Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Glires	ANCESTRAL SPECIES	13	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Rodentia	ANCESTRAL SPECIES	15	ENSGT00940000154447.y.a	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00940000162300	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Myomorpha	ANCESTRAL SPECIES	37	ENSGT00940000154447.y.a.b	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Muroidea	ANCESTRAL SPECIES	38	ENSGT00940000154447.y.a.b	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j #8	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Cricetidae	ANCESTRAL SPECIES	3	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j #8	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909.g #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j #8	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909.g #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Northern American deer mouse	MODERN SPECIES	16	ENSPEMG00000029513 #7	Jkampl (ENSPEMG00000024694) #8	Suclg1 (ENSPEMG00000010810) #9	Dnah6 (ENSPEMG00000023939) #10	ENSPEMG00000030958 #11	ENSPEMG00000026592 #12	Kcmf1 (ENSPEMG00000029405) #13	Tcf7l1 (ENSPEMG00000004714) #14	Tgoln1 (ENSPEMG00000007145) #15	Retsat (ENSPEMG00000011191) #16	Elmod3 (ENSPEMG00000010510) #17	Capg (ENSPEMG00000018215) #18	Sh2d6 (ENSPEMG00000016371) #19	Mat2a (ENSPEMG00000015257) #20	Ggcx (ENSPEMG00000013327) #21	Vamp8 (ENSPEMG00000029313) #22	Vamp5 (ENSPEMG00000027040) #23	ENSPEMG00000010283 #24	Tmem150a (ENSPEMG00000018551) #25	0610030E20Rik (ENSPEMG00000025650) #26	Usp39 (ENSPEMG00000030030) #27	Sftpb (ENSPEMG00000013792) #28	Atoh8 (ENSPEMG00000014683) #29	St3gal5 (ENSPEMG00000022543) #30	ENSPEMG00000023889 #31	Polr1a (ENSPEMG00000022224) #32	Ptcd3 (ENSPEMG00000024106) #33	Immt (ENSPEMG00000009199) #34	Mrpl35 (ENSPEMG00000021175) #35	Reep1 (ENSPEMG00000021271) #36	Kdm3a (ENSPEMG00000020813) #37
Prairie vole	MODERN SPECIES	83	ENSMOCG00000004435	Suclg1 (ENSMOCG00000021421) #9	Dnah6 (ENSMOCG00000002417) #10	ENSMOCG00000012602 #11	Kcmf1 (ENSMOCG00000003279) #13	Tcf7l1 (ENSMOCG00000012953) #14	ENSMOCG00000000091 #15	Retsat (ENSMOCG00000021447) #16	ENSMOCG00000000675	ENSMOCG00000002524	Elmod3 (ENSMOCG00000015870) #17	Capg (ENSMOCG00000005806) #18	Sh2d6 (ENSMOCG00000015508) #19	ENSMOCG00000011611 #20	Ggcx (ENSMOCG00000017281) #21	Vamp8 (ENSMOCG00000004037) #22	Vamp5 (ENSMOCG00000014948) #23	ENSMOCG00000020563 #24	Tmem150a (ENSMOCG00000012440) #25	0610030E20Rik (ENSMOCG00000022948) #26	Usp39 (ENSMOCG00000014162) #27	Sftpb (ENSMOCG00000003084) #28	Atoh8 (ENSMOCG00000019812) #29	St3gal5 (ENSMOCG00000005961) #30	Polr1a (ENSMOCG00000000122) #32	Ptcd3 (ENSMOCG00000019181) #33	Immt (ENSMOCG00000000827) #34	Mrpl35 (ENSMOCG00000008652) #35	Reep1 (ENSMOCG00000013750) #36	Kdm3a (ENSMOCG00000011851) #37	Chmp3 (ENSMOCG00000022847)
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00940000154447.y.a.b	ENSGT01030000234543.A.a	ENSGT00390000018097.j #8	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909.g #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Chinese hamster chok1gshd	MODERN SPECIES	242	Ctnna2 (ENSCGRG00001000241)	Jkampl (ENSCGRG00001016234) #8	Suclg1 (ENSCGRG00001007965) #9	Dnah6 (ENSCGRG00001001087) #10	ENSCGRG00001017576	Tmsb10b (ENSCGRG00001017927) #11	Kcmf1 (ENSCGRG00001018737) #13	Tcf7l1 (ENSCGRG00001021396) #14	ENSCGRG00001022789 #15	Retsat (ENSCGRG00001023894) #16	Elmod3 (ENSCGRG00001000477) #17	Capg (ENSCGRG00001001836) #18	Sh2d6 (ENSCGRG00001007691) #19	Mat2a (ENSCGRG00001010053) #20	Ggcx (ENSCGRG00001012860) #21	Vamp8 (ENSCGRG00001014727) #22	Vamp5 (ENSCGRG00001015261) #23	Tmem150a (ENSCGRG00001016577) #25	Rnf181 (ENSCGRG00001017863)	0610030E20Rik (ENSCGRG00001019313) #26	Usp39 (ENSCGRG00001019807) #27	Sftpb (ENSCGRG00001020533) #28	Atoh8 (ENSCGRG00001000824) #29	St3gal5 (ENSCGRG00001002527) #30	ENSCGRG00001015637	Polr1a (ENSCGRG00001006651) #32	Ptcd3 (ENSCGRG00001010361) #33	Immt (ENSCGRG00001013917) #34	Mrpl35 (ENSCGRG00001016701) #35	Reep1 (ENSCGRG00001018917) #36	Kdm3a (ENSCGRG00001020421) #37
Golden Hamster	MODERN SPECIES	675													Sh2d6 (ENSMAUG00000000137) #19	Mat2a (ENSMAUG00000010463) #20	Ggcx (ENSMAUG00000014325) #21	Vamp8 (ENSMAUG00000018469) #22	Vamp5 (ENSMAUG00000010363) #23	ENSMAUG00000015068 #24	Tmem150a (ENSMAUG00000012394) #25	0610030E20Rik (ENSMAUG00000011957) #26	Usp39 (ENSMAUG00000009400) #27	Sftpb (ENSMAUG00000008956) #28	Atoh8 (ENSMAUG00000008236) #29	St3gal5 (ENSMAUG00000012326) #30	Polr1a (ENSMAUG00000008497) #32	Ptcd3 (ENSMAUG00000000145) #33	Immt (ENSMAUG00000011453) #34	Mrpl35 (ENSMAUG00000009361) #35	Reep1 (ENSMAUG00000013117) #36	Kdm3a (ENSMAUG00000006230) #37	Chmp3 (ENSMAUG00000009081)
Murinae	ANCESTRAL SPECIES	4	ENSGT00940000161705	ENSGT00390000018097.j #8	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000165681	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Mus	ANCESTRAL SPECIES	12	ENSGT00940000161705	ENSGT00390000018097.j #8	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000165681	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000161705	ENSGT00390000018097.j #8	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000165681	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.g #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Mus_B	ANCESTRAL SPECIES	15	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j #8	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.g #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Mouse	MODERN SPECIES	15	Ctnna2 (ENSMUSG00000063063)	Gm9008 (ENSMUSG00000072476)	Jkampl (ENSMUSG00000056197) #8	Suclg1 (ENSMUSG00000052738) #9	Dnah6 (ENSMUSG00000052861) #10	Tmsb10 (ENSMUSG00000079523)	Kcmf1 (ENSMUSG00000055239) #13	Tcf7l1 (ENSMUSG00000055799) #14	Tgoln1 (ENSMUSG00000056429) #15	Retsat (ENSMUSG00000056666) #16	Elmod3 (ENSMUSG00000056698) #17	Capg (ENSMUSG00000056737) #18	Sh2d6 (ENSMUSG00000052631) #19	Mat2a (ENSMUSG00000053907) #20	Ggcx (ENSMUSG00000053460) #21	Vamp8 (ENSMUSG00000050732) #22	Vamp5 (ENSMUSG00000073002) #23	Rnf181 (ENSMUSG00000055850)	Tmem150a (ENSMUSG00000055912) #25	0610030E20Rik (ENSMUSG00000058706) #26	Usp39 (ENSMUSG00000056305) #27	Sftpb (ENSMUSG00000056370) #28	Atoh8 (ENSMUSG00000037621) #29	St3gal5 (ENSMUSG00000056091) #30	Polr1a (ENSMUSG00000049553) #32	Ptcd3 (ENSMUSG00000063884) #33	Immt (ENSMUSG00000052337) #34	Mrpl35 (ENSMUSG00000052962) #35	Reep1 (ENSMUSG00000052852) #36	Kdm3a (ENSMUSG00000053470) #37	Chmp3 (ENSMUSG00000053119)
