Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000154447.z	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007	ENSGT00510000047171.n	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #27	ENSGT00390000007992 #26	ENSGT00940000161711 #28	ENSGT00940000161151	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35	ENSGT00950000182832.C #36
Sciuridae	ANCESTRAL SPECIES	53						ENSGT00940000163478	ENSGT00390000004352 #10	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #27	ENSGT00390000007992 #26	ENSGT00940000161711 #28	ENSGT00940000161151	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35	ENSGT00950000182832.C #36
Marmotini	ANCESTRAL SPECIES	86					ENSGT00940000163478	ENSGT00390000004352 #10	ENSGT00940000153165.a.a.c.a.i.b.b.b.a.a #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #27	ENSGT00390000007992 #26	ENSGT00940000161711 #28	ENSGT00940000161151	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35	ENSGT00950000182832.C #36
Alpin marmot	MODERN SPECIES	118	ENSMMMG00000007007 #7	ENSMMMG00000007012 #8	ENSMMMG00000007026 #9	RPIA (ENSMMMG00000007477) #10	ENSMMMG00000007572 #11	ENSMMMG00000007617 #12	ENSMMMG00000007627 #13	TCF7L1 (ENSMMMG00000007633) #14	ENSMMMG00000007682 #15	RETSAT (ENSMMMG00000007689) #16	ENSMMMG00000007785 #17	CAPG (ENSMMMG00000007822) #18	ENSMMMG00000007857 #19	MAT2A (ENSMMMG00000007871) #20	GGCX (ENSMMMG00000008142) #21	VAMP8 (ENSMMMG00000008162) #22	VAMP5 (ENSMMMG00000008168) #23	RNF181 (ENSMMMG00000008179) #24	TMEM150A (ENSMMMG00000008189) #25	USP39 (ENSMMMG00000008203) #26	ENSMMMG00000008853 #27	SFTPB (ENSMMMG00000008881) #28	ST3GAL5 (ENSMMMG00000008911) #29	POLR1A (ENSMMMG00000008920) #30	PTCD3 (ENSMMMG00000008977) #31	IMMT (ENSMMMG00000009011) #32	MRPL35 (ENSMMMG00000009181) #33	REEP1 (ENSMMMG00000009193) #34	KDM3A (ENSMMMG00000009242) #35	CHMP3 (ENSMMMG00000009359) #36	RNF103 (ENSMMMG00000009373) #37
Marmotini_b	ANCESTRAL SPECIES	128					ENSGT00940000163478	ENSGT00390000004352 #10	ENSGT00940000153165.a.a.c.a.i.b.b.b.a.a #13	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #27	ENSGT00390000007992 #26	ENSGT00940000161711 #28	ENSGT00940000154129.m.r.b	ENSGT00940000161151	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35
Squirrel	MODERN SPECIES	312					RPIA (ENSSTOG00000023312) #10	ENSSTOG00000034297	ENSSTOG00000031036 #13	TCF7L1 (ENSSTOG00000021988) #14	ENSSTOG00000020177 #15	RETSAT (ENSSTOG00000026131) #16	ELMOD3 (ENSSTOG00000009420) #17	CAPG (ENSSTOG00000009431) #18	ENSSTOG00000010788 #19	MAT2A (ENSSTOG00000010796) #20	GGCX (ENSSTOG00000010797) #21	VAMP8 (ENSSTOG00000005962) #22	VAMP5 (ENSSTOG00000005966) #23	RNF181 (ENSSTOG00000005973) #24	TMEM150A (ENSSTOG00000023355) #25	C2orf68 (ENSSTOG00000032886) #27	USP39 (ENSSTOG00000015986) #26	SFTPB (ENSSTOG00000026197) #28	ENSSTOG00000033478	ATOH8 (ENSSTOG00000006538)	ST3GAL5 (ENSSTOG00000024816) #29	ENSSTOG00000012609	POLR1A (ENSSTOG00000012580) #30	PTCD3 (ENSSTOG00000012611) #31	IMMT (ENSSTOG00000012624) #32	MRPL35 (ENSSTOG00000030233) #33	REEP1 (ENSSTOG00000025141) #34
