Myomorpha	ANCESTRAL SPECIES	16	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.b.a.b.tb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056 #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00940000159576	ENSGT00390000002210.d
Muroidea	ANCESTRAL SPECIES	9	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.b.a.b.tb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056 #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33	ENSGT00390000013448.a.a #24	ENSGT00390000002970 #35	ENSGT00940000153463.b #36	ENSGT00940000154784.D.a.b #37
Muroidea_A	DUPLICATION
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.a #18	ENSGT00530000063402.b #19	ENSGT00390000010056.y #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #34
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.a #18	ENSGT00530000063402.b #19	ENSGT00390000010056.y #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #34
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.a #18	ENSGT00530000063402.b #19	ENSGT00390000010056.y #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #34
Golden Hamster	MODERN SPECIES	697	Ahctf1 (ENSMAUG00000007505) #7	ENSMAUG00000018123 #8	Cdc42bpa (ENSMAUG00000010864) #9	Coq8a (ENSMAUG00000016955) #10	Psen2 (ENSMAUG00000014629) #11	Itpkb (ENSMAUG00000013424) #12	Stum (ENSMAUG00000010054) #13	Parp1 (ENSMAUG00000008306) #14	Lin9 (ENSMAUG00000000458) #15	Mixl1 (ENSMAUG00000000244) #16	Acbd3 (ENSMAUG00000008514) #17	ENSMAUG00000019811 #18	Sde2 (ENSMAUG00000019326) #19	Lefty2 (ENSMAUG00000018742) #20	Pycr2 (ENSMAUG00000017705) #21	Lefty1 (ENSMAUG00000009066) #22	ENSMAUG00000007599 #23	ENSMAUG00000003804 #24	Nvl (ENSMAUG00000015157) #25	Cnih4 (ENSMAUG00000012691) #26	Wdr26 (ENSMAUG00000014280) #27	Cnih3 (ENSMAUG00000012379) #28	Ccdc121rt1 (ENSMAUG00000010926) #29	ENSMAUG00000014176 #30	Lbr (ENSMAUG00000012993) #31	Enah (ENSMAUG00000017836) #32	Srp9 (ENSMAUG00000017552) #33	Degs1 (ENSMAUG00000015951) #34	Fbxo28 (ENSMAUG00000017511) #35	Trp53bp2 (ENSMAUG00000016823) #36	Capn2 (ENSMAUG00000012201) #37
Chinese hamster chok1gshd	MODERN SPECIES	2	Kif28 (ENSCGRG00001022967)	Ahctf1 (ENSCGRG00001015843) #7	Cdc42bpa (ENSCGRG00001019928) #9	Coq8a (ENSCGRG00001022055) #10	Psen2 (ENSCGRG00001018733) #11	Itpkb (ENSCGRG00001024584) #12	Stum (ENSCGRG00001022399) #13	Parp1 (ENSCGRG00001020559) #14	Lin9 (ENSCGRG00001014165) #15	Mixl1 (ENSCGRG00001012768) #16	Acbd3 (ENSCGRG00001005103) #17	ENSCGRG00001021129 ##18	Sde2 (ENSCGRG00001018567) #19	Lefty2 (ENSCGRG00001017440) #20	Pycr2 (ENSCGRG00001024961) #21	Lefty1 (ENSCGRG00001024886) #22	Tmem63a (ENSCGRG00001022346)	Ephx1 (ENSCGRG00001023454)	9130409I23Rik (ENSCGRG00001023435) #24	ENSCGRG00001016864 ##24	Nvl (ENSCGRG00001007917) #25	Cnih4 (ENSCGRG00001000385) #26	Wdr26 (ENSCGRG00001018374) #27	Cnih3 (ENSCGRG00001018492) #28	Ccdc121rt1 (ENSCGRG00001005549) #29	ENSCGRG00001009826 #30	Lbr (ENSCGRG00001022299) #31	Enah (ENSCGRG00001013627) #32	Srp9 (ENSCGRG00001008910) #33	Vmn1r1 (ENSCGRG00001010250)	Degs1 (ENSCGRG00001002610) #34
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.a #18	ENSGT00530000063402.b #19	ENSGT00390000010056.y #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #34
