Hystricomorpha	ANCESTRAL SPECIES	33	ENSGT00940000155077.e.b	ENSGT00940000158583 #7	ENSGT00940000156899 #8	ENSGT00940000155226.q.a.d #9	ENSGT00940000154832.m.a #11	ENSGT00390000010439 #12	ENSGT00940000160091 #13	ENSGT00940000156487 #14	ENSGT00940000160820 #15	ENSGT00390000002319 #16	ENSGT00940000153304.B #17	ENSGT00940000156982 #18	ENSGT00390000004660.C.a.b #19	ENSGT00940000158220 #20	ENSGT00940000156774 #21	ENSGT00390000018691 #22	ENSGT00940000159673 #23	ENSGT00530000063876.b #24	ENSGT00940000156540 #25	ENSGT00940000159098 #26	ENSGT00730000111179.b #27	ENSGT01030000234620.a.b.a #28	ENSGT00390000006996 #29	ENSGT00940000158836	ENSGT00940000154656 #31	ENSGT00940000156116.C #33	ENSGT00390000012924.b #34	ENSGT00940000154746 #36	ENSGT00390000019941 #37	ENSGT00940000159887	ENSGT00940000157501
Hystricomorpha_a	ANCESTRAL SPECIES	27	ENSGT00950000183050.b.a	ENSGT00940000158583 #7	ENSGT00940000156899 #8	ENSGT00940000155226.q.a.d #9	ENSGT00940000154832.m.a #11	ENSGT00390000010439 #12	ENSGT00940000160091 #13	ENSGT00940000156487 #14	ENSGT00940000160820 #15	ENSGT00390000002319 #16	ENSGT00940000153304.B #17	ENSGT00940000156982 #18	ENSGT00390000004660.C.a.b #19	ENSGT00940000158220 #20	ENSGT00940000156774 #21	ENSGT00390000018691 #22	ENSGT00940000159673 #23	ENSGT00530000063876.b #24	ENSGT00940000156540 #25	ENSGT00940000159098 #26	ENSGT00730000111179.b #27	ENSGT01030000234620.a.b.a #28	ENSGT00390000006996 #29	ENSGT00940000158836	ENSGT00940000154656 #31	ENSGT00940000156116.C #33	ENSGT00390000012924.b #34	ENSGT00940000154746 #36	ENSGT00390000019941 #37	ENSGT00940000159887	ENSGT00940000157501
Hystricomorpha_b	ANCESTRAL SPECIES	46	ENSGT00950000183050.b.a	ENSGT00940000158583 #7	ENSGT00940000156899 #8	ENSGT00940000155226.q.a.d #9	ENSGT00940000154832.m.a #11	ENSGT00390000010439 #12	ENSGT00940000160091 #13	ENSGT00940000156487 #14	ENSGT00940000160820 #15	ENSGT00390000002319 #16	ENSGT00940000153304.B #17	ENSGT00940000156982 #18	ENSGT00390000004660.C.a.b #19	ENSGT00940000158220 #20	ENSGT00940000156774 #21	ENSGT00390000018691 #22	ENSGT00940000159673 #23	ENSGT00530000063876.b #24	ENSGT00940000156540 #25	ENSGT00940000159098 #26	ENSGT00730000111179.b #27	ENSGT01030000234620.a.b.a #28	ENSGT00390000006996 #29	ENSGT00900000143157 #30	ENSGT00940000154656 #31	ENSGT00940000156116.C #33	ENSGT00390000012924.b #34	ENSGT00940000154746 #36	ENSGT00390000019941 #37	ENSGT00940000159887	ENSGT00940000157501
Long-tailed chinchilla	MODERN SPECIES	173	LRRC9 (ENSCLAG00000004301) #7	PCNX4 (ENSCLAG00000003900) #8	ENSCLAG00000003437 #9	ENSCLAG00000004431 #10	ENSCLAG00000004367 #11	C14orf39 (ENSCLAG00000004039) #12	SIX6 (ENSCLAG00000003715) #13	SIX1 (ENSCLAG00000003638) #14	SIX4 (ENSCLAG00000003346) #15	MNAT1 (ENSCLAG00000003132) #16	TRMT5 (ENSCLAG00000013155) #17	SLC38A6 (ENSCLAG00000011126) #18	TMEM30B (ENSCLAG00000017947) #19	PRKCH (ENSCLAG00000008536) #20	HIF1A (ENSCLAG00000008011) #21	SNAPC1 (ENSCLAG00000007486) #22	SYT16 (ENSCLAG00000007034) #23	ENSCLAG00000017698 #24	KCNH5 (ENSCLAG00000008714) #25	RHOJ (ENSCLAG00000008332) #26	GPHB5 (ENSCLAG00000008445) #27	PPP2R5E (ENSCLAG00000008211) #28	WDR89 (ENSCLAG00000017740) #29	ENSCLAG00000007071 #30	ENSCLAG00000006769 #31	ENSCLAG00000005895 #32	ESR2 (ENSCLAG00000005080) #33	ENSCLAG00000004312 #34	ENSCLAG00000004145 #35	MTHFD1 (ENSCLAG00000003998) #36	AKAP5 (ENSCLAG00000017594) #37
