Murinae	ANCESTRAL SPECIES	4	ENSGT00940000161705 #7	ENSGT00390000018097.j #9	ENSGT00940000156351 #10	ENSGT00940000154761 #11	ENSGT00940000165681 #12	ENSGT00940000163007	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #31	ENSGT00390000016876 #32	ENSGT00390000002313 #33	ENSGT00390000007547 #34	ENSGT00940000159532 #35	ENSGT00940000160135 #36	ENSGT00950000182832.C #37
Mus	ANCESTRAL SPECIES	12	ENSGT00940000161705 #7	ENSGT00390000018097.j #9	ENSGT00940000156351 #10	ENSGT00940000154761 #11	ENSGT00940000165681 #12	ENSGT00940000163007	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #31	ENSGT00390000016876 #32	ENSGT00390000002313 #33	ENSGT00390000007547 #34	ENSGT00940000159532 #35	ENSGT00940000160135 #36	ENSGT00950000182832.C #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000161705 #7	ENSGT00390000018097.j #9	ENSGT00940000156351 #10	ENSGT00940000154761 #11	ENSGT00940000165681 #12	ENSGT00940000163007	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.g #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #31	ENSGT00390000016876 #32	ENSGT00390000002313 #33	ENSGT00390000007547 #34	ENSGT00940000159532 #35	ENSGT00940000160135 #36	ENSGT00950000182832.C #37
Ryukyu mouse	MODERN SPECIES	15	Lrrtm1 (MGP_CAROLIEiJ_G0028518) #7	Ctnna2 (MGP_CAROLIEiJ_G0028517) #8	Jkampl (MGP_CAROLIEiJ_G0028516) #9	Suclg1 (MGP_CAROLIEiJ_G0028515) #10	Dnah6 (MGP_CAROLIEiJ_G0028514) #11	Tmsb10 (MGP_CAROLIEiJ_G0028513) #12	Kcmf1 (MGP_CAROLIEiJ_G0028512) #13	Tcf7l1 (MGP_CAROLIEiJ_G0028511) #14	Tgoln1 (MGP_CAROLIEiJ_G0028510) #15	Retsat (MGP_CAROLIEiJ_G0028509) #16	Elmod3 (MGP_CAROLIEiJ_G0028508) #17	Capg (MGP_CAROLIEiJ_G0028507) #18	Sh2d6 (MGP_CAROLIEiJ_G0028506) #19	Mat2a (MGP_CAROLIEiJ_G0028505) #20	Ggcx (MGP_CAROLIEiJ_G0028504) #21	Vamp8 (MGP_CAROLIEiJ_G0028503) #22	Vamp5 (MGP_CAROLIEiJ_G0028502) #23	MGP_CAROLIEiJ_G0028501 #24	Tmem150a (MGP_CAROLIEiJ_G0028500) #25	0610030E20Rik (MGP_CAROLIEiJ_G0028499) #26	Usp39 (MGP_CAROLIEiJ_G0028498) #27	Sftpb (MGP_CAROLIEiJ_G0028497) #28	Atoh8 (MGP_CAROLIEiJ_G0028496) #29	St3gal5 (MGP_CAROLIEiJ_G0028495) #30	Polr1a (MGP_CAROLIEiJ_G0028494) #31	Ptcd3 (MGP_CAROLIEiJ_G0028493) #32	Immt (MGP_CAROLIEiJ_G0028492) #33	Mrpl35 (MGP_CAROLIEiJ_G0028491) #34	MGP_CAROLIEiJ_G0028490 #35	Kdm3a (MGP_CAROLIEiJ_G0028489) #36	Chmp3 (MGP_CAROLIEiJ_G0028488) #37
Mus_B	ANCESTRAL SPECIES	15	ENSGT01030000234543.A.a #8	ENSGT00940000161705 #7	ENSGT00390000018097.j #9	ENSGT00940000156351 #10	ENSGT00940000154761 #11	ENSGT00940000163007	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.g #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #31	ENSGT00390000016876 #32	ENSGT00390000002313 #33	ENSGT00390000007547 #34	ENSGT00940000159532 #35	ENSGT00940000160135 #36	ENSGT00950000182832.C #37
