Glires	ANCESTRAL SPECIES	4	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00860000136110	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.a.a.a.a	ENSGT00940000154118.b	ENSGT00940000161764 #34
Rodentia	ANCESTRAL SPECIES	5	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00860000136110	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT01090000261933	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.a.a.a.a	ENSGT00940000154118.b	ENSGT00940000161764 #34
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00860000136110	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT01090000261933	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.a.a.a.a	ENSGT00940000154118.b	ENSGT00940000161764 #34
Kangaroo rat	MODERN SPECIES	322	Os9 (ENSDORG00000007263) #7	B4galnt1 (ENSDORG00000004816) #8	Slc26a10 (ENSDORG00000027396) #9	Arhgef25 (ENSDORG00000014405) #10	Dtx3 (ENSDORG00000000412) #11	Pip4k2c (ENSDORG00000026517) #12	Kif5a (ENSDORG00000007141) #13	Dctn2 (ENSDORG00000007137) #14	Mbd6 (ENSDORG00000007136) #15	Ddit3 (ENSDORG00000007132) #16	Mars1 (ENSDORG00000007127) #17	Arhgap9 (ENSDORG00000007126) #18	Gli1 (ENSDORG00000007124) #19	Inhbe (ENSDORG00000007123) #20	Inhbc (ENSDORG00000000632) #21	R3hdm2 (ENSDORG00000011462) #22	Stac3 (ENSDORG00000011461) #23	Ndufa4l2 (ENSDORG00000024207) #24	Shmt2 (ENSDORG00000011460) #25	Nxph4 (ENSDORG00000012565) #26	Lrp1 (ENSDORG00000012553) #27	Stat6 (ENSDORG00000012548) #28	Nab2 (ENSDORG00000029120) #29	Nemp1 (ENSDORG00000013953) #30	Myo1a (ENSDORG00000001275) #31	Tac2 (ENSDORG00000001270) #32	ENSDORG00000003680 #33	Sdr9c7 (ENSDORG00000003679) #34	ENSDORG00000008049 #35	ENSDORG00000014523 #36	ENSDORG00000014522 #37
Myomorpha	ANCESTRAL SPECIES	2	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00860000136110	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT01090000261933	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.a.a.a.a	ENSGT00940000154118.b	ENSGT00940000161764 #34
Muroidea	ANCESTRAL SPECIES	5	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00860000136110	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT01090000261933	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.a.a.a.a	ENSGT00940000154118.b	ENSGT00940000161764 #34
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00860000136110	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT01090000261933	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.a.a.a.a	ENSGT00940000154118.b	ENSGT00940000161764 #34
Cricetidae	ANCESTRAL SPECIES	21	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00860000136110	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT01090000261933	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b	ENSGT00940000161764 #34	ENSGT00940000162028 #33
Cricetinae	ANCESTRAL SPECIES	22	ENSGT00530000063603.A #7	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b.q	ENSGT00940000154118.b.r	ENSGT00940000161764 #34
