Sarcopterygii	ANCESTRAL SPECIES	728														ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24
Tetrapoda	ANCESTRAL SPECIES	15								ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT01030000234555.a.b	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165101	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Amniota	ANCESTRAL SPECIES	12	ENSGT00620000087966.b	ENSGT01030000234620.a.b.b.a	ENSGT00390000009379	ENSGT00390000007971	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165101	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00940000170165	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Mammalia	ANCESTRAL SPECIES	2	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165101	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Theria	ANCESTRAL SPECIES	12	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Eutheria	ANCESTRAL SPECIES		ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Glires	ANCESTRAL SPECIES		ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Rodentia	ANCESTRAL SPECIES		ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Rodentia_B	ANCESTRAL SPECIES	45	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26
Myomorpha	ANCESTRAL SPECIES	16	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26
Muroidea	ANCESTRAL SPECIES	9	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Muroidea_A	DUPLICATION
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37
Murinae	ANCESTRAL SPECIES	11	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37
Rat	MODERN SPECIES	4	Cnst (ENSRNOG00000002710) #7	Sccpdh (ENSRNOG00000066712) #8	Kif28p (ENSRNOG00000050602) #9	Ahctf1 (ENSRNOG00000023541) #10	Cdc42bpa (ENSRNOG00000002841) #11	Coq8a (ENSRNOG00000043201) #12	Psen2 (ENSRNOG00000002879) #13	Itpkb (ENSRNOG00000002969) #14	Stum (ENSRNOG00000071066) #15	Parp1 (ENSRNOG00000003084) #16	Lin9 (ENSRNOG00000023304) #17	Mixl1 (ENSRNOG00000003176) #18	Acbd3 (ENSRNOG00000003185) #19	H3f3b (ENSRNOG00000003220) #20	Sde2 (ENSRNOG00000003247) #21	Lefty2 (ENSRNOG00000060325) #22	Pycr2 (ENSRNOG00000003267) #23	Lefty1 (ENSRNOG00000003263) #24	Tmem63a (ENSRNOG00000003310) #25	Ephx1 (ENSRNOG00000003515) #26	LOC498300 (ENSRNOG00000050163) #27	RGD1564463 (ENSRNOG00000003601) #28	Nvl (ENSRNOG00000003629) #29	Cnih4 (ENSRNOG00000003717) #30	Wdr26 (ENSRNOG00000003723) #31	Cnih3 (ENSRNOG00000022724) #32	Ccdc121rt (ENSRNOG00000022717) #33	Dnah14 (ENSRNOG00000070092) #34	Lbr (ENSRNOG00000052574) #35	Enah (ENSRNOG00000031934) #36	Srp9 (ENSRNOG00000003211) #37
Mus	ANCESTRAL SPECIES	5	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37
Mus_A	DUPLICATION
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00390000010056.y.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188.u #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36
spretus	MODERN SPECIES		Sccpdh (MGP_SPRETEiJ_G0015768) #8	Kif28 (MGP_SPRETEiJ_G0015769) #9	Ahctf1 (MGP_SPRETEiJ_G0015770) #10	MGP_SPRETEiJ_G0015771	Cdc42bpa (MGP_SPRETEiJ_G0015772) #11	Coq8a (MGP_SPRETEiJ_G0015773) #12	Psen2 (MGP_SPRETEiJ_G0015774) #13	Itpkb (MGP_SPRETEiJ_G0015775) #14	Stum (MGP_SPRETEiJ_G0015776) #15	Parp1 (MGP_SPRETEiJ_G0015777) #16	Lin9 (MGP_SPRETEiJ_G0015778) #17	Mixl1 (MGP_SPRETEiJ_G0015779) #18	Acbd3 (MGP_SPRETEiJ_G0015780) #19	MGP_SPRETEiJ_G0015781 ##20	Sde2 (MGP_SPRETEiJ_G0015782) #21	MGP_SPRETEiJ_G0015783 #22	MGP_SPRETEiJ_G0015784 #22	Pycr2 (MGP_SPRETEiJ_G0015785) #23	Tmem63a (MGP_SPRETEiJ_G0015786) #25	Ephx1 (MGP_SPRETEiJ_G0015787) #26	9130409I23Rik (MGP_SPRETEiJ_G0015788) #27	Nvl (MGP_SPRETEiJ_G0015789) #29	Cnih4 (MGP_SPRETEiJ_G0015790) #30	Wdr26 (MGP_SPRETEiJ_G0015791) #31	Cnih3 (MGP_SPRETEiJ_G0015792) #32	MGP_SPRETEiJ_G0015793 #33	MGP_SPRETEiJ_G0015794 #34	Lbr (MGP_SPRETEiJ_G0015795) #35	Enah (MGP_SPRETEiJ_G0015796) #36	Srp9 (MGP_SPRETEiJ_G0015797) #37	Vmn1r1 (MGP_SPRETEiJ_G0015798)
Ryukyu mouse	MODERN SPECIES		Sccpdh (MGP_CAROLIEiJ_G0014969) #8	Kif28 (MGP_CAROLIEiJ_G0014970) #9	Ahctf1 (MGP_CAROLIEiJ_G0014971) #10	MGP_CAROLIEiJ_G0014972	Cdc42bpa (MGP_CAROLIEiJ_G0014973) #11	Coq8a (MGP_CAROLIEiJ_G0014974) #12	Psen2 (MGP_CAROLIEiJ_G0014975) #13	Itpkb (MGP_CAROLIEiJ_G0014976) #14	Stum (MGP_CAROLIEiJ_G0014977) #15	Parp1 (MGP_CAROLIEiJ_G0014978) #16	MGP_CAROLIEiJ_G0014979 #17	Mixl1 (MGP_CAROLIEiJ_G0014980) #18	Acbd3 (MGP_CAROLIEiJ_G0014981) #19	MGP_CAROLIEiJ_G0014982 ##20	Sde2 (MGP_CAROLIEiJ_G0014983) #21	MGP_CAROLIEiJ_G0014984 #22	MGP_CAROLIEiJ_G0014985 #22	Pycr2 (MGP_CAROLIEiJ_G0014986) #23	Tmem63a (MGP_CAROLIEiJ_G0014987) #25	Ephx1 (MGP_CAROLIEiJ_G0014988) #26	Nvl (MGP_CAROLIEiJ_G0014989) #29	Cnih4 (MGP_CAROLIEiJ_G0014990) #30	MGP_CAROLIEiJ_G0014991 #31	Cnih3 (MGP_CAROLIEiJ_G0014992) #32	Ccdc121rt1 (MGP_CAROLIEiJ_G0014993) #33	MGP_CAROLIEiJ_G0014994 #34	Lbr (MGP_CAROLIEiJ_G0014995) #35	Enah (MGP_CAROLIEiJ_G0014996) #36	Srp9 (MGP_CAROLIEiJ_G0014997) #37	Vmn1r1 (MGP_CAROLIEiJ_G0014998)	Degs1 (MGP_CAROLIEiJ_G0014999) ##28