Mus_C	ANCESTRAL SPECIES	18	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j #8	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.g #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
spretus	MODERN SPECIES	15	Lrrtm1 (MGP_SPRETEiJ_G0029523)	Ctnna2 (MGP_SPRETEiJ_G0029522)	Jkampl (MGP_SPRETEiJ_G0029521) #8	Suclg1 (MGP_SPRETEiJ_G0029520) #9	Dnah6 (MGP_SPRETEiJ_G0029519) #10	MGP_SPRETEiJ_G0029518	Kcmf1 (MGP_SPRETEiJ_G0029517) #13	Tcf7l1 (MGP_SPRETEiJ_G0029516) #14	Tgoln1 (MGP_SPRETEiJ_G0029515) #15	Retsat (MGP_SPRETEiJ_G0029514) #16	Elmod3 (MGP_SPRETEiJ_G0029513) #17	Capg (MGP_SPRETEiJ_G0029512) #18	MGP_SPRETEiJ_G0029511 #19	Mat2a (MGP_SPRETEiJ_G0029510) #20	Ggcx (MGP_SPRETEiJ_G0029509) #21	Vamp8 (MGP_SPRETEiJ_G0029508) #22	Vamp5 (MGP_SPRETEiJ_G0029507) #23	Rnf181 (MGP_SPRETEiJ_G0029506)	Tmem150a (MGP_SPRETEiJ_G0029505) #25	0610030E20Rik (MGP_SPRETEiJ_G0029504) #26	Usp39 (MGP_SPRETEiJ_G0029503) #27	Sftpb (MGP_SPRETEiJ_G0029502) #28	Atoh8 (MGP_SPRETEiJ_G0029501) #29	St3gal5 (MGP_SPRETEiJ_G0029500) #30	Polr1a (MGP_SPRETEiJ_G0029499) #32	Ptcd3 (MGP_SPRETEiJ_G0029498) #33	Immt (MGP_SPRETEiJ_G0029497) #34	Mrpl35 (MGP_SPRETEiJ_G0029496) #35	MGP_SPRETEiJ_G0029495 #36	Kdm3a (MGP_SPRETEiJ_G0029494) #37	Chmp3 (MGP_SPRETEiJ_G0029493)
Steppe mouse	MODERN SPECIES	3287	ENSMSIG00000006995	Suclg1 (ENSMSIG00000007008) #9	ENSMSIG00000007054	ENSMSIG00000007062	Dnah6 (ENSMSIG00000007091) #10	Tmsb10b (ENSMSIG00000007285) #11	Kcmf1 (ENSMSIG00000007304) #13	Tcf7l1 (ENSMSIG00000007365) #14	ENSMSIG00000007493 #15	Retsat (ENSMSIG00000007552) #16	Elmod3 (ENSMSIG00000007675) #17	Capg (ENSMSIG00000007704) #18	Sh2d6 (ENSMSIG00000007788) #19	Mat2a (ENSMSIG00000007887) #20	Ggcx (ENSMSIG00000007972) #21	Vamp8 (ENSMSIG00000008076) #22	ENSMSIG00000008096 #23	ENSMSIG00000008118 #24	Tmem150a (ENSMSIG00000008166) #25	0610030E20Rik (ENSMSIG00000008200) #26	Usp39 (ENSMSIG00000008226) #27	Sftpb (ENSMSIG00000008238) #28	Atoh8 (ENSMSIG00000008291) #29	St3gal5 (ENSMSIG00000008306) #30	ENSMSIG00000008349	Polr1a (ENSMSIG00000008358) #32	Ptcd3 (ENSMSIG00000008420) #33	Immt (ENSMSIG00000008522) #34	Mrpl35 (ENSMSIG00000009352) #35	Reep1 (ENSMSIG00000009384) #36	Kdm3a (ENSMSIG00000009485) #37
Ryukyu mouse	MODERN SPECIES	15	Lrrtm1 (MGP_CAROLIEiJ_G0028518)	Ctnna2 (MGP_CAROLIEiJ_G0028517)	Jkampl (MGP_CAROLIEiJ_G0028516) #8	Suclg1 (MGP_CAROLIEiJ_G0028515) #9	Dnah6 (MGP_CAROLIEiJ_G0028514) #10	Tmsb10 (MGP_CAROLIEiJ_G0028513)	Kcmf1 (MGP_CAROLIEiJ_G0028512) #13	Tcf7l1 (MGP_CAROLIEiJ_G0028511) #14	Tgoln1 (MGP_CAROLIEiJ_G0028510) #15	Retsat (MGP_CAROLIEiJ_G0028509) #16	Elmod3 (MGP_CAROLIEiJ_G0028508) #17	Capg (MGP_CAROLIEiJ_G0028507) #18	Sh2d6 (MGP_CAROLIEiJ_G0028506) #19	Mat2a (MGP_CAROLIEiJ_G0028505) #20	Ggcx (MGP_CAROLIEiJ_G0028504) #21	Vamp8 (MGP_CAROLIEiJ_G0028503) #22	Vamp5 (MGP_CAROLIEiJ_G0028502) #23	MGP_CAROLIEiJ_G0028501 #24	Tmem150a (MGP_CAROLIEiJ_G0028500) #25	0610030E20Rik (MGP_CAROLIEiJ_G0028499) #26	Usp39 (MGP_CAROLIEiJ_G0028498) #27	Sftpb (MGP_CAROLIEiJ_G0028497) #28	Atoh8 (MGP_CAROLIEiJ_G0028496) #29	St3gal5 (MGP_CAROLIEiJ_G0028495) #30	Polr1a (MGP_CAROLIEiJ_G0028494) #32	Ptcd3 (MGP_CAROLIEiJ_G0028493) #33	Immt (MGP_CAROLIEiJ_G0028492) #34	Mrpl35 (MGP_CAROLIEiJ_G0028491) #35	MGP_CAROLIEiJ_G0028490 #36	Kdm3a (MGP_CAROLIEiJ_G0028489) #37	Chmp3 (MGP_CAROLIEiJ_G0028488)
Shrew mouse	MODERN SPECIES	11	Lrrtm1 (MGP_PahariEiJ_G0022253)	Ctnna2 (MGP_PahariEiJ_G0022252)	Jkampl (MGP_PahariEiJ_G0022251) #8	Suclg1 (MGP_PahariEiJ_G0022250) #9	Dnah6 (MGP_PahariEiJ_G0022249) #10	Tmsb10 (MGP_PahariEiJ_G0022248)	Kcmf1 (MGP_PahariEiJ_G0022247) #13	Tcf7l1 (MGP_PahariEiJ_G0022246) #14	MGP_PahariEiJ_G0022245 #15	Retsat (MGP_PahariEiJ_G0022244) #16	Elmod3 (MGP_PahariEiJ_G0022243) #17	Capg (MGP_PahariEiJ_G0022242) #18	Sh2d6 (MGP_PahariEiJ_G0022241) #19	Mat2a (MGP_PahariEiJ_G0022240) #20	Ggcx (MGP_PahariEiJ_G0022239) #21	Vamp8 (MGP_PahariEiJ_G0022238) #22	Rnf181 (MGP_PahariEiJ_G0022237)	Tmem150a (MGP_PahariEiJ_G0022236) #25	0610030E20Rik (MGP_PahariEiJ_G0022235) #26	Usp39 (MGP_PahariEiJ_G0022234) #27	Sftpb (MGP_PahariEiJ_G0022233) #28	Atoh8 (MGP_PahariEiJ_G0022232) #29	St3gal5 (MGP_PahariEiJ_G0022231) #30	Polr1a (MGP_PahariEiJ_G0022230) #32	Ptcd3 (MGP_PahariEiJ_G0022229) #33	Immt (MGP_PahariEiJ_G0022228) #34	Mrpl35 (MGP_PahariEiJ_G0022227) #35	MGP_PahariEiJ_G0022226 #36	Kdm3a (MGP_PahariEiJ_G0022225) #37	Chmp3 (MGP_PahariEiJ_G0022224)	Rnf103 (MGP_PahariEiJ_G0022223)
Rat	MODERN SPECIES	14	ENSRNOG00000071146	Ptbp1-ps3 (ENSRNOG00000070516)	Jkampl (ENSRNOG00000024604) #8	Suclg1 (ENSRNOG00000005587) #9	Dnah6 (ENSRNOG00000015581) #10	Tmsb10 (ENSRNOG00000064090)	Kcmf1 (ENSRNOG00000015097) #13	Tcf7l1 (ENSRNOG00000014753) #14	Tgoln2 (ENSRNOG00000014617) #15	Retsat (ENSRNOG00000014090) #16	Elmod3 (ENSRNOG00000038102) #17	Capg (ENSRNOG00000013668) #18	Sh2d6 (ENSRNOG00000013605) #19	Mat2a (ENSRNOG00000013520) #20	Ggcx (ENSRNOG00000012975) #21	Vamp8 (ENSRNOG00000012748) #22	Vamp5 (ENSRNOG00000012659) #23	Rnf181 (ENSRNOG00000012035) #24	Tmem150a (ENSRNOG00000061100) #25	LOC691113 (ENSRNOG00000011713) #26	Usp39 (ENSRNOG00000010930) #27	Sftpb (ENSRNOG00000010761) #28	Atoh8 (ENSRNOG00000010716) #29	ENSRNOG00000065207	St3gal5 (ENSRNOG00000010284) #30	Polr1a (ENSRNOG00000009545) #32	Ptcd3 (ENSRNOG00000009484) #33	Immt (ENSRNOG00000009097) #34	Mrpl35 (ENSRNOG00000008546) #35	Reep1 (ENSRNOG00000008481) #36	Kdm3a (ENSRNOG00000007814) #37