Prairie vole	MODERN SPECIES	14	Kif28 (ENSMOCG00000022053)	Ahctf1 (ENSMOCG00000004774) #7	Cdc42bpa (ENSMOCG00000019771) #9	Coq8a (ENSMOCG00000022622) #10	Psen2 (ENSMOCG00000021854) #11	Itpkb (ENSMOCG00000002630) #12	Stum (ENSMOCG00000020677) #13	Parp1 (ENSMOCG00000014315) #14	Lin9 (ENSMOCG00000021496) #15	Mixl1 (ENSMOCG00000022650) #16	Acbd3 (ENSMOCG00000021409) #17	ENSMOCG00000017501 #18	Sde2 (ENSMOCG00000003863) #19	Lefty2 (ENSMOCG00000020511) #20	Pycr2 (ENSMOCG00000000522) #21	Lefty1 (ENSMOCG00000013803) #22	Tmem63a (ENSMOCG00000010850)	ENSMOCG00000002922	9130409I23Rik (ENSMOCG00000021672) #24	Nvl (ENSMOCG00000017466) #25	Cnih4 (ENSMOCG00000014531) #26	Wdr26 (ENSMOCG00000018920) #27	Cnih3 (ENSMOCG00000011071) #28	ENSMOCG00000011930 #30	ENSMOCG00000009557	Enah (ENSMOCG00000016095) #32	ENSMOCG00000004862	ENSMOCG00000019142	Srp9 (ENSMOCG00000012590) #33	Degs1 (ENSMOCG00000021480) #34	Fbxo28 (ENSMOCG00000006258) #35
Northern American deer mouse	MODERN SPECIES	2	ENSPEMG00000016591	Ahctf1 (ENSPEMG00000000305) #7	Cdc42bpa (ENSPEMG00000016582) #9	Coq8a (ENSPEMG00000010057) #10	Psen2 (ENSPEMG00000006562) #11	Itpkb (ENSPEMG00000000832) #12	Stum (ENSPEMG00000000087) #13	Parp1 (ENSPEMG00000020230) #14	Lin9 (ENSPEMG00000020176) #15	Mixl1 (ENSPEMG00000020007) #16	Acbd3 (ENSPEMG00000019971) #17	ENSPEMG00000019940 ##18	Sde2 (ENSPEMG00000001047) #19	Lefty2 (ENSPEMG00000018991) #20	Pycr2 (ENSPEMG00000018727) #21	Lefty1 (ENSPEMG00000026696) #22	Tmem63a (ENSPEMG00000016310)	ENSPEMG00000024494	ENSPEMG00000025705	9130409I23Rik (ENSPEMG00000011902) #24	ENSPEMG00000025337 ##24	Nvl (ENSPEMG00000001236) #25	Cnih4 (ENSPEMG00000012374) #26	Wdr26 (ENSPEMG00000010249) #27	Cnih3 (ENSPEMG00000008307) #28	Ccdc121rt1 (ENSPEMG00000029360) #29	Dnah14 (ENSPEMG00000025670) #30	Lbr (ENSPEMG00000022439) #31	Enah (ENSPEMG00000022874) #32	Srp9 (ENSPEMG00000022774) #33	Vmn1r1 (ENSPEMG00000030686)
Murinae	ANCESTRAL SPECIES	11	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.b.a.b.tb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #34
Mus	ANCESTRAL SPECIES	5	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.b.a.b.tb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #34
Mus_A	ANCESTRAL SPECIES	5	ENSGT00860000135936	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.b.a.b.tb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y.a.a #20	ENSGT00390000010056.y.a.b #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #34
Mus_B	ANCESTRAL SPECIES	7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.a.yb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y.a.a #20	ENSGT00390000010056.y.a.b #20	ENSGT00390000010056.y.b #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #34
Mouse	MODERN SPECIES		Kif28 (ENSMUSG00000087236)	Ahctf1 (ENSMUSG00000026491) #7	Cdc42bpa (ENSMUSG00000026490) #9	Coq8a (ENSMUSG00000026489) #10	Psen2 (ENSMUSG00000010609) #11	Itpkb (ENSMUSG00000038855) #12	Stum (ENSMUSG00000053963) #13	Parp1 (ENSMUSG00000026496) #14	Lin9 (ENSMUSG00000058729) #15	Mixl1 (ENSMUSG00000026497) #16	Acbd3 (ENSMUSG00000026499) #17	H3f3a (ENSMUSG00000060743) ##18	Sde2 (ENSMUSG00000038806) #19	Lefty2 (ENSMUSG00000066652) #20	Pycr2 (ENSMUSG00000026520) #21	Lefty1 (ENSMUSG00000038793) #22	Tmem63a (ENSMUSG00000026519)	Ephx1 (ENSMUSG00000038776)	9130409I23Rik (ENSMUSG00000038768) #24	Nvl (ENSMUSG00000026516) #25	Cnih4 (ENSMUSG00000062169) #26	Wdr26 (ENSMUSG00000038733) #27	Cnih3 (ENSMUSG00000026514) #28	Ccdc121rt1 (ENSMUSG00000050625) #29	Dnah14 (ENSMUSG00000047369) #30	Lbr (ENSMUSG00000004880) #31	Enah (ENSMUSG00000022995) #32	Srp9 (ENSMUSG00000026511) #33	Vmn1r1 (ENSMUSG00000091013)	Degs1 (ENSMUSG00000038633) #34	Fbxo28 (ENSMUSG00000047539) #35
Mus_C	ANCESTRAL SPECIES	1	ENSGT00860000135936	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188.u #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.b.a.b.tb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y.a.a #20	ENSGT00390000010056.y.a.b #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #34
