Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000156963.a.a #22
Otophysi	ANCESTRAL SPECIES	349						ENSGT01100000263545.a.b.c.b #12	ENSGT00490000043380.b #13	ENSGT00720000108866 #14	ENSGT00940000161040.b	ENSGT00950000183092.a.d.b #17	ENSGT00940000159439.a #18	ENSGT00990000205462	ENSGT00940000154129.hd #19	ENSGT00940000159006.c.b #20	ENSGT00390000009446 #21	ENSGT00940000156963.a.a #22
Characiphysae	ANCESTRAL SPECIES	186					ENSGT00940000164142 #10	ENSGT01100000263545.a.b.c.b #12	ENSGT00490000043380.b #13	ENSGT00720000108866 #14	ENSGT00940000161040.b	ENSGT00950000183092.a.d.b #17	ENSGT00940000159439.a #18	ENSGT00990000205462	ENSGT00940000154129.hd #19	ENSGT00940000159006.c.b #20	ENSGT00390000009446 #21	ENSGT00940000156963.a.a #22	ENSGT00530000064359.c.b.h #23	ENSGT00940000155946.c.a #24	ENSGT00940000154079.b.a #25	ENSGT00940000159944 #26	ENSGT00940000157955.d.b #27	ENSGT00940000154374.a	ENSGT00940000156611.m.a
Channel catfish	MODERN SPECIES	24	ENSIPUG00000024881 #7	polb (ENSIPUG00000024873) #8	ENSIPUG00000024871 #9	ENSIPUG00000024868 #10	ENSIPUG00000024861 #11	ENSIPUG00000024859 #12	slc32a1 (ENSIPUG00000024855) #13	actr5 (ENSIPUG00000024841) #14	ENSIPUG00000024840 #15	cd63 (ENSIPUG00000024837) #16	stac3 (ENSIPUG00000024832) #17	Kif5a (ENSIPUG00000024824) #18	pcbp2 (ENSIPUG00000024819) #19	map3k12 (ENSIPUG00000024813) #20	AAAS (ENSIPUG00000024808) #21	ENSIPUG00000024802 #22	si:dkey-56i24.1 (ENSIPUG00000024783) #23	Angptl2 (ENSIPUG00000024781) #24	ralgps1 (ENSIPUG00000024769) #25	zbtb34 (ENSIPUG00000024765) #26	lmx1b (ENSIPUG00000024750) #27	ENSIPUG00000024748 #28	ENSIPUG00000024740 #29	ENSIPUG00000024736 #30	rabl2 (ENSIPUG00000024726) #31	ENSIPUG00000024722 #32	pbx3 (ENSIPUG00000024704) #33	ctu1 (ENSIPUG00000024664) #34	upb1 (ENSIPUG00000024648) #35	ENSIPUG00000024644 #36	ENSIPUG00000024639 #37
Characiphysae_b	ANCESTRAL SPECIES	189					ENSGT00940000164142 #10	ENSGT01100000263545.a.b.c.b #12	ENSGT00490000043380.b #13	ENSGT00720000108866 #14	ENSGT00940000161040.b	ENSGT00950000183092.a.d.b #17	ENSGT00940000159439.a #18	ENSGT00990000205462	ENSGT00940000154129.hd #19	ENSGT00940000159006.c.b #20	ENSGT00390000009446 #21	ENSGT00940000156963.a.a #22	ENSGT00530000064359.c.b.h #23	ENSGT00940000155946.c.a #24	ENSGT00940000154079.b.a #25	ENSGT00940000159944 #26	ENSGT00940000157955.d.b #27	ENSGT00940000154374.a	ENSGT00940000156611.m.a