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1096	ENSNGAG00000009815	Jkampl (ENSNGAG00000013694) #8	ENSNGAG00000023092	Suclg1 (ENSNGAG00000015283) #9	ENSNGAG00000013792	Dnah6 (ENSNGAG00000013760) #10	Tmsb10b (ENSNGAG00000016585) #11	ENSNGAG00000017279 #13	Tcf7l1 (ENSNGAG00000020122) #14	Retsat (ENSNGAG00000007772) #16	Elmod3 (ENSNGAG00000017699) #17	Capg (ENSNGAG00000019315) #18	Sh2d6 (ENSNGAG00000000856) #19	Mat2a (ENSNGAG00000014289) #20	Ggcx (ENSNGAG00000000695) #21	ENSNGAG00000014911 #22	Vamp5 (ENSNGAG00000022303) #23	ENSNGAG00000010364 #24	Tmem150a (ENSNGAG00000000493) #25	0610030E20Rik (ENSNGAG00000012174) #26	Usp39 (ENSNGAG00000018760) #27	Sftpb (ENSNGAG00000020909) #28	Atoh8 (ENSNGAG00000017424) #29	ENSNGAG00000017959	St3gal5 (ENSNGAG00000020246) #30
Upper Galilee mountains blind mole rat	MODERN SPECIES	1224					Stab2 (ENSNGAG00000001493)	Nt5dc3 (ENSNGAG00000018361)	Hsp90b1 (ENSNGAG00000014447)	ENSNGAG00000013621	Tdg (ENSNGAG00000000667)	Glt8d2 (ENSNGAG00000002040)	Hcfc2 (ENSNGAG00000019076)	Nfyb (ENSNGAG00000017224)	Eid3 (ENSNGAG00000019100)	ENSNGAG00000019222	Chst11 (ENSNGAG00000017327)	ENSNGAG00000015399 #22	Slc41a2 (ENSNGAG00000013889)	Nopchap1 (ENSNGAG00000012316)	Aldh1l2 (ENSNGAG00000020174)	ENSNGAG00000019266	Washc4 (ENSNGAG00000015936)	ENSNGAG00000014686	1500009L16Rik (ENSNGAG00000013967)	Nuak1 (ENSNGAG00000011987)	Ckap4 (ENSNGAG00000015103)	Tcp11l2 (ENSNGAG00000012830)	Polr3b (ENSNGAG00000011308)	Rfx4 (ENSNGAG00000000351)	Ric8b (ENSNGAG00000018867)	Tmem263 (ENSNGAG00000015885)	Mterf2 (ENSNGAG00000000529)
Lesser Egyptian jerboa	MODERN SPECIES	77	Suclg1 (ENSJJAG00000023782) #9	ENSJJAG00000020479	Dnah6 (ENSJJAG00000013999) #10	ENSJJAG00000009987 #11	ENSJJAG00000006387	Kcmf1 (ENSJJAG00000020771) #13	ENSJJAG00000010136	Tcf7l1 (ENSJJAG00000023485) #14	ENSJJAG00000022764	Retsat (ENSJJAG00000018206) #16	Elmod3 (ENSJJAG00000015903) #17	Capg (ENSJJAG00000011988) #18	Sh2d6 (ENSJJAG00000011036) #19	Mat2a (ENSJJAG00000019942) #20	Ggcx (ENSJJAG00000013219) #21	Vamp8 (ENSJJAG00000023575) #22	Vamp5 (ENSJJAG00000021713) #23	ENSJJAG00000012435 #24	Tmem150a (ENSJJAG00000015485) #25	Sftpb (ENSJJAG00000020339) #28	Atoh8 (ENSJJAG00000003684) #29	St3gal5 (ENSJJAG00000012802) #30	Polr1a (ENSJJAG00000013113) #32	ENSJJAG00000012431 #33	Immt (ENSJJAG00000015348) #34	Reep1 (ENSJJAG00000021695) #36	Kdm3a (ENSJJAG00000022464) #37	ENSJJAG00000016934	ENSJJAG00000004517	Rnf103 (ENSJJAG00000013104)	ENSJJAG00000002281
Kangaroo rat	MODERN SPECIES	528					Suclg1 (ENSDORG00000010991) #9	Dnah6 (ENSDORG00000000400) #10	Tmsb10b (ENSDORG00000025129) #11	Kcmf1 (ENSDORG00000029229) #13	Tcf7l1 (ENSDORG00000013753) #14	Retsat (ENSDORG00000009720) #16	Elmod3 (ENSDORG00000009721) #17	Capg (ENSDORG00000009722) #18	Sh2d6 (ENSDORG00000013882) #19	Mat2a (ENSDORG00000011312) #20	Ggcx (ENSDORG00000006726) #21	Vamp8 (ENSDORG00000010738) #22	Vamp5 (ENSDORG00000027327) #23	ENSDORG00000010740 #24	Tmem150a (ENSDORG00000010742) #25	0610030E20Rik (ENSDORG00000030143) #26	Usp39 (ENSDORG00000010746) #27	Sftpb (ENSDORG00000010751) #28	Atoh8 (ENSDORG00000028892) #29	St3gal5 (ENSDORG00000008296) #30	Polr1a (ENSDORG00000008298) #32	Ptcd3 (ENSDORG00000008305) #33	ENSDORG00000001073 #34
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000154447.z	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171.n #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Sciuridae	ANCESTRAL SPECIES	53						ENSGT00940000163478	ENSGT00390000004352	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Marmotini	ANCESTRAL SPECIES	86					ENSGT00940000163478	ENSGT00390000004352	ENSGT00940000153165.a.a.c.a.i.b.b.b.a.a	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Alpin marmot	MODERN SPECIES	118	ENSMMMG00000007007	ENSMMMG00000007012	ENSMMMG00000007026	RPIA (ENSMMMG00000007477)	ENSMMMG00000007572	ENSMMMG00000007617	ENSMMMG00000007627	TCF7L1 (ENSMMMG00000007633) #14	ENSMMMG00000007682 #15	RETSAT (ENSMMMG00000007689) #16	ENSMMMG00000007785 #17	CAPG (ENSMMMG00000007822) #18	ENSMMMG00000007857 #19	MAT2A (ENSMMMG00000007871) #20	GGCX (ENSMMMG00000008142) #21	VAMP8 (ENSMMMG00000008162) #22	VAMP5 (ENSMMMG00000008168) #23	RNF181 (ENSMMMG00000008179) #24	TMEM150A (ENSMMMG00000008189) #25	USP39 (ENSMMMG00000008203) #27	ENSMMMG00000008853 #26	SFTPB (ENSMMMG00000008881) #28	ST3GAL5 (ENSMMMG00000008911) #30	POLR1A (ENSMMMG00000008920) #32	PTCD3 (ENSMMMG00000008977) #33	IMMT (ENSMMMG00000009011) #34	MRPL35 (ENSMMMG00000009181) #35	REEP1 (ENSMMMG00000009193) #36	KDM3A (ENSMMMG00000009242) #37	CHMP3 (ENSMMMG00000009359)	RNF103 (ENSMMMG00000009373)
Marmotini_b	ANCESTRAL SPECIES	128					ENSGT00940000163478	ENSGT00390000004352	ENSGT00940000153165.a.a.c.a.i.b.b.b.a.a	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000154129.m.r.b	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Squirrel	MODERN SPECIES	312					RPIA (ENSSTOG00000023312)	ENSSTOG00000034297	ENSSTOG00000031036	TCF7L1 (ENSSTOG00000021988) #14	ENSSTOG00000020177 #15	RETSAT (ENSSTOG00000026131) #16	ELMOD3 (ENSSTOG00000009420) #17	CAPG (ENSSTOG00000009431) #18	ENSSTOG00000010788 #19	MAT2A (ENSSTOG00000010796) #20	GGCX (ENSSTOG00000010797) #21	VAMP8 (ENSSTOG00000005962) #22	VAMP5 (ENSSTOG00000005966) #23	RNF181 (ENSSTOG00000005973) #24	TMEM150A (ENSSTOG00000023355) #25	C2orf68 (ENSSTOG00000032886) #26	USP39 (ENSSTOG00000015986) #27	SFTPB (ENSSTOG00000026197) #28	ENSSTOG00000033478	ATOH8 (ENSSTOG00000006538) #29	ST3GAL5 (ENSSTOG00000024816) #30	ENSSTOG00000012609	POLR1A (ENSSTOG00000012580) #32	PTCD3 (ENSSTOG00000012611) #33	IMMT (ENSSTOG00000012624) #34	MRPL35 (ENSSTOG00000030233) #35	REEP1 (ENSSTOG00000025141) #36
Arctic ground squirrel	MODERN SPECIES	609					IGKC (ENSUPAG00010018047)	RPIA (ENSUPAG00010018051)	ENSUPAG00010018060	TCF7L1 (ENSUPAG00010018088) #14	ENSUPAG00010018102 #15	RETSAT (ENSUPAG00010018105) #16	ELMOD3 (ENSUPAG00010018158) #17	CAPG (ENSUPAG00010018187) #18	SH2D6 (ENSUPAG00010018214) #19	MAT2A (ENSUPAG00010000075) #20	GGCX (ENSUPAG00010000144) #21	VAMP8 (ENSUPAG00010000178) #22	ENSUPAG00010000192 #23	TMEM150A (ENSUPAG00010000226) #25	RNF181 (ENSUPAG00010000242) #24	ENSUPAG00010000260 #26	USP39 (ENSUPAG00010000286) #27	SFTPB (ENSUPAG00010000319) #28	ENSUPAG00010000360