Steppe mouse	MODERN SPECIES	3304	Ahctf1 (ENSMSIG00000005983) #7	ENSMSIG00000006134	Cdc42bpa (ENSMSIG00000006204) #9	Coq8a (ENSMSIG00000007186) #10	Psen2 (ENSMSIG00000007254) #11	Itpkb (ENSMSIG00000007328) #12	Stum (ENSMSIG00000007366) #13	Parp1 (ENSMSIG00000007405) #14	ENSMSIG00000007488 #15	Mixl1 (ENSMSIG00000007539) #16	Acbd3 (ENSMSIG00000007560) #17	ENSMSIG00000007594 ##18	Sde2 (ENSMSIG00000007635) #19	Lefty2 (ENSMSIG00000007680) #20	Pycr2 (ENSMSIG00000007693) #21	Lefty1 (ENSMSIG00000007710) #22	Tmem63a (ENSMSIG00000007714)	Ephx1 (ENSMSIG00000007746)	ENSMSIG00000007797	ENSMSIG00000007826	9130409I23Rik (ENSMSIG00000007843) #24	ENSMSIG00000007861 ##24	Nvl (ENSMSIG00000007946) #25	ENSMSIG00000008071 #26	Wdr26 (ENSMSIG00000008106) #27	ENSMSIG00000008233	Cnih3 (ENSMSIG00000008251) #28	Ccdc121rt1 (ENSMSIG00000008319) #29	Dnah14 (ENSMSIG00000008331) #30	Lbr (ENSMSIG00000008545) #31	Enah (ENSMSIG00000008601) #32
Shrew mouse	MODERN SPECIES	18	Kif28 (MGP_PahariEiJ_G0028201)	MGP_PahariEiJ_G0028202 #7	MGP_PahariEiJ_G0028203	Cdc42bpa (MGP_PahariEiJ_G0028204) #9	Coq8a (MGP_PahariEiJ_G0028205) #10	Psen2 (MGP_PahariEiJ_G0028206) #11	Itpkb (MGP_PahariEiJ_G0028207) #12	Stum (MGP_PahariEiJ_G0028208) #13	MGP_PahariEiJ_G0028209 #14	Lin9 (MGP_PahariEiJ_G0028210) #15	Mixl1 (MGP_PahariEiJ_G0028211) #16	Acbd3 (MGP_PahariEiJ_G0028212) #17	MGP_PahariEiJ_G0028213 ##18	Sde2 (MGP_PahariEiJ_G0028214) #19	Lefty2 (MGP_PahariEiJ_G0028215) #20	MGP_PahariEiJ_G0028216 #22	Pycr2 (MGP_PahariEiJ_G0028217) #21	Tmem63a (MGP_PahariEiJ_G0028218)	MGP_PahariEiJ_G0028219	9130409I23Rik (MGP_PahariEiJ_G0028220) #24	Nvl (MGP_PahariEiJ_G0028221) #25	Cnih4 (MGP_PahariEiJ_G0028222) #26	Wdr26 (MGP_PahariEiJ_G0028223) #27	Cnih3 (MGP_PahariEiJ_G0028224) #28	Ccdc121rt1 (MGP_PahariEiJ_G0028225) #29	MGP_PahariEiJ_G0028226 #30	Lbr (MGP_PahariEiJ_G0028227) #31	Enah (MGP_PahariEiJ_G0028228) #32	Srp9 (MGP_PahariEiJ_G0028229) #33	Vmn1r1 (MGP_PahariEiJ_G0028230)	Degs1 (MGP_PahariEiJ_G0028231) #34
Rat	MODERN SPECIES	4	Kif28p (ENSRNOG00000050602)	Ahctf1 (ENSRNOG00000023541) #7	Cdc42bpa (ENSRNOG00000002841) #9	Coq8a (ENSRNOG00000043201) #10	Psen2 (ENSRNOG00000002879) #11	Itpkb (ENSRNOG00000002969) #12	Stum (ENSRNOG00000071066) #13	Parp1 (ENSRNOG00000003084) #14	Lin9 (ENSRNOG00000023304) #15	Mixl1 (ENSRNOG00000003176) #16	Acbd3 (ENSRNOG00000003185) #17	H3f3b (ENSRNOG00000003220) ##18	Sde2 (ENSRNOG00000003247) #19	Lefty2 (ENSRNOG00000060325) #20	Pycr2 (ENSRNOG00000003267) #21	Lefty1 (ENSRNOG00000003263) #22	Tmem63a (ENSRNOG00000003310)	Ephx1 (ENSRNOG00000003515)	LOC498300 (ENSRNOG00000050163) #24	RGD1564463 (ENSRNOG00000003601) ##24	Nvl (ENSRNOG00000003629) #25	Cnih4 (ENSRNOG00000003717) #26	Wdr26 (ENSRNOG00000003723) #27	Cnih3 (ENSRNOG00000022724) #28	Ccdc121rt (ENSRNOG00000022717) #29	Dnah14 (ENSRNOG00000070092) #30	Lbr (ENSRNOG00000052574) #31	Enah (ENSRNOG00000031934) #32	Srp9 (ENSRNOG00000003211) #33	Degs1 (ENSRNOG00000003223) #34	Fbxo28 (ENSRNOG00000000066) #35
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.a #18	ENSGT00530000063402.b #19	ENSGT00390000010056.y #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.a #18	ENSGT00530000063402.b #19	ENSGT00390000010056.y #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.a #18	ENSGT00530000063402.b #19	ENSGT00390000010056.y #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33
