Hystricomorpha	ANCESTRAL SPECIES	33	ENSGT00940000155077.e.b	ENSGT00940000158583	ENSGT00940000156899 #7	ENSGT00940000155226.q.a.d #8	ENSGT00940000154832.m.a ##10	ENSGT00390000010439 #11	ENSGT00940000160091 #12	ENSGT00940000156487 #13	ENSGT00940000160820 #14	ENSGT00390000002319 #15	ENSGT00940000153304.B #16	ENSGT00940000156982 #17	ENSGT00390000004660.C.a.b #18	ENSGT00940000158220 #19	ENSGT00940000156774 #21	ENSGT00390000018691 #22	ENSGT00940000159673	ENSGT00530000063876.b #23	ENSGT00940000156540 #24	ENSGT00940000159098 #25	ENSGT00730000111179.b #26	ENSGT01030000234620.a.b.a #27	ENSGT00390000006996 #28	ENSGT00940000158836 #29	ENSGT00940000154656 #30	ENSGT00940000156116.C #31	ENSGT00390000012924.b #32	ENSGT00940000154746 #34	ENSGT00390000019941	ENSGT00940000159887 #35	ENSGT00940000157501 #36
Hystricomorpha_a	ANCESTRAL SPECIES	27	ENSGT00950000183050.b.a	ENSGT00940000158583	ENSGT00940000156899 #7	ENSGT00940000155226.q.a.d #8	ENSGT00940000154832.m.a ##10	ENSGT00390000010439 #11	ENSGT00940000160091 #12	ENSGT00940000156487 #13	ENSGT00940000160820 #14	ENSGT00390000002319 #15	ENSGT00940000153304.B #16	ENSGT00940000156982 #17	ENSGT00390000004660.C.a.b #18	ENSGT00940000158220 #19	ENSGT00940000156774 #21	ENSGT00390000018691 #22	ENSGT00940000159673	ENSGT00530000063876.b #23	ENSGT00940000156540 #24	ENSGT00940000159098 #25	ENSGT00730000111179.b #26	ENSGT01030000234620.a.b.a #27	ENSGT00390000006996 #28	ENSGT00940000158836 #29	ENSGT00940000154656 #30	ENSGT00940000156116.C #31	ENSGT00390000012924.b #32	ENSGT00940000154746 #34	ENSGT00390000019941	ENSGT00940000159887 #35	ENSGT00940000157501 #36
Guinea pig	MODERN SPECIES	20	PCNX4 (ENSCPOG00000003849) #7	ENSCPOG00000001327 #8	ENSCPOG00000005765 #9	PPM1A (ENSCPOG00000002465) #10	C14orf39 (ENSCPOG00000013118) #11	SIX6 (ENSCPOG00000023314) #12	SIX1 (ENSCPOG00000030782) #13	SIX4 (ENSCPOG00000040202) #14	MNAT1 (ENSCPOG00000014393) #15	TRMT5 (ENSCPOG00000014396) #16	SLC38A6 (ENSCPOG00000014399) #17	TMEM30B (ENSCPOG00000008415) #18	PRKCH (ENSCPOG00000009643) #19	ENSCPOG00000034835 #20	HIF1A (ENSCPOG00000005317) #21	SNAPC1 (ENSCPOG00000008437) #22	ENSCPOG00000001071 #23	KCNH5 (ENSCPOG00000001998) #24	RHOJ (ENSCPOG00000038888) #25	GPHB5 (ENSCPOG00000015248) #26	PPP2R5E (ENSCPOG00000034070) #27	WDR89 (ENSCPOG00000024713) #28	SGPP1 (ENSCPOG00000032209) #29	SYNE2 (ENSCPOG00000005654) #30	ESR2 (ENSCPOG00000005703) #31	ENSCPOG00000022181 #32	ENSCPOG00000033579 #33	MTHFD1 (ENSCPOG00000013111) #34	ZBTB25 (ENSCPOG00000012771) #35	ZBTB1 (ENSCPOG00000011379) #36	HSPA2 (ENSCPOG00000003486) #37
Hystricomorpha_b	ANCESTRAL SPECIES	46	ENSGT00950000183050.b.a	ENSGT00940000158583	ENSGT00940000156899 #7	ENSGT00940000155226.q.a.d #8	ENSGT00940000154832.m.a ##10	ENSGT00390000010439 #11	ENSGT00940000160091 #12	ENSGT00940000156487 #13	ENSGT00940000160820 #14	ENSGT00390000002319 #15	ENSGT00940000153304.B #16	ENSGT00940000156982 #17	ENSGT00390000004660.C.a.b #18	ENSGT00940000158220 #19	ENSGT00940000156774 #21	ENSGT00390000018691 #22	ENSGT00940000159673	ENSGT00530000063876.b #23	ENSGT00940000156540 #24	ENSGT00940000159098 #25	ENSGT00730000111179.b #26	ENSGT01030000234620.a.b.a #27	ENSGT00390000006996 #28	ENSGT00900000143157	ENSGT00940000154656 #30	ENSGT00940000156116.C #31	ENSGT00390000012924.b #32	ENSGT00940000154746 #34	ENSGT00390000019941	ENSGT00940000159887 #35	ENSGT00940000157501 #36