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005019338	ENSSVLG00005019271	ENSSVLG00005018002	ENSSVLG00005017863	ENSSVLG00005017786	TCF7L1 (ENSSVLG00005017741) #14	ENSSVLG00005017693 #15	RETSAT (ENSSVLG00005017559) #16	ELMOD3 (ENSSVLG00005017414) #17	CAPG (ENSSVLG00005017210) #18	ENSSVLG00005017177	SH2D6 (ENSSVLG00005016979) #19	MAT2A (ENSSVLG00005016926) #20	ENSSVLG00005016868	GGCX (ENSSVLG00005016698) #21	VAMP8 (ENSSVLG00005016627) #22	VAMP5 (ENSSVLG00005016585) #23	RNF181 (ENSSVLG00005016555) #24	TMEM150A (ENSSVLG00005016477) #25	ENSSVLG00005016431 #26	USP39 (ENSSVLG00005016257) #27	SFTPB (ENSSVLG00005015980) #28	ATOH8 (ENSSVLG00005015922) #29	ST3GAL5 (ENSSVLG00005015795) #30	POLR1A (ENSSVLG00005015696) #32	PTCD3 (ENSSVLG00005016912) #33	IMMT (ENSSVLG00005016785) #34	MRPL35 (ENSSVLG00005016713) #35	REEP1 (ENSSVLG00005016418) #36	KDM3A (ENSSVLG00005016348) #37	CHMP3 (ENSSVLG00005016280)
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00940000154447.z.f	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171.n #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Hystricomorpha_a	ANCESTRAL SPECIES	35	ENSGT00940000154447.z.f	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171.n #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Hystricomorpha_b	ANCESTRAL SPECIES	33	ENSGT00940000154447.z.e.a	ENSGT00940000154447.z.f	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171.n #13	ENSGT00940000157038 #14	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Long-tailed chinchilla	MODERN SPECIES	131	ENSCLAG00000005858	LRRTM1 (ENSCLAG00000005364)	CTNNA2 (ENSCLAG00000013755)	ENSCLAG00000009325	SUCLG1 (ENSCLAG00000008580) #9	DNAH6 (ENSCLAG00000006035) #10	TMSB10 (ENSCLAG00000010365) #11	KCMF1 (ENSCLAG00000009986) #13	TCF7L1 (ENSCLAG00000007414) #14	RETSAT (ENSCLAG00000008939) #16	ELMOD3 (ENSCLAG00000009003) #17	CAPG (ENSCLAG00000004481) #18	ENSCLAG00000006141 #19	MAT2A (ENSCLAG00000007205) #20	GGCX (ENSCLAG00000005838) #21	VAMP8 (ENSCLAG00000008880) #22	VAMP5 (ENSCLAG00000009915) #23	RNF181 (ENSCLAG00000006082) #24	TMEM150A (ENSCLAG00000005500) #25	C2orf68 (ENSCLAG00000009438) #26	USP39 (ENSCLAG00000006866) #27	SFTPB (ENSCLAG00000006471) #28	ATOH8 (ENSCLAG00000006142) #29	ST3GAL5 (ENSCLAG00000006950) #30	POLR1A (ENSCLAG00000005187) #32	PTCD3 (ENSCLAG00000007992) #33	IMMT (ENSCLAG00000005278) #34	MRPL35 (ENSCLAG00000004489) #35	REEP1 (ENSCLAG00000012499) #36	KDM3A (ENSCLAG00000011990) #37	CHMP3 (ENSCLAG00000009289)
Degu	MODERN SPECIES	203		ENSODEG00000002222	ENSODEG00000002212	SUCLG1 (ENSODEG00000002195) #9	DNAH6 (ENSODEG00000003756) #10	ENSODEG00000003596 #11	ENSODEG00000003586 #13	TCF7L1 (ENSODEG00000003559) #14	RETSAT (ENSODEG00000003469) #16	ELMOD3 (ENSODEG00000003393) #17	CAPG (ENSODEG00000003321) #18	ENSODEG00000018929	SH2D6 (ENSODEG00000003239) #19	ENSODEG00000003186 #20	GGCX (ENSODEG00000003141) #21	VAMP8 (ENSODEG00000003107) #22	VAMP5 (ENSODEG00000003093) #23	RNF181 (ENSODEG00000003046) #24	TMEM150A (ENSODEG00000003753) #25	C2orf68 (ENSODEG00000003734) #26	USP39 (ENSODEG00000003717) #27	SFTPB (ENSODEG00000003695) #28	ATOH8 (ENSODEG00000003670) #29	ST3GAL5 (ENSODEG00000003647) #30	ENSODEG00000018941	POLR1A (ENSODEG00000003542) #32	PTCD3 (ENSODEG00000003461) #33	IMMT (ENSODEG00000003274) #34	MRPL35 (ENSODEG00000003180) #35	REEP1 (ENSODEG00000003133) #36	KDM3A (ENSODEG00000003061) #37
Guinea pig	MODERN SPECIES	37	ENSCPOG00000004885	ENSCPOG00000032214	LRRTM1 (ENSCPOG00000001371)	CTNNA2 (ENSCPOG00000023564)	SUCLG1 (ENSCPOG00000003017) #9	DNAH6 (ENSCPOG00000015041) #10	KCMF1 (ENSCPOG00000023050) #13	TCF7L1 (ENSCPOG00000014492) #14	ENSCPOG00000037555 #15	RETSAT (ENSCPOG00000022640) #16	ELMOD3 (ENSCPOG00000007973) #17	CAPG (ENSCPOG00000007978) #18	ENSCPOG00000012229 #19	MAT2A (ENSCPOG00000001533) #20	GGCX (ENSCPOG00000001534) #21	VAMP8 (ENSCPOG00000001409) #22	VAMP5 (ENSCPOG00000021802) #23	RNF181 (ENSCPOG00000001938) #24	TMEM150A (ENSCPOG00000025516) #25	C2orf68 (ENSCPOG00000009311) #26	USP39 (ENSCPOG00000009315) #27	SFTPB (ENSCPOG00000035291) #28	ATOH8 (ENSCPOG00000006364) #29	ST3GAL5 (ENSCPOG00000000993) #30	POLR1A (ENSCPOG00000012350) #32	PTCD3 (ENSCPOG00000012371) #33	IMMT (ENSCPOG00000012379) #34	MRPL35 (ENSCPOG00000012387) #35	REEP1 (ENSCPOG00000012389) #36	KDM3A (ENSCPOG00000023055) #37	CHMP3 (ENSCPOG00000001723)
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000020983	SUCLG1 (ENSHGLG00000047475) #9	ENSHGLG00000016621 #10	ENSHGLG00000039609 #11	ENSHGLG00000036565 #13	ENSHGLG00000049290	TCF7L1 (ENSHGLG00000044140) #14	ENSHGLG00000007230 #15	RETSAT (ENSHGLG00000009788) #16	ENSHGLG00000005816 #17	ENSHGLG00000043435	CAPG (ENSHGLG00000004995) #18	SH2D6 (ENSHGLG00000016223) #19	MAT2A (ENSHGLG00000018376) #20	GGCX (ENSHGLG00000013929) #21	VAMP8 (ENSHGLG00000012997) #22	ENSHGLG00000012613 #23	RNF181 (ENSHGLG00000045564) #24	TMEM150A (ENSHGLG00000010994) #25	C2orf68 (ENSHGLG00000036696) #26	USP39 (ENSHGLG00000015846) #27	SFTPB (ENSHGLG00000016430) #28	ENSHGLG00000033431	ATOH8 (ENSHGLG00000013394) #29	ST3GAL5 (ENSHGLG00000015817) #30	ENSHGLG00000050264	ENSHGLG00000006334 #32	PTCD3 (ENSHGLG00000007937) #33	IMMT (ENSHGLG00000004647) #34	ENSHGLG00000049882	MRPL35 (ENSHGLG00000042289) #35
Lagomorpha	ANCESTRAL SPECIES	47	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00910000146589	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Rabbit	MODERN SPECIES	11	ENSOCUG00000032531	ENSOCUG00000031742	DNAH6 (ENSOCUG00000010057) #10	TMSB10 (ENSOCUG00000017506) #11	TRABD2A (ENSOCUG00000010075)	ENSOCUG00000035044 #13	ENSOCUG00000002533 #13	TCF7L1 (ENSOCUG00000008749) #14	ENSOCUG00000008764 #15	RETSAT (ENSOCUG00000026865) #16	ELMOD3 (ENSOCUG00000002332) #17	CAPG (ENSOCUG00000002341) #18	ENSOCUG00000039138	MAT2A (ENSOCUG00000002361) #20	GGCX (ENSOCUG00000002368) #21	VAMP8 (ENSOCUG00000002375) #22	VAMP5 (ENSOCUG00000025906) #23	ENSOCUG00000007951 #24	TMEM150A (ENSOCUG00000007956) #25	ENSOCUG00000010066 #26	USP39 (ENSOCUG00000010070) #27	ENSOCUG00000020733 #28	ATOH8 (ENSOCUG00000003528) #29	ST3GAL5 (ENSOCUG00000010126) #30	POLR1A (ENSOCUG00000010138) #32	ENSOCUG00000010161 #33	IMMT (ENSOCUG00000010178) #34	ENSOCUG00000010188	MRPL35 (ENSOCUG00000010193) #35	REEP1 (ENSOCUG00000010196) #36	ENSOCUG00000034180