Golden Hamster	MODERN SPECIES	697	Sccpdh (ENSMAUG00000014050)	Kif28 (ENSMAUG00000011576)	Ahctf1 (ENSMAUG00000007505) #7	ENSMAUG00000018123 #8	Cdc42bpa (ENSMAUG00000010864) #9	Coq8a (ENSMAUG00000016955) #10	Psen2 (ENSMAUG00000014629) #11	Itpkb (ENSMAUG00000013424) #12	Stum (ENSMAUG00000010054) #13	Parp1 (ENSMAUG00000008306) #14	Lin9 (ENSMAUG00000000458) #15	Mixl1 (ENSMAUG00000000244) #16	Acbd3 (ENSMAUG00000008514) #17	ENSMAUG00000019811 #18	Sde2 (ENSMAUG00000019326) #19	Lefty2 (ENSMAUG00000018742) #20	Pycr2 (ENSMAUG00000017705) #21	Lefty1 (ENSMAUG00000009066) #22	ENSMAUG00000007599 #23	ENSMAUG00000003804 #24	Nvl (ENSMAUG00000015157) #25	Cnih4 (ENSMAUG00000012691) #26	Wdr26 (ENSMAUG00000014280) #27	Cnih3 (ENSMAUG00000012379) #28	Ccdc121rt1 (ENSMAUG00000010926) #29	ENSMAUG00000014176 #30	Lbr (ENSMAUG00000012993) #31	Enah (ENSMAUG00000017836) #32	Srp9 (ENSMAUG00000017552) #33	Degs1 (ENSMAUG00000015951) #34	Fbxo28 (ENSMAUG00000017511) #35
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001016196	ENSCGRG00001014096	Kif28 (ENSCGRG00001022967)	Ahctf1 (ENSCGRG00001015843) #7	Cdc42bpa (ENSCGRG00001019928) #9	Coq8a (ENSCGRG00001022055) #10	Psen2 (ENSCGRG00001018733) #11	Itpkb (ENSCGRG00001024584) #12	Stum (ENSCGRG00001022399) #13	Parp1 (ENSCGRG00001020559) #14	Lin9 (ENSCGRG00001014165) #15	Mixl1 (ENSCGRG00001012768) #16	Acbd3 (ENSCGRG00001005103) #17	ENSCGRG00001021129 ##18	Sde2 (ENSCGRG00001018567) #19	Lefty2 (ENSCGRG00001017440) #20	Pycr2 (ENSCGRG00001024961) #21	Lefty1 (ENSCGRG00001024886) #22	Tmem63a (ENSCGRG00001022346)	Ephx1 (ENSCGRG00001023454)	9130409I23Rik (ENSCGRG00001023435) #24	ENSCGRG00001016864 ##24	Nvl (ENSCGRG00001007917) #25	Cnih4 (ENSCGRG00001000385) #26	Wdr26 (ENSCGRG00001018374) #27	Cnih3 (ENSCGRG00001018492) #28	Ccdc121rt1 (ENSCGRG00001005549) #29	ENSCGRG00001009826 #30	Lbr (ENSCGRG00001022299) #31	Enah (ENSCGRG00001013627) #32	Srp9 (ENSCGRG00001008910) #33
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.a #18	ENSGT00530000063402.b #19	ENSGT00390000010056.y #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33
Prairie vole	MODERN SPECIES	14	Cnst (ENSMOCG00000006613)	Sccpdh (ENSMOCG00000017380)	Kif28 (ENSMOCG00000022053)	Ahctf1 (ENSMOCG00000004774) #7	Cdc42bpa (ENSMOCG00000019771) #9	Coq8a (ENSMOCG00000022622) #10	Psen2 (ENSMOCG00000021854) #11	Itpkb (ENSMOCG00000002630) #12	Stum (ENSMOCG00000020677) #13	Parp1 (ENSMOCG00000014315) #14	Lin9 (ENSMOCG00000021496) #15	Mixl1 (ENSMOCG00000022650) #16	Acbd3 (ENSMOCG00000021409) #17	ENSMOCG00000017501 #18	Sde2 (ENSMOCG00000003863) #19	Lefty2 (ENSMOCG00000020511) #20	Pycr2 (ENSMOCG00000000522) #21	Lefty1 (ENSMOCG00000013803) #22	Tmem63a (ENSMOCG00000010850)	ENSMOCG00000002922	9130409I23Rik (ENSMOCG00000021672) #24	Nvl (ENSMOCG00000017466) #25	Cnih4 (ENSMOCG00000014531) #26	Wdr26 (ENSMOCG00000018920) #27	Cnih3 (ENSMOCG00000011071) #28	ENSMOCG00000011930 #30	ENSMOCG00000009557	Enah (ENSMOCG00000016095) #32	ENSMOCG00000004862	ENSMOCG00000019142	Srp9 (ENSMOCG00000012590) #33
Northern American deer mouse	MODERN SPECIES	2	Sccpdh (ENSPEMG00000017539)	Kif28 (ENSPEMG00000014020)	ENSPEMG00000016591	Ahctf1 (ENSPEMG00000000305) #7	Cdc42bpa (ENSPEMG00000016582) #9	Coq8a (ENSPEMG00000010057) #10	Psen2 (ENSPEMG00000006562) #11	Itpkb (ENSPEMG00000000832) #12	Stum (ENSPEMG00000000087) #13	Parp1 (ENSPEMG00000020230) #14	Lin9 (ENSPEMG00000020176) #15	Mixl1 (ENSPEMG00000020007) #16	Acbd3 (ENSPEMG00000019971) #17	ENSPEMG00000019940 ##18	Sde2 (ENSPEMG00000001047) #19	Lefty2 (ENSPEMG00000018991) #20	Pycr2 (ENSPEMG00000018727) #21	Lefty1 (ENSPEMG00000026696) #22	Tmem63a (ENSPEMG00000016310)	ENSPEMG00000024494	ENSPEMG00000025705	9130409I23Rik (ENSPEMG00000011902) #24	ENSPEMG00000025337 ##24	Nvl (ENSPEMG00000001236) #25	Cnih4 (ENSPEMG00000012374) #26	Wdr26 (ENSPEMG00000010249) #27	Cnih3 (ENSPEMG00000008307) #28	Ccdc121rt1 (ENSPEMG00000029360) #29	Dnah14 (ENSPEMG00000025670) #30	Lbr (ENSPEMG00000022439) #31	Enah (ENSPEMG00000022874) #32