Arctic ground squirrel	MODERN SPECIES	609					IGKC (ENSUPAG00010018047)	RPIA (ENSUPAG00010018051) #10	ENSUPAG00010018060	TCF7L1 (ENSUPAG00010018088) #14	ENSUPAG00010018102 #15	RETSAT (ENSUPAG00010018105) #16	ELMOD3 (ENSUPAG00010018158) #17	CAPG (ENSUPAG00010018187) #18	SH2D6 (ENSUPAG00010018214) #19	MAT2A (ENSUPAG00010000075) #20	GGCX (ENSUPAG00010000144) #21	VAMP8 (ENSUPAG00010000178) #22	ENSUPAG00010000192 #23	TMEM150A (ENSUPAG00010000226) #25	RNF181 (ENSUPAG00010000242) #24	ENSUPAG00010000260 #27	USP39 (ENSUPAG00010000286) #26	SFTPB (ENSUPAG00010000319) #28	ENSUPAG00010000360
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005019338 ##12	ENSSVLG00005019271	ENSSVLG00005018002 #11	ENSSVLG00005017863 ##12	ENSSVLG00005017786 #12	TCF7L1 (ENSSVLG00005017741) #14	ENSSVLG00005017693 #15	RETSAT (ENSSVLG00005017559) #16	ELMOD3 (ENSSVLG00005017414) #17	CAPG (ENSSVLG00005017210) #18	ENSSVLG00005017177	SH2D6 (ENSSVLG00005016979) #19	MAT2A (ENSSVLG00005016926) #20	ENSSVLG00005016868	GGCX (ENSSVLG00005016698) #21	VAMP8 (ENSSVLG00005016627) #22	VAMP5 (ENSSVLG00005016585) #23	RNF181 (ENSSVLG00005016555) #24	TMEM150A (ENSSVLG00005016477) #25	ENSSVLG00005016431 #27	USP39 (ENSSVLG00005016257) #26	SFTPB (ENSSVLG00005015980) #28	ATOH8 (ENSSVLG00005015922)	ST3GAL5 (ENSSVLG00005015795) #29	POLR1A (ENSSVLG00005015696) #30	PTCD3 (ENSSVLG00005016912) #31	IMMT (ENSSVLG00005016785) #32	MRPL35 (ENSSVLG00005016713) #33	REEP1 (ENSSVLG00005016418) #34	KDM3A (ENSSVLG00005016348) #35	CHMP3 (ENSSVLG00005016280) #36
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00940000154447.z.f	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007	ENSGT00510000047171.n	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #27	ENSGT00390000007992 #26	ENSGT00940000161711 #28	ENSGT00940000161151	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35	ENSGT00950000182832.C #36
Hystricomorpha_a	ANCESTRAL SPECIES	35	ENSGT00940000154447.z.f	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007	ENSGT00510000047171.n	ENSGT00940000157038 #14	ENSGT00530000064712 #15	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #27	ENSGT00390000007992 #26	ENSGT00940000161711 #28	ENSGT00940000161151	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35	ENSGT00950000182832.C #36
Hystricomorpha_b	ANCESTRAL SPECIES	33	ENSGT00940000154447.z.e.a	ENSGT00940000154447.z.f	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007	ENSGT00510000047171.n	ENSGT00940000157038 #14	ENSGT00390000017613 #16	ENSGT00390000009488 #17	ENSGT00940000159305 #18	ENSGT00940000162822 #19	ENSGT00950000183185.c.a.a #20	ENSGT00390000014909 #21	ENSGT00940000160325.b #22	ENSGT00730000111371 #23	ENSGT00940000160552 #24	ENSGT01030000234578.A.b.a.a.b #25	ENSGT00390000001901 #27	ENSGT00390000007992 #26	ENSGT00940000161711 #28	ENSGT00940000161151	ENSGT00940000157929 #29	ENSGT00920000149138 #30	ENSGT00390000016876 #31	ENSGT00390000002313 #32	ENSGT00390000007547 #33	ENSGT00940000159532 #34	ENSGT00940000160135 #35	ENSGT00950000182832.C #36