Pika	MODERN SPECIES	3193														MAT2A (ENSOPRG00000001898) #20	GGCX (ENSOPRG00000001919) #21	VAMP8 (ENSOPRG00000001958) #22	ENSOPRG00000001972	RNF181 (ENSOPRG00000001980) #24	TMEM150A (ENSOPRG00000001987) #25	C2orf68 (ENSOPRG00000002005) #26	USP39 (ENSOPRG00000002019) #27	SFTPB (ENSOPRG00000002060) #28	ST3GAL5 (ENSOPRG00000002085) #30
Primates	ANCESTRAL SPECIES	14	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT00940000163728	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901.o.a #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Lemuriformes	ANCESTRAL SPECIES	19	ENSGT00940000163728	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901.o.a #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	26	LRRTM1 (ENSMICG00000038543)	SUCLG1 (ENSMICG00000005754) #9	DNAH6 (ENSMICG00000015331) #10	ENSMICG00000035690	ENSMICG00000015388	TMSB10 (ENSMICG00000047627) #11	KCMF1 (ENSMICG00000046646) #13	TCF7L1 (ENSMICG00000016146) #14	ENSMICG00000041852 #15	RETSAT (ENSMICG00000016157) #16	ELMOD3 (ENSMICG00000014497) #17	CAPG (ENSMICG00000015066) #18	ENSMICG00000015081 #19	MAT2A (ENSMICG00000011458) #20	GGCX (ENSMICG00000011475) #21	ENSMICG00000035021 #22	VAMP5 (ENSMICG00000011486) #23	RNF181 (ENSMICG00000011489) #24	TMEM150A (ENSMICG00000026572) #25	C2orf68 (ENSMICG00000044296) #26	USP39 (ENSMICG00000011500) #27	SFTPB (ENSMICG00000011514) #28	ATOH8 (ENSMICG00000007934) #29	ST3GAL5 (ENSMICG00000045558) #30	POLR1A (ENSMICG00000000757) #32	PTCD3 (ENSMICG00000000761) #33	IMMT (ENSMICG00000000770) #34	MRPL35 (ENSMICG00000000776) #35	REEP1 (ENSMICG00000000777) #36	KDM3A (ENSMICG00000000781) #37	ENSMICG00000005492
Mouse lemur	MODERN SPECIES	10	ENSMICG00000029575	ENSMICG00000033758	ENSMICG00000033941	ADCYAP1 (ENSMICG00000030488)	YES1 (ENSMICG00000028620)	ENOSF1 (ENSMICG00000014847)	TYMS (ENSMICG00000014830)	CLUL1 (ENSMICG00000017333)	COLEC12 (ENSMICG00000004528)	THOC1 (ENSMICG00000027200)	USP14 (ENSMICG00000009020)	ROCK1 (ENSMICG00000014892)	GREB1L (ENSMICG00000013562)	ESCO1 (ENSMICG00000008993)	SNRPD1 (ENSMICG00000044066)	ENSMICG00000034736 #22	ABHD3 (ENSMICG00000002109)	MIB1 (ENSMICG00000007890)	GATA6 (ENSMICG00000044131)	ENSMICG00000014338	RBBP8 (ENSMICG00000009274)	CABLES1 (ENSMICG00000009282)	TMEM241 (ENSMICG00000009287)	RIOK3 (ENSMICG00000009293)	RMC1 (ENSMICG00000009300)	NPC1 (ENSMICG00000009311)	ANKRD29 (ENSMICG00000009326)	LAMA3 (ENSMICG00000009335)	TTC39C (ENSMICG00000009394)	ENSMICG00000044405	OSBPL1A (ENSMICG00000014621)
Lemuriformes_a	ANCESTRAL SPECIES	36			ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00910000147626	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901.o.a #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37	ENSGT00950000182832.C
Greater bamboo lemur	MODERN SPECIES	614														MAT2A (ENSPSMG00000023856) #20	GGCX (ENSPSMG00000023829) #21	VAMP8 (ENSPSMG00000023814) #22	VAMP5 (ENSPSMG00000023800) #23	RNF181 (ENSPSMG00000023793) #24	TMEM150A (ENSPSMG00000023779) #25	C2orf68 (ENSPSMG00000023768) #26	USP39 (ENSPSMG00000023744) #27	SFTPB (ENSPSMG00000023656) #28	ATOH8 (ENSPSMG00000023652) #29	ST3GAL5 (ENSPSMG00000023620) #30	POLR1A (ENSPSMG00000023525) #32	PTCD3 (ENSPSMG00000023446) #33	IMMT (ENSPSMG00000023275) #34	ENSPSMG00000023191 #35	REEP1 (ENSPSMG00000023171) #36	KDM3A (ENSPSMG00000023071) #37	CHMP3 (ENSPSMG00000022960)
Coquerels sifaka	MODERN SPECIES	300					ENSPCOG00000012720 #9	DNAH6 (ENSPCOG00000021699) #10	TMSB10 (ENSPCOG00000020577) #11	KCMF1 (ENSPCOG00000024804) #13	TCF7L1 (ENSPCOG00000027574) #14	RETSAT (ENSPCOG00000018203) #16	ELMOD3 (ENSPCOG00000016503) #17	CAPG (ENSPCOG00000017087) #18	ENSPCOG00000027552 #19	MAT2A (ENSPCOG00000013199) #20	GGCX (ENSPCOG00000017501) #21	VAMP8 (ENSPCOG00000025762) #22	VAMP5 (ENSPCOG00000008979) #23	RNF181 (ENSPCOG00000019878) #24	TMEM150A (ENSPCOG00000019283) #25	C2orf68 (ENSPCOG00000017415) #26	USP39 (ENSPCOG00000018540) #27	ENSPCOG00000027418 #28	ATOH8 (ENSPCOG00000022872) #29	ST3GAL5 (ENSPCOG00000028704) #30	POLR1A (ENSPCOG00000026987) #32	PTCD3 (ENSPCOG00000005822) #33	IMMT (ENSPCOG00000028075) #34	MRPL35 (ENSPCOG00000007856) #35	REEP1 (ENSPCOG00000004132) #36	KDM3A (ENSPCOG00000008403) #37	CHMP3 (ENSPCOG00000018240)
Bushbaby	MODERN SPECIES	262					SUCLG1 (ENSOGAG00000004142) #9	DNAH6 (ENSOGAG00000011781) #10	ENSOGAG00000002147 #11	KCMF1 (ENSOGAG00000034863) #13	TCF7L1 (ENSOGAG00000001078) #14	ENSOGAG00000032714 #15	RETSAT (ENSOGAG00000001079) #16	ELMOD3 (ENSOGAG00000001081) #17	CAPG (ENSOGAG00000001084) #18	MAT2A (ENSOGAG00000026925) #20	GGCX (ENSOGAG00000010470) #21	VAMP8 (ENSOGAG00000012281) #22	VAMP5 (ENSOGAG00000012283) #23	RNF181 (ENSOGAG00000012284) #24	TMEM150A (ENSOGAG00000012288) #25	C2orf68 (ENSOGAG00000033817) #26	USP39 (ENSOGAG00000012291) #27	SFTPB (ENSOGAG00000012294) #28	ATOH8 (ENSOGAG00000025987) #29	ST3GAL5 (ENSOGAG00000016459) #30	POLR1A (ENSOGAG00000004031) #32	PTCD3 (ENSOGAG00000004040) #33	ENSOGAG00000004046 #34	MRPL35 (ENSOGAG00000004048) #35	REEP1 (ENSOGAG00000004049) #36	KDM3A (ENSOGAG00000011445) #37	ENSOGAG00000030818
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT01030000234543.A.a	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613.q #16	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547 #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Tarsier	MODERN SPECIES	1905													ENSTSYG00000033439 #19	ENSTSYG00000036288 #20	GGCX (ENSTSYG00000008648) #21	VAMP8 (ENSTSYG00000009911) #22	VAMP5 (ENSTSYG00000001454) #23	RNF181 (ENSTSYG00000007140) #24	TMEM150A (ENSTSYG00000034230) #25	ENSTSYG00000027566 #26	USP39 (ENSTSYG00000000260) #27	SFTPB (ENSTSYG00000031502) #28