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00390000010056.y.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188.u #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37
spretus	MODERN SPECIES		Kif28 (MGP_SPRETEiJ_G0015769) #9	Ahctf1 (MGP_SPRETEiJ_G0015770) #10	MGP_SPRETEiJ_G0015771	Cdc42bpa (MGP_SPRETEiJ_G0015772) #11	Coq8a (MGP_SPRETEiJ_G0015773) #12	Psen2 (MGP_SPRETEiJ_G0015774) #13	Itpkb (MGP_SPRETEiJ_G0015775) #14	Stum (MGP_SPRETEiJ_G0015776) #15	Parp1 (MGP_SPRETEiJ_G0015777) #16	Lin9 (MGP_SPRETEiJ_G0015778) #17	Mixl1 (MGP_SPRETEiJ_G0015779) #18	Acbd3 (MGP_SPRETEiJ_G0015780) #19	MGP_SPRETEiJ_G0015781 ##20	Sde2 (MGP_SPRETEiJ_G0015782) #21	MGP_SPRETEiJ_G0015783 #22	MGP_SPRETEiJ_G0015784 #22	Pycr2 (MGP_SPRETEiJ_G0015785) #23	Tmem63a (MGP_SPRETEiJ_G0015786) #25	Ephx1 (MGP_SPRETEiJ_G0015787) #26	9130409I23Rik (MGP_SPRETEiJ_G0015788) #27	Nvl (MGP_SPRETEiJ_G0015789) #29	Cnih4 (MGP_SPRETEiJ_G0015790) #30	Wdr26 (MGP_SPRETEiJ_G0015791) #31	Cnih3 (MGP_SPRETEiJ_G0015792) #32	MGP_SPRETEiJ_G0015793 #33	MGP_SPRETEiJ_G0015794 #34	Lbr (MGP_SPRETEiJ_G0015795) #35	Enah (MGP_SPRETEiJ_G0015796) #36	Srp9 (MGP_SPRETEiJ_G0015797) #37	Vmn1r1 (MGP_SPRETEiJ_G0015798)	Degs1 (MGP_SPRETEiJ_G0015799) ##28
Ryukyu mouse	MODERN SPECIES		Kif28 (MGP_CAROLIEiJ_G0014970) #9	Ahctf1 (MGP_CAROLIEiJ_G0014971) #10	MGP_CAROLIEiJ_G0014972	Cdc42bpa (MGP_CAROLIEiJ_G0014973) #11	Coq8a (MGP_CAROLIEiJ_G0014974) #12	Psen2 (MGP_CAROLIEiJ_G0014975) #13	Itpkb (MGP_CAROLIEiJ_G0014976) #14	Stum (MGP_CAROLIEiJ_G0014977) #15	Parp1 (MGP_CAROLIEiJ_G0014978) #16	MGP_CAROLIEiJ_G0014979 #17	Mixl1 (MGP_CAROLIEiJ_G0014980) #18	Acbd3 (MGP_CAROLIEiJ_G0014981) #19	MGP_CAROLIEiJ_G0014982 ##20	Sde2 (MGP_CAROLIEiJ_G0014983) #21	MGP_CAROLIEiJ_G0014984 #22	MGP_CAROLIEiJ_G0014985 #22	Pycr2 (MGP_CAROLIEiJ_G0014986) #23	Tmem63a (MGP_CAROLIEiJ_G0014987) #25	Ephx1 (MGP_CAROLIEiJ_G0014988) #26	Nvl (MGP_CAROLIEiJ_G0014989) #29	Cnih4 (MGP_CAROLIEiJ_G0014990) #30	MGP_CAROLIEiJ_G0014991 #31	Cnih3 (MGP_CAROLIEiJ_G0014992) #32	Ccdc121rt1 (MGP_CAROLIEiJ_G0014993) #33	MGP_CAROLIEiJ_G0014994 #34	Lbr (MGP_CAROLIEiJ_G0014995) #35	Enah (MGP_CAROLIEiJ_G0014996) #36	Srp9 (MGP_CAROLIEiJ_G0014997) #37	Vmn1r1 (MGP_CAROLIEiJ_G0014998)	Degs1 (MGP_CAROLIEiJ_G0014999) ##28	Fbxo28 (MGP_CAROLIEiJ_G0015000)
Mus_A	ANCESTRAL SPECIES																	ENSGT00390000010056.y.b #22
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00390000010056.y.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37
Mouse	MODERN SPECIES		Cnst (ENSMUSG00000038949) #7	Sccpdh (ENSMUSG00000038936) #8	Kif28 (ENSMUSG00000087236) #9	Ahctf1 (ENSMUSG00000026491) #10	Cdc42bpa (ENSMUSG00000026490) #11	Coq8a (ENSMUSG00000026489) #12	Psen2 (ENSMUSG00000010609) #13	Itpkb (ENSMUSG00000038855) #14	Stum (ENSMUSG00000053963) #15	Parp1 (ENSMUSG00000026496) #16	Lin9 (ENSMUSG00000058729) #17	Mixl1 (ENSMUSG00000026497) #18	Acbd3 (ENSMUSG00000026499) #19	H3f3a (ENSMUSG00000060743) #20	Sde2 (ENSMUSG00000038806) #21	Lefty2 (ENSMUSG00000066652) #22	Pycr2 (ENSMUSG00000026520) #23	Lefty1 (ENSMUSG00000038793) #24	Tmem63a (ENSMUSG00000026519) #25	Ephx1 (ENSMUSG00000038776) #26	9130409I23Rik (ENSMUSG00000038768) #27	Nvl (ENSMUSG00000026516) #29	Cnih4 (ENSMUSG00000062169) #30	Wdr26 (ENSMUSG00000038733) #31	Cnih3 (ENSMUSG00000026514) #32	Ccdc121rt1 (ENSMUSG00000050625) #33	Dnah14 (ENSMUSG00000047369) #34	Lbr (ENSMUSG00000004880) #35	Enah (ENSMUSG00000022995) #36	Srp9 (ENSMUSG00000026511) #37	Vmn1r1 (ENSMUSG00000091013)
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000010056.y.b #22
