Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000158583	ENSGT00940000156899	ENSGT00940000155226.q.a ##7	ENSGT00940000155226.q.b #7	ENSGT00940000154832.n #8	ENSGT00390000010439 #9	ENSGT00940000160091 #10	ENSGT00940000156487 #12	ENSGT00940000160820 #13	ENSGT00390000002319 #15	ENSGT00940000153304.B #16	ENSGT00940000156982 #17	ENSGT00390000004660.C.a.b #18	ENSGT00940000158220 #19	ENSGT00940000156774 #20	ENSGT00390000018691 #22	ENSGT00940000159673	ENSGT00530000063876.b	ENSGT00940000156540	ENSGT00940000159098	ENSGT00730000111179.b	ENSGT01030000234620.a.b.a	ENSGT00390000006996	ENSGT00940000158836	ENSGT00940000154656	ENSGT00940000156116.C	ENSGT00390000012924.b	ENSGT00940000154746	ENSGT00390000019941	ENSGT00940000159887	ENSGT00940000157501
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000158583	ENSGT00940000156899	ENSGT00940000155226.q.a ##7	ENSGT00940000155226.q.b #7	ENSGT00940000154832.n #8	ENSGT00390000010439 #9	ENSGT00940000160091 #10	ENSGT00940000156487 #12	ENSGT00940000160820 #13	ENSGT00390000002319 #15	ENSGT00940000153304.B #16	ENSGT00940000156982 #17	ENSGT00390000004660.C.a.b #18	ENSGT00940000158220 #19	ENSGT00940000156774 #20	ENSGT00390000018691 #22	ENSGT00940000159673	ENSGT00530000063876.b	ENSGT00940000156540	ENSGT00940000159098	ENSGT00730000111179.b	ENSGT01030000234620.a.b.a	ENSGT00390000006996	ENSGT00940000158836	ENSGT00940000154656	ENSGT00940000156116.C	ENSGT00390000012924.b	ENSGT00940000154746	ENSGT00390000019941	ENSGT00940000159887	ENSGT00940000157501
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000158583	ENSGT00940000156899	ENSGT00940000155226.q.a ##7	ENSGT00940000155226.q.b #7	ENSGT00940000154832.n #8	ENSGT00390000010439 #9	ENSGT00940000160091 #10	ENSGT00940000156487 #12	ENSGT00940000160820 #13	ENSGT00390000002319 #15	ENSGT00940000153304.B #16	ENSGT00940000156982 #17	ENSGT00390000004660.C.a.b #18	ENSGT00940000158220 #19	ENSGT00940000156774 #20	ENSGT00390000018691 #22	ENSGT00940000159673	ENSGT00530000063876.b	ENSGT00940000156540	ENSGT00940000159098	ENSGT00730000111179.b	ENSGT01030000234620.a.b.a	ENSGT00390000006996	ENSGT00940000158836	ENSGT00940000154656	ENSGT00940000156116.C	ENSGT00390000012924.b	ENSGT00940000154746	ENSGT00390000019941	ENSGT00940000159887	ENSGT00940000157501
Steppe mouse	MODERN SPECIES	3155	Dhrs7 (ENSMSIG00000024915) #7	ENSMSIG00000024898 #8	4930447C04Rik (ENSMSIG00000024836) #9	Six6 (ENSMSIG00000024826) #10	ENSMSIG00000024815 #11	Six1 (ENSMSIG00000024807) #12	Six4 (ENSMSIG00000024804) #13	ENSMSIG00000024789 #14	Mnat1 (ENSMSIG00000024773) #15	Trmt5 (ENSMSIG00000024766) #16	Slc38a6 (ENSMSIG00000024679) #17	Tmem30b (ENSMSIG00000024663) #18	Prkch (ENSMSIG00000024638) #19	Hif1a (ENSMSIG00000024611) #20	ENSMSIG00000024606 #21	Snapc1 (ENSMSIG00000024569) #22