Characoidei	ANCESTRAL SPECIES	200										ENSGT00950000183092.a.d.b #17	ENSGT00940000159439.a #18	ENSGT00990000205462	ENSGT00940000154129.hd #19	ENSGT00940000159006.c.b #20	ENSGT00390000009446 #21	ENSGT00940000156963.a.a #22	ENSGT00530000064359.c.b.h #23	ENSGT00940000154079.b.a #25	ENSGT00940000155946.c.a #24	ENSGT00940000159944 #26	ENSGT00940000157955.d.b #27	ENSGT00940000155945.i.b	ENSGT00940000163762.b #33	ENSGT00940000156611.n	ENSGT00390000016543.c	ENSGT00940000165688	ENSGT00390000003282.A	ENSGT00390000014879.c.a.a.b	ENSGT00390000000224	ENSGT00940000154966.ab.b	ENSGT00940000160943
Red-bellied piranha	MODERN SPECIES	958															aaas (ENSPNAG00000000868) #21	ENSPNAG00000000899 #22	si:dkey-56i24.1 (ENSPNAG00000008343) #23	ralgps1 (ENSPNAG00000000941) #25	si:dkey-191c17.2 (ENSPNAG00000008376)	zbtb34 (ENSPNAG00000008386) #26
Mexicana tetra	MODERN SPECIES	21	mtor (ENSAMXG00000014520)	angptl7 (ENSAMXG00000014537)	qars1 (ENSAMXG00000014553)	ogg1 (ENSAMXG00000033292)	ENSAMXG00000039341	ENSAMXG00000040516	ENSAMXG00000032196	ENSAMXG00000036379	ENSAMXG00000014611	ENSAMXG00000029204	ENSAMXG00000032514	ENSAMXG00000019945	pcbp2 (ENSAMXG00000037819) #19	map3k12 (ENSAMXG00000014645) #20	aaas (ENSAMXG00000014649) #21	ENSAMXG00000014650 #22	si:dkey-56i24.1 (ENSAMXG00000034002) #23	ralgps1 (ENSAMXG00000014668) #25	angptl2b (ENSAMXG00000014684) #24	zbtb34 (ENSAMXG00000026343) #26	lmx1bb (ENSAMXG00000041930) #27	mvb12bb (ENSAMXG00000041643)	ENSAMXG00000034680	ENSAMXG00000041410	ENSAMXG00000040610 #33	gapvd1 (ENSAMXG00000001364)	ENSAMXG00000026054	syn1 (ENSAMXG00000001381)	ENSAMXG00000040426	vgll4l (ENSAMXG00000038029)	slc20a1a (ENSAMXG00000005646)
Electric eel	MODERN SPECIES	142				ENSEEEG00000014372	ENSEEEG00000014361 #10	ENSEEEG00000014355 #12	SLC32A1 (ENSEEEG00000014353) #13	actr5 (ENSEEEG00000014351) #14	ENSEEEG00000014349	stac3 (ENSEEEG00000014347) #17	ENSEEEG00000014344	kif5aa (ENSEEEG00000014340) #18	pcbp2 (ENSEEEG00000014220) #19	map3k12 (ENSEEEG00000014212) #20	aaas (ENSEEEG00000014185) #21	ENSEEEG00000014165 #22	angptl2b (ENSEEEG00000014150) #24	ralgps1 (ENSEEEG00000014145) #25	zbtb34 (ENSEEEG00000014141) #26	lmx1bb (ENSEEEG00000014125) #27	pbx3b (ENSEEEG00000014117)	gapvd1 (ENSEEEG00000014113)
Cyprinoidei	ANCESTRAL SPECIES	199										ENSGT00940000161040.b	ENSGT00950000183092.a.d.b #17	ENSGT00940000159439.a #18	ENSGT00940000154129.hd #19	ENSGT00940000159006.c.b #20	ENSGT00390000009446 #21	ENSGT00940000156963.a.a #22	ENSGT00530000063509.B	ENSGT00940000155232.t.a.b.a	ENSGT00940000166809	ENSGT00940000155232.t.b.b	ENSGT00390000011821
