Mus	ANCESTRAL SPECIES	23	ENSGT00530000063603.A #7	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722 #33	ENSGT00940000154307.D #34	ENSGT00940000154118.b.w.b #35	ENSGT00940000154118.b.w.a.a ##37	ENSGT00940000154118.b.w.a.b ##37
Mus_A	ANCESTRAL SPECIES	11	ENSGT00530000063603.A #7	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722 #33	ENSGT00940000154307.D #34	ENSGT00940000154118.b.w.b #35	ENSGT00940000154118.b.w.a.a ##37	ENSGT00940000154118.b.w.a.b ##37
Ryukyu mouse	MODERN SPECIES	1	Os9 (MGP_CAROLIEiJ_G0015881) #7	B4galnt1 (MGP_CAROLIEiJ_G0015882) #8	Slc26a10 (MGP_CAROLIEiJ_G0015883) #9	Arhgef25 (MGP_CAROLIEiJ_G0015884) #10	Dtx3 (MGP_CAROLIEiJ_G0015885) #11	Pip4k2c (MGP_CAROLIEiJ_G0015886) #12	Kif5a (MGP_CAROLIEiJ_G0015887) #13	Dctn2 (MGP_CAROLIEiJ_G0015888) #14	Mbd6 (MGP_CAROLIEiJ_G0015889) #15	Ddit3 (MGP_CAROLIEiJ_G0015890) #16	Mars1 (MGP_CAROLIEiJ_G0015891) #17	MGP_CAROLIEiJ_G0015892 #18	Gli1 (MGP_CAROLIEiJ_G0015893) #19	Inhbe (MGP_CAROLIEiJ_G0015894) #20	Inhbc (MGP_CAROLIEiJ_G0015895) #21	R3hdm2 (MGP_CAROLIEiJ_G0015896) #22	Stac3 (MGP_CAROLIEiJ_G0015897) #23	Ndufa4l2 (MGP_CAROLIEiJ_G0015898) #24	Shmt2 (MGP_CAROLIEiJ_G0015899) #25	Nxph4 (MGP_CAROLIEiJ_G0015900) #26	Lrp1 (MGP_CAROLIEiJ_G0015901) #27	Stat6 (MGP_CAROLIEiJ_G0015902) #28	Nab2 (MGP_CAROLIEiJ_G0015903) #29	Nemp1 (MGP_CAROLIEiJ_G0015904) #30	Myo1a (MGP_CAROLIEiJ_G0015905) #31	Tac2 (MGP_CAROLIEiJ_G0015906) #32	Zbtb39 (MGP_CAROLIEiJ_G0015907) #33	Gpr182 (MGP_CAROLIEiJ_G0015908) #34	Rdh1 (MGP_CAROLIEiJ_G0015909) #35	MGP_CAROLIEiJ_G0015911 #36	MGP_CAROLIEiJ_G0015912 #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00530000063603.A #7	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722 #33	ENSGT00940000154307.D #34	ENSGT00940000154118.b.w.b #35	ENSGT00940000154118.b.w.a.a ##37	ENSGT00940000154118.b.w.a.b ##37
Mouse	MODERN SPECIES	1	B4galnt1 (ENSMUSG00000006731) #8	Slc26a10 (ENSMUSG00000040441) #9	Arhgef25 (ENSMUSG00000019467) #10	Dtx3 (ENSMUSG00000040415) #11	Pip4k2c (ENSMUSG00000025417) #12	Kif5a (ENSMUSG00000074657) #13	Dctn2 (ENSMUSG00000025410) #14	Mbd6 (ENSMUSG00000025409) #15	Ddit3 (ENSMUSG00000025408) #16	Ddit3 (ENSMUSG00000116429)	Mars1 (ENSMUSG00000040354) #17	Arhgap9 (ENSMUSG00000040345) #18	Gli1 (ENSMUSG00000025407) #19	Inhbe (ENSMUSG00000047492) #20	Inhbc (ENSMUSG00000025405) #21	R3hdm2 (ENSMUSG00000025404) #22	Stac3 (ENSMUSG00000040287) #23	Ndufa4l2 (ENSMUSG00000040280) #24	Shmt2 (ENSMUSG00000025403) #25	Nxph4 (ENSMUSG00000040258) #26	Lrp1 (ENSMUSG00000040249) #27	Stat6 (ENSMUSG00000002147) #28	Nab2 (ENSMUSG00000025402) #29	Nemp1 (ENSMUSG00000040195) #30	Myo1a (ENSMUSG00000025401) #31	Tac2 (ENSMUSG00000025400) #32	Zbtb39 (ENSMUSG00000044617) #33	Gpr182 (ENSMUSG00000058396) #34	Rdh1 (ENSMUSG00000089789) #35	Rdh16f1 (ENSMUSG00000099009)	Rdh9 (ENSMUSG00000056148) ##37