Chinese hamster chok1gshd	MODERN SPECIES	352	Os9 (ENSCGRG00001020659) #7	B4galnt1 (ENSCGRG00001003379) #8	Slc26a10 (ENSCGRG00001023769) #9	Arhgef25 (ENSCGRG00001022612) #10	Dtx3 (ENSCGRG00001000914) #11	Pip4k2c (ENSCGRG00001011872) #12	Kif5a (ENSCGRG00001017636) #13	Dctn2 (ENSCGRG00001015007) #14	Mbd6 (ENSCGRG00001017943) #15	Ddit3 (ENSCGRG00001015590) #16	Mars1 (ENSCGRG00001019238) #17	Arhgap9 (ENSCGRG00001021134) #18	Gli1 (ENSCGRG00001019686) #19	Inhbe (ENSCGRG00001023439) #20	Inhbc (ENSCGRG00001017014) #21	R3hdm2 (ENSCGRG00001017324) #22	Stac3 (ENSCGRG00001021668) #23	Ndufa4l2 (ENSCGRG00001021531) #24	Shmt2 (ENSCGRG00001018472) #25	Nxph4 (ENSCGRG00001014648) #26	Lrp1 (ENSCGRG00001011627) #27	ENSCGRG00001002945	Stat6 (ENSCGRG00001020526) #28	Nab2 (ENSCGRG00001018114) #29	Nemp1 (ENSCGRG00001014268) #30	Myo1a (ENSCGRG00001005373) #31	Tac2 (ENSCGRG00001014061) #32	Zbtb39 (ENSCGRG00001001407)	Gpr182 (ENSCGRG00001011877)	ENSCGRG00001016912	ENSCGRG00001003209
Cricetidae_B	ANCESTRAL SPECIES	35	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00860000136110	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT01090000261933	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b	ENSGT00940000161764 #34	ENSGT00940000162028 #33
Northern American deer mouse	MODERN SPECIES	9	ENSPEMG00000013550 #9	Arhgef25 (ENSPEMG00000011625) #10	Dtx3 (ENSPEMG00000010078) #11	Pip4k2c (ENSPEMG00000009463) #12	Kif5a (ENSPEMG00000007193) #13	ENSPEMG00000024880	Dctn2 (ENSPEMG00000003096) #14	Mbd6 (ENSPEMG00000000952) #15	Ddit3 (ENSPEMG00000025876)	Ddit3 (ENSPEMG00000000565) #16	Mars1 (ENSPEMG00000000046) #17	Arhgap9 (ENSPEMG00000018745) #18	Gli1 (ENSPEMG00000018514) #19	Inhbe (ENSPEMG00000028054) #20	Inhbc (ENSPEMG00000017942) #21	R3hdm2 (ENSPEMG00000015964) #22	Stac3 (ENSPEMG00000016520) #23	Ndufa4l2 (ENSPEMG00000025310) #24	Shmt2 (ENSPEMG00000015669) #25	Nxph4 (ENSPEMG00000014406) #26	Lrp1 (ENSPEMG00000015988) #27	Stat6 (ENSPEMG00000006873) #28	Nab2 (ENSPEMG00000003067) #29	Nemp1 (ENSPEMG00000000349) #30	Myo1a (ENSPEMG00000018549) #31	Tac2 (ENSPEMG00000007115) #32	Zbtb39 (ENSPEMG00000001529)	Gpr182 (ENSPEMG00000012025)	ENSPEMG00000008778	ENSPEMG00000030154	ENSPEMG00000029591
Prairie vole	MODERN SPECIES	10	Os9 (ENSMOCG00000004512) #7	B4galnt1 (ENSMOCG00000020319) #8	Slc26a10 (ENSMOCG00000003649) #9	Arhgef25 (ENSMOCG00000013132) #10	Dtx3 (ENSMOCG00000010598) #11	Pip4k2c (ENSMOCG00000014405) #12	Kif5a (ENSMOCG00000004701) #13	Dctn2 (ENSMOCG00000000594) #14	Mbd6 (ENSMOCG00000012812) #15	Ddit3 (ENSMOCG00000002751) #16	Mars1 (ENSMOCG00000010941) #17	Arhgap9 (ENSMOCG00000002227) #18	Gli1 (ENSMOCG00000015523) #19	Inhbe (ENSMOCG00000021734) #20	Inhbc (ENSMOCG00000001463) #21	R3hdm2 (ENSMOCG00000014425) #22	Stac3 (ENSMOCG00000014255) #23	Ndufa4l2 (ENSMOCG00000005415) #24	Shmt2 (ENSMOCG00000006177) #25	Nxph4 (ENSMOCG00000020468) #26	ENSMOCG00000000670 #27	ENSMOCG00000021063	Stat6 (ENSMOCG00000003830) #28	Nab2 (ENSMOCG00000020714) #29	Nemp1 (ENSMOCG00000011584) #30	Myo1a (ENSMOCG00000011760) #31	Tac2 (ENSMOCG00000000889) #32	Zbtb39 (ENSMOCG00000001699)	Gpr182 (ENSMOCG00000017417)	ENSMOCG00000020549	ENSMOCG00000011639
Murinae	ANCESTRAL SPECIES	22	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00860000136110	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.a.a.a.a	ENSGT00940000154118.b.w	ENSGT00940000161764 #34
Mus	ANCESTRAL SPECIES	23	ENSGT00530000063603.A #7	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b.w.b	ENSGT00940000154118.b.w.a.a	ENSGT00940000154118.b.w.a.b