Cyprininae	ANCESTRAL SPECIES	770														ENSGT00950000183092.a.d.b #17	ENSGT00940000159439.a.c #18	ENSGT00940000156963.a.a #22	ENSGT01030000234859.c	ENSGT00690000101915.i.a	ENSGT00950000183078.a	ENSGT00940000154389.a.r.a.a	ENSGT00940000158406.y	ENSGT00940000155063.c.a.c	ENSGT01090000259985.b.b.b.a.a.a
Goldfish	MODERN SPECIES	27												ENSCARG00000064726	stac3 (ENSCARG00000064704) #17	kif5aa (ENSCARG00000061667) #18	map3k12 (ENSCARG00000060481) #20	ENSCARG00000060430 #22	SLC5A7 (ENSCARG00000060301)	ENSCARG00000060068	ENSCARG00000060039	il10rb (ENSCARG00000059996)	ENSCARG00000048942	ENSCARG00000048362	ENSCARG00000048344	ENSCARG00000048332	ENSCARG00000048318	ihha (ENSCARG00000048285)	mitd1 (ENSCARG00000048258)	ENSCARG00000048229	creg2 (ENSCARG00000048190)	MGAT4A (ENSCARG00000047479)	coa5 (ENSCARG00000047421)
Cyprininae_a	ANCESTRAL SPECIES	643																ENSGT00940000156963.a.a #22	ENSGT01030000234859.c	ENSGT00690000101915.i.a	ENSGT00950000183078.a	ENSGT00940000154389.a.r.a.a	ENSGT00940000158406.y	ENSGT00940000155063.c.a.c	ENSGT01090000259985.b.b.b.a.a.a
Common carp reference	MODERN SPECIES	41	ENSCCRG00000011194 #14	ENSCCRG00000074698	ENSCCRG00000063746	ENSCCRG00000031102	ENSCCRG00000025564	ENSCCRG00000072006	ENSCCRG00000045990	ENSCCRG00000019314 #17	ENSCCRG00000058595	ENSCCRG00000018729 #18	ENSCCRG00000046669 #19	ENSCCRG00000067204	ENSCCRG00000027701	ENSCCRG00000022944 #20	ENSCCRG00000057367	ENSCCRG00000032536 #22	ENSCCRG00000061282	ENSCCRG00000061497	ENSCCRG00000026533	ENSCCRG00000030939	ENSCCRG00000035630	ENSCCRG00000052914	ENSCCRG00000030886	ENSCCRG00000039479	ENSCCRG00000006462	ENSCCRG00000060471
Golden-line barbel	MODERN SPECIES	1984																ENSSGRG00000017549 #22	ENSSGRG00000017650
Zebrafish	MODERN SPECIES	24	ENSDARG00000099799	igsf3l (ENSDARG00000104716)	ENSDARG00000098461	bzw1b (ENSDARG00000099148)	ENSDARG00000099207 #10	zgc:158320 (ENSDARG00000099373)	ENSDARG00000099980 #12	actr5 (ENSDARG00000098235) #14	NDUFA4L2 (ENSDARG00000103114)	stac3 (ENSDARG00000098883) #17	ENSDARG00000100407	kif5aa (ENSDARG00000098936) #18	pcbp2 (ENSDARG00000099039) #19	map3k12 (ENSDARG00000103651) #20	aaas (ENSDARG00000102274) #21	ENSDARG00000114697 #22	plbd2 (ENSDARG00000114245)	ENSDARG00000099598	ENSDARG00000105042	cldn10b (ENSDARG00000104528)	ENSDARG00000103337	ENSDARG00000100150	SLC5A7 (ENSDARG00000102336)	ENSDARG00000110024	lims2 (ENSDARG00000014976)	RANBP2 (ENSDARG00000093125)	il10rb (ENSDARG00000078042)	hycc2 (ENSDARG00000101696)	MAP4K4 (ENSDARG00000098670)	ENSDARG00000100461
