Mus	ANCESTRAL SPECIES	12	ENSGT00940000161705 #7	ENSGT00390000018097.j #9	ENSGT00940000156351 #10	ENSGT00940000154761 #11	ENSGT00940000165681 #12	ENSGT00940000163007	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371	ENSGT00940000160552	ENSGT01030000234578.A.b.a.a.b #24	ENSGT00390000001901 #25	ENSGT00390000007992 #26	ENSGT00940000161711 #27	ENSGT00940000161151 #28	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35	ENSGT00950000182832.C #36
Shrew mouse	MODERN SPECIES	11	Lrrtm1 (MGP_PahariEiJ_G0022253) #7	Ctnna2 (MGP_PahariEiJ_G0022252) #8	Jkampl (MGP_PahariEiJ_G0022251) #9	Suclg1 (MGP_PahariEiJ_G0022250) #10	Dnah6 (MGP_PahariEiJ_G0022249) #11	Tmsb10 (MGP_PahariEiJ_G0022248) #12	Kcmf1 (MGP_PahariEiJ_G0022247) #13	Tcf7l1 (MGP_PahariEiJ_G0022246) #14	MGP_PahariEiJ_G0022245 #15	Retsat (MGP_PahariEiJ_G0022244) #16	Elmod3 (MGP_PahariEiJ_G0022243) #17	Capg (MGP_PahariEiJ_G0022242) #18	Sh2d6 (MGP_PahariEiJ_G0022241) #19	Mat2a (MGP_PahariEiJ_G0022240) #20	Ggcx (MGP_PahariEiJ_G0022239) #21	Vamp8 (MGP_PahariEiJ_G0022238) #22	Rnf181 (MGP_PahariEiJ_G0022237) #23	Tmem150a (MGP_PahariEiJ_G0022236) #24	0610030E20Rik (MGP_PahariEiJ_G0022235) #25	Usp39 (MGP_PahariEiJ_G0022234) #26	Sftpb (MGP_PahariEiJ_G0022233) #27	Atoh8 (MGP_PahariEiJ_G0022232) #28	St3gal5 (MGP_PahariEiJ_G0022231) #29	Polr1a (MGP_PahariEiJ_G0022230) #30	Ptcd3 (MGP_PahariEiJ_G0022229) #31	Immt (MGP_PahariEiJ_G0022228) #32	Mrpl35 (MGP_PahariEiJ_G0022227) #33	MGP_PahariEiJ_G0022226 #34	Kdm3a (MGP_PahariEiJ_G0022225) #35	Chmp3 (MGP_PahariEiJ_G0022224) #36	Rnf103 (MGP_PahariEiJ_G0022223) #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000161705 #7	ENSGT00390000018097.j #9	ENSGT00940000156351 #10	ENSGT00940000154761 #11	ENSGT00940000165681 #12	ENSGT00940000163007	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.g #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371	ENSGT00940000160552	ENSGT01030000234578.A.b.a.a.b #24	ENSGT00390000001901 #25	ENSGT00390000007992 #26	ENSGT00940000161711 #27	ENSGT00940000161151 #28	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35	ENSGT00950000182832.C #36
Mus_B	ANCESTRAL SPECIES	15	ENSGT01030000234543.A.a #8	ENSGT00940000161705 #7	ENSGT00390000018097.j #9	ENSGT00940000156351 #10	ENSGT00940000154761 #11	ENSGT00940000163007	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.g #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371	ENSGT00940000160552	ENSGT01030000234578.A.b.a.a.b #24	ENSGT00390000001901 #25	ENSGT00390000007992 #26	ENSGT00940000161711 #27	ENSGT00940000161151 #28	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35	ENSGT00950000182832.C #36