Mouse	MODERN SPECIES	15	Ctnna2 (ENSMUSG00000063063) #8	Gm9008 (ENSMUSG00000072476)	Jkampl (ENSMUSG00000056197) #9	Suclg1 (ENSMUSG00000052738) #10	Dnah6 (ENSMUSG00000052861) #11	Tmsb10 (ENSMUSG00000079523) #12	Kcmf1 (ENSMUSG00000055239) #13	Tcf7l1 (ENSMUSG00000055799) #14	Tgoln1 (ENSMUSG00000056429) #15	Retsat (ENSMUSG00000056666) #16	Elmod3 (ENSMUSG00000056698) #17	Capg (ENSMUSG00000056737) #18	Sh2d6 (ENSMUSG00000052631) #19	Mat2a (ENSMUSG00000053907) #20	Ggcx (ENSMUSG00000053460) #21	Vamp8 (ENSMUSG00000050732) #22	Vamp5 (ENSMUSG00000073002) #23	Rnf181 (ENSMUSG00000055850)	Tmem150a (ENSMUSG00000055912) #25	0610030E20Rik (ENSMUSG00000058706) #26	Usp39 (ENSMUSG00000056305) #27	Sftpb (ENSMUSG00000056370) #28	Atoh8 (ENSMUSG00000037621) #29	St3gal5 (ENSMUSG00000056091) #30	Polr1a (ENSMUSG00000049553) #31	Ptcd3 (ENSMUSG00000063884) #32	Immt (ENSMUSG00000052337) #33	Mrpl35 (ENSMUSG00000052962) #34	Reep1 (ENSMUSG00000052852) #35	Kdm3a (ENSMUSG00000053470) #36	Chmp3 (ENSMUSG00000053119) #37
Mus_C	ANCESTRAL SPECIES	18	ENSGT01030000234543.A.a #8	ENSGT00940000161705 #7	ENSGT00390000018097.j #9	ENSGT00940000156351 #10	ENSGT00940000154761 #11	ENSGT00940000163007	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.g #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #31	ENSGT00390000016876 #32	ENSGT00390000002313 #33	ENSGT00390000007547 #34	ENSGT00940000159532 #35	ENSGT00940000160135 #36	ENSGT00950000182832.C #37
spretus	MODERN SPECIES	15	Lrrtm1 (MGP_SPRETEiJ_G0029523) #7	Ctnna2 (MGP_SPRETEiJ_G0029522) #8	Jkampl (MGP_SPRETEiJ_G0029521) #9	Suclg1 (MGP_SPRETEiJ_G0029520) #10	Dnah6 (MGP_SPRETEiJ_G0029519) #11	MGP_SPRETEiJ_G0029518 #12	Kcmf1 (MGP_SPRETEiJ_G0029517) #13	Tcf7l1 (MGP_SPRETEiJ_G0029516) #14	Tgoln1 (MGP_SPRETEiJ_G0029515) #15	Retsat (MGP_SPRETEiJ_G0029514) #16	Elmod3 (MGP_SPRETEiJ_G0029513) #17	Capg (MGP_SPRETEiJ_G0029512) #18	MGP_SPRETEiJ_G0029511 #19	Mat2a (MGP_SPRETEiJ_G0029510) #20	Ggcx (MGP_SPRETEiJ_G0029509) #21	Vamp8 (MGP_SPRETEiJ_G0029508) #22	Vamp5 (MGP_SPRETEiJ_G0029507) #23	Rnf181 (MGP_SPRETEiJ_G0029506)	Tmem150a (MGP_SPRETEiJ_G0029505) #25	0610030E20Rik (MGP_SPRETEiJ_G0029504) #26	Usp39 (MGP_SPRETEiJ_G0029503) #27	Sftpb (MGP_SPRETEiJ_G0029502) #28	Atoh8 (MGP_SPRETEiJ_G0029501) #29	St3gal5 (MGP_SPRETEiJ_G0029500) #30	Polr1a (MGP_SPRETEiJ_G0029499) #31	Ptcd3 (MGP_SPRETEiJ_G0029498) #32	Immt (MGP_SPRETEiJ_G0029497) #33	Mrpl35 (MGP_SPRETEiJ_G0029496) #34	MGP_SPRETEiJ_G0029495 #35	Kdm3a (MGP_SPRETEiJ_G0029494) #36	Chmp3 (MGP_SPRETEiJ_G0029493) #37