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613.q #16	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00910000146589	ENSGT00910000147328	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00910000147626	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00910000147328	ENSGT00910000146589	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00390000012818.o.a.a.b	ENSGT00910000147626	ENSGT00910000147298	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00910000147328	ENSGT00910000146589	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Hominidae	ANCESTRAL SPECIES	19	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00390000012818.o.a.a.b	ENSGT00910000147626	ENSGT00910000147298	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00390000012818.o.a.a.b	ENSGT00910000147626	ENSGT00910000147298	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371.e #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00390000012818.o.a.a.b	ENSGT00910000147626	ENSGT00910000147298	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371.e #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Pan	ANCESTRAL SPECIES	17	ENSGT00940000163007 #11	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.a.a.b	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00390000012818.o.a.a.b	ENSGT00910000147626	ENSGT00910000147298	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371.e #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Bonobo	MODERN SPECIES	14	TMSB10 (ENSPPAG00000012732) #11	ENSPPAG00000037652	KCMF1 (ENSPPAG00000031415) #13	TCF7L1 (ENSPPAG00000030803) #14	ENSPPAG00000035809	ENSPPAG00000036633	ENSPPAG00000041446	ENSPPAG00000043071	ENSPPAG00000032707 #15	RETSAT (ENSPPAG00000031643) #16	ELMOD3 (ENSPPAG00000027146) #17	CAPG (ENSPPAG00000035666) #18	ENSPPAG00000037603 #19	MAT2A (ENSPPAG00000041128) #20	GGCX (ENSPPAG00000031307) #21	VAMP8 (ENSPPAG00000031084) #22	VAMP5 (ENSPPAG00000031044) #23	RNF181 (ENSPPAG00000031062) #24	TMEM150A (ENSPPAG00000029677) #25	C2orf68 (ENSPPAG00000027113) #26	USP39 (ENSPPAG00000028703) #27	SFTPB (ENSPPAG00000028425) #28	ENSPPAG00000029229	ATOH8 (ENSPPAG00000038955) #29	ST3GAL5 (ENSPPAG00000030557) #30	POLR1A (ENSPPAG00000042450) #32	PTCD3 (ENSPPAG00000027578) #33	IMMT (ENSPPAG00000031689) #34	MRPL35 (ENSPPAG00000042773) #35	REEP1 (ENSPPAG00000040193) #36	ENSPPAG00000036721 #37
Human	MODERN SPECIES	11	CTNNA2 (ENSG00000066032)	LRRTM1 (ENSG00000162951)	SUCLG1 (ENSG00000163541) #9	DNAH6 (ENSG00000115423) #10	TRABD2A (ENSG00000186854)	TMSB10 (ENSG00000034510) #11	KCMF1 (ENSG00000176407) #13	TCF7L1 (ENSG00000152284) #14	TGOLN2 (ENSG00000152291) #15	RETSAT (ENSG00000042445) #16	ELMOD3 (ENSG00000115459) #17	CAPG (ENSG00000042493) #18	SH2D6 (ENSG00000152292) #19	MAT2A (ENSG00000168906) #20	GGCX (ENSG00000115486) #21	VAMP8 (ENSG00000118640) #22	VAMP5 (ENSG00000168899) #23	RNF181 (ENSG00000168894) #24	TMEM150A (ENSG00000168890) #25	USP39 (ENSG00000168883) #27	C2orf68 (ENSG00000168887) #26	SFTPB (ENSG00000168878) #28	GNLY (ENSG00000115523)	ATOH8 (ENSG00000168874) #29	ST3GAL5 (ENSG00000115525) #30	POLR1A (ENSG00000068654) #32	PTCD3 (ENSG00000132300) #33	IMMT (ENSG00000132305) #34	MRPL35 (ENSG00000132313) #35	REEP1 (ENSG00000068615) #36	KDM3A (ENSG00000115548) #37
Orangutan	MODERN SPECIES	14	ENSPPYG00000012243	SUCLG1 (ENSPPYG00000040003) #9	ENSPPYG00000039253	DNAH6 (ENSPPYG00000012240) #10	TRABD2A (ENSPPYG00000012239)	TMSB10 (ENSPPYG00000030623) #11	KCMF1 (ENSPPYG00000012235) #13	TCF7L1 (ENSPPYG00000012234) #14	TGOLN2 (ENSPPYG00000012712) #15	RETSAT (ENSPPYG00000012233) #16	ELMOD3 (ENSPPYG00000012232) #17	CAPG (ENSPPYG00000012231) #18	SH2D6 (ENSPPYG00000012230) #19	MAT2A (ENSPPYG00000012229) #20	GGCX (ENSPPYG00000012228) #21	VAMP8 (ENSPPYG00000012227) #22	VAMP5 (ENSPPYG00000036939) #23	RNF181 (ENSPPYG00000012225) #24	TMEM150A (ENSPPYG00000034938) #25	C2orf68 (ENSPPYG00000035994) #26	USP39 (ENSPPYG00000012222) #27	SFTPB (ENSPPYG00000012221) #28	ENSPPYG00000012220	ATOH8 (ENSPPYG00000012219) #29	ST3GAL5 (ENSPPYG00000033548) #30	POLR1A (ENSPPYG00000012217) #32	PTCD3 (ENSPPYG00000012216) #33	IMMT (ENSPPYG00000039510) #34	MRPL35 (ENSPPYG00000032949) #35	REEP1 (ENSPPYG00000012213) #36	KDM3A (ENSPPYG00000012212) #37
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00910000147298	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00910000147328	ENSGT00910000146589	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00910000147328	ENSGT00910000146589	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Vervet Monkey	MODERN SPECIES	5	LRRTM1 (ENSCSAG00000019436)	CTNNA2 (ENSCSAG00000015885)	SUCLG1 (ENSCSAG00000015890) #9	DNAH6 (ENSCSAG00000015982) #10	TRABD2A (ENSCSAG00000016047)	ENSCSAG00000016057	ENSCSAG00000019435	TCF7L1 (ENSCSAG00000016081) #14	TGOLN2 (ENSCSAG00000016094) #15	RETSAT (ENSCSAG00000016104) #16	ELMOD3 (ENSCSAG00000016108) #17	CAPG (ENSCSAG00000016141) #18	ENSCSAG00000016162 #19	MAT2A (ENSCSAG00000016171) #20	GGCX (ENSCSAG00000016185) #21	VAMP8 (ENSCSAG00000016190) #22	VAMP5 (ENSCSAG00000016193) #23	RNF181 (ENSCSAG00000016198) #24	TMEM150A (ENSCSAG00000016204) #25	C2orf68 (ENSCSAG00000016209) #26	USP39 (ENSCSAG00000016215) #27	SFTPB (ENSCSAG00000016227) #28	ENSCSAG00000016230	ATOH8 (ENSCSAG00000016234) #29	ST3GAL5 (ENSCSAG00000016237) #30	POLR1A (ENSCSAG00000016251) #32	PTCD3 (ENSCSAG00000016267) #33	IMMT (ENSCSAG00000016310) #34	REEP1 (ENSCSAG00000016327) #36	KDM3A (ENSCSAG00000016343) #37	CHMP3 (ENSCSAG00000016348)