Mouse	MODERN SPECIES	15	Ctnna2 (ENSMUSG00000063063) #8	Gm9008 (ENSMUSG00000072476)	Jkampl (ENSMUSG00000056197) #9	Suclg1 (ENSMUSG00000052738) #10	Dnah6 (ENSMUSG00000052861) #11	Tmsb10 (ENSMUSG00000079523) #12	Kcmf1 (ENSMUSG00000055239) #13	Tcf7l1 (ENSMUSG00000055799) #14	Tgoln1 (ENSMUSG00000056429) #15	Retsat (ENSMUSG00000056666) #16	Elmod3 (ENSMUSG00000056698) #17	Capg (ENSMUSG00000056737) #18	Sh2d6 (ENSMUSG00000052631) #19	Mat2a (ENSMUSG00000053907) #20	Ggcx (ENSMUSG00000053460) #21	Vamp8 (ENSMUSG00000050732) #22	Vamp5 (ENSMUSG00000073002)	Rnf181 (ENSMUSG00000055850) #23	Tmem150a (ENSMUSG00000055912) #24	0610030E20Rik (ENSMUSG00000058706) #25	Usp39 (ENSMUSG00000056305) #26	Sftpb (ENSMUSG00000056370) #27	Atoh8 (ENSMUSG00000037621) #28	St3gal5 (ENSMUSG00000056091) #29	Polr1a (ENSMUSG00000049553) #30	Ptcd3 (ENSMUSG00000063884) #31	Immt (ENSMUSG00000052337) #32	Mrpl35 (ENSMUSG00000052962) #33	Reep1 (ENSMUSG00000052852) #34	Kdm3a (ENSMUSG00000053470) #35	Chmp3 (ENSMUSG00000053119) #36
Mus_C	ANCESTRAL SPECIES	18	ENSGT01030000234543.A.a #8	ENSGT00940000161705 #7	ENSGT00390000018097.j #9	ENSGT00940000156351 #10	ENSGT00940000154761 #11	ENSGT00940000163007	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.g #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371	ENSGT00940000160552	ENSGT01030000234578.A.b.a.a.b #24	ENSGT00390000001901 #25	ENSGT00390000007992 #26	ENSGT00940000161711 #27	ENSGT00940000161151 #28	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35	ENSGT00950000182832.C #36
spretus	MODERN SPECIES	15	Lrrtm1 (MGP_SPRETEiJ_G0029523) #7	Ctnna2 (MGP_SPRETEiJ_G0029522) #8	Jkampl (MGP_SPRETEiJ_G0029521) #9	Suclg1 (MGP_SPRETEiJ_G0029520) #10	Dnah6 (MGP_SPRETEiJ_G0029519) #11	MGP_SPRETEiJ_G0029518 #12	Kcmf1 (MGP_SPRETEiJ_G0029517) #13	Tcf7l1 (MGP_SPRETEiJ_G0029516) #14	Tgoln1 (MGP_SPRETEiJ_G0029515) #15	Retsat (MGP_SPRETEiJ_G0029514) #16	Elmod3 (MGP_SPRETEiJ_G0029513) #17	Capg (MGP_SPRETEiJ_G0029512) #18	MGP_SPRETEiJ_G0029511 #19	Mat2a (MGP_SPRETEiJ_G0029510) #20	Ggcx (MGP_SPRETEiJ_G0029509) #21	Vamp8 (MGP_SPRETEiJ_G0029508) #22	Vamp5 (MGP_SPRETEiJ_G0029507)	Rnf181 (MGP_SPRETEiJ_G0029506) #23	Tmem150a (MGP_SPRETEiJ_G0029505) #24	0610030E20Rik (MGP_SPRETEiJ_G0029504) #25	