Steppe mouse	MODERN SPECIES	3304	ENSMSIG00000005652 #8	Kif28 (ENSMSIG00000005729) #9	Ahctf1 (ENSMSIG00000005983) #10	ENSMSIG00000006134	Cdc42bpa (ENSMSIG00000006204) #11	Coq8a (ENSMSIG00000007186) #12	Psen2 (ENSMSIG00000007254) #13	Itpkb (ENSMSIG00000007328) #14	Stum (ENSMSIG00000007366) #15	Parp1 (ENSMSIG00000007405) #16	ENSMSIG00000007488 #17	Mixl1 (ENSMSIG00000007539) #18	Acbd3 (ENSMSIG00000007560) #19	ENSMSIG00000007594 ##20	Sde2 (ENSMSIG00000007635) #21	Lefty2 (ENSMSIG00000007680) #22	Pycr2 (ENSMSIG00000007693) #23	Lefty1 (ENSMSIG00000007710) #24	Tmem63a (ENSMSIG00000007714) #25	Ephx1 (ENSMSIG00000007746) #26	ENSMSIG00000007797	ENSMSIG00000007826	9130409I23Rik (ENSMSIG00000007843) #27	ENSMSIG00000007861 #28	Nvl (ENSMSIG00000007946) #29	ENSMSIG00000008071 #30	Wdr26 (ENSMSIG00000008106) #31	ENSMSIG00000008233	Cnih3 (ENSMSIG00000008251) #32	Ccdc121rt1 (ENSMSIG00000008319) #33	Dnah14 (ENSMSIG00000008331) #34
Shrew mouse	MODERN SPECIES	18	Sccpdh (MGP_PahariEiJ_G0028200) #8	Kif28 (MGP_PahariEiJ_G0028201) #9	MGP_PahariEiJ_G0028202 #10	MGP_PahariEiJ_G0028203	Cdc42bpa (MGP_PahariEiJ_G0028204) #11	Coq8a (MGP_PahariEiJ_G0028205) #12	Psen2 (MGP_PahariEiJ_G0028206) #13	Itpkb (MGP_PahariEiJ_G0028207) #14	Stum (MGP_PahariEiJ_G0028208) #15	MGP_PahariEiJ_G0028209 #16	Lin9 (MGP_PahariEiJ_G0028210) #17	Mixl1 (MGP_PahariEiJ_G0028211) #18	Acbd3 (MGP_PahariEiJ_G0028212) #19	MGP_PahariEiJ_G0028213 ##20	Sde2 (MGP_PahariEiJ_G0028214) #21	Lefty2 (MGP_PahariEiJ_G0028215) #22	MGP_PahariEiJ_G0028216 #24	Pycr2 (MGP_PahariEiJ_G0028217) #23	Tmem63a (MGP_PahariEiJ_G0028218) #25	MGP_PahariEiJ_G0028219 #26	9130409I23Rik (MGP_PahariEiJ_G0028220) #27	Nvl (MGP_PahariEiJ_G0028221) #29	Cnih4 (MGP_PahariEiJ_G0028222) #30	Wdr26 (MGP_PahariEiJ_G0028223) #31	Cnih3 (MGP_PahariEiJ_G0028224) #32	Ccdc121rt1 (MGP_PahariEiJ_G0028225) #33	MGP_PahariEiJ_G0028226 #34	Lbr (MGP_PahariEiJ_G0028227) #35	Enah (MGP_PahariEiJ_G0028228) #36	Srp9 (MGP_PahariEiJ_G0028229) #37	Vmn1r1 (MGP_PahariEiJ_G0028230)
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37
Golden Hamster	MODERN SPECIES	697	Sccpdh (ENSMAUG00000014050) #8	Kif28 (ENSMAUG00000011576) #9	Ahctf1 (ENSMAUG00000007505) #10	ENSMAUG00000018123	Cdc42bpa (ENSMAUG00000010864) #11	Coq8a (ENSMAUG00000016955) #12	Psen2 (ENSMAUG00000014629) #13	Itpkb (ENSMAUG00000013424) #14	Stum (ENSMAUG00000010054) #15	Parp1 (ENSMAUG00000008306) #16	Lin9 (ENSMAUG00000000458) #17	Mixl1 (ENSMAUG00000000244) #18	Acbd3 (ENSMAUG00000008514) #19	ENSMAUG00000019811 ##20	Sde2 (ENSMAUG00000019326) #21	Lefty2 (ENSMAUG00000018742) #22	Pycr2 (ENSMAUG00000017705) #23	Lefty1 (ENSMAUG00000009066) #24	ENSMAUG00000007599	ENSMAUG00000003804 #27	Nvl (ENSMAUG00000015157) #29	Cnih4 (ENSMAUG00000012691) #30	Wdr26 (ENSMAUG00000014280) #31	Cnih3 (ENSMAUG00000012379) #32	Ccdc121rt1 (ENSMAUG00000010926) #33	ENSMAUG00000014176 #34	Lbr (ENSMAUG00000012993) #35	Enah (ENSMAUG00000017836) #36	Srp9 (ENSMAUG00000017552) #37	Degs1 (ENSMAUG00000015951) ##28	Fbxo28 (ENSMAUG00000017511)
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001016196 #8	ENSCGRG00001014096	Kif28 (ENSCGRG00001022967) #9	Ahctf1 (ENSCGRG00001015843) #10	Cdc42bpa (ENSCGRG00001019928) #11	Coq8a (ENSCGRG00001022055) #12	Psen2 (ENSCGRG00001018733) #13	Itpkb (ENSCGRG00001024584) #14	Stum (ENSCGRG00001022399) #15	Parp1 (ENSCGRG00001020559) #16	Lin9 (ENSCGRG00001014165) #17	Mixl1 (ENSCGRG00001012768) #18	Acbd3 (ENSCGRG00001005103) #19	ENSCGRG00001021129 ##20	Sde2 (ENSCGRG00001018567) #21	Lefty2 (ENSCGRG00001017440) #22	Pycr2 (ENSCGRG00001024961) #23	Lefty1 (ENSCGRG00001024886) #24	Tmem63a (ENSCGRG00001022346) #25	Ephx1 (ENSCGRG00001023454) #26	9130409I23Rik (ENSCGRG00001023435) #27	ENSCGRG00001016864 #28	Nvl (ENSCGRG00001007917) #29	Cnih4 (ENSCGRG00001000385) #30	Wdr26 (ENSCGRG00001018374) #31	Cnih3 (ENSCGRG00001018492) #32	Ccdc121rt1 (ENSCGRG00001005549) #33	ENSCGRG00001009826 #34	Lbr (ENSCGRG00001022299) #35	Enah (ENSCGRG00001013627) #36	Srp9 (ENSCGRG00001008910) #37
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37
Prairie vole	MODERN SPECIES	14	Cnst (ENSMOCG00000006613) #7	Sccpdh (ENSMOCG00000017380) #8	Kif28 (ENSMOCG00000022053) #9	Ahctf1 (ENSMOCG00000004774) #10	Cdc42bpa (ENSMOCG00000019771) #11	Coq8a (ENSMOCG00000022622) #12	Psen2 (ENSMOCG00000021854) #13	Itpkb (ENSMOCG00000002630) #14	Stum (ENSMOCG00000020677) #15	Parp1 (ENSMOCG00000014315) #16	Lin9 (ENSMOCG00000021496) #17	Mixl1 (ENSMOCG00000022650) #18	Acbd3 (ENSMOCG00000021409) #19	ENSMOCG00000017501 ##20	Sde2 (ENSMOCG00000003863) #21	Lefty2 (ENSMOCG00000020511) #22	Pycr2 (ENSMOCG00000000522) #23	Lefty1 (ENSMOCG00000013803) #24	Tmem63a (ENSMOCG00000010850) #25	ENSMOCG00000002922 #26	9130409I23Rik (ENSMOCG00000021672) #27	Nvl (ENSMOCG00000017466) #29	Cnih4 (ENSMOCG00000014531) #30	Wdr26 (ENSMOCG00000018920) #31	Cnih3 (ENSMOCG00000011071) #32	ENSMOCG00000011930 #34	ENSMOCG00000009557	Enah (ENSMOCG00000016095) #36	ENSMOCG00000004862	ENSMOCG00000019142	Srp9 (ENSMOCG00000012590) #37