Mus_A	ANCESTRAL SPECIES	11	ENSGT00530000063603.A #7	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b.w.b	ENSGT00940000154118.b.w.a.a	ENSGT00940000154118.b.w.a.b
Mus_B	ANCESTRAL SPECIES	10	ENSGT00530000063603.A #7	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b.w.b	ENSGT00940000154118.b.w.a.a	ENSGT00940000154118.b.w.a.b
Mouse	MODERN SPECIES	1	B4galnt1 (ENSMUSG00000006731) #8	Slc26a10 (ENSMUSG00000040441) #9	Arhgef25 (ENSMUSG00000019467) #10	Dtx3 (ENSMUSG00000040415) #11	Pip4k2c (ENSMUSG00000025417) #12	Kif5a (ENSMUSG00000074657) #13	Dctn2 (ENSMUSG00000025410) #14	Mbd6 (ENSMUSG00000025409) #15	Ddit3 (ENSMUSG00000025408) #16	Ddit3 (ENSMUSG00000116429)	Mars1 (ENSMUSG00000040354) #17	Arhgap9 (ENSMUSG00000040345) #18	Gli1 (ENSMUSG00000025407) #19	Inhbe (ENSMUSG00000047492) #20	Inhbc (ENSMUSG00000025405) #21	R3hdm2 (ENSMUSG00000025404) #22	Stac3 (ENSMUSG00000040287) #23	Ndufa4l2 (ENSMUSG00000040280) #24	Shmt2 (ENSMUSG00000025403) #25	Nxph4 (ENSMUSG00000040258) #26	Lrp1 (ENSMUSG00000040249) #27	Stat6 (ENSMUSG00000002147) #28	Nab2 (ENSMUSG00000025402) #29	Nemp1 (ENSMUSG00000040195) #30	Myo1a (ENSMUSG00000025401) #31	Tac2 (ENSMUSG00000025400) #32	Zbtb39 (ENSMUSG00000044617)	Gpr182 (ENSMUSG00000058396)	Rdh1 (ENSMUSG00000089789)	Rdh16f1 (ENSMUSG00000099009)	Rdh9 (ENSMUSG00000056148)
Mus_C	ANCESTRAL SPECIES	7	ENSGT00530000063603.A #7	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b.w.a.b	ENSGT00940000161764 #34	ENSGT00390000011466 #36
spretus	MODERN SPECIES	1	Os9 (MGP_SPRETEiJ_G0016707) #7	B4galnt1 (MGP_SPRETEiJ_G0016708) #8	Slc26a10 (MGP_SPRETEiJ_G0016709) #9	Arhgef25 (MGP_SPRETEiJ_G0016710) #10	Dtx3 (MGP_SPRETEiJ_G0016711) #11	Pip4k2c (MGP_SPRETEiJ_G0016712) #12	Kif5a (MGP_SPRETEiJ_G0016713) #13	Dctn2 (MGP_SPRETEiJ_G0016714) #14	Mbd6 (MGP_SPRETEiJ_G0016715) #15	Ddit3 (MGP_SPRETEiJ_G0016716) #16	Mars1 (MGP_SPRETEiJ_G0016717) #17	MGP_SPRETEiJ_G0016718 #18	Gli1 (MGP_SPRETEiJ_G0016719) #19	Inhbe (MGP_SPRETEiJ_G0016720) #20	Inhbc (MGP_SPRETEiJ_G0016721) #21	R3hdm2 (MGP_SPRETEiJ_G0016722) #22	Stac3 (MGP_SPRETEiJ_G0016723) #23	Ndufa4l2 (MGP_SPRETEiJ_G0016724) #24	Shmt2 (MGP_SPRETEiJ_G0016725) #25	Nxph4 (MGP_SPRETEiJ_G0016726) #26	Lrp1 (MGP_SPRETEiJ_G0016727) #27	Stat6 (MGP_SPRETEiJ_G0016728) #28	Nab2 (MGP_SPRETEiJ_G0016729) #29	Myo1a (MGP_SPRETEiJ_G0016731) #31	Tac2 (MGP_SPRETEiJ_G0016732) #32	Zbtb39 (MGP_SPRETEiJ_G0016733)	Gpr182 (MGP_SPRETEiJ_G0016734)	MGP_SPRETEiJ_G0016735	MGP_SPRETEiJ_G0016737	MGP_SPRETEiJ_G0016738	Sdr9c7 (MGP_SPRETEiJ_G0016739) #34
Steppe mouse	MODERN SPECIES	2596											ENSMSIG00000026302 #17	Arhgap9 (ENSMSIG00000026737) #18	Gli1 (ENSMSIG00000000166) #19	Inhbe (ENSMSIG00000000566) #20	Inhbc (ENSMSIG00000000587) #21	R3hdm2 (ENSMSIG00000000757) #22	Stac3 (ENSMSIG00000002644) #23	Ndufa4l2 (ENSMSIG00000002715) #24	Shmt2 (ENSMSIG00000002744) #25	Nxph4 (ENSMSIG00000002804) #26	Lrp1 (ENSMSIG00000002847) #27	Stat6 (ENSMSIG00000003202) #28	Nab2 (ENSMSIG00000003392) #29	Nemp1 (ENSMSIG00000003480) #30	Myo1a (ENSMSIG00000003896) #31	Tac2 (ENSMSIG00000019140) #32	Zbtb39 (ENSMSIG00000019165)	Gpr182 (ENSMSIG00000019172)	Rdh16f2 (ENSMSIG00000019184)
