Mus	ANCESTRAL SPECIES	10	ENSGT00940000158583 #7	ENSGT00940000156899 #8	ENSGT00940000155226.q.a #9	ENSGT00940000155226.q.b ##9	ENSGT00940000154832.n #11	ENSGT00390000010439 #12	ENSGT00940000160091 #13	ENSGT00940000156487 #14	ENSGT00940000160820 #15	ENSGT00390000002319 #16	ENSGT00940000153304.B #17	ENSGT00940000156982 #18	ENSGT00390000004660.C.a.b #19	ENSGT00940000158220 #20	ENSGT00940000156774 #21	ENSGT00390000018691 #22	ENSGT00940000159673 #23	ENSGT00530000063876.b	ENSGT00940000156540 #25	ENSGT00940000159098 #26	ENSGT00730000111179.b #27	ENSGT01030000234620.a.b.a #28	ENSGT00390000006996 #29	ENSGT00940000158836 #30	ENSGT00940000154656 #31	ENSGT00940000156116.C #32	ENSGT00390000012924.b #33	ENSGT00940000154746 #34	ENSGT00390000019941 #35	ENSGT00940000159887 #36	ENSGT00940000157501 #37
Shrew mouse	MODERN SPECIES	20	Lrrc9 (MGP_PahariEiJ_G0029591) #7	Pcnx4 (MGP_PahariEiJ_G0029592) #8	MGP_PahariEiJ_G0029593 #9	MGP_PahariEiJ_G0029594 #10	Ppm1a (MGP_PahariEiJ_G0029595) #11	4930447C04Rik (MGP_PahariEiJ_G0029596) #12	Six6 (MGP_PahariEiJ_G0029597) #13	Six1 (MGP_PahariEiJ_G0029598) #14	Six4 (MGP_PahariEiJ_G0029599) #15	Mnat1 (MGP_PahariEiJ_G0029600) #16	Trmt5 (MGP_PahariEiJ_G0029601) #17	Slc38a6 (MGP_PahariEiJ_G0029602) #18	Tmem30b (MGP_PahariEiJ_G0029603) #19	Prkch (MGP_PahariEiJ_G0029604) #20	Hif1a (MGP_PahariEiJ_G0029605) #21	Snapc1 (MGP_PahariEiJ_G0029606) #22	MGP_PahariEiJ_G0029607 #23	MGP_PahariEiJ_G0029608 #24	Kcnh5 (MGP_PahariEiJ_G0029609) #25	Rhoj (MGP_PahariEiJ_G0029610) #26	Gphb5 (MGP_PahariEiJ_G0029611) #27	Ppp2r5e (MGP_PahariEiJ_G0029612) #28	Wdr89 (MGP_PahariEiJ_G0029613) #29	Sgpp1 (MGP_PahariEiJ_G0029614) #30	Syne2 (MGP_PahariEiJ_G0029615) #31	Esr2 (MGP_PahariEiJ_G0029616) #32	Tex21 (MGP_PahariEiJ_G0029617) #33	Mthfd1 (MGP_PahariEiJ_G0029618) #34	Akap5 (MGP_PahariEiJ_G0029619) #35	Zbtb25 (MGP_PahariEiJ_G0029620) #36	Zbtb1 (MGP_PahariEiJ_G0029621) #37
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000158583 #7	ENSGT00940000156899 #8	ENSGT00940000155226.q.a #9	ENSGT00940000155226.q.b ##9	ENSGT00940000154832.n #11	ENSGT00390000010439 #12	ENSGT00940000160091 #13	ENSGT00940000156487 #14	ENSGT00940000160820 #15	ENSGT00390000002319 #16	ENSGT00940000153304.B #17	ENSGT00940000156982 #18	ENSGT00390000004660.C.a.b #19	ENSGT00940000158220 #20	ENSGT00940000156774 #21	ENSGT00390000018691 #22	ENSGT00940000159673 #23	ENSGT00530000063876.b	ENSGT00940000156540 #25	ENSGT00940000159098 #26	ENSGT00730000111179.b #27	ENSGT01030000234620.a.b.a #28	ENSGT00390000006996 #29	ENSGT00940000158836 #30	ENSGT00940000154656 #31	ENSGT00940000156116.C #32	ENSGT00390000012924.b #33	ENSGT00940000154746 #34	ENSGT00390000019941 #35	ENSGT00940000159887 #36	ENSGT00940000157501 #37