Northern American deer mouse	MODERN SPECIES	2	Sccpdh (ENSPEMG00000017539) #8	Kif28 (ENSPEMG00000014020) #9	ENSPEMG00000016591	Ahctf1 (ENSPEMG00000000305) #10	Cdc42bpa (ENSPEMG00000016582) #11	Coq8a (ENSPEMG00000010057) #12	Psen2 (ENSPEMG00000006562) #13	Itpkb (ENSPEMG00000000832) #14	Stum (ENSPEMG00000000087) #15	Parp1 (ENSPEMG00000020230) #16	Lin9 (ENSPEMG00000020176) #17	Mixl1 (ENSPEMG00000020007) #18	Acbd3 (ENSPEMG00000019971) #19	ENSPEMG00000019940 ##20	Sde2 (ENSPEMG00000001047) #21	Lefty2 (ENSPEMG00000018991) #22	Pycr2 (ENSPEMG00000018727) #23	Lefty1 (ENSPEMG00000026696) #24	Tmem63a (ENSPEMG00000016310) #25	ENSPEMG00000024494 #26	ENSPEMG00000025705 #26	9130409I23Rik (ENSPEMG00000011902) #27	ENSPEMG00000025337 #28	Nvl (ENSPEMG00000001236) #29	Cnih4 (ENSPEMG00000012374) #30	Wdr26 (ENSPEMG00000010249) #31	Cnih3 (ENSPEMG00000008307) #32	Ccdc121rt1 (ENSPEMG00000029360) #33	Dnah14 (ENSPEMG00000025670) #34	Lbr (ENSPEMG00000022439) #35	Enah (ENSPEMG00000022874) #36
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##28
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##28
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##28
Chinese hamster chok1gshd	MODERN SPECIES	2	Kif28 (ENSCGRG00001022967) #9	Ahctf1 (ENSCGRG00001015843) #10	Cdc42bpa (ENSCGRG00001019928) #11	Coq8a (ENSCGRG00001022055) #12	Psen2 (ENSCGRG00001018733) #13	Itpkb (ENSCGRG00001024584) #14	Stum (ENSCGRG00001022399) #15	Parp1 (ENSCGRG00001020559) #16	Lin9 (ENSCGRG00001014165) #17	Mixl1 (ENSCGRG00001012768) #18	Acbd3 (ENSCGRG00001005103) #19	ENSCGRG00001021129 ##20	Sde2 (ENSCGRG00001018567) #21	Lefty2 (ENSCGRG00001017440) #22	Pycr2 (ENSCGRG00001024961) #23	Lefty1 (ENSCGRG00001024886) #24	Tmem63a (ENSCGRG00001022346) #25	Ephx1 (ENSCGRG00001023454) #26	9130409I23Rik (ENSCGRG00001023435) #27	ENSCGRG00001016864 #28	Nvl (ENSCGRG00001007917) #29	Cnih4 (ENSCGRG00001000385) #30	Wdr26 (ENSCGRG00001018374) #31	Cnih3 (ENSCGRG00001018492) #32	Ccdc121rt1 (ENSCGRG00001005549) #33	ENSCGRG00001009826 #34	Lbr (ENSCGRG00001022299) #35	Enah (ENSCGRG00001013627) #36	Srp9 (ENSCGRG00001008910) #37	Vmn1r1 (ENSCGRG00001010250)	Degs1 (ENSCGRG00001002610) ##28
Golden Hamster	MODERN SPECIES	697	Ahctf1 (ENSMAUG00000007505) #10	ENSMAUG00000018123	Cdc42bpa (ENSMAUG00000010864) #11	Coq8a (ENSMAUG00000016955) #12	Psen2 (ENSMAUG00000014629) #13	Itpkb (ENSMAUG00000013424) #14	Stum (ENSMAUG00000010054) #15	Parp1 (ENSMAUG00000008306) #16	Lin9 (ENSMAUG00000000458) #17	Mixl1 (ENSMAUG00000000244) #18	Acbd3 (ENSMAUG00000008514) #19	ENSMAUG00000019811 ##20	Sde2 (ENSMAUG00000019326) #21	Lefty2 (ENSMAUG00000018742) #22	Pycr2 (ENSMAUG00000017705) #23	Lefty1 (ENSMAUG00000009066) #24	ENSMAUG00000007599	ENSMAUG00000003804 #27	Nvl (ENSMAUG00000015157) #29	Cnih4 (ENSMAUG00000012691) #30	Wdr26 (ENSMAUG00000014280) #31	Cnih3 (ENSMAUG00000012379) #32	Ccdc121rt1 (ENSMAUG00000010926) #33	ENSMAUG00000014176 #34	Lbr (ENSMAUG00000012993) #35	Enah (ENSMAUG00000017836) #36	Srp9 (ENSMAUG00000017552) #37	Degs1 (ENSMAUG00000015951) ##28	Fbxo28 (ENSMAUG00000017511)	Trp53bp2 (ENSMAUG00000016823)	Capn2 (ENSMAUG00000012201)
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##28
Prairie vole	MODERN SPECIES	14	Kif28 (ENSMOCG00000022053) #9	Ahctf1 (ENSMOCG00000004774) #10	Cdc42bpa (ENSMOCG00000019771) #11	Coq8a (ENSMOCG00000022622) #12	Psen2 (ENSMOCG00000021854) #13	Itpkb (ENSMOCG00000002630) #14	Stum (ENSMOCG00000020677) #15	Parp1 (ENSMOCG00000014315) #16	Lin9 (ENSMOCG00000021496) #17	Mixl1 (ENSMOCG00000022650) #18	Acbd3 (ENSMOCG00000021409) #19	ENSMOCG00000017501 ##20	Sde2 (ENSMOCG00000003863) #21	Lefty2 (ENSMOCG00000020511) #22	Pycr2 (ENSMOCG00000000522) #23	Lefty1 (ENSMOCG00000013803) #24	Tmem63a (ENSMOCG00000010850) #25	ENSMOCG00000002922 #26	9130409I23Rik (ENSMOCG00000021672) #27	Nvl (ENSMOCG00000017466) #29	Cnih4 (ENSMOCG00000014531) #30	Wdr26 (ENSMOCG00000018920) #31	Cnih3 (ENSMOCG00000011071) #32	ENSMOCG00000011930 #34	ENSMOCG00000009557	Enah (ENSMOCG00000016095) #36	ENSMOCG00000004862	ENSMOCG00000019142	Srp9 (ENSMOCG00000012590) #37	Degs1 (ENSMOCG00000021480) ##28	Fbxo28 (ENSMOCG00000006258)
