1 (ENSGMOG00000015651)	MYZAP (ENSGMOG00000015621)
Elephant shark	MODERN SPECIES	1493	NELL1 (ENSCMIG00000016778)	slc6a5 (ENSCMIG00000016797)	ENSCMIG00000016799	prmt3 (ENSCMIG00000016807)	htatip2 (ENSCMIG00000016814)	dbx1a (ENSCMIG00000016817)	NAV2 (ENSCMIG00000016877)	E2F8 (ENSCMIG00000016976)	csrp3 (ENSCMIG00000016981)	ZDHHC13 (ENSCMIG00000017005)	ENSCMIG00000017024	ENSCMIG00000017052	dhcr7 (ENSCMIG00000017066) #33	nadsyn1 (ENSCMIG00000017096) #34	ENSCMIG00000017116 #20	CCND1 (ENSCMIG00000017119) #22	lto1 (ENSCMIG00000017122)	FGF19 (ENSCMIG00000017126) #24	fgf4 (ENSCMIG00000017135) #25	fgf3 (ENSCMIG00000017158) #26	ENSCMIG00000017168	ano1a (ENSCMIG00000017298) #28	ENSCMIG00000017469	PPFIA1 (ENSCMIG00000017484) #29	CTTN (ENSCMIG00000017527) #30	shank2b (ENSCMIG00000017626) #31	ENSCMIG00000017725	ENSCMIG00000017731	ENSCMIG00000017732	zgc:101566 (ENSCMIG00000017734)	chst1 (ENSCMIG00000017735)