spretus	MODERN SPECIES	3	Pcnx4 (MGP_SPRETEiJ_G0018681)	MGP_SPRETEiJ_G0018682 ##7	Dhrs7 (MGP_SPRETEiJ_G0018683) #7	MGP_SPRETEiJ_G0018684 #8	4930447C04Rik (MGP_SPRETEiJ_G0018685) #9	Six6 (MGP_SPRETEiJ_G0018686) #10	Six1 (MGP_SPRETEiJ_G0018687) #12	Six4 (MGP_SPRETEiJ_G0018688) #13	Mnat1 (MGP_SPRETEiJ_G0018689) #15	Trmt5 (MGP_SPRETEiJ_G0018690) #16	Slc38a6 (MGP_SPRETEiJ_G0018691) #17	MGP_SPRETEiJ_G0018692	Tmem30b (MGP_SPRETEiJ_G0018693) #18	Prkch (MGP_SPRETEiJ_G0018694) #19	Hif1a (MGP_SPRETEiJ_G0018695) #20	Snapc1 (MGP_SPRETEiJ_G0018696) #22	MGP_SPRETEiJ_G0018697	MGP_SPRETEiJ_G0018698	Kcnh5 (MGP_SPRETEiJ_G0018699)	Rhoj (MGP_SPRETEiJ_G0018700)	Gphb5 (MGP_SPRETEiJ_G0018701)	Ppp2r5e (MGP_SPRETEiJ_G0018702)	Wdr89 (MGP_SPRETEiJ_G0018703)	Sgpp1 (MGP_SPRETEiJ_G0018704)	Syne2 (MGP_SPRETEiJ_G0018705)	Esr2 (MGP_SPRETEiJ_G0018706)	Tex21 (MGP_SPRETEiJ_G0018707)	Mthfd1 (MGP_SPRETEiJ_G0018708)	Akap5 (MGP_SPRETEiJ_G0018709)	Zbtb25 (MGP_SPRETEiJ_G0018710)	Zbtb1 (MGP_SPRETEiJ_G0018711)
Mouse	MODERN SPECIES	3	Lrrc9 (ENSMUSG00000021090)	Pcnx4 (ENSMUSG00000034501)	Gm4756 (ENSMUSG00000109482) ##7	Dhrs7 (ENSMUSG00000021094) #7	Ppm1a (ENSMUSG00000021096) #8	4930447C04Rik (ENSMUSG00000021098) #9	Six6 (ENSMUSG00000021099) #10	Six1 (ENSMUSG00000051367) #12	Six4 (ENSMUSG00000034460) #13	Mnat1 (ENSMUSG00000021103) #15	Trmt5 (ENSMUSG00000034442) #16	Slc38a6 (ENSMUSG00000044712) #17	Tmem30b (ENSMUSG00000034435) #18	Prkch (ENSMUSG00000021108) #19	Hif1a (ENSMUSG00000021109) #20	Snapc1 (ENSMUSG00000021113) #22	Syt16 (ENSMUSG00000044912)	Kcnh5 (ENSMUSG00000034402)	Rhoj (ENSMUSG00000046768)	Gphb5 (ENSMUSG00000048982)	Ppp2r5e (ENSMUSG00000021051)	Wdr89 (ENSMUSG00000045690)	Rplp2-ps1 (ENSMUSG00000118552)	Sgpp1 (ENSMUSG00000021054)	Syne2 (ENSMUSG00000063450)	Esr2 (ENSMUSG00000021055)	Tex21 (ENSMUSG00000021056)	Mthfd1 (ENSMUSG00000021048)	Akap5 (ENSMUSG00000021057)	Zbtb25 (ENSMUSG00000056459)	Zbtb1 (ENSMUSG00000033454)
Ryukyu mouse	MODERN SPECIES	3	Rtn1 (MGP_CAROLIEiJ_G0017834)	Lrrc9 (MGP_CAROLIEiJ_G0017835)	Pcnx4 (MGP_CAROLIEiJ_G0017836)	Dhrs7 (MGP_CAROLIEiJ_G0017837) #7	4930447C04Rik (MGP_CAROLIEiJ_G0017838) #9	Six6 (MGP_CAROLIEiJ_G0017839) #10	Six1 (MGP_CAROLIEiJ_G0017840) #12	Six4 (MGP_CAROLIEiJ_G0017841) #13	Mnat1 (MGP_CAROLIEiJ_G0017842) #15	Trmt5 (MGP_CAROLIEiJ_G0017843) #16	Slc38a6 (MGP_CAROLIEiJ_G0017844) #17	MGP_CAROLIEiJ_G0017845	Tmem30b (MGP_CAROLIEiJ_G0017846) #18	Prkch (MGP_CAROLIEiJ_G0017847) #19	Hif1a (MGP_CAROLIEiJ_G0017848) #20	Snapc1 (MGP_CAROLIEiJ_G0017849) #22	MGP_CAROLIEiJ_G0017850	MGP_CAROLIEiJ_G0017851	Kcnh5 (MGP_CAROLIEiJ_G0017852)	Rhoj (MGP_CAROLIEiJ_G0017853)	Gphb5 (MGP_CAROLIEiJ_G0017854)	Ppp2r5e (MGP_CAROLIEiJ_G0017855)	Wdr89 (MGP_CAROLIEiJ_G0017856)	Sgpp1 (MGP_CAROLIEiJ_G0017857)	Syne2 (MGP_CAROLIEiJ_G0017858)	Esr2 (MGP_CAROLIEiJ_G0017859)	Tex21 (MGP_CAROLIEiJ_G0017860)	Mthfd1 (MGP_CAROLIEiJ_G0017861)	Akap5 (MGP_CAROLIEiJ_G0017862)	Zbtb25 (MGP_CAROLIEiJ_G0017863)	Zbtb1 (MGP_CAROLIEiJ_G0017864)