Murinae	ANCESTRAL SPECIES	11	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.b.a.b.tb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33
Mus	ANCESTRAL SPECIES	5	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.b.a.b.tb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33
Mus_A	DUPLICATION
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT00860000135936	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.b.a.b.tb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y.a.a #20	ENSGT00390000010056.y.a.b #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT00860000135936	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.a.yb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y.a.a #20	ENSGT00390000010056.y.a.b #20	ENSGT00390000010056.y.b #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT00860000135936	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188.u #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.b.a.b.tb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y.a.a #20	ENSGT00390000010056.y.a.b #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32
spretus	MODERN SPECIES		Sccpdh (MGP_SPRETEiJ_G0015768)	Kif28 (MGP_SPRETEiJ_G0015769)	Ahctf1 (MGP_SPRETEiJ_G0015770) #7	MGP_SPRETEiJ_G0015771	Cdc42bpa (MGP_SPRETEiJ_G0015772) #9	Coq8a (MGP_SPRETEiJ_G0015773) #10	Psen2 (MGP_SPRETEiJ_G0015774) #11	Itpkb (MGP_SPRETEiJ_G0015775) #12	Stum (MGP_SPRETEiJ_G0015776) #13	Parp1 (MGP_SPRETEiJ_G0015777) #14	Lin9 (MGP_SPRETEiJ_G0015778) #15	Mixl1 (MGP_SPRETEiJ_G0015779) #16	Acbd3 (MGP_SPRETEiJ_G0015780) #17	MGP_SPRETEiJ_G0015781 ##18	Sde2 (MGP_SPRETEiJ_G0015782) #19	MGP_SPRETEiJ_G0015783 #20	MGP_SPRETEiJ_G0015784 #20	Pycr2 (MGP_SPRETEiJ_G0015785) #21	Tmem63a (MGP_SPRETEiJ_G0015786)	Ephx1 (MGP_SPRETEiJ_G0015787)	9130409I23Rik (MGP_SPRETEiJ_G0015788) #24	Nvl (MGP_SPRETEiJ_G0015789) #25	Cnih4 (MGP_SPRETEiJ_G0015790) #26	Wdr26 (MGP_SPRETEiJ_G0015791) #27	Cnih3 (MGP_SPRETEiJ_G0015792) #28	MGP_SPRETEiJ_G0015793 #29	MGP_SPRETEiJ_G0015794 #30	Lbr (MGP_SPRETEiJ_G0015795) #31	Enah (MGP_SPRETEiJ_G0015796) #32	Srp9 (MGP_SPRETEiJ_G0015797) #33	Vmn1r1 (MGP_SPRETEiJ_G0015798)
Ryukyu mouse	MODERN SPECIES		Sccpdh (MGP_CAROLIEiJ_G0014969)	Kif28 (MGP_CAROLIEiJ_G0014970)	Ahctf1 (MGP_CAROLIEiJ_G0014971) #7	MGP_CAROLIEiJ_G0014972	Cdc42bpa (MGP_CAROLIEiJ_G0014973) #9	Coq8a (MGP_CAROLIEiJ_G0014974) #10	Psen2 (MGP_CAROLIEiJ_G0014975) #11	Itpkb (MGP_CAROLIEiJ_G0014976) #12	Stum (MGP_CAROLIEiJ_G0014977) #13	Parp1 (MGP_CAROLIEiJ_G0014978) #14	MGP_CAROLIEiJ_G0014979 #15	Mixl1 (MGP_CAROLIEiJ_G0014980) #16	Acbd3 (MGP_CAROLIEiJ_G0014981) #17	MGP_CAROLIEiJ_G0014982 ##18	Sde2 (MGP_CAROLIEiJ_G0014983) #19	MGP_CAROLIEiJ_G0014984 #20	MGP_CAROLIEiJ_G0014985 #20	Pycr2 (MGP_CAROLIEiJ_G0014986) #21	Tmem63a (MGP_CAROLIEiJ_G0014987)	Ephx1 (MGP_CAROLIEiJ_G0014988)	Nvl (MGP_CAROLIEiJ_G0014989) #25	Cnih4 (MGP_CAROLIEiJ_G0014990) #26	MGP_CAROLIEiJ_G0014991 #27	Cnih3 (MGP_CAROLIEiJ_G0014992) #28	Ccdc121rt1 (MGP_CAROLIEiJ_G0014993) #29	MGP_CAROLIEiJ_G0014994 #30	Lbr (MGP_CAROLIEiJ_G0014995) #31	Enah (MGP_CAROLIEiJ_G0014996) #32	Srp9 (MGP_CAROLIEiJ_G0014997) #33	Vmn1r1 (MGP_CAROLIEiJ_G0014998)	Degs1 (MGP_CAROLIEiJ_G0014999) #34