Ryukyu mouse	MODERN SPECIES	1	Os9 (MGP_CAROLIEiJ_G0015881) #7	B4galnt1 (MGP_CAROLIEiJ_G0015882) #8	Slc26a10 (MGP_CAROLIEiJ_G0015883) #9	Arhgef25 (MGP_CAROLIEiJ_G0015884) #10	Dtx3 (MGP_CAROLIEiJ_G0015885) #11	Pip4k2c (MGP_CAROLIEiJ_G0015886) #12	Kif5a (MGP_CAROLIEiJ_G0015887) #13	Dctn2 (MGP_CAROLIEiJ_G0015888) #14	Mbd6 (MGP_CAROLIEiJ_G0015889) #15	Ddit3 (MGP_CAROLIEiJ_G0015890) #16	Mars1 (MGP_CAROLIEiJ_G0015891) #17	MGP_CAROLIEiJ_G0015892 #18	Gli1 (MGP_CAROLIEiJ_G0015893) #19	Inhbe (MGP_CAROLIEiJ_G0015894) #20	Inhbc (MGP_CAROLIEiJ_G0015895) #21	R3hdm2 (MGP_CAROLIEiJ_G0015896) #22	Stac3 (MGP_CAROLIEiJ_G0015897) #23	Ndufa4l2 (MGP_CAROLIEiJ_G0015898) #24	Shmt2 (MGP_CAROLIEiJ_G0015899) #25	Nxph4 (MGP_CAROLIEiJ_G0015900) #26	Lrp1 (MGP_CAROLIEiJ_G0015901) #27	Stat6 (MGP_CAROLIEiJ_G0015902) #28	Nab2 (MGP_CAROLIEiJ_G0015903) #29	Nemp1 (MGP_CAROLIEiJ_G0015904) #30	Myo1a (MGP_CAROLIEiJ_G0015905) #31	Tac2 (MGP_CAROLIEiJ_G0015906) #32	Zbtb39 (MGP_CAROLIEiJ_G0015907)	Gpr182 (MGP_CAROLIEiJ_G0015908)	Rdh1 (MGP_CAROLIEiJ_G0015909)	MGP_CAROLIEiJ_G0015911	MGP_CAROLIEiJ_G0015912
Shrew mouse	MODERN SPECIES	22	Os9 (MGP_PahariEiJ_G0031204) #7	B4galnt1 (MGP_PahariEiJ_G0031203) #8	Slc26a10 (MGP_PahariEiJ_G0031202) #9	Arhgef25 (MGP_PahariEiJ_G0031201) #10	Dtx3 (MGP_PahariEiJ_G0031200) #11	Pip4k2c (MGP_PahariEiJ_G0031199) #12	Kif5a (MGP_PahariEiJ_G0031198) #13	Dctn2 (MGP_PahariEiJ_G0031197) #14	Mbd6 (MGP_PahariEiJ_G0031196) #15	Ddit3 (MGP_PahariEiJ_G0031195) #16	Mars1 (MGP_PahariEiJ_G0031194) #17	MGP_PahariEiJ_G0031193 #18	Gli1 (MGP_PahariEiJ_G0031192) #19	Inhbe (MGP_PahariEiJ_G0031191) #20	Inhbc (MGP_PahariEiJ_G0031190) #21	R3hdm2 (MGP_PahariEiJ_G0031189) #22	Stac3 (MGP_PahariEiJ_G0031188) #23	Ndufa4l2 (MGP_PahariEiJ_G0031187) #24	Shmt2 (MGP_PahariEiJ_G0031186) #25	Nxph4 (MGP_PahariEiJ_G0031185) #26	Lrp1 (MGP_PahariEiJ_G0031184) #27	Stat6 (MGP_PahariEiJ_G0031183) #28	Nab2 (MGP_PahariEiJ_G0031182) #29	Nemp1 (MGP_PahariEiJ_G0031181) #30	Myo1a (MGP_PahariEiJ_G0031180) #31	Tac2 (MGP_PahariEiJ_G0031179) #32	Zbtb39 (MGP_PahariEiJ_G0031178)	Gpr182 (MGP_PahariEiJ_G0031177)	MGP_PahariEiJ_G0031176	MGP_PahariEiJ_G0031175	MGP_PahariEiJ_G0031174
Rat	MODERN SPECIES	17	B4galnt1 (ENSRNOG00000004839) #8	Slc26a10 (ENSRNOG00000029465) #9	Arhgef25 (ENSRNOG00000005034) #10	Dtx3 (ENSRNOG00000005129) #11	Pip4k2c (ENSRNOG00000005138) #12	Kif5a (ENSRNOG00000005299) #13	ENSRNOG00000069110	Dctn2 (ENSRNOG00000025481) #14	Mbd6 (ENSRNOG00000006209) #15	Ddit3 (ENSRNOG00000006789) #16	Mars1 (ENSRNOG00000025459) #17	Arhgap9 (ENSRNOG00000006946) #18	Gli1 (ENSRNOG00000025120) #19	Inhbe (ENSRNOG00000007601) #20	Inhbc (ENSRNOG00000007700) #21	R3hdm2 (ENSRNOG00000007801) #22	Stac3 (ENSRNOG00000008050) #23	Ndufa4l2 (ENSRNOG00000031851) #24	Shmt2 (ENSRNOG00000008106) #25	Nxph4 (ENSRNOG00000025059) #26	Lrp1 (ENSRNOG00000025053) #27	Stat6 (ENSRNOG00000025023) #28	Nemp1 (ENSRNOG00000046492) #30	Nab2 (ENSRNOG00000008415) #29	Myo1a (ENSRNOG00000004177) #31	Tac3 (ENSRNOG00000004229) #32	Zbtb39 (ENSRNOG00000004306)	Gpr182 (ENSRNOG00000004311)	Rdh16 (ENSRNOG00000029651)	ENSRNOG00000067654 #33	Rdh7 (ENSRNOG00000004391)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1252	Os9 (ENSNGAG00000001426) #7	B4galnt1 (ENSNGAG00000010764) #8	Slc26a10 (ENSNGAG00000007258) #9	Arhgef25 (ENSNGAG00000017593) #10	Dtx3 (ENSNGAG00000005639) #11	Pip4k2c (ENSNGAG00000018449) #12	Kif5a (ENSNGAG00000006172) #13	Dctn2 (ENSNGAG00000020864) #14	Mbd6 (ENSNGAG00000004286) #15	ENSNGAG00000017151 #16	Mars1 (ENSNGAG00000018824) #17	Arhgap9 (ENSNGAG00000006996) #18	Gli1 (ENSNGAG00000013962) #19	Inhbe (ENSNGAG00000006351) #20	Inhbc (ENSNGAG00000009424) #21	R3hdm2 (ENSNGAG00000018800) #22	Stac3 (ENSNGAG00000013604) #23	Ndufa4l2 (ENSNGAG00000015083) #24	Shmt2 (ENSNGAG00000015828) #25	Nxph4 (ENSNGAG00000016424) #26	Lrp1 (ENSNGAG00000010123) #27	Stat6 (ENSNGAG00000005249) #28	Nab2 (ENSNGAG00000011502) #29	Nemp1 (ENSNGAG00000018516) #30	Myo1a (ENSNGAG00000010469) #31	Tac2 (ENSNGAG00000010463) #32	Zbtb39 (ENSNGAG00000011768)	Gpr182 (ENSNGAG00000012413)
Lesser Egyptian jerboa	MODERN SPECIES	42	ENSJJAG00000008739	B4galnt1 (ENSJJAG00000021764) #8	Slc26a10 (ENSJJAG00000000444) #9	Arhgef25 (ENSJJAG00000020641) #10	Dtx3 (ENSJJAG00000015820) #11	ENSJJAG00000016286 #12	Kif5a (ENSJJAG00000018332) #13	Dctn2 (ENSJJAG00000005539) #14	ENSJJAG00000011275 ##15	Ddit3 (ENSJJAG00000011845) #16	Mars1 (ENSJJAG00000018827) #17	ENSJJAG00000010582 #18	Gli1 (ENSJJAG00000005790) #19	Inhbe (ENSJJAG00000005854) #20	Inhbc (ENSJJAG00000024406) #21	R3hdm2 (ENSJJAG00000010001) #22	Stac3 (ENSJJAG00000004686) #23	Ndufa4l2 (ENSJJAG00000022945) #24	Shmt2 (ENSJJAG00000006620) #25	Nxph4 (ENSJJAG00000005486) #26	Lrp1 (ENSJJAG00000024081) #27	Stat6 (ENSJJAG00000024129) #28	Nab2 (ENSJJAG00000016380) #29	Nemp1 (ENSJJAG00000020038) #30	Myo1a (ENSJJAG00000012576) #31	Tac2 (ENSJJAG00000015356) #32	Sdr9c7 (ENSJJAG00000013857) #34	Prim1 (ENSJJAG00000016717) #36	ENSJJAG00000021261 #37	ENSJJAG00000021434	Baz2a (ENSJJAG00000009782)
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00860000136110	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT01090000261933	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b	ENSGT00940000161764 #34	ENSGT00940000162028 #33
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00530000063603.A #7	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b	ENSGT00940000161764 #34	ENSGT00940000162028 #33
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00530000063603.A #7	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b	ENSGT00940000161764 #34	ENSGT00940000162028 #33
Guinea pig	MODERN SPECIES	9	AGAP2 (ENSCPOG00000022267)	OS9 (ENSCPOG00000002667) #7	B4GALNT1 (ENSCPOG00000003202) #8	ENSCPOG00000033620 #9	ARHGEF25 (ENSCPOG00000020097) #10	PIP4K2C (ENSCPOG00000022071) #12	KIF5A (ENSCPOG00000012882) #13	DCTN2 (ENSCPOG00000012879) #14	MBD6 (ENSCPOG00000012873) #15	DDIT3 (ENSCPOG00000012871) #16	MARS1 (ENSCPOG00000012866) #17	ARHGAP9 (ENSCPOG00000014343) #18	GLI1 (ENSCPOG00000005414) #19	INHBE (ENSCPOG00000031115) #20	INHBC (ENSCPOG00000033593) #21	R3HDM2 (ENSCPOG00000009217) #22	STAC3 (ENSCPOG00000006200) #23	NDUFA4L2 (ENSCPOG00000035802) #24	SHMT2 (ENSCPOG00000012840) #25	LRP1 (ENSCPOG00000031730) #27	STAT6 (ENSCPOG00000012941) #28	NAB2 (ENSCPOG00000012940) #29	NEMP1 (ENSCPOG00000034078) #30	MYO1A (ENSCPOG00000012927) #31	TAC3 (ENSCPOG00000012924) #32	ZBTB39 (ENSCPOG00000035858)	GPR182 (ENSCPOG00000022599)	RDH16 (ENSCPOG00000002833)	SDR9C7 (ENSCPOG00000040671) #34	ENSCPOG00000002890 #33	ENSCPOG00000006822 #33
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00530000063603.A #7	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b	ENSGT00940000161764 #34	ENSGT00940000162028 #33