Northern American deer mouse	MODERN SPECIES	2	ENSPEMG00000016591	Ahctf1 (ENSPEMG00000000305) #10	Cdc42bpa (ENSPEMG00000016582) #11	Coq8a (ENSPEMG00000010057) #12	Psen2 (ENSPEMG00000006562) #13	Itpkb (ENSPEMG00000000832) #14	Stum (ENSPEMG00000000087) #15	Parp1 (ENSPEMG00000020230) #16	Lin9 (ENSPEMG00000020176) #17	Mixl1 (ENSPEMG00000020007) #18	Acbd3 (ENSPEMG00000019971) #19	ENSPEMG00000019940 ##20	Sde2 (ENSPEMG00000001047) #21	Lefty2 (ENSPEMG00000018991) #22	Pycr2 (ENSPEMG00000018727) #23	Lefty1 (ENSPEMG00000026696) #24	Tmem63a (ENSPEMG00000016310) #25	ENSPEMG00000024494 #26	ENSPEMG00000025705 #26	9130409I23Rik (ENSPEMG00000011902) #27	ENSPEMG00000025337 #28	Nvl (ENSPEMG00000001236) #29	Cnih4 (ENSPEMG00000012374) #30	Wdr26 (ENSPEMG00000010249) #31	Cnih3 (ENSPEMG00000008307) #32	Ccdc121rt1 (ENSPEMG00000029360) #33	Dnah14 (ENSPEMG00000025670) #34	Lbr (ENSPEMG00000022439) #35	Enah (ENSPEMG00000022874) #36	Srp9 (ENSPEMG00000022774) #37	Vmn1r1 (ENSPEMG00000030686)
Murinae	ANCESTRAL SPECIES	11	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##28
Mus	ANCESTRAL SPECIES	5	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##28
Mus_A	ANCESTRAL SPECIES	5	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##28
Mus_B	ANCESTRAL SPECIES	7	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00390000010056.y.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##28
Mouse	MODERN SPECIES		Kif28 (ENSMUSG00000087236) #9	Ahctf1 (ENSMUSG00000026491) #10	Cdc42bpa (ENSMUSG00000026490) #11	Coq8a (ENSMUSG00000026489) #12	Psen2 (ENSMUSG00000010609) #13	Itpkb (ENSMUSG00000038855) #14	Stum (ENSMUSG00000053963) #15	Parp1 (ENSMUSG00000026496) #16	Lin9 (ENSMUSG00000058729) #17	Mixl1 (ENSMUSG00000026497) #18	Acbd3 (ENSMUSG00000026499) #19	H3f3a (ENSMUSG00000060743) #20	Sde2 (ENSMUSG00000038806) #21	Lefty2 (ENSMUSG00000066652) #22	Pycr2 (ENSMUSG00000026520) #23	Lefty1 (ENSMUSG00000038793) #24	Tmem63a (ENSMUSG00000026519) #25	Ephx1 (ENSMUSG00000038776) #26	9130409I23Rik (ENSMUSG00000038768) #27	Nvl (ENSMUSG00000026516) #29	Cnih4 (ENSMUSG00000062169) #30	Wdr26 (ENSMUSG00000038733) #31	Cnih3 (ENSMUSG00000026514) #32	Ccdc121rt1 (ENSMUSG00000050625) #33	Dnah14 (ENSMUSG00000047369) #34	Lbr (ENSMUSG00000004880) #35	Enah (ENSMUSG00000022995) #36	Srp9 (ENSMUSG00000026511) #37	Vmn1r1 (ENSMUSG00000091013)	Degs1 (ENSMUSG00000038633) ##28	Fbxo28 (ENSMUSG00000047539)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188.u #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT01000000214622.a.a.a #33	ENSGT00940000160505 #34	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##28
Steppe mouse	MODERN SPECIES	3304	Ahctf1 (ENSMSIG00000005983) #10	ENSMSIG00000006134	Cdc42bpa (ENSMSIG00000006204) #11	Coq8a (ENSMSIG00000007186) #12	Psen2 (ENSMSIG00000007254) #13	Itpkb (ENSMSIG00000007328) #14	Stum (ENSMSIG00000007366) #15	Parp1 (ENSMSIG00000007405) #16	ENSMSIG00000007488 #17	Mixl1 (ENSMSIG00000007539) #18	Acbd3 (ENSMSIG00000007560) #19	ENSMSIG00000007594 ##20	Sde2 (ENSMSIG00000007635) #21	Lefty2 (ENSMSIG00000007680) #22	Pycr2 (ENSMSIG00000007693) #23	Lefty1 (ENSMSIG00000007710) #24	Tmem63a (ENSMSIG00000007714) #25	Ephx1 (ENSMSIG00000007746) #26	ENSMSIG00000007797	ENSMSIG00000007826	9130409I23Rik (ENSMSIG00000007843) #27	ENSMSIG00000007861 #28	Nvl (ENSMSIG00000007946) #29	ENSMSIG00000008071 #30	Wdr26 (ENSMSIG00000008106) #31	ENSMSIG00000008233	Cnih3 (ENSMSIG00000008251) #32	Ccdc121rt1 (ENSMSIG00000008319) #33	Dnah14 (ENSMSIG00000008331) #34	Lbr (ENSMSIG00000008545) #35	Enah (ENSMSIG00000008601) #36
Shrew mouse	MODERN SPECIES	18	Kif28 (MGP_PahariEiJ_G0028201) #9	MGP_PahariEiJ_G0028202 #10	MGP_PahariEiJ_G0028203	Cdc42bpa (MGP_PahariEiJ_G0028204) #11	Coq8a (MGP_PahariEiJ_G0028205) #12	Psen2 (MGP_PahariEiJ_G0028206) #13	Itpkb (MGP_PahariEiJ_G0028207) #14	Stum (MGP_PahariEiJ_G0028208) #15	MGP_PahariEiJ_G0028209 #16	Lin9 (MGP_PahariEiJ_G0028210) #17	Mixl1 (MGP_PahariEiJ_G0028211) #18	Acbd3 (MGP_PahariEiJ_G0028212) #19	MGP_PahariEiJ_G0028213 ##20	Sde2 (MGP_PahariEiJ_G0028214) #21	Lefty2 (MGP_PahariEiJ_G0028215) #22	MGP_PahariEiJ_G0028216 #24	Pycr2 (MGP_PahariEiJ_G0028217) #23	Tmem63a (MGP_PahariEiJ_G0028218) #25	MGP_PahariEiJ_G0028219 #26	9130409I23Rik (MGP_PahariEiJ_G0028220) #27	Nvl (MGP_PahariEiJ_G0028221) #29	Cnih4 (MGP_PahariEiJ_G0028222) #30	Wdr26 (MGP_PahariEiJ_G0028223) #31	Cnih3 (MGP_PahariEiJ_G0028224) #32	Ccdc121rt1 (MGP_PahariEiJ_G0028225) #33	MGP_PahariEiJ_G0028226 #34	Lbr (MGP_PahariEiJ_G0028227) #35	Enah (MGP_PahariEiJ_G0028228) #36	Srp9 (MGP_PahariEiJ_G0028229) #37	Vmn1r1 (MGP_PahariEiJ_G0028230)	Degs1 (MGP_PahariEiJ_G0028231) ##28