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT00860000135936	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.b.a.b.tb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y.a.a #20	ENSGT00390000010056.y.a.b #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT00860000135936	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.a.yb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y.a.a #20	ENSGT00390000010056.y.a.b #20	ENSGT00390000010056.y.b #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000163104	ENSGT00390000018900 #7	ENSGT00860000135936	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188.u #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.b.a.b.a.b.tb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y.a.a #20	ENSGT00390000010056.y.a.b #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33
spretus	MODERN SPECIES		Kif28 (MGP_SPRETEiJ_G0015769)	Ahctf1 (MGP_SPRETEiJ_G0015770) #7	MGP_SPRETEiJ_G0015771	Cdc42bpa (MGP_SPRETEiJ_G0015772) #9	Coq8a (MGP_SPRETEiJ_G0015773) #10	Psen2 (MGP_SPRETEiJ_G0015774) #11	Itpkb (MGP_SPRETEiJ_G0015775) #12	Stum (MGP_SPRETEiJ_G0015776) #13	Parp1 (MGP_SPRETEiJ_G0015777) #14	Lin9 (MGP_SPRETEiJ_G0015778) #15	Mixl1 (MGP_SPRETEiJ_G0015779) #16	Acbd3 (MGP_SPRETEiJ_G0015780) #17	MGP_SPRETEiJ_G0015781 ##18	Sde2 (MGP_SPRETEiJ_G0015782) #19	MGP_SPRETEiJ_G0015783 #20	MGP_SPRETEiJ_G0015784 #20	Pycr2 (MGP_SPRETEiJ_G0015785) #21	Tmem63a (MGP_SPRETEiJ_G0015786)	Ephx1 (MGP_SPRETEiJ_G0015787)	9130409I23Rik (MGP_SPRETEiJ_G0015788) #24	Nvl (MGP_SPRETEiJ_G0015789) #25	Cnih4 (MGP_SPRETEiJ_G0015790) #26	Wdr26 (MGP_SPRETEiJ_G0015791) #27	Cnih3 (MGP_SPRETEiJ_G0015792) #28	MGP_SPRETEiJ_G0015793 #29	MGP_SPRETEiJ_G0015794 #30	Lbr (MGP_SPRETEiJ_G0015795) #31	Enah (MGP_SPRETEiJ_G0015796) #32	Srp9 (MGP_SPRETEiJ_G0015797) #33	Vmn1r1 (MGP_SPRETEiJ_G0015798)	Degs1 (MGP_SPRETEiJ_G0015799) #34
Ryukyu mouse	MODERN SPECIES		Kif28 (MGP_CAROLIEiJ_G0014970)	Ahctf1 (MGP_CAROLIEiJ_G0014971) #7	MGP_CAROLIEiJ_G0014972	Cdc42bpa (MGP_CAROLIEiJ_G0014973) #9	Coq8a (MGP_CAROLIEiJ_G0014974) #10	Psen2 (MGP_CAROLIEiJ_G0014975) #11	Itpkb (MGP_CAROLIEiJ_G0014976) #12	Stum (MGP_CAROLIEiJ_G0014977) #13	Parp1 (MGP_CAROLIEiJ_G0014978) #14	MGP_CAROLIEiJ_G0014979 #15	Mixl1 (MGP_CAROLIEiJ_G0014980) #16	Acbd3 (MGP_CAROLIEiJ_G0014981) #17	MGP_CAROLIEiJ_G0014982 ##18	Sde2 (MGP_CAROLIEiJ_G0014983) #19	MGP_CAROLIEiJ_G0014984 #20	MGP_CAROLIEiJ_G0014985 #20	Pycr2 (MGP_CAROLIEiJ_G0014986) #21	Tmem63a (MGP_CAROLIEiJ_G0014987)	Ephx1 (MGP_CAROLIEiJ_G0014988)	Nvl (MGP_CAROLIEiJ_G0014989) #25	Cnih4 (MGP_CAROLIEiJ_G0014990) #26	MGP_CAROLIEiJ_G0014991 #27	Cnih3 (MGP_CAROLIEiJ_G0014992) #28	Ccdc121rt1 (MGP_CAROLIEiJ_G0014993) #29	MGP_CAROLIEiJ_G0014994 #30	Lbr (MGP_CAROLIEiJ_G0014995) #31	Enah (MGP_CAROLIEiJ_G0014996) #32	Srp9 (MGP_CAROLIEiJ_G0014997) #33	Vmn1r1 (MGP_CAROLIEiJ_G0014998)	Degs1 (MGP_CAROLIEiJ_G0014999) #34	Fbxo28 (MGP_CAROLIEiJ_G0015000) #35
Mus_A	ANCESTRAL SPECIES																	ENSGT00390000010056.y.b #20
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000018900 #7	ENSGT00860000135936	ENSGT01030000234517.H.b #9	ENSGT00940000156810 #10	ENSGT00940000157923 #11	ENSGT00940000156764.a #12	ENSGT00390000008003 #13	ENSGT00940000156058 #14	ENSGT00390000003188 #15	ENSGT00940000162190 #16	ENSGT00530000063651.a #17	ENSGT01100000263504.a.a.yb ##18	ENSGT00530000063402.b #19	ENSGT00390000010056.y.a.a #20	ENSGT00390000010056.y.a.b #20	ENSGT00390000010056.y.b #20	ENSGT00950000183044.a.a.a.c #21	ENSGT00390000010056.z #22	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000013448.a.a.j.a #24	ENSGT00390000013448.a.a.j.b ##24	ENSGT00570000079239 #25	ENSGT00950000182834.B #26	ENSGT00940000153634.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT01000000214622.a.a.a #29	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #31	ENSGT00940000157376 #32	ENSGT00390000018505.b #33