Degu	DUPLICATION
Degu	MODERN SPECIES	327	ARHGEF25 (ENSODEG00000002032) #10	DTX3 (ENSODEG00000001975) #11	PIP4K2C (ENSODEG00000001958) #12	KIF5A (ENSODEG00000001884) #13	DCTN2 (ENSODEG00000001844) #14	ENSODEG00000001830 #15	ENSODEG00000001814 #15	DDIT3 (ENSODEG00000001801) #16	MARS1 (ENSODEG00000001752) #17	ARHGAP9 (ENSODEG00000001619) #18	GLI1 (ENSODEG00000001558) #19	INHBE (ENSODEG00000001543) #20	INHBC (ENSODEG00000001532) #21	ENSODEG00000001520 #22	ENSODEG00000001512	ENSODEG00000001494 #22	ENSODEG00000001478	STAC3 (ENSODEG00000001424) #23	NDUFA4L2 (ENSODEG00000002560) #24	ENSODEG00000002538 #25	NXPH4 (ENSODEG00000002515) #26	LRP1 (ENSODEG00000002173) #27	STAT6 (ENSODEG00000001929) #28	NAB2 (ENSODEG00000001905) #29	NEMP1 (ENSODEG00000001860) #30	ENSODEG00000018785	MYO1A (ENSODEG00000001774) #31	TAC3 (ENSODEG00000001740) #32	GPR182 (ENSODEG00000001727)	ENSODEG00000001707	ENSODEG00000001681
Degu	MODERN SPECIES	327	B4GALNT1 (ENSODEG00000002156) #8	ENSODEG00000002108 #9	ARHGEF25 (ENSODEG00000002032) #10	DTX3 (ENSODEG00000001975) #11	PIP4K2C (ENSODEG00000001958) #12	KIF5A (ENSODEG00000001884) #13	DCTN2 (ENSODEG00000001844) #14	ENSODEG00000001830 #15	ENSODEG00000001814 #15	DDIT3 (ENSODEG00000001801) #16	MARS1 (ENSODEG00000001752) #17	ARHGAP9 (ENSODEG00000001619) #18	GLI1 (ENSODEG00000001558) #19	INHBE (ENSODEG00000001543) #20	INHBC (ENSODEG00000001532) #21	ENSODEG00000001520 #22	ENSODEG00000001512	ENSODEG00000001494 #22	ENSODEG00000001478	STAC3 (ENSODEG00000001424) #23	NDUFA4L2 (ENSODEG00000002560) #24	ENSODEG00000002538 #25	NXPH4 (ENSODEG00000002515) #26	LRP1 (ENSODEG00000002173) #27	STAT6 (ENSODEG00000001929) #28	NAB2 (ENSODEG00000001905) #29	NEMP1 (ENSODEG00000001860) #30	ENSODEG00000018785	MYO1A (ENSODEG00000001774) #31	TAC3 (ENSODEG00000001740) #32	GPR182 (ENSODEG00000001727)
Long-tailed chinchilla	MODERN SPECIES	165	OS9 (ENSCLAG00000010151) #7	B4GALNT1 (ENSCLAG00000009160) #8	ENSCLAG00000011703 #9	ARHGEF25 (ENSCLAG00000010120) #10	DTX3 (ENSCLAG00000008560) #11	PIP4K2C (ENSCLAG00000012549) #12	KIF5A (ENSCLAG00000011917) #13	DCTN2 (ENSCLAG00000010761) #14	MBD6 (ENSCLAG00000010083) #15	DDIT3 (ENSCLAG00000009376) #16	MARS1 (ENSCLAG00000012164) #17	ARHGAP9 (ENSCLAG00000015213) #18	GLI1 (ENSCLAG00000010833) #19	INHBE (ENSCLAG00000013199) #20	INHBC (ENSCLAG00000015051) #21	R3HDM2 (ENSCLAG00000011997) #22	STAC3 (ENSCLAG00000017371) #23	NDUFA4L2 (ENSCLAG00000017351) #24	SHMT2 (ENSCLAG00000014378) #25	NXPH4 (ENSCLAG00000016280) #26	LRP1 (ENSCLAG00000011741) #27	STAT6 (ENSCLAG00000011587) #28	NAB2 (ENSCLAG00000009310) #29	NEMP1 (ENSCLAG00000011169) #30	MYO1A (ENSCLAG00000009254) #31	TAC3 (ENSCLAG00000014146) #32	ZBTB39 (ENSCLAG00000012800)	GPR182 (ENSCLAG00000012163)	ENSCLAG00000009985	ENSCLAG00000012992 #33	ENSCLAG00000011030
Sciuridae	ANCESTRAL SPECIES	14	ENSGT01070000253775.a.d.b.j #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00860000136110	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT01090000261933	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b	ENSGT00940000161764 #34	ENSGT00390000011466 #36