Degu	MODERN SPECIES	48	LRRC9 (ENSODEG00000014066) #7	PCNX4 (ENSODEG00000014733) #8	DHRS7 (ENSODEG00000014507) #9	PPM1A (ENSODEG00000013831) #11	C14orf39 (ENSODEG00000013986) #12	SIX6 (ENSODEG00000015945) #13	SIX1 (ENSODEG00000014839) #14	ENSODEG00000014677 #15	ENSODEG00000020154	ENSODEG00000014326 #16	TRMT5 (ENSODEG00000013922) #17	SLC38A6 (ENSODEG00000013938) #18	TMEM30B (ENSODEG00000020291) #19	PRKCH (ENSODEG00000014028) #20	ENSODEG00000013923 #21	SNAPC1 (ENSODEG00000013628) #22	SYT16 (ENSODEG00000013987) #23	ENSODEG00000020109 #24	KCNH5 (ENSODEG00000014937) #25	RHOJ (ENSODEG00000015316) #26	GPHB5 (ENSODEG00000013875) #27	ENSODEG00000020183	ENSODEG00000013571	PPP2R5E (ENSODEG00000014614) #28	SGPP1 (ENSODEG00000014395)	ENSODEG00000014801	ENSODEG00000014577 #30	ENSODEG00000013718 #31	ESR2 (ENSODEG00000014359) #33	ENSODEG00000014746 #34	ENSODEG00000020168
Guinea pig	MODERN SPECIES	20	PCNX4 (ENSCPOG00000003849) #8	ENSCPOG00000001327 #9	ENSCPOG00000005765 #10	PPM1A (ENSCPOG00000002465) ##11	C14orf39 (ENSCPOG00000013118) #12	SIX6 (ENSCPOG00000023314) #13	SIX1 (ENSCPOG00000030782) #14	SIX4 (ENSCPOG00000040202) #15	MNAT1 (ENSCPOG00000014393) #16	TRMT5 (ENSCPOG00000014396) #17	SLC38A6 (ENSCPOG00000014399) #18	TMEM30B (ENSCPOG00000008415) #19	PRKCH (ENSCPOG00000009643) #20	ENSCPOG00000034835	HIF1A (ENSCPOG00000005317) #21	SNAPC1 (ENSCPOG00000008437) #22	ENSCPOG00000001071 #24	KCNH5 (ENSCPOG00000001998) #25	RHOJ (ENSCPOG00000038888) #26	GPHB5 (ENSCPOG00000015248) #27	PPP2R5E (ENSCPOG00000034070) #28	WDR89 (ENSCPOG00000024713) #29	SGPP1 (ENSCPOG00000032209)	SYNE2 (ENSCPOG00000005654) #31	ESR2 (ENSCPOG00000005703) #33	ENSCPOG00000022181 #34	ENSCPOG00000033579	MTHFD1 (ENSCPOG00000013111) #36	ZBTB25 (ENSCPOG00000012771)	ZBTB1 (ENSCPOG00000011379)	HSPA2 (ENSCPOG00000003486)
Naked mole-rat female	MODERN SPECIES	18	PPM1A (ENSHGLG00000012982) ##11	ENSHGLG00000010109 #12	SIX6 (ENSHGLG00000009630) #13	SIX1 (ENSHGLG00000042472) #14	MNAT1 (ENSHGLG00000011704) #16	ENSHGLG00000034744	SIX4 (ENSHGLG00000039890) #15	ENSHGLG00000013713 #17	SLC38A6 (ENSHGLG00000017725) #18	ENSHGLG00000014198	ENSHGLG00000044483	TMEM30B (ENSHGLG00000044417) #19	ENSHGLG00000018060 #20	ENSHGLG00000050055	Hif1a (ENSHGLG00000016000) #21	ENSHGLG00000015646 #22	ENSHGLG00000048114 #23	ENSHGLG00000042936 #24	ENSHGLG00000007518	ENSHGLG00000047278	ENSHGLG00000039777	ENSHGLG00000047911	ENSHGLG00000010765 #25	ENSHGLG00000036980 #26	ENSHGLG00000033236	GPHB5 (ENSHGLG00000046983) #27	PPP2R5E (ENSHGLG00000012357) #28	ENSHGLG00000039674	WDR89 (ENSHGLG00000037580) #29	ENSHGLG00000037922	ENSHGLG00000046704