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000158583 #7	ENSGT00940000156899 #8	ENSGT00940000155226.q.a #9	ENSGT00940000155226.q.b ##9	ENSGT00940000154832.n #11	ENSGT00390000010439 #12	ENSGT00940000160091 #13	ENSGT00940000156487 #14	ENSGT00940000160820 #15	ENSGT00390000002319 #16	ENSGT00940000153304.B #17	ENSGT00940000156982 #18	ENSGT00390000004660.C.a.b #19	ENSGT00940000158220 #20	ENSGT00940000156774 #21	ENSGT00390000018691 #22	ENSGT00940000159673 #23	ENSGT00530000063876.b	ENSGT00940000156540 #25	ENSGT00940000159098 #26	ENSGT00730000111179.b #27	ENSGT01030000234620.a.b.a #28	ENSGT00390000006996 #29	ENSGT00940000158836 #30	ENSGT00940000154656 #31	ENSGT00940000156116.C #32	ENSGT00390000012924.b #33	ENSGT00940000154746 #34	ENSGT00390000019941 #35	ENSGT00940000159887 #36	ENSGT00940000157501 #37
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000158583 #7	ENSGT00940000156899 #8	ENSGT00940000155226.q.a #9	ENSGT00940000155226.q.b ##9	ENSGT00940000154832.n #11	ENSGT00390000010439 #12	ENSGT00940000160091 #13	ENSGT00940000156487 #14	ENSGT00940000160820 #15	ENSGT00390000002319 #16	ENSGT00940000153304.B #17	ENSGT00940000156982 #18	ENSGT00390000004660.C.a.b #19	ENSGT00940000158220 #20	ENSGT00940000156774 #21	ENSGT00390000018691 #22	ENSGT00940000159673 #23	ENSGT00530000063876.b	ENSGT00940000156540 #25	ENSGT00940000159098 #26	ENSGT00730000111179.b #27	ENSGT01030000234620.a.b.a #28	ENSGT00390000006996 #29	ENSGT00940000158836 #30	ENSGT00940000154656 #31	ENSGT00940000156116.C #32	ENSGT00390000012924.b #33	ENSGT00940000154746 #34	ENSGT00390000019941 #35	ENSGT00940000159887 #36	ENSGT00940000157501 #37
Steppe mouse	MODERN SPECIES	3155	Dhrs7 (ENSMSIG00000024915) ##9	ENSMSIG00000024898 #11	4930447C04Rik (ENSMSIG00000024836) #12	Six6 (ENSMSIG00000024826) #13	ENSMSIG00000024815	Six1 (ENSMSIG00000024807) #14	Six4 (ENSMSIG00000024804) #15	ENSMSIG00000024789	Mnat1 (ENSMSIG00000024773) #16	Trmt5 (ENSMSIG00000024766) #17	Slc38a6 (ENSMSIG00000024679) #18	Tmem30b (ENSMSIG00000024663) #19	Prkch (ENSMSIG00000024638) #20	Hif1a (ENSMSIG00000024611) #21	ENSMSIG00000024606	Snapc1 (ENSMSIG00000024569) #22
spretus	MODERN SPECIES	3	Pcnx4 (MGP_SPRETEiJ_G0018681) #8	MGP_SPRETEiJ_G0018682 #9	Dhrs7 (MGP_SPRETEiJ_G0018683) ##9	MGP_SPRETEiJ_G0018684 #11	4930447C04Rik (MGP_SPRETEiJ_G0018685) #12	Six6 (MGP_SPRETEiJ_G0018686) #13	Six1 (MGP_SPRETEiJ_G0018687) #14	Six4 (MGP_SPRETEiJ_G0018688) #15	Mnat1 (MGP_SPRETEiJ_G0018689) #16	Trmt5 (MGP_SPRETEiJ_G0018690) #17	Slc38a6 (MGP_SPRETEiJ_G0018691) #18	MGP_SPRETEiJ_G0018692	Tmem30b (MGP_SPRETEiJ_G0018693) #19	Prkch (MGP_SPRETEiJ_G0018694) #20	