Rat	MODERN SPECIES	4	Kif28p (ENSRNOG00000050602) #9	Ahctf1 (ENSRNOG00000023541) #10	Cdc42bpa (ENSRNOG00000002841) #11	Coq8a (ENSRNOG00000043201) #12	Psen2 (ENSRNOG00000002879) #13	Itpkb (ENSRNOG00000002969) #14	Stum (ENSRNOG00000071066) #15	Parp1 (ENSRNOG00000003084) #16	Lin9 (ENSRNOG00000023304) #17	Mixl1 (ENSRNOG00000003176) #18	Acbd3 (ENSRNOG00000003185) #19	H3f3b (ENSRNOG00000003220) #20	Sde2 (ENSRNOG00000003247) #21	Lefty2 (ENSRNOG00000060325) #22	Pycr2 (ENSRNOG00000003267) #23	Lefty1 (ENSRNOG00000003263) #24	Tmem63a (ENSRNOG00000003310) #25	Ephx1 (ENSRNOG00000003515) #26	LOC498300 (ENSRNOG00000050163) #27	RGD1564463 (ENSRNOG00000003601) #28	Nvl (ENSRNOG00000003629) #29	Cnih4 (ENSRNOG00000003717) #30	Wdr26 (ENSRNOG00000003723) #31	Cnih3 (ENSRNOG00000022724) #32	Ccdc121rt (ENSRNOG00000022717) #33	Dnah14 (ENSRNOG00000070092) #34	Lbr (ENSRNOG00000052574) #35	Enah (ENSRNOG00000031934) #36	Srp9 (ENSRNOG00000003211) #37	Degs1 (ENSRNOG00000003223) ##28	Fbxo28 (ENSRNOG00000000066)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1795		Cdc42bpa (ENSNGAG00000016580) #11	ENSNGAG00000015462	Coq8a (ENSNGAG00000022006) #12	Psen2 (ENSNGAG00000023668) #13	ENSNGAG00000004558	Itpkb (ENSNGAG00000006387) #14	Stum (ENSNGAG00000007799) #15	Parp1 (ENSNGAG00000003885) #16	Lin9 (ENSNGAG00000010078) #17	Mixl1 (ENSNGAG00000018300) #18	Acbd3 (ENSNGAG00000019285) #19	ENSNGAG00000008728 ##20	Sde2 (ENSNGAG00000022889) #21	ENSNGAG00000006685	ENSNGAG00000023800 #24	Pycr2 (ENSNGAG00000004193) #23	ENSNGAG00000007205 #24	Tmem63a (ENSNGAG00000010999) #25	ENSNGAG00000013471 #26	ENSNGAG00000007235 #26
Upper Galilee mountains blind mole rat	MODERN SPECIES	1795	ENSNGAG00000015462	Coq8a (ENSNGAG00000022006) #12	Psen2 (ENSNGAG00000023668) #13	ENSNGAG00000004558	Itpkb (ENSNGAG00000006387) #14	Stum (ENSNGAG00000007799) #15	Parp1 (ENSNGAG00000003885) #16	Lin9 (ENSNGAG00000010078) #17	Mixl1 (ENSNGAG00000018300) #18	Acbd3 (ENSNGAG00000019285) #19	ENSNGAG00000008728 ##20	Sde2 (ENSNGAG00000022889) #21	ENSNGAG00000006685	ENSNGAG00000023800 #24	Pycr2 (ENSNGAG00000004193) #23	ENSNGAG00000007205 #24	Tmem63a (ENSNGAG00000010999) #25	ENSNGAG00000013471 #26	ENSNGAG00000007235 #26
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	51	Cnst (ENSJJAG00000019924) #7	Sccpdh (ENSJJAG00000016528) #8	Kif28 (ENSJJAG00000009428) #9	Ahctf1 (ENSJJAG00000015815) #10	Cdc42bpa (ENSJJAG00000010408) #11	Coq8a (ENSJJAG00000001225) #12	Psen2 (ENSJJAG00000023570) #13	Itpkb (ENSJJAG00000010265) #14	Stum (ENSJJAG00000021582) #15	Parp1 (ENSJJAG00000023497) #16	Lin9 (ENSJJAG00000019828) #17	ENSJJAG00000018401 #18	Acbd3 (ENSJJAG00000014401) #19	ENSJJAG00000000867 ##20	Sde2 (ENSJJAG00000002996) #21	ENSJJAG00000011178 #24	Pycr2 (ENSJJAG00000014536) #23	ENSJJAG00000009374 #24	Tmem63a (ENSJJAG00000016345) #25	Ephx1 (ENSJJAG00000022906) #26	ENSJJAG00000022098	ENSJJAG00000000689 #28	Nvl (ENSJJAG00000003012) #29	ENSJJAG00000020517 #30	Wdr26 (ENSJJAG00000019959) #31	Cnih3 (ENSJJAG00000023601) #32	Dnah14 (ENSJJAG00000023244) #34	ENSJJAG00000007609	ENSJJAG00000023116	Enah (ENSJJAG00000023846) #36	Srp9 (ENSJJAG00000016583) #37
Lesser Egyptian jerboa	MODERN SPECIES	51	Kif28 (ENSJJAG00000009428) #9	Ahctf1 (ENSJJAG00000015815) #10	Cdc42bpa (ENSJJAG00000010408) #11	Coq8a (ENSJJAG00000001225) #12	Psen2 (ENSJJAG00000023570) #13	Itpkb (ENSJJAG00000010265) #14	Stum (ENSJJAG00000021582) #15	Parp1 (ENSJJAG00000023497) #16	Lin9 (ENSJJAG00000019828) #17	ENSJJAG00000018401 #18	Acbd3 (ENSJJAG00000014401) #19	ENSJJAG00000000867 ##20	Sde2 (ENSJJAG00000002996) #21	ENSJJAG00000011178 #24	Pycr2 (ENSJJAG00000014536) #23	ENSJJAG00000009374 #24	Tmem63a (ENSJJAG00000016345) #25	Ephx1 (ENSJJAG00000022906) #26	ENSJJAG00000022098	ENSJJAG00000000689 #28	Nvl (ENSJJAG00000003012) #29	ENSJJAG00000020517 #30	Wdr26 (ENSJJAG00000019959) #31	Cnih3 (ENSJJAG00000023601) #32	Dnah14 (ENSJJAG00000023244) #34	ENSJJAG00000007609	ENSJJAG00000023116	Enah (ENSJJAG00000023846) #36	Srp9 (ENSJJAG00000016583) #37	ENSJJAG00000015313 #28	Fbxo28 (ENSJJAG00000010586)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Hystricomorpha	ANCESTRAL SPECIES	29	ENSGT00940000159420.b	ENSGT00530000063876.a	ENSGT00530000063629.a	ENSGT00940000155793	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00390000002089.a.b	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c.f #23