Marmotini	ANCESTRAL SPECIES	4	ENSGT01070000253775.a.d.b.i #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00860000136110	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT01090000261933	ENSGT00390000006305.e #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b	ENSGT00940000161764 #34	ENSGT00390000011466 #36
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT01070000253775.a.d.b.i #9	ENSGT01070000253775.a.d.b.j #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00860000136110	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305.e #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000154118.b	ENSGT00940000161764 #34	ENSGT00390000011466 #36	ENSGT00440000033468.c.a #37
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	246	ENSSTOG00000014458	B4GALNT1 (ENSSTOG00000001087) #8	ENSSTOG00000020554 #9	ARHGEF25 (ENSSTOG00000001189) #10	DTX3 (ENSSTOG00000026285) #11	PIP4K2C (ENSSTOG00000001081) #12	KIF5A (ENSSTOG00000001164) #13	DCTN2 (ENSSTOG00000001156) #14	ENSSTOG00000001143 #15	ENSSTOG00000019858 #16	MARS1 (ENSSTOG00000001128) #17	ARHGAP9 (ENSSTOG00000001107) #18	GLI1 (ENSSTOG00000020366) #19	INHBE (ENSSTOG00000025066) #20	INHBC (ENSSTOG00000001097) #21	ENSSTOG00000013424 #22	STAC3 (ENSSTOG00000013409) #23	SHMT2 (ENSSTOG00000013388) #25	NXPH4 (ENSSTOG00000024980) #26	LRP1 (ENSSTOG00000013305) #27	STAT6 (ENSSTOG00000013280) #28	NAB2 (ENSSTOG00000020459) #29	NEMP1 (ENSSTOG00000012331) #30	MYO1A (ENSSTOG00000012304) #31	TAC3 (ENSSTOG00000012292) #32	ZBTB39 (ENSSTOG00000012284)	GPR182 (ENSSTOG00000020264)	RDH16 (ENSSTOG00000021331)	SDR9C7 (ENSSTOG00000026458) #34	PRIM1 (ENSSTOG00000009049) #36	ENSSTOG00000009028 #37
Squirrel	MODERN SPECIES	327								ENSSTOG00000024250	HLA-DQB2 (ENSSTOG00000020276)	ENSSTOG00000009632	ENSSTOG00000019974	ENSSTOG00000034168	HLA-DRA (ENSSTOG00000010426)	BTNL2 (ENSSTOG00000010424)	ENSSTOG00000023144	ENSSTOG00000030178 #22	ENSSTOG00000029574	ENSSTOG00000028306	GPSM3 (ENSSTOG00000029053)	PBX2 (ENSSTOG00000014748)	AGER (ENSSTOG00000014729)	RNF5 (ENSSTOG00000024478)	AGPAT1 (ENSSTOG00000008401)	EGFL8 (ENSSTOG00000029022)	PPT2 (ENSSTOG00000014721)	PRRT1 (ENSSTOG00000026158)	FKBPL (ENSSTOG00000014716)	ATF6B (ENSSTOG00000027684)	TNXB (ENSSTOG00000024569)	CYP21A2 (ENSSTOG00000014662)	ENSSTOG00000014639
Arctic ground squirrel	MODERN SPECIES	197	B4GALNT1 (ENSUPAG00010017501) #8	ENSUPAG00010017441 #9	ARHGEF25 (ENSUPAG00010017411) #10	DTX3 (ENSUPAG00010017398) #11	PIP4K2C (ENSUPAG00010017376) #12	ENSUPAG00010017369	KIF5A (ENSUPAG00010017316) #13	DCTN2 (ENSUPAG00010017296) #14	MBD6 (ENSUPAG00010017279) #15	ENSUPAG00010017275 #16	MARS1 (ENSUPAG00010017243) #17	GLI1 (ENSUPAG00010017222) #19	ARHGAP9 (ENSUPAG00010017207) #18	INHBE (ENSUPAG00010017202) #20	INHBC (ENSUPAG00010017199) #21	R3HDM2 (ENSUPAG00010016815) #22	STAC3 (ENSUPAG00010016748) #23	SHMT2 (ENSUPAG00010016720) #25	NXPH4 (ENSUPAG00010016712) #26	LRP1 (ENSUPAG00010016565) #27	STAT6 (ENSUPAG00010016543) #28	NAB2 (ENSUPAG00010016528) #29	NEMP1 (ENSUPAG00010016506) #30	MYO1A (ENSUPAG00010016464) #31	TAC3 (ENSUPAG00010016446) #32	ZBTB39 (ENSUPAG00010016442)	GPR182 (ENSUPAG00010016435)	RDH16 (ENSUPAG00010016427)	SDR9C7 (ENSUPAG00010016416) #34	PRIM1 (ENSUPAG00010016373) #36	ENSUPAG00010016347 ##37