Long-tailed chinchilla	MODERN SPECIES	173	LRRC9 (ENSCLAG00000004301)	PCNX4 (ENSCLAG00000003900) #7	ENSCLAG00000003437 #8	ENSCLAG00000004431 #9	ENSCLAG00000004367 ##10	C14orf39 (ENSCLAG00000004039) #11	SIX6 (ENSCLAG00000003715) #12	SIX1 (ENSCLAG00000003638) #13	SIX4 (ENSCLAG00000003346) #14	MNAT1 (ENSCLAG00000003132) #15	TRMT5 (ENSCLAG00000013155) #16	SLC38A6 (ENSCLAG00000011126) #17	TMEM30B (ENSCLAG00000017947) #18	PRKCH (ENSCLAG00000008536) #19	HIF1A (ENSCLAG00000008011) #21	SNAPC1 (ENSCLAG00000007486) #22	SYT16 (ENSCLAG00000007034)	ENSCLAG00000017698 #23	KCNH5 (ENSCLAG00000008714) #24	RHOJ (ENSCLAG00000008332) #25	GPHB5 (ENSCLAG00000008445) #26	PPP2R5E (ENSCLAG00000008211) #27	WDR89 (ENSCLAG00000017740) #28	ENSCLAG00000007071	ENSCLAG00000006769 #30	ENSCLAG00000005895 #30	ESR2 (ENSCLAG00000005080) #31	ENSCLAG00000004312 #32	ENSCLAG00000004145	MTHFD1 (ENSCLAG00000003998) #34	AKAP5 (ENSCLAG00000017594)
Degu	MODERN SPECIES	48	LRRC9 (ENSODEG00000014066)	PCNX4 (ENSODEG00000014733) #7	DHRS7 (ENSODEG00000014507) #8	PPM1A (ENSODEG00000013831) ##10	C14orf39 (ENSODEG00000013986) #11	SIX6 (ENSODEG00000015945) #12	SIX1 (ENSODEG00000014839) #13	ENSODEG00000014677 #14	ENSODEG00000020154	ENSODEG00000014326 #15	TRMT5 (ENSODEG00000013922) #16	SLC38A6 (ENSODEG00000013938) #17	TMEM30B (ENSODEG00000020291) #18	PRKCH (ENSODEG00000014028) #19	ENSODEG00000013923 #21	SNAPC1 (ENSODEG00000013628) #22	SYT16 (ENSODEG00000013987)	ENSODEG00000020109 #23	KCNH5 (ENSODEG00000014937) #24	RHOJ (ENSODEG00000015316) #25	GPHB5 (ENSODEG00000013875) #26	ENSODEG00000020183	ENSODEG00000013571	PPP2R5E (ENSODEG00000014614) #27	SGPP1 (ENSODEG00000014395) #29	ENSODEG00000014801	ENSODEG00000014577	ENSODEG00000013718 #30	ESR2 (ENSODEG00000014359) #31	ENSODEG00000014746 #32	ENSODEG00000020168
Naked mole-rat female	MODERN SPECIES	18	PPM1A (ENSHGLG00000012982) ##10	ENSHGLG00000010109 #11	SIX6 (ENSHGLG00000009630) #12	SIX1 (ENSHGLG00000042472) #13	MNAT1 (ENSHGLG00000011704) #15	ENSHGLG00000034744	SIX4 (ENSHGLG00000039890) #14	ENSHGLG00000013713 #16	SLC38A6 (ENSHGLG00000017725) #17	ENSHGLG00000014198	ENSHGLG00000044483	TMEM30B (ENSHGLG00000044417) #18	ENSHGLG00000018060 #19	ENSHGLG00000050055	Hif1a (ENSHGLG00000016000) #21	ENSHGLG00000015646 #22	ENSHGLG00000048114	ENSHGLG00000042936 #23	ENSHGLG00000007518	ENSHGLG00000047278	ENSHGLG00000039777	ENSHGLG00000047911	ENSHGLG00000010765 #24	ENSHGLG00000036980 #25	ENSHGLG00000033236	GPHB5 (ENSHGLG00000046983) #26	PPP2R5E (ENSHGLG00000012357) #27	ENSHGLG00000039674	WDR89 (ENSHGLG00000037580) #28	ENSHGLG00000037922	ENSHGLG00000046704 #29