Long-tailed chinchilla	MODERN SPECIES	131	ENSCLAG00000005858	LRRTM1 (ENSCLAG00000005364)	CTNNA2 (ENSCLAG00000013755)	ENSCLAG00000009325	SUCLG1 (ENSCLAG00000008580)	DNAH6 (ENSCLAG00000006035)	TMSB10 (ENSCLAG00000010365)	KCMF1 (ENSCLAG00000009986)	TCF7L1 (ENSCLAG00000007414) #14	RETSAT (ENSCLAG00000008939) #16	ELMOD3 (ENSCLAG00000009003) #17	CAPG (ENSCLAG00000004481) #18	ENSCLAG00000006141 #19	MAT2A (ENSCLAG00000007205) #20	GGCX (ENSCLAG00000005838) #21	VAMP8 (ENSCLAG00000008880) #22	VAMP5 (ENSCLAG00000009915) #23	RNF181 (ENSCLAG00000006082) #24	TMEM150A (ENSCLAG00000005500) #25	C2orf68 (ENSCLAG00000009438) #27	USP39 (ENSCLAG00000006866) #26	SFTPB (ENSCLAG00000006471) #28	ATOH8 (ENSCLAG00000006142)	ST3GAL5 (ENSCLAG00000006950) #29	POLR1A (ENSCLAG00000005187) #30	PTCD3 (ENSCLAG00000007992) #31	IMMT (ENSCLAG00000005278) #32	MRPL35 (ENSCLAG00000004489) #33	REEP1 (ENSCLAG00000012499) #34	KDM3A (ENSCLAG00000011990) #35	CHMP3 (ENSCLAG00000009289) #36
Degu	MODERN SPECIES	203		ENSODEG00000002222	ENSODEG00000002212	SUCLG1 (ENSODEG00000002195)	DNAH6 (ENSODEG00000003756)	ENSODEG00000003596	ENSODEG00000003586	TCF7L1 (ENSODEG00000003559) #14	RETSAT (ENSODEG00000003469) #16	ELMOD3 (ENSODEG00000003393) #17	CAPG (ENSODEG00000003321) #18	ENSODEG00000018929	SH2D6 (ENSODEG00000003239) #19	ENSODEG00000003186 #20	GGCX (ENSODEG00000003141) #21	VAMP8 (ENSODEG00000003107) #22	VAMP5 (ENSODEG00000003093) #23	RNF181 (ENSODEG00000003046) #24	TMEM150A (ENSODEG00000003753) #25	C2orf68 (ENSODEG00000003734) #27	USP39 (ENSODEG00000003717) #26	SFTPB (ENSODEG00000003695) #28	ATOH8 (ENSODEG00000003670)	ST3GAL5 (ENSODEG00000003647) #29	ENSODEG00000018941	POLR1A (ENSODEG00000003542) #30	PTCD3 (ENSODEG00000003461) #31	IMMT (ENSODEG00000003274) #32	MRPL35 (ENSODEG00000003180) #33	REEP1 (ENSODEG00000003133) #34	KDM3A (ENSODEG00000003061) #35
Guinea pig	MODERN SPECIES	37	ENSCPOG00000004885	ENSCPOG00000032214	LRRTM1 (ENSCPOG00000001371)	CTNNA2 (ENSCPOG00000023564)	SUCLG1 (ENSCPOG00000003017)	DNAH6 (ENSCPOG00000015041)	KCMF1 (ENSCPOG00000023050)	TCF7L1 (ENSCPOG00000014492) #14	ENSCPOG00000037555 #15	RETSAT (ENSCPOG00000022640) #16	ELMOD3 (ENSCPOG00000007973) #17	CAPG (ENSCPOG00000007978) #18	ENSCPOG00000012229 #19	MAT2A (ENSCPOG00000001533) #20	GGCX (ENSCPOG00000001534) #21	VAMP8 (ENSCPOG00000001409) #22	VAMP5 (ENSCPOG00000021802) #23	RNF181 (ENSCPOG00000001938) #24	TMEM150A (ENSCPOG00000025516) #25	C2orf68 (ENSCPOG00000009311) #27	USP39 (ENSCPOG00000009315) #26	SFTPB (ENSCPOG00000035291) #28	ATOH8 (ENSCPOG00000006364)	ST3GAL5 (ENSCPOG00000000993) #29	POLR1A (ENSCPOG00000012350) #30	PTCD3 (ENSCPOG00000012371) #31	IMMT (ENSCPOG00000012379) #32	MRPL35 (ENSCPOG00000012387) #33	REEP1 (ENSCPOG00000012389) #34	KDM3A (ENSCPOG00000023055) #35	CHMP3 (ENSCPOG00000001723) #36
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000020983	SUCLG1 (ENSHGLG00000047475)	ENSHGLG00000016621	ENSHGLG00000039609	ENSHGLG00000036565	ENSHGLG00000049290	TCF7L1 (ENSHGLG00000044140) #14	ENSHGLG00000007230 #15	RETSAT (ENSHGLG00000009788) #16	ENSHGLG00000005816 #17	ENSHGLG00000043435	CAPG (ENSHGLG00000004995) #18	SH2D6 (ENSHGLG00000016223) #19	MAT2A (ENSHGLG00000018376) #20	GGCX (ENSHGLG00000013929) #21	VAMP8 (ENSHGLG00000012997) #22	ENSHGLG00000012613 #23	RNF181 (ENSHGLG00000045564) #24	TMEM150A (ENSHGLG00000010994) #25	C2orf68 (ENSHGLG00000036696) #27	USP39 (ENSHGLG00000015846) #26	SFTPB (ENSHGLG00000016430) #28	ENSHGLG00000033431	ATOH8 (ENSHGLG00000013394)	ST3GAL5 (ENSHGLG00000015817) #29	ENSHGLG00000050264	ENSHGLG00000006334 #30	PTCD3 (ENSHGLG00000007937) #31	IMMT (ENSHGLG00000004647) #32	ENSHGLG00000049882	MRPL35 (ENSHGLG00000042289) #33