Usp39 (MGP_SPRETEiJ_G0029503) #26	Sftpb (MGP_SPRETEiJ_G0029502) #27	Atoh8 (MGP_SPRETEiJ_G0029501) #28	St3gal5 (MGP_SPRETEiJ_G0029500) #29	Polr1a (MGP_SPRETEiJ_G0029499) #30	Ptcd3 (MGP_SPRETEiJ_G0029498) #31	Immt (MGP_SPRETEiJ_G0029497) #32	Mrpl35 (MGP_SPRETEiJ_G0029496) #33	MGP_SPRETEiJ_G0029495 #34	Kdm3a (MGP_SPRETEiJ_G0029494) #35	Chmp3 (MGP_SPRETEiJ_G0029493) #36
Steppe mouse	MODERN SPECIES	3287	ENSMSIG00000006995	Suclg1 (ENSMSIG00000007008) #10	ENSMSIG00000007054	ENSMSIG00000007062	Dnah6 (ENSMSIG00000007091) #11	Tmsb10b (ENSMSIG00000007285)	Kcmf1 (ENSMSIG00000007304) #13	Tcf7l1 (ENSMSIG00000007365) #14	ENSMSIG00000007493 #15	Retsat (ENSMSIG00000007552) #16	Elmod3 (ENSMSIG00000007675) #17	Capg (ENSMSIG00000007704) #18	Sh2d6 (ENSMSIG00000007788) #19	Mat2a (ENSMSIG00000007887) #20	Ggcx (ENSMSIG00000007972) #21	Vamp8 (ENSMSIG00000008076) #22	ENSMSIG00000008096	ENSMSIG00000008118	Tmem150a (ENSMSIG00000008166) #24	0610030E20Rik (ENSMSIG00000008200) #25	Usp39 (ENSMSIG00000008226) #26	Sftpb (ENSMSIG00000008238) #27	Atoh8 (ENSMSIG00000008291) #28	St3gal5 (ENSMSIG00000008306) #29	ENSMSIG00000008349	Polr1a (ENSMSIG00000008358) #30	Ptcd3 (ENSMSIG00000008420) #31	Immt (ENSMSIG00000008522) #32	Mrpl35 (ENSMSIG00000009352) #33	Reep1 (ENSMSIG00000009384) #34	Kdm3a (ENSMSIG00000009485) #35
Ryukyu mouse	MODERN SPECIES	15	Lrrtm1 (MGP_CAROLIEiJ_G0028518) #7	Ctnna2 (MGP_CAROLIEiJ_G0028517) #8	Jkampl (MGP_CAROLIEiJ_G0028516) #9	Suclg1 (MGP_CAROLIEiJ_G0028515) #10	Dnah6 (MGP_CAROLIEiJ_G0028514) #11	Tmsb10 (MGP_CAROLIEiJ_G0028513) #12	Kcmf1 (MGP_CAROLIEiJ_G0028512) #13	Tcf7l1 (MGP_CAROLIEiJ_G0028511) #14	Tgoln1 (MGP_CAROLIEiJ_G0028510) #15	Retsat (MGP_CAROLIEiJ_G0028509) #16	Elmod3 (MGP_CAROLIEiJ_G0028508) #17	Capg (MGP_CAROLIEiJ_G0028507) #18	Sh2d6 (MGP_CAROLIEiJ_G0028506) #19	Mat2a (MGP_CAROLIEiJ_G0028505) #20	Ggcx (MGP_CAROLIEiJ_G0028504) #21	Vamp8 (MGP_CAROLIEiJ_G0028503) #22	Vamp5 (MGP_CAROLIEiJ_G0028502)	MGP_CAROLIEiJ_G0028501	Tmem150a (MGP_CAROLIEiJ_G0028500) #24	0610030E20Rik (MGP_CAROLIEiJ_G0028499) #25	Usp39 (MGP_CAROLIEiJ_G0028498) #26	Sftpb (MGP_CAROLIEiJ_G0028497) #27	Atoh8 (MGP_CAROLIEiJ_G0028496) #28	St3gal5 (MGP_CAROLIEiJ_G0028495) #29	Polr1a (MGP_CAROLIEiJ_G0028494) #30	Ptcd3 (MGP_CAROLIEiJ_G0028493) #31	Immt (MGP_CAROLIEiJ_G0028492) #32	Mrpl35 (MGP_CAROLIEiJ_G0028491) #33	MGP_CAROLIEiJ_G0028490 #34	Kdm3a (MGP_CAROLIEiJ_G0028489) #35	Chmp3 (MGP_CAROLIEiJ_G0028488) #36