Sciuridae	ANCESTRAL SPECIES	53						ENSGT00940000163478	ENSGT00390000004352 #10	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #27	ENSGT00390000007992 #26	ENSGT00940000161711 #28	ENSGT00940000161151	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35	ENSGT00950000182832.C #36
Marmotini	ANCESTRAL SPECIES	86					ENSGT00940000163478	ENSGT00390000004352 #10	ENSGT00940000153165.a.a.c.a.i.b.b.b.a.a #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #27	ENSGT00390000007992 #26	ENSGT00940000161711 #28	ENSGT00940000161151	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35	ENSGT00950000182832.C #36
Alpin marmot	MODERN SPECIES	118	ENSMMMG00000007007 #7	ENSMMMG00000007012 #8	ENSMMMG00000007026 #9	RPIA (ENSMMMG00000007477) #10	ENSMMMG00000007572 #11	ENSMMMG00000007617 #12	ENSMMMG00000007627 #13	TCF7L1 (ENSMMMG00000007633) #14	ENSMMMG00000007682 #15	RETSAT (ENSMMMG00000007689) #16	ENSMMMG00000007785 #17	CAPG (ENSMMMG00000007822) #18	ENSMMMG00000007857 #19	MAT2A (ENSMMMG00000007871) #20	GGCX (ENSMMMG00000008142) #21	VAMP8 (ENSMMMG00000008162) #22	VAMP5 (ENSMMMG00000008168) #23	RNF181 (ENSMMMG00000008179) #24	TMEM150A (ENSMMMG00000008189) #25	USP39 (ENSMMMG00000008203) #26	ENSMMMG00000008853 #27	SFTPB (ENSMMMG00000008881) #28	ST3GAL5 (ENSMMMG00000008911) #29	POLR1A (ENSMMMG00000008920) #30	PTCD3 (ENSMMMG00000008977) #31	IMMT (ENSMMMG00000009011) #32	MRPL35 (ENSMMMG00000009181) #33	REEP1 (ENSMMMG00000009193) #34	KDM3A (ENSMMMG00000009242) #35	CHMP3 (ENSMMMG00000009359) #36	RNF103 (ENSMMMG00000009373) #37
Marmotini_b	ANCESTRAL SPECIES	128					ENSGT00940000163478	ENSGT00390000004352 #10	ENSGT00940000153165.a.a.c.a.i.b.b.b.a.a #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #27	ENSGT00390000007992 #26	ENSGT00940000161711 #28	ENSGT00940000154129.m.r.b	ENSGT00940000161151	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35
Squirrel	MODERN SPECIES	312					RPIA (ENSSTOG00000023312) #10	ENSSTOG00000034297	ENSSTOG00000031036 #13	TCF7L1 (ENSSTOG00000021988) #14	ENSSTOG00000020177 #15	RETSAT (ENSSTOG00000026131) #16	ELMOD3 (ENSSTOG00000009420) #17	CAPG (ENSSTOG00000009431) #18	ENSSTOG00000010788 #19	MAT2A (ENSSTOG00000010796) #20	GGCX (ENSSTOG00000010797) #21	VAMP8 (ENSSTOG00000005962) #22	VAMP5 (ENSSTOG00000005966) #23	RNF181 (ENSSTOG00000005973) #24	TMEM150A (ENSSTOG00000023355) #25	C2orf68 (ENSSTOG00000032886) #27	USP39 (ENSSTOG00000015986) #26	SFTPB (ENSSTOG00000026197) #28	ENSSTOG00000033478	ATOH8 (ENSSTOG00000006538)	ST3GAL5 (ENSSTOG00000024816) #29	ENSSTOG00000012609	POLR1A (ENSSTOG00000012580) #30	PTCD3 (ENSSTOG00000012611) #31	IMMT (ENSSTOG00000012624) #32	MRPL35 (ENSSTOG00000030233) #33	REEP1 (ENSSTOG00000025141) #34
Arctic ground squirrel	MODERN SPECIES	609					IGKC (ENSUPAG00010018047)	RPIA (ENSUPAG00010018051) #10	ENSUPAG00010018060	TCF7L1 (ENSUPAG00010018088) #14	ENSUPAG00010018102 #15	RETSAT (ENSUPAG00010018105) #16	ELMOD3 (ENSUPAG00010018158) #17	CAPG (ENSUPAG00010018187) #18	SH2D6 (ENSUPAG00010018214) #19	MAT2A (ENSUPAG00010000075) #20	GGCX (ENSUPAG00010000144) #21	VAMP8 (ENSUPAG00010000178) #22	ENSUPAG00010000192 #23	TMEM150A (ENSUPAG00010000226) #25	RNF181 (ENSUPAG00010000242) #24	ENSUPAG00010000260 #27	USP39 (ENSUPAG00010000286) #26	SFTPB (ENSUPAG00010000319) #28	ENSUPAG00010000360
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005019338 ##12	ENSSVLG00005019271	ENSSVLG00005018002 #11	ENSSVLG00005017863 ##12	ENSSVLG00005017786 #12	TCF7L1 (ENSSVLG00005017741) #14	ENSSVLG00005017693 #15	RETSAT (ENSSVLG00005017559) #16	ELMOD3 (ENSSVLG00005017414) #17	CAPG (ENSSVLG00005017210) #18	ENSSVLG00005017177	SH2D6 (ENSSVLG00005016979) #19	MAT2A (ENSSVLG00005016926) #20	ENSSVLG00005016868	GGCX (ENSSVLG00005016698) #21	VAMP8 (ENSSVLG00005016627) #22	VAMP5 (ENSSVLG00005016585) #23	RNF181 (ENSSVLG00005016555) #24	TMEM150A (ENSSVLG00005016477) #25	ENSSVLG00005016431 #27	USP39 (ENSSVLG00005016257) #26	SFTPB (ENSSVLG00005015980) #28	ATOH8 (ENSSVLG00005015922)	ST3GAL5 (ENSSVLG00005015795) #29	POLR1A (ENSSVLG00005015696) #30	PTCD3 (ENSSVLG00005016912) #31	IMMT (ENSSVLG00005016785) #32	MRPL35 (ENSSVLG00005016713) #33	REEP1 (ENSSVLG00005016418) #34	KDM3A (ENSSVLG00005016348) #35	CHMP3 (ENSSVLG00005016280) #36