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000000295	ENSHGLG00000000284	LYN (ENSHGLG00000002926)	ENSHGLG00000033196	MOS (ENSHGLG00000049453)	PLAG1 (ENSHGLG00000001672)	ENSHGLG00000035038	Parp1 (ENSHGLG00000003992) #16	LIN9 (ENSHGLG00000007823) #17	MIXL1 (ENSHGLG00000045669) #18	ENSHGLG00000041314	ACBD3 (ENSHGLG00000005012) #19	ENSHGLG00000048882	ENSHGLG00000035710 ##20	SDE2 (ENSHGLG00000003670) #21	ENSHGLG00000003338 #24	ENSHGLG00000036089	ENSHGLG00000039078 #23	ENSHGLG00000006919	INTS3 (ENSHGLG00000008354)	ENSHGLG00000041750	NPR1 (ENSHGLG00000009046)	ILF2 (ENSHGLG00000004134)	SNAPIN (ENSHGLG00000043471)	ENSHGLG00000042410	CHTOP (ENSHGLG00000010389)	S100A1 (ENSHGLG00000044434)	S100A14 (ENSHGLG00000008860)	ENSHGLG00000009571	S100A3 (ENSHGLG00000033057)	S100A4 (ENSHGLG00000016459)
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00940000159420.b	ENSGT00530000063876.a	ENSGT00530000063629.a	ENSGT00940000155793	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00390000002089.a.b	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c.f #23
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00940000159420.b	ENSGT00530000063876.a	ENSGT00530000063629.a	ENSGT00940000155793	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00390000002089.a.b	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c.f #23
Degu	MODERN SPECIES	172	HHAT (ENSODEG00000006027)	KCNH1 (ENSODEG00000006391)	RCOR3 (ENSODEG00000007158)	TRAF5 (ENSODEG00000010010)	RD3 (ENSODEG00000010438)	ITPKB (ENSODEG00000006556) #14	STUM (ENSODEG00000006865) #15	PARP1 (ENSODEG00000007424) #16	LIN9 (ENSODEG00000007495) #17	ENSODEG00000006883 #18	ACBD3 (ENSODEG00000007029) #19	ENSODEG00000007126	ENSODEG00000006347 #20	ENSODEG00000006974	SDE2 (ENSODEG00000007391) #21	ENSODEG00000008453 #24	ENSODEG00000006478 #23	ENSODEG00000009205
Long-tailed chinchilla	MODERN SPECIES	196	ENSCLAG00000003749	HHAT (ENSCLAG00000003158)	ENSCLAG00000003578	KCNH1 (ENSCLAG00000003074)	RCOR3 (ENSCLAG00000002506)	TRAF5 (ENSCLAG00000005710)	ENSCLAG00000004308	ITPKB (ENSCLAG00000004247) #14	STUM (ENSCLAG00000003663) #15	PARP1 (ENSCLAG00000006637) #16	LIN9 (ENSCLAG00000005536) #17	ENSCLAG00000005251 #18	ACBD3 (ENSCLAG00000004643) #19	ENSCLAG00000003662 ##20	SDE2 (ENSCLAG00000003280) #21	ENSCLAG00000003115 #24	PYCR2 (ENSCLAG00000002964) #23
Guinea pig	MODERN SPECIES	137	HTR7 (ENSCPOG00000007482)	RPP30 (ENSCPOG00000033174)	ANKRD1 (ENSCPOG00000002565)	PCGF5 (ENSCPOG00000013156)	HECTD2 (ENSCPOG00000008922)	PPP1R3C (ENSCPOG00000038237)	RD3 (ENSCPOG00000022572)	ITPKB (ENSCPOG00000013483) #14	STUM (ENSCPOG00000031019) #15	PARP1 (ENSCPOG00000015643) #16	LIN9 (ENSCPOG00000015642) #17	ACBD3 (ENSCPOG00000007184) #19	ENSCPOG00000039202 ##20	ENSCPOG00000025231	SDE2 (ENSCPOG00000014756) #21	ENSCPOG00000014755 #24	PYCR2 (ENSCPOG00000005663) #23
Sciuridae	DUPLICATION
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Marmotini	ANCESTRAL SPECIES	21	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a.n #28	ENSGT00390000013448.a.a.m.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Marmotini_b	ANCESTRAL SPECIES	84	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a.n #28	ENSGT00390000013448.a.a.m.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Squirrel	MODERN SPECIES	126	AHCTF1 (ENSSTOG00000010795) #10	CDC42BPA (ENSSTOG00000015415) #11	COQ8A (ENSSTOG00000015395) #12	PSEN2 (ENSSTOG00000025166) #13	ENSSTOG00000033187	ITPKB (ENSSTOG00000019688) #14	STUM (ENSSTOG00000004805) #15	PARP1 (ENSSTOG00000016000) #16	LIN9 (ENSSTOG00000015992) #17	MIXL1 (ENSSTOG00000019392) #18	ACBD3 (ENSSTOG00000005981) #19	ENSSTOG00000026628 ##20	SDE2 (ENSSTOG00000012572) #21	ENSSTOG00000032692 #24	PYCR2 (ENSSTOG00000026618) #23	ENSSTOG00000024360 #24	TMEM63A (ENSSTOG00000028603) #25	EPHX1 (ENSSTOG00000026627) #26	SRP9 (ENSSTOG00000026827) #37	ENAH (ENSSTOG00000028215) #36	LBR (ENSSTOG00000005936) #35	DNAH14 (ENSSTOG00000021317) #34	CNIH3 (ENSSTOG00000028458) #32	WDR26 (ENSSTOG00000021796) #31	CNIH4 (ENSSTOG00000027396) #30	NVL (ENSSTOG00000014728) #29	ENSSTOG00000031649 #28	ENSSTOG00000021334	ENSSTOG00000025481 #28	FBXO28 (ENSSTOG00000009419)	TP53BP2 (ENSSTOG00000009398)