Hif1a (MGP_SPRETEiJ_G0018695) #21	Snapc1 (MGP_SPRETEiJ_G0018696) #22	MGP_SPRETEiJ_G0018697 #23	MGP_SPRETEiJ_G0018698 #24	Kcnh5 (MGP_SPRETEiJ_G0018699) #25	Rhoj (MGP_SPRETEiJ_G0018700) #26	Gphb5 (MGP_SPRETEiJ_G0018701) #27	Ppp2r5e (MGP_SPRETEiJ_G0018702) #28	Wdr89 (MGP_SPRETEiJ_G0018703) #29	Sgpp1 (MGP_SPRETEiJ_G0018704) #30	Syne2 (MGP_SPRETEiJ_G0018705) #31	Esr2 (MGP_SPRETEiJ_G0018706) #32	Tex21 (MGP_SPRETEiJ_G0018707) #33	Mthfd1 (MGP_SPRETEiJ_G0018708) #34	Akap5 (MGP_SPRETEiJ_G0018709) #35	Zbtb25 (MGP_SPRETEiJ_G0018710) #36	Zbtb1 (MGP_SPRETEiJ_G0018711) #37
Mouse	MODERN SPECIES	3	Lrrc9 (ENSMUSG00000021090) #7	Pcnx4 (ENSMUSG00000034501) #8	Gm4756 (ENSMUSG00000109482) #9	Dhrs7 (ENSMUSG00000021094) ##9	Ppm1a (ENSMUSG00000021096) #11	4930447C04Rik (ENSMUSG00000021098) #12	Six6 (ENSMUSG00000021099) #13	Six1 (ENSMUSG00000051367) #14	Six4 (ENSMUSG00000034460) #15	Mnat1 (ENSMUSG00000021103) #16	Trmt5 (ENSMUSG00000034442) #17	Slc38a6 (ENSMUSG00000044712) #18	Tmem30b (ENSMUSG00000034435) #19	Prkch (ENSMUSG00000021108) #20	Hif1a (ENSMUSG00000021109) #21	Snapc1 (ENSMUSG00000021113) #22	Syt16 (ENSMUSG00000044912) #23	Kcnh5 (ENSMUSG00000034402) #25	Rhoj (ENSMUSG00000046768) #26	Gphb5 (ENSMUSG00000048982) #27	Ppp2r5e (ENSMUSG00000021051) #28	Wdr89 (ENSMUSG00000045690) #29	Rplp2-ps1 (ENSMUSG00000118552)	Sgpp1 (ENSMUSG00000021054) #30	Syne2 (ENSMUSG00000063450) #31	Esr2 (ENSMUSG00000021055) #32	Tex21 (ENSMUSG00000021056) #33	Mthfd1 (ENSMUSG00000021048) #34	Akap5 (ENSMUSG00000021057) #35	Zbtb25 (ENSMUSG00000056459) #36	Zbtb1 (ENSMUSG00000033454) #37
Ryukyu mouse	MODERN SPECIES	3	Rtn1 (MGP_CAROLIEiJ_G0017834)	Lrrc9 (MGP_CAROLIEiJ_G0017835) #7	Pcnx4 (MGP_CAROLIEiJ_G0017836) #8	Dhrs7 (MGP_CAROLIEiJ_G0017837) ##9	4930447C04Rik (MGP_CAROLIEiJ_G0017838) #12	Six6 (MGP_CAROLIEiJ_G0017839) #13	Six1 (MGP_CAROLIEiJ_G0017840) #14	Six4 (MGP_CAROLIEiJ_G0017841) #15	Mnat1 (MGP_CAROLIEiJ_G0017842) #16	Trmt5 (MGP_CAROLIEiJ_G0017843) #17	Slc38a6 (MGP_CAROLIEiJ_G0017844) #18	MGP_CAROLIEiJ_G0017845	Tmem30b (MGP_CAROLIEiJ_G0017846) #19	Prkch (MGP_CAROLIEiJ_G0017847) #20	Hif1a (MGP_CAROLIEiJ_G0017848) #21	Snapc1 (MGP_CAROLIEiJ_G0017849) #22	MGP_CAROLIEiJ_G0017850 #23	MGP_CAROLIEiJ_G0017851 #24	Kcnh5 (MGP_CAROLIEiJ_G0017852) #25	Rhoj (MGP_CAROLIEiJ_G0017853) #26	Gphb5 (MGP_CAROLIEiJ_G0017854) #27	Ppp2r5e (MGP_CAROLIEiJ_G0017855) #28	Wdr89 (MGP_CAROLIEiJ_G0017856) #29	Sgpp1 (MGP_CAROLIEiJ_G0017857) #30	Syne2 (MGP_CAROLIEiJ_G0017858) #31	Esr2 (MGP_CAROLIEiJ_G0017859) #32	Tex21 (MGP_CAROLIEiJ_G0017860) #33	Mthfd1 (MGP_CAROLIEiJ_G0017861) #34	Akap5 (MGP_CAROLIEiJ_G0017862) #35	Zbtb25 (MGP_CAROLIEiJ_G0017863) #36	Zbtb1 (MGP_CAROLIEiJ_G0017864) #37