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171.t #13	ENSGT00940000157038 #14	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00910000147328	ENSGT00910000146589	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Macaca	ANCESTRAL SPECIES	17	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171.t #13	ENSGT00940000157038.e #14	ENSGT00940000157038.f #14	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00910000147328	ENSGT00910000146589	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929.e #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313.g #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Pig-tailed macaque	MODERN SPECIES	341	TRABD2A (ENSMNEG00000043453)	TMSB10 (ENSMNEG00000033093) #11	ENSMNEG00000011868 #13	KCMF1 (ENSMNEG00000042627) #13	TCF7L1 (ENSMNEG00000044913) #14	ENSMNEG00000017672	ENSMNEG00000016717 #16	TGOLN2 (ENSMNEG00000034111) #15	RETSAT (ENSMNEG00000043728) #16	ELMOD3 (ENSMNEG00000035964) #17	CAPG (ENSMNEG00000045231) #18	ENSMNEG00000030307	ENSMNEG00000042631	MAT2A (ENSMNEG00000042382) #20	GGCX (ENSMNEG00000023012) #21	VAMP8 (ENSMNEG00000036220) #22	VAMP5 (ENSMNEG00000036172) #23	RNF181 (ENSMNEG00000040275) #24	TMEM150A (ENSMNEG00000014445) #25	C2orf68 (ENSMNEG00000043318) #26	USP39 (ENSMNEG00000040046) #27	SFTPB (ENSMNEG00000030255) #28	GNLY (ENSMNEG00000043254)	ATOH8 (ENSMNEG00000041664) #29	ENSMNEG00000032428 #30	POLR1A (ENSMNEG00000043313) #32	PTCD3 (ENSMNEG00000032067) #33	IMMT (ENSMNEG00000030355) #34	MRPL35 (ENSMNEG00000043851) #35	REEP1 (ENSMNEG00000035235) #36	KDM3A (ENSMNEG00000043870) #37
Macaca_a	ANCESTRAL SPECIES	15	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000161627.a.a.a.a.b.a.a.b.b.a.a	ENSGT00940000163007 #11	ENSGT00510000047171.t #13	ENSGT00940000157038.e #14	ENSGT00940000157038.f #14	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT01030000240253	ENSGT00940000161151 #29	ENSGT00940000157929.e #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313.g #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Rhesus	MODERN SPECIES	4	SUCLG1 (ENSMMUG00000000908) #9	DNAH6 (ENSMMUG00000019116) #10	TRABD2A (ENSMMUG00000008855)	ENSMMUG00000051834	TMSB10 (ENSMMUG00000056004) #11	ENSMMUG00000062644	KCMF1 (ENSMMUG00000001414) #13	TCF7L1 (ENSMMUG00000020134) #14	TGOLN2 (ENSMMUG00000019417) #15	RETSAT (ENSMMUG00000019416) #16	ELMOD3 (ENSMMUG00000002673) #17	CAPG (ENSMMUG00000002675) #18	SH2D6 (ENSMMUG00000009966) #19	MAT2A (ENSMMUG00000004450) #20	GGCX (ENSMMUG00000004446) #21	VAMP8 (ENSMMUG00000030785) #22	VAMP5 (ENSMMUG00000058122) #23	RNF181 (ENSMMUG00000063098) #24	TMEM150A (ENSMMUG00000062509) #25	C13H2orf68 (ENSMMUG00000050980) #26	ENSMMUG00000051721	USP39 (ENSMMUG00000017820) #27	SFTPB (ENSMMUG00000017818) #28	ENSMMUG00000063583	ATOH8 (ENSMMUG00000047424) #29	ST3GAL5 (ENSMMUG00000019559) #30	POLR1A (ENSMMUG00000015815) #32	PTCD3 (ENSMMUG00000015820) #33	IMMT (ENSMMUG00000015824) #34	MRPL35 (ENSMMUG00000020932) #35	REEP1 (ENSMMUG00000020930) #36
Crab-eating macaque	MODERN SPECIES	4	ENSMFAG00000053884	ENSMFAG00000041894 #11	ENSMFAG00000063256	KCMF1 (ENSMFAG00000044887) #13	TCF7L1 (ENSMFAG00000043006) #14	ENSMFAG00000057476 #14	ENSMFAG00000035638 #16	TGOLN2 (ENSMFAG00000002786) #15	RETSAT (ENSMFAG00000001631) #16	ELMOD3 (ENSMFAG00000032988) #17	ENSMFAG00000037110	CAPG (ENSMFAG00000003357) #18	ENSMFAG00000002993 #19	MAT2A (ENSMFAG00000002027) #20	GGCX (ENSMFAG00000045991) #21	VAMP8 (ENSMFAG00000034493) #22	VAMP5 (ENSMFAG00000009769) #23	RNF181 (ENSMFAG00000047260) #24	TMEM150A (ENSMFAG00000003805) #25	C2orf68 (ENSMFAG00000063159) #26	USP39 (ENSMFAG00000041090) #27	SFTPB (ENSMFAG00000040839) #28	ENSMFAG00000063745	ENSMFAG00000004079	ATOH8 (ENSMFAG00000031235) #29	ST3GAL5 (ENSMFAG00000043554) #30	POLR1A (ENSMFAG00000046097) #32	PTCD3 (ENSMFAG00000042757) #33	IMMT (ENSMFAG00000044373) #34	MRPL35 (ENSMFAG00000002964) #35	REEP1 (ENSMFAG00000038270) #36
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171.s.a #13	ENSGT00940000157038 #14	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00910000147328	ENSGT00910000146589	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Olive baboon	MODERN SPECIES	5	ENSPANG00000044948	SUCLG1 (ENSPANG00000018470) #9	DNAH6 (ENSPANG00000017584) #10	TRABD2A (ENSPANG00000026230)	TMSB10 (ENSPANG00000045803) #11	KCMF1 (ENSPANG00000007610) #13	TCF7L1 (ENSPANG00000018548) #14	ENSPANG00000050077 #16	TGOLN2 (ENSPANG00000005831) #15	RETSAT (ENSPANG00000009008) #16	ELMOD3 (ENSPANG00000024547) #17	CAPG (ENSPANG00000000842) #18	ENSPANG00000004074 #19	MAT2A (ENSPANG00000024065) #20	GGCX (ENSPANG00000020859) #21	VAMP8 (ENSPANG00000017285) #22	VAMP5 (ENSPANG00000016261) #23	RNF181 (ENSPANG00000024386) #24	TMEM150A (ENSPANG00000006521) #25	USP39 (ENSPANG00000017132) #27	C2orf68 (ENSPANG00000011060) #26	SFTPB (ENSPANG00000011084) #28	GNLY (ENSPANG00000022008)	ATOH8 (ENSPANG00000048662) #29	ST3GAL5 (ENSPANG00000022914) #30	POLR1A (ENSPANG00000025908) #32	PTCD3 (ENSPANG00000009006) #33	IMMT (ENSPANG00000012838) #34	MRPL35 (ENSPANG00000025906) #35	REEP1 (ENSPANG00000009005) #36	KDM3A (ENSPANG00000012322) #37
Cercopithecinae_d	ANCESTRAL SPECIES	136	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171.s.a #13	ENSGT00940000157038 #14	ENSGT00390000012818.o.a.a.a.a	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00910000147298	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00910000147328	ENSGT00910000146589	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Drill	MODERN SPECIES	1471					ENSMLEG00000019792	TCF7L1 (ENSMLEG00000034494) #14	TGOLN2 (ENSMLEG00000032339) #15	ENSMLEG00000042086	RETSAT (ENSMLEG00000035987) #16	ELMOD3 (ENSMLEG00000044317) #17	CAPG (ENSMLEG00000043889) #18	ENSMLEG00000033386	ENSMLEG00000030069	MAT2A (ENSMLEG00000028877) #20	GGCX (ENSMLEG00000029112) #21	VAMP8 (ENSMLEG00000036507) #22	VAMP5 (ENSMLEG00000036477) #23	RNF181 (ENSMLEG00000029338) #24	TMEM150A (ENSMLEG00000033025) #25	C2orf68 (ENSMLEG00000037933) #26	USP39 (ENSMLEG00000030185) #27	SFTPB (ENSMLEG00000034724) #28	GNLY (ENSMLEG00000031388)	ATOH8 (ENSMLEG00000038096) #29	ST3GAL5 (ENSMLEG00000037788) #30
Sooty mangabey	MODERN SPECIES	123	TRABD2A (ENSCATG00000034302)	TMSB10 (ENSCATG00000040005) #11	ENSCATG00000029438 #13	TCF7L1 (ENSCATG00000039504) #14	ENSCATG00000033790	ENSCATG00000024477 #16	TGOLN2 (ENSCATG00000035819) #15	ENSCATG00000036711	RETSAT (ENSCATG00000040068) #16	ELMOD3 (ENSCATG00000037573) #17	CAPG (ENSCATG00000035643) #18	ENSCATG00000037270	ENSCATG00000039329	MAT2A (ENSCATG00000004424) #20	GGCX (ENSCATG00000035800) #21	VAMP8 (ENSCATG00000029537) #22	RNF181 (ENSCATG00000033596) #24	TMEM150A (ENSCATG00000037683) #25	C2orf68 (ENSCATG00000034407) #26	USP39 (ENSCATG00000024635) #27	SFTPB (ENSCATG00000029505) #28	GNLY (ENSCATG00000029047)	ATOH8 (ENSCATG00000042555) #29	ST3GAL5 (ENSCATG00000039141) #30	POLR1A (ENSCATG00000029786) #32	PTCD3 (ENSCATG00000036541) #33	IMMT (ENSCATG00000038962) #34	MRPL35 (ENSCATG00000037137) #35	REEP1 (ENSCATG00000037544) #36	KDM3A (ENSCATG00000016041) #37	CHMP3 (ENSCATG00000035889)