Arctic ground squirrel	MODERN SPECIES	325	ENSUPAG00010000500	AHCTF1 (ENSUPAG00010000506) #10	CDC42BPA (ENSUPAG00010000636) #11	COQ8A (ENSUPAG00010002144) #12	PSEN2 (ENSUPAG00010002205) #13	ITPKB (ENSUPAG00010002261) #14	STUM (ENSUPAG00010002286) #15	PARP1 (ENSUPAG00010002304) #16	LIN9 (ENSUPAG00010002320) #17	MIXL1 (ENSUPAG00010002339) #18	ACBD3 (ENSUPAG00010002347) #19	ENSUPAG00010002363 ##20	SDE2 (ENSUPAG00010002379) #21	ENSUPAG00010002390 #24	PYCR2 (ENSUPAG00010002405) #23	ENSUPAG00010002430 #24	TMEM63A (ENSUPAG00010002441) #25	EPHX1 (ENSUPAG00010002463) #26	SRP9 (ENSUPAG00010002484) #37	ENAH (ENSUPAG00010002499) #36	LBR (ENSUPAG00010002925) #35	ENSUPAG00010002965 #34	ENSUPAG00010002969 #34
Alpin marmot	MODERN SPECIES	12	CDC42BPA (ENSMMMG00000024041) #11	COQ8A (ENSMMMG00000024059) #12	PSEN2 (ENSMMMG00000024062) #13	ITPKB (ENSMMMG00000024065) #14	STUM (ENSMMMG00000024066) #15	ENSMMMG00000024067	ENSMMMG00000024068	PARP1 (ENSMMMG00000024069) #16	LIN9 (ENSMMMG00000024070) #17	MIXL1 (ENSMMMG00000024071) #18	ACBD3 (ENSMMMG00000024072) #19	ENSMMMG00000024073 ##20	SDE2 (ENSMMMG00000024074) #21	ENSMMMG00000024075 #24	PYCR2 (ENSMMMG00000024076) #23	ENSMMMG00000024077 #24	TMEM63A (ENSMMMG00000024078) #25	EPHX1 (ENSMMMG00000024079) #26	SRP9 (ENSMMMG00000024080) #37	ENAH (ENSMMMG00000024082) #36	LBR (ENSMMMG00000024148) #35	ENSMMMG00000024149 #34	ENSMMMG00000024150 #34	ENSMMMG00000024151	CNIH3 (ENSMMMG00000024152) #32	WDR26 (ENSMMMG00000024153) #31	CNIH4 (ENSMMMG00000024154) #30	NVL (ENSMMMG00000024155) #29	ENSMMMG00000024156	ENSMMMG00000024157	DEGS1 (ENSMMMG00000024159) #28
Eurasian red squirrel	MODERN SPECIES	3	ENSSVLG00005009948	COQ8A (ENSSVLG00005009997) #12	ENSSVLG00005010048	PSEN2 (ENSSVLG00005010078) #13	ITPKB (ENSSVLG00005010130) #14	STUM (ENSSVLG00005010162) #15	PARP1 (ENSSVLG00005010193) #16	ENSSVLG00005010227	ENSSVLG00005010350 #17	MIXL1 (ENSSVLG00005010553) #18	ACBD3 (ENSSVLG00005010595) #19	ENSSVLG00005010668 ##20	SDE2 (ENSSVLG00005010717) #21	ENSSVLG00005010786 #24	PYCR2 (ENSSVLG00005010901) #23	ENSSVLG00005010994 #24	TMEM63A (ENSSVLG00005011067) #25	EPHX1 (ENSSVLG00005011131) #26	SRP9 (ENSSVLG00005011178) #37	ENAH (ENSSVLG00005011282) #36	BOP1 (ENSSVLG00005011521)	ENSSVLG00005011588	ENSSVLG00005011663	ENSSVLG00005011720	ENSSVLG00005011796	LBR (ENSSVLG00005012135) #35	ENSSVLG00005012197 #34	ENSSVLG00005012320 #34	ENSSVLG00005012453	CNIH3 (ENSSVLG00005012576) #32	WDR26 (ENSSVLG00005012677) #31
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970
Marmotini	ANCESTRAL SPECIES	21	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a.n #28	ENSGT00390000013448.a.a.m.a #28
Marmotini_b	ANCESTRAL SPECIES	84	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a.n #28	ENSGT00390000013448.a.a.m.a #28	ENSGT00390000002970
Arctic ground squirrel	MODERN SPECIES	325			ENSUPAG00010000500	AHCTF1 (ENSUPAG00010000506) #10	CDC42BPA (ENSUPAG00010000636) #11	COQ8A (ENSUPAG00010002144) #12	PSEN2 (ENSUPAG00010002205) #13	ITPKB (ENSUPAG00010002261) #14	STUM (ENSUPAG00010002286) #15	PARP1 (ENSUPAG00010002304) #16	LIN9 (ENSUPAG00010002320) #17	MIXL1 (ENSUPAG00010002339) #18	ACBD3 (ENSUPAG00010002347) #19	ENSUPAG00010002363 ##20	SDE2 (ENSUPAG00010002379) #21	ENSUPAG00010002390 #24	PYCR2 (ENSUPAG00010002405) #23	ENSUPAG00010002430 #24	TMEM63A (ENSUPAG00010002441) #25	EPHX1 (ENSUPAG00010002463) #26	SRP9 (ENSUPAG00010002484) #37	ENAH (ENSUPAG00010002499) #36	LBR (ENSUPAG00010002925) #35	ENSUPAG00010002965 #34	ENSUPAG00010002969 #34
Squirrel	MODERN SPECIES	126	SCCPDH (ENSSTOG00000007502) #8	ENSSTOG00000021998 #9	AHCTF1 (ENSSTOG00000010795) #10	CDC42BPA (ENSSTOG00000015415) #11	COQ8A (ENSSTOG00000015395) #12	PSEN2 (ENSSTOG00000025166) #13	ENSSTOG00000033187	ITPKB (ENSSTOG00000019688) #14	STUM (ENSSTOG00000004805) #15	PARP1 (ENSSTOG00000016000) #16	LIN9 (ENSSTOG00000015992) #17	MIXL1 (ENSSTOG00000019392) #18	ACBD3 (ENSSTOG00000005981) #19	ENSSTOG00000026628 ##20	SDE2 (ENSSTOG00000012572) #21	ENSSTOG00000032692 #24	PYCR2 (ENSSTOG00000026618) #23	ENSSTOG00000024360 #24	TMEM63A (ENSSTOG00000028603) #25	EPHX1 (ENSSTOG00000026627) #26	SRP9 (ENSSTOG00000026827) #37	ENAH (ENSSTOG00000028215) #36	LBR (ENSSTOG00000005936) #35	DNAH14 (ENSSTOG00000021317) #34	CNIH3 (ENSSTOG00000028458) #32	WDR26 (ENSSTOG00000021796) #31	CNIH4 (ENSSTOG00000027396) #30	NVL (ENSSTOG00000014728) #29	ENSSTOG00000031649 #28	ENSSTOG00000021334	ENSSTOG00000025481 #28
Alpin marmot	MODERN SPECIES	12	ENSMMMG00