Steppe mouse	MODERN SPECIES	3287	ENSMSIG00000006995	Suclg1 (ENSMSIG00000007008) #10	ENSMSIG00000007054	ENSMSIG00000007062	Dnah6 (ENSMSIG00000007091) #11	Tmsb10b (ENSMSIG00000007285)	Kcmf1 (ENSMSIG00000007304) #13	Tcf7l1 (ENSMSIG00000007365) #14	ENSMSIG00000007493 #15	Retsat (ENSMSIG00000007552) #16	Elmod3 (ENSMSIG00000007675) #17	Capg (ENSMSIG00000007704) #18	Sh2d6 (ENSMSIG00000007788) #19	Mat2a (ENSMSIG00000007887) #20	Ggcx (ENSMSIG00000007972) #21	Vamp8 (ENSMSIG00000008076) #22	ENSMSIG00000008096 #23	ENSMSIG00000008118 #24	Tmem150a (ENSMSIG00000008166) #25	0610030E20Rik (ENSMSIG00000008200) #26	Usp39 (ENSMSIG00000008226) #27	Sftpb (ENSMSIG00000008238) #28	Atoh8 (ENSMSIG00000008291) #29	St3gal5 (ENSMSIG00000008306) #30	ENSMSIG00000008349	Polr1a (ENSMSIG00000008358) #31	Ptcd3 (ENSMSIG00000008420) #32	Immt (ENSMSIG00000008522) #33	Mrpl35 (ENSMSIG00000009352) #34	Reep1 (ENSMSIG00000009384) #35	Kdm3a (ENSMSIG00000009485) #36
Shrew mouse	MODERN SPECIES	11	Lrrtm1 (MGP_PahariEiJ_G0022253) #7	Ctnna2 (MGP_PahariEiJ_G0022252) #8	Jkampl (MGP_PahariEiJ_G0022251) #9	Suclg1 (MGP_PahariEiJ_G0022250) #10	Dnah6 (MGP_PahariEiJ_G0022249) #11	Tmsb10 (MGP_PahariEiJ_G0022248) #12	Kcmf1 (MGP_PahariEiJ_G0022247) #13	Tcf7l1 (MGP_PahariEiJ_G0022246) #14	MGP_PahariEiJ_G0022245 #15	Retsat (MGP_PahariEiJ_G0022244) #16	Elmod3 (MGP_PahariEiJ_G0022243) #17	Capg (MGP_PahariEiJ_G0022242) #18	Sh2d6 (MGP_PahariEiJ_G0022241) #19	Mat2a (MGP_PahariEiJ_G0022240) #20	Ggcx (MGP_PahariEiJ_G0022239) #21	Vamp8 (MGP_PahariEiJ_G0022238) #22	Rnf181 (MGP_PahariEiJ_G0022237)	Tmem150a (MGP_PahariEiJ_G0022236) #25	0610030E20Rik (MGP_PahariEiJ_G0022235) #26	Usp39 (MGP_PahariEiJ_G0022234) #27	Sftpb (MGP_PahariEiJ_G0022233) #28	Atoh8 (MGP_PahariEiJ_G0022232) #29	St3gal5 (MGP_PahariEiJ_G0022231) #30	Polr1a (MGP_PahariEiJ_G0022230) #31	Ptcd3 (MGP_PahariEiJ_G0022229) #32	Immt (MGP_PahariEiJ_G0022228) #33	Mrpl35 (MGP_PahariEiJ_G0022227) #34	MGP_PahariEiJ_G0022226 #35	Kdm3a (MGP_PahariEiJ_G0022225) #36	Chmp3 (MGP_PahariEiJ_G0022224) #37	Rnf103 (MGP_PahariEiJ_G0022223)
Rat	MODERN SPECIES	14	ENSRNOG00000071146	Ptbp1-ps3 (ENSRNOG00000070516)	Jkampl (ENSRNOG00000024604) #9	Suclg1 (ENSRNOG00000005587) #10	Dnah6 (ENSRNOG00000015581) #11	Tmsb10 (ENSRNOG00000064090) #12	Kcmf1 (ENSRNOG00000015097) #13	Tcf7l1 (ENSRNOG00000014753) #14	Tgoln2 (ENSRNOG00000014617) #15	Retsat (ENSRNOG00000014090) #16	Elmod3 (ENSRNOG00000038102) #17	Capg (ENSRNOG00000013668) #18	Sh2d6 (ENSRNOG00000013605) #19	Mat2a (ENSRNOG00000013520) #20	Ggcx (ENSRNOG00000012975) #21	Vamp8 (ENSRNOG00000012748) #22	Vamp5 (ENSRNOG00000012659) #23	Rnf181 (ENSRNOG00000012035) #24	Tmem150a (ENSRNOG00000061100) #25	LOC691113 (ENSRNOG00000011713) #26	Usp39 (ENSRNOG00000010930) #27	Sftpb (ENSRNOG00000010761) #28	Atoh8 (ENSRNOG00000010716) #29	ENSRNOG00000065207	St3gal5 (ENSRNOG00000010284) #30	Polr1a (ENSRNOG00000009545) #31	Ptcd3 (ENSRNOG00000009484) #32	Immt (ENSRNOG00000009097) #33	Mrpl35 (ENSRNOG00000008546) #34	Reep1 (ENSRNOG00000008481) #35	Kdm3a (ENSRNOG00000007814) #36