Clupeiformes	ANCESTRAL SPECIES	154	ENSGT00720000108866 #14	ENSGT00490000043380.b #13	ENSGT01100000263545.a.b.c.b #12	ENSGT00940000167348	ENSGT00940000164142 #10	ENSGT00940000156300.l	ENSGT01090000261049	ENSGT00940000155769.`b.a	ENSGT00390000005874.i	ENSGT00940000155514.d	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b.b	ENSGT01020000230394.e.b.a	ENSGT00940000155189.pb.b	ENSGT00390000016951	ENSGT00940000156963.a.a #22	ENSGT00390000006813	ENSGT00940000164642	ENSGT00940000163342.a.a.a	ENSGT00730000111360.a	ENSGT00640000091554	ENSGT00940000158393	ENSGT00940000161798	ENSGT00390000007075	ENSGT00940000163342.a.a.b.e	ENSGT00940000163873.c.a	ENSGT00940000155615.i.b	ENSGT00940000154583.f	ENSGT00390000017131	ENSGT00950000182846.a.a.b.b	ENSGT00940000161090.B.c.b.b.b
Atlantic herring	MODERN SPECIES		actr5 (ENSCHAG00000026751) #14	SLC32A1 (ENSCHAG00000026750) #13	ENSCHAG00000026748 #12	atp5f1e (ENSCHAG00000026747)	ENSCHAG00000026729 #10	ENSCHAG00000026723	GNAS (ENSCHAG00000026666)	VAPB (ENSCHAG00000026656)	DCAF1 (ENSCHAG00000026637)	DOCK3 (ENSCHAG00000025595)	IFT122 (ENSCHAG00000024796)	exorh (ENSCHAG00000024744)	PLXND1 (ENSCHAG00000024489)	TMCC1 (ENSCHAG00000024474)	trh (ENSCHAG00000024472)	ENSCHAG00000024394 #22	cs (ENSCHAG00000024358)	ENSCHAG00000024341	ENSCHAG00000024336	ogg1 (ENSCHAG00000024331)	nr2c2 (ENSCHAG00000024228)	ENSCHAG00000024212	wdr46 (ENSCHAG00000024207)	sult1st3 (ENSCHAG00000024205)	ssuh2rs1 (ENSCHAG00000024187)	grip2a (ENSCHAG00000023254)	slc6a6a (ENSCHAG00000022868)	ABTB1 (ENSCHAG00000022805)	dnase1l4.1 (ENSCHAG00000022692)	ENSCHAG00000022674	ENSCHAG00000022665
Denticle herring	MODERN SPECIES	17	sun1b (ENSDCDG00000012310)	actr5 (ENSDCDG00000012348) #14	SLC32A1 (ENSDCDG00000012356) #13	ENSDCDG00000012366 #12	atp5f1e (ENSDCDG00000012392)	ENSDCDG00000012412 #10	GNAS (ENSDCDG00000012458)	ENSDCDG00000012506	VAPB (ENSDCDG00000012511)	DCAF1 (ENSDCDG00000012534)	IFT122 (ENSDCDG00000013175)	RHO (ENSDCDG00000016639)	PLXND1 (ENSDCDG00000016646)	TMCC1 (ENSDCDG00000016677)	ENSDCDG00000016678	ENSDCDG00000016690 #22	cs (ENSDCDG00000018730)	ENSDCDG00000020100	ENSDCDG00000020110	ogg1 (ENSDCDG00000020113)	nr2c2 (ENSDCDG00000020122)	B3GALT4 (ENSDCDG00000020152)	ENSDCDG00000020157	ENSDCDG00000020167	ENSDCDG00000020169	ENSDCDG00000020171	ENSDCDG00000020174	ENSDCDG00000020179	ssuh2rs1 (ENSDCDG00000020185)	grip2a (ENSDCDG00000020265)	ENSDCDG00000022389