Alpin marmot	MODERN SPECIES	11	ENSMMMG00000010726 #9	ARHGEF25 (ENSMMMG00000010788) #10	DTX3 (ENSMMMG00000010875) #11	PIP4K2C (ENSMMMG00000010891) #12	KIF5A (ENSMMMG00000010904) #13	ENSMMMG00000011019	DCTN2 (ENSMMMG00000011027) #14	MBD6 (ENSMMMG00000011054) #15	ENSMMMG00000011091	ENSMMMG00000011094 #16	MARS1 (ENSMMMG00000011099) #17	ARHGAP9 (ENSMMMG00000011136) #18	GLI1 (ENSMMMG00000011156) #19	INHBE (ENSMMMG00000011176) #20	INHBC (ENSMMMG00000011180) #21	R3HDM2 (ENSMMMG00000011206) #22	STAC3 (ENSMMMG00000012741) #23	NDUFA4L2 (ENSMMMG00000012770) #24	ENSMMMG00000012783	SHMT2 (ENSMMMG00000012788) #25	NXPH4 (ENSMMMG00000012812) #26	LRP1 (ENSMMMG00000012817) #27	STAT6 (ENSMMMG00000012942) #28	NAB2 (ENSMMMG00000012959) #29	NEMP1 (ENSMMMG00000012998) #30	MYO1A (ENSMMMG00000013029) #31	TAC3 (ENSMMMG00000013065) #32	ZBTB39 (ENSMMMG00000013072)	GPR182 (ENSMMMG00000013074)	RDH16 (ENSMMMG00000013078)	SDR9C7 (ENSMMMG00000013089) #34
Eurasian red squirrel	MODERN SPECIES	14	B4GALNT1 (ENSSVLG00005014897) #8	ENSSVLG00005014760 #9	ENSSVLG00005014611 #9	ARHGEF25 (ENSSVLG00005014310) #10	DTX3 (ENSSVLG00005014198) #11	PIP4K2C (ENSSVLG00005014089) #12	KIF5A (ENSSVLG00005013715) #13	DCTN2 (ENSSVLG00005013297) #14	MBD6 (ENSSVLG00005013192) #15	DDIT3 (ENSSVLG00005013130) #16	MARS1 (ENSSVLG00005012921) #17	ARHGAP9 (ENSSVLG00005011907) #18	GLI1 (ENSSVLG00005011547) #19	INHBE (ENSSVLG00005011485) #20	INHBC (ENSSVLG00005011429) #21	R3HDM2 (ENSSVLG00005011028) #22	STAC3 (ENSSVLG00005010688) #23	NDUFA4L2 (ENSSVLG00005010637) #24	SHMT2 (ENSSVLG00005010562) #25	NXPH4 (ENSSVLG00005010530) #26	LRP1 (ENSSVLG00005009995) #27	STAT6 (ENSSVLG00005009880) #28	NAB2 (ENSSVLG00005009807) #29	NEMP1 (ENSSVLG00005009668) #30	MYO1A (ENSSVLG00005009487) #31	TAC3 (ENSSVLG00005009429) #32	ZBTB39 (ENSSVLG00005009416)	GPR182 (ENSSVLG00005009407)	RDH16 (ENSSVLG00005009375)	ENSSVLG00005009344 #34	ENSSVLG00005009281 #34
Lagomorpha	ANCESTRAL SPECIES	87	ENSGT00530000063603.A #7	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722	ENSGT00940000154307.D	ENSGT00940000162028 #33	ENSGT00940000154118.b	ENSGT00940000161764 #34	ENSGT00390000011466 #36
Rabbit	MODERN SPECIES	447	OS9 (ENSOCUG00000024515) #7	B4GALNT1 (ENSOCUG00000014121) #8	ENSOCUG00000014113 #9	DTX3 (ENSOCUG00000000915) #11	PIP4K2C (ENSOCUG00000000916) #12	ENSOCUG00000031292	KIF5A (ENSOCUG00000011273) #13	DCTN2 (ENSOCUG00000011262) #14	MBD6 (ENSOCUG00000011255) #15	DDIT3 (ENSOCUG00000023877) #16	MARS1 (ENSOCUG00000007373) #17	ARHGAP9 (ENSOCUG00000022807) #18	GLI1 (ENSOCUG00000011128) #19	INHBE (ENSOCUG00000007382) #20	INHBC (ENSOCUG00000007380) #21	R3HDM2 (ENSOCUG00000013258) #22	STAC3 (ENSOCUG00000013251) #23	NDUFA4L2 (ENSOCUG00000023263) #24	SHMT2 (ENSOCUG00000013242) #25	ENSOCUG00000037050	STAT6 (ENSOCUG00000007929) #28	NAB2 (ENSOCUG00000024399) #29	NEMP1 (ENSOCUG00000013180) #30	MYO1A (ENSOCUG00000001335) #31	ENSOCUG00000032767 #32	ZBTB39 (ENSOCUG00000002811)	GPR182 (ENSOCUG00000002813)	ENSOCUG00000032670	ENSOCUG00000011778	ENSOCUG00000033629 #33	ENSOCUG00000002732
Pika	MODERN SPECIES	3079																R3HDM2 (ENSOPRG00000013670) #22	NDUFA4L2 (ENSOPRG00000013661) #24	SHMT2 (ENSOPRG00000013637) #25	LRP1 (ENSOPRG00000013447) #27	STAT6 (ENSOPRG00000013409) #28	NAB2 (ENSOPRG00000013398) #29	NEMP1 (ENSOPRG00000013379) #30	ENSOPRG00000013323 #31	ENSOPRG00000013302 #32	ZBTB39 (ENSOPRG00000013298)	GPR182 (ENSOPRG00000013260)