Rhinopithecus	ANCESTRAL SPECIES	280												ENSGT00910000147328	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a.s #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901.t #26	ENSGT00390000007992 #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135 #37
Black snub-nosed monkey	MODERN SPECIES	1845												ENSRBIG00000042213	ENSRBIG00000030434 #19	MAT2A (ENSRBIG00000040691) #20	GGCX (ENSRBIG00000027641) #21	VAMP8 (ENSRBIG00000032593) #22	VAMP5 (ENSRBIG00000040671) #23	RNF181 (ENSRBIG00000037300) #24	TMEM150A (ENSRBIG00000031271) #25	ENSRBIG00000028092 #26	USP39 (ENSRBIG00000030938) #27	ENSRBIG00000005054	SFTPB (ENSRBIG00000039671) #28	GNLY (ENSRBIG00000042514)	ATOH8 (ENSRBIG00000021163) #29	ST3GAL5 (ENSRBIG00000044506) #30	POLR1A (ENSRBIG00000028335) #32	PTCD3 (ENSRBIG00000034809) #33	IMMT (ENSRBIG00000033551) #34	ENSRBIG00000043270 #35	REEP1 (ENSRBIG00000044318) #36
Golden snub-nosed monkey	MODERN SPECIES	2316														MAT2A (ENSRROG00000039359) #20	GGCX (ENSRROG00000037659) #21	VAMP8 (ENSRROG00000038818) #22	VAMP5 (ENSRROG00000031654) #23	RNF181 (ENSRROG00000032844) #24	TMEM150A (ENSRROG00000036503) #25	ENSRROG00000029427 #26	USP39 (ENSRROG00000039568) #27	ENSRROG00000025648	SFTPB (ENSRROG00000027383) #28	GNLY (ENSRROG00000036075)	ATOH8 (ENSRROG00000031621) #29	ST3GAL5 (ENSRROG00000031090) #30	POLR1A (ENSRROG00000031473) #32	PTCD3 (ENSRROG00000042210) #33	IMMT (ENSRROG00000023135) #34	MRPL35 (ENSRROG00000045417) #35	REEP1 (ENSRROG00000034941) #36
Platyrrhini	ANCESTRAL SPECIES	13	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00390000017613.q #16	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305.g #18	ENSGT00910000146589	ENSGT00910000147328	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992.t #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135.a #37
Cebidae	ANCESTRAL SPECIES	15	ENSGT00940000156351 #9	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305.g #18	ENSGT00910000146589	ENSGT00910000147328	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552.e.a #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992.t #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135.a #37
Marmoset	MODERN SPECIES	5	ENSCJAG00000073910	SUCLG1 (ENSCJAG00000019805) #9	DNAH6 (ENSCJAG00000019742) #10	TRABD2A (ENSCJAG00000019738)	TMSB10 (ENSCJAG00000086618) #11	ENSCJAG00000082255	ENSCJAG00000072028	KCMF1 (ENSCJAG00000019735) #13	TCF7L1 (ENSCJAG00000039504) #14	RETSAT (ENSCJAG00000019726) #16	ELMOD3 (ENSCJAG00000019718) #17	CAPG (ENSCJAG00000041726) #18	SH2D6 (ENSCJAG00000019695) #19	MAT2A (ENSCJAG00000019681) #20	GGCX (ENSCJAG00000019657) #21	VAMP8 (ENSCJAG00000046213) #22	VAMP5 (ENSCJAG00000019651) #23	ENSCJAG00000019647 #24	TMEM150A (ENSCJAG00000019638) #25	C2orf68 (ENSCJAG00000019632) #26	USP39 (ENSCJAG00000019594) #27	SFTPB (ENSCJAG00000019581) #28	ENSCJAG00000071875	GNLY (ENSCJAG00000065652)	ATOH8 (ENSCJAG00000019571) #29	ST3GAL5 (ENSCJAG00000019564) #30	POLR1A (ENSCJAG00000019547) #32	PTCD3 (ENSCJAG00000019523) #33	IMMT (ENSCJAG00000019480) #34	ENSCJAG00000019467 #35	REEP1 (ENSCJAG00000038576) #36
Cebidae_a	ANCESTRAL SPECIES	91		ENSGT00940000156351 #9	ENSGT00390000017955.c.q.b	ENSGT00940000154761 #10	ENSGT00940000162805	ENSGT00940000163007 #11	ENSGT00510000047171 #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613.r #16	ENSGT00390000009488 #17	ENSGT00940000159305.g #18	ENSGT00910000146589	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552.e.a #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #26	ENSGT00390000007992.t #27	ENSGT00940000161711 #28	ENSGT00390000002975	ENSGT00940000161151 #29	ENSGT00940000157929 #30	ENSGT00920000149138 #32	ENSGT00390000016876 #33	ENSGT00390000002313 #34	ENSGT00390000007547.g.a #35	ENSGT00940000159532 #36	ENSGT00940000160135.a #37
Bolivian squirrel monkey	MODERN SPECIES	196	SUCLG1 (ENSSBOG00000025277) #9	ENSSBOG00000024959	DNAH6 (ENSSBOG00000027150) #10	ENSSBOG00000026272	TRABD2A (ENSSBOG00000021372)	TMSB10 (ENSSBOG00000024439) #11	KCMF1 (ENSSBOG00000028450) #13	TCF7L1 (ENSSBOG00000024977) #14	ENSSBOG00000029932 #15	RETSAT (ENSSBOG00000027110) #16	ELMOD3 (ENSSBOG00000026015) #17	CAPG (ENSSBOG00000026620) #18	ENSSBOG00000004955	ENSSBOG00000020245 #20	ENSSBOG00000024413 #21	VAMP8 (ENSSBOG00000025099) #22	VAMP5 (ENSSBOG00000023652) #23	RNF181 (ENSSBOG00000025972) #24	TMEM150A (ENSSBOG00000030498) #25	C2orf68 (ENSSBOG00000032799) #26	USP39 (ENSSBOG00000031347) #27	SFTPB (ENSSBOG00000033848) #28
Capuchin	MODERN SPECIES	651				TCF7L1 (ENSCCAG00000015290) #14	SNRPC (ENSCCAG00000028293)	ENSCCAG00000021530 #16	TGOLN2 (ENSCCAG00000026086) #15	RETSAT (ENSCCAG00000033378) #16	ELMOD3 (ENSCCAG00000019649) #17	ENSCCAG00000029318 #18	ENSCCAG00000028615	ENSCCAG00000021850 #19	ENSCCAG00000011821	MAT2A (ENSCCAG00000020027) #20	GGCX (ENSCCAG00000029602) #21	VAMP8 (ENSCCAG00000027515) #22	VAMP5 (ENSCCAG00000036984) #23	ENSCCAG00000025694 #24	TMEM150A (ENSCCAG00000019691) #25	ENSCCAG00000025404 #26	USP39 (ENSCCAG00000033512) #27	SFTPB (ENSCCAG00000027112) #28	GNLY (ENSCCAG00000030545)	ATOH8 (ENSCCAG00000023833) #29
Mas night monkey	MODERN SPECIES	633														ENSANAG00000029217 #20	GGCX (ENSANAG00000024216) #21	VAMP8 (ENSANAG00000022750) #22	VAMP5 (ENSANAG00000027585) #23	ENSANAG00000035031 #24	TMEM150A (ENSANAG00000022848) #25	C2orf68 (ENSANAG00000011782) #26	ENSANAG00000037337 #27	SFTPB (ENSANAG00000028481) #28	ENSANAG00000036833	ATOH8 (ENSANAG00000037969) #29	ST3GAL5 (ENSANAG00000027759) #30	POLR1A (ENSANAG00000033927) #32	PTCD3 (ENSANAG00000032500) #33	ENSANAG00000015996	IMMT (ENSANAG00000020307) #34	MRPL35 (ENSANAG00000030616) #35	REEP1 (ENSANAG00000034595) #36