Mus_C	ANCESTRAL SPECIES	7	ENSGT00530000063603.A #7	ENSGT00390000006679.a #8	ENSGT01070000253775.a.d.b #9	ENSGT00940000160422 #10	ENSGT00940000161404 #11	ENSGT00940000156890.a.a #12	ENSGT00940000159439 #13	ENSGT00390000003427 #14	ENSGT00530000064137.a.a #15	ENSGT00390000006305 #16	ENSGT00550000075017 #17	ENSGT00950000182860.a.b.a #18	ENSGT00940000160235 #19	ENSGT00940000162107 #20	ENSGT00940000160065 #21	ENSGT00940000155609 #22	ENSGT00950000183092.a #23	ENSGT00940000161040 #24	ENSGT00390000002762.a.a #25	ENSGT00950000182883.b.a.b #26	ENSGT00940000157899.b #27	ENSGT01080000257420.C.b.a #28	ENSGT00390000006330.a.b #29	ENSGT00390000002174.a #30	ENSGT00940000160660 #31	ENSGT00390000000335 #32	ENSGT00940000160722 #33	ENSGT00940000154307.D #34	ENSGT00940000154118.b.w.a.b ##37	ENSGT00940000161764	ENSGT00390000011466
spretus	MODERN SPECIES	1	Os9 (MGP_SPRETEiJ_G0016707) #7	B4galnt1 (MGP_SPRETEiJ_G0016708) #8	Slc26a10 (MGP_SPRETEiJ_G0016709) #9	Arhgef25 (MGP_SPRETEiJ_G0016710) #10	Dtx3 (MGP_SPRETEiJ_G0016711) #11	Pip4k2c (MGP_SPRETEiJ_G0016712) #12	Kif5a (MGP_SPRETEiJ_G0016713) #13	Dctn2 (MGP_SPRETEiJ_G0016714) #14	Mbd6 (MGP_SPRETEiJ_G0016715) #15	Ddit3 (MGP_SPRETEiJ_G0016716) #16	Mars1 (MGP_SPRETEiJ_G0016717) #17	MGP_SPRETEiJ_G0016718 #18	Gli1 (MGP_SPRETEiJ_G0016719) #19	Inhbe (MGP_SPRETEiJ_G0016720) #20	Inhbc (MGP_SPRETEiJ_G0016721) #21	R3hdm2 (MGP_SPRETEiJ_G0016722) #22	Stac3 (MGP_SPRETEiJ_G0016723) #23	Ndufa4l2 (MGP_SPRETEiJ_G0016724) #24	Shmt2 (MGP_SPRETEiJ_G0016725) #25	Nxph4 (MGP_SPRETEiJ_G0016726) #26	Lrp1 (MGP_SPRETEiJ_G0016727) #27	Stat6 (MGP_SPRETEiJ_G0016728) #28	Nab2 (MGP_SPRETEiJ_G0016729) #29	Myo1a (MGP_SPRETEiJ_G0016731) #31	Tac2 (MGP_SPRETEiJ_G0016732) #32	Zbtb39 (MGP_SPRETEiJ_G0016733) #33	Gpr182 (MGP_SPRETEiJ_G0016734) #34	MGP_SPRETEiJ_G0016735 ##37	MGP_SPRETEiJ_G0016737 #37	MGP_SPRETEiJ_G0016738 ##37	Sdr9c7 (MGP_SPRETEiJ_G0016739)
Steppe mouse	MODERN SPECIES	2596											ENSMSIG00000026302 #17	Arhgap9 (ENSMSIG00000026737) #18	Gli1 (ENSMSIG00000000166) #19	Inhbe (ENSMSIG00000000566) #20	Inhbc (ENSMSIG00000000587) #21	R3hdm2 (ENSMSIG00000000757) #22	Stac3 (ENSMSIG00000002644) #23	Ndufa4l2 (ENSMSIG00000002715) #24	Shmt2 (ENSMSIG00000002744) #25	Nxph4 (ENSMSIG00000002804) #26	Lrp1 (ENSMSIG00000002847) #27	Stat6 (ENSMSIG00000003202) #28	Nab2 (ENSMSIG00000003392) #29	Nemp1 (ENSMSIG00000003480) #30	Myo1a (ENSMSIG00000003896) #31	Tac2 (ENSMSIG00000019140) #32	Zbtb39 (ENSMSIG00000019165) #33	Gpr182 (ENSMSIG00000019172) #34	Rdh16f2 (ENSMSIG00000019184) ##37
Shrew mouse	MODERN SPECIES	22	Os9 (MGP_PahariEiJ_G0031204) #7	B4galnt1 (MGP_PahariEiJ_G0031203) #8	Slc26a10 (MGP_PahariEiJ_G0031202) #9	Arhgef25 (MGP_PahariEiJ_G0031201) #10	Dtx3 (MGP_PahariEiJ_G0031200) #11	Pip4k2c (MGP_PahariEiJ_G0031199) #12	Kif5a (MGP_PahariEiJ_G0031198) #13	Dctn2 (MGP_PahariEiJ_G0031197) #14	Mbd6 (MGP_PahariEiJ_G0031196) #15	Ddit3 (MGP_PahariEiJ_G0031195) #16	Mars1 (MGP_PahariEiJ_G0031194) #17	MGP_PahariEiJ_G0031193 #18	Gli1 (MGP_PahariEiJ_G0031192) #19	Inhbe (MGP_PahariEiJ_G0031191) #20	Inhbc (MGP_PahariEiJ_G0031190) #21	R3hdm2 (MGP_PahariEiJ_G0031189) #22	Stac3 (MGP_PahariEiJ_G0031188) #23	Ndufa4l2 (MGP_PahariEiJ_G0031187) #24	Shmt2 (MGP_PahariEiJ_G0031186) #25	Nxph4 (MGP_PahariEiJ_G0031185) #26	Lrp1 (MGP_PahariEiJ_G0031184) #27	Stat6 (MGP_PahariEiJ_G0031183) #28	Nab2 (MGP_PahariEiJ_G0031182) #29	Nemp1 (MGP_PahariEiJ_G0031181) #30	Myo1a (MGP_PahariEiJ_G0031180) #31	Tac2 (MGP_PahariEiJ_G0031179) #32	Zbtb39 (MGP_PahariEiJ_G0031178) #33	Gpr182 (MGP_PahariEiJ_G0031177) #34	MGP_PahariEiJ_G0031176 #35	MGP_PahariEiJ_G0031175 #35	MGP_PahariEiJ_G0031174 ##37