Mouse	MODERN SPECIES		Cnst (ENSMUSG00000038949)	Sccpdh (ENSMUSG00000038936)	Kif28 (ENSMUSG00000087236)	Ahctf1 (ENSMUSG00000026491) #7	Cdc42bpa (ENSMUSG00000026490) #9	Coq8a (ENSMUSG00000026489) #10	Psen2 (ENSMUSG00000010609) #11	Itpkb (ENSMUSG00000038855) #12	Stum (ENSMUSG00000053963) #13	Parp1 (ENSMUSG00000026496) #14	Lin9 (ENSMUSG00000058729) #15	Mixl1 (ENSMUSG00000026497) #16	Acbd3 (ENSMUSG00000026499) #17	H3f3a (ENSMUSG00000060743) ##18	Sde2 (ENSMUSG00000038806) #19	Lefty2 (ENSMUSG00000066652) #20	Pycr2 (ENSMUSG00000026520) #21	Lefty1 (ENSMUSG00000038793) #22	Tmem63a (ENSMUSG00000026519)	Ephx1 (ENSMUSG00000038776)	9130409I23Rik (ENSMUSG00000038768) #24	Nvl (ENSMUSG00000026516) #25	Cnih4 (ENSMUSG00000062169) #26	Wdr26 (ENSMUSG00000038733) #27	Cnih3 (ENSMUSG00000026514) #28	Ccdc121rt1 (ENSMUSG00000050625) #29	Dnah14 (ENSMUSG00000047369) #30	Lbr (ENSMUSG00000004880) #31	Enah (ENSMUSG00000022995) #32	Srp9 (ENSMUSG00000026511) #33	Vmn1r1 (ENSMUSG00000091013)
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000010056.y.b #20
Steppe mouse	MODERN SPECIES	3304	ENSMSIG00000005652	Kif28 (ENSMSIG00000005729)	Ahctf1 (ENSMSIG00000005983) #7	ENSMSIG00000006134	Cdc42bpa (ENSMSIG00000006204) #9	Coq8a (ENSMSIG00000007186) #10	Psen2 (ENSMSIG00000007254) #11	Itpkb (ENSMSIG00000007328) #12	Stum (ENSMSIG00000007366) #13	Parp1 (ENSMSIG00000007405) #14	ENSMSIG00000007488 #15	Mixl1 (ENSMSIG00000007539) #16	Acbd3 (ENSMSIG00000007560) #17	ENSMSIG00000007594 ##18	Sde2 (ENSMSIG00000007635) #19	Lefty2 (ENSMSIG00000007680) #20	Pycr2 (ENSMSIG00000007693) #21	Lefty1 (ENSMSIG00000007710) #22	Tmem63a (ENSMSIG00000007714)	Ephx1 (ENSMSIG00000007746)	ENSMSIG00000007797	ENSMSIG00000007826	9130409I23Rik (ENSMSIG00000007843) #24	ENSMSIG00000007861 ##24	Nvl (ENSMSIG00000007946) #25	ENSMSIG00000008071 #26	Wdr26 (ENSMSIG00000008106) #27	ENSMSIG00000008233	Cnih3 (ENSMSIG00000008251) #28	Ccdc121rt1 (ENSMSIG00000008319) #29	Dnah14 (ENSMSIG00000008331) #30
Shrew mouse	MODERN SPECIES	18	Sccpdh (MGP_PahariEiJ_G0028200)	Kif28 (MGP_PahariEiJ_G0028201)	MGP_PahariEiJ_G0028202 #7	MGP_PahariEiJ_G0028203	Cdc42bpa (MGP_PahariEiJ_G0028204) #9	Coq8a (MGP_PahariEiJ_G0028205) #10	Psen2 (MGP_PahariEiJ_G0028206) #11	Itpkb (MGP_PahariEiJ_G0028207) #12	Stum (MGP_PahariEiJ_G0028208) #13	MGP_PahariEiJ_G0028209 #14	Lin9 (MGP_PahariEiJ_G0028210) #15	Mixl1 (MGP_PahariEiJ_G0028211) #16	Acbd3 (MGP_PahariEiJ_G0028212) #17	MGP_PahariEiJ_G0028213 ##18	Sde2 (MGP_PahariEiJ_G0028214) #19	Lefty2 (MGP_PahariEiJ_G0028215) #20	MGP_PahariEiJ_G0028216 #22	Pycr2 (MGP_PahariEiJ_G0028217) #21	Tmem63a (MGP_PahariEiJ_G0028218)	MGP_PahariEiJ_G0028219	9130409I23Rik (MGP_PahariEiJ_G0028220) #24	Nvl (MGP_PahariEiJ_G0028221) #25	Cnih4 (MGP_PahariEiJ_G0028222) #26	Wdr26 (MGP_PahariEiJ_G0028223) #27	Cnih3 (MGP_PahariEiJ_G0028224) #28	Ccdc121rt1 (MGP_PahariEiJ_G0028225) #29	MGP_PahariEiJ_G0028226 #30	Lbr (MGP_PahariEiJ_G0028227) #31	Enah (MGP_PahariEiJ_G0028228) #32	Srp9 (MGP_PahariEiJ_G0028229) #33	Vmn1r1 (MGP_PahariEiJ_G0028230)
Rat	MODERN SPECIES	4	Cnst (ENSRNOG00000002710)	Sccpdh (ENSRNOG00000066712)	Kif28p (ENSRNOG00000050602)	Ahctf1 (ENSRNOG00000023541) #7	Cdc42bpa (ENSRNOG00000002841) #9	Coq8a (ENSRNOG00000043201) #10	Psen2 (ENSRNOG00000002879) #11	Itpkb (ENSRNOG00000002969) #12	Stum (ENSRNOG00000071066) #13	Parp1 (ENSRNOG00000003084) #14	Lin9 (ENSRNOG00000023304) #15	Mixl1 (ENSRNOG00000003176) #16	Acbd3 (ENSRNOG00000003185) #17	H3f3b (ENSRNOG00000003220) ##18	Sde2 (ENSRNOG00000003247) #19	Lefty2 (ENSRNOG00000060325) #20	Pycr2 (ENSRNOG00000003267) #21	Lefty1 (ENSRNOG00000003263) #22	Tmem63a (ENSRNOG00000003310)	Ephx1 (ENSRNOG00000003515)	LOC498300 (ENSRNOG00000050163) #24	RGD1564463 (ENSRNOG00000003601) ##24	Nvl (ENSRNOG00000003629) #25	Cnih4 (ENSRNOG00000003717) #26	Wdr26 (ENSRNOG00000003723) #27	Cnih3 (ENSRNOG00000022724) #28	Ccdc121rt (ENSRNOG00000022717) #29	Dnah14 (ENSRNOG00000070092) #30	Lbr (ENSRNOG00000052574) #31	Enah (ENSRNOG00000031934) #32	Srp9 (ENSRNOG00000003211) #33
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1795		Cdc42bpa (ENSNGAG00000016580) #9	ENSNGAG00000015462	Coq8a (ENSNGAG00000022006) #10	Psen2 (ENSNGAG00000023668) #11	ENSNGAG00000004558	Itpkb (ENSNGAG00000006387) #12	Stum (ENSNGAG00000007799) #13	Parp1 (ENSNGAG00000003885) #14	Lin9 (ENSNGAG00000010078) #15	Mixl1 (ENSNGAG00000018300) #16	Acbd3 (ENSNGAG00000019285) #17	ENSNGAG00000008728 ##18	Sde2 (ENSNGAG00000022889) #19	ENSNGAG00000006685	ENSNGAG00000023800 #20	Pycr2 (ENSNGAG00000004193) #21	ENSNGAG00000007205 #20	Tmem63a (ENSNGAG00000010999)	ENSNGAG00000013471	ENSNGAG00000007235
Upper Galilee mountains blind mole rat	MODERN SPECIES	1795	ENSNGAG00000015462	Coq8a (ENSNGAG00000022006) #10	Psen2 (ENSNGAG00000023668) #11	ENSNGAG00000004558	Itpkb (ENSNGAG00000006387) #12	Stum (ENSNGAG00000007799) #13	Parp1 (ENSNGAG00000003885) #14	Lin9 (ENSNGAG00000010078) #15	Mixl1 (ENSNGAG00000018300) #16	Acbd3 (ENSNGAG00000019285) #17	ENSNGAG00000008728 ##18	Sde2 (ENSNGAG00000022889) #19	ENSNGAG00000006685	ENSNGAG00000023800 #20	Pycr2 (ENSNGAG00000004193) #21	ENSNGAG00000007205 #20	Tmem63a (ENSNGAG00000010999)	ENSNGAG00000013471	ENSNGAG00000007235
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	51	Cnst (ENSJJAG00000019924)	Sccpdh (ENSJJAG00000016528)	Kif28 (ENSJJAG00000009428)	Ahctf1 (ENSJJAG00000015815) #7	Cdc42bpa (ENSJJAG00000010408) #9	Coq8a (ENSJJAG00000001225) #10	Psen2 (ENSJJAG00000023570) #11	Itpkb (ENSJJAG00000010265) #12	Stum (ENSJJAG00000021582) #13	Parp1 (ENSJJAG00000023497) #14	Lin9 (ENSJJAG00000019828) #15	ENSJJAG00000018401 #16	Acbd3 (ENSJJAG00000014401) #17	ENSJJAG00000000867 ##18	Sde2 (ENSJJAG00000002996) #19	ENSJJAG00000011178 #20	Pycr2 (ENSJJAG00000014536) #21	ENSJJAG00000009374 #20	Tmem63a (ENSJJAG00000016345)	Ephx1 (ENSJJAG00000022906)	ENSJJAG00000022098	ENSJJAG00000000689 #24	Nvl (ENSJJAG00000003012) #25	ENSJJAG00000020517 #26	Wdr26 (ENSJJAG00000019959) #27	Cnih3 (ENSJJAG00000023601) #28	Dnah14 (ENSJJAG00000023244) #30	ENSJJAG00000007609	ENSJJAG00000023116	Enah (ENSJJAG00000023846) #32	Srp9 (ENSJJAG00000016583) #33
Lesser Egyptian jerboa	MODERN SPECIES	51	Kif28 (ENSJJAG00000009428)	Ahctf1 (ENSJJAG00000015815) #7	Cdc42bpa (ENSJJAG00000010408) #9	Coq8a (ENSJJAG00000001225) #10	Psen2 (ENSJJAG00000023570) #11	Itpkb (ENSJJAG00000010265) #12	Stum (ENSJJAG00000021582) #13	Parp1 (ENSJJAG00000023497) #14	Lin9 (ENSJJAG00000019828) #15	ENSJJAG00000018401 #16	Acbd3 (ENSJJAG00000014401) #17	ENSJJAG00000000867 ##18	Sde2 (ENSJJAG00000002996) #19	ENSJJAG00000011178 #20	Pycr2 (ENSJJAG00000014536) #21	ENSJJAG00000009374 #20	Tmem63a (ENSJJAG00000016345)	Ephx1 (ENSJJAG00000022906)	ENSJJAG00000022098	ENSJJAG00000000689 #24	Nvl (ENSJJAG00000003012) #25	ENSJJAG00000020517 #26	Wdr26 (ENSJJAG00000019959) #27	Cnih3 (ENSJJAG00000023601) #28	Dnah14 (ENSJJAG00000023244) #30	ENSJJAG00000007609	ENSJJAG00000023116	Enah (ENSJJAG00000023846) #32	Srp9 (ENSJJAG00000016583) #33	ENSJJAG00000015313 #24	Fbxo28 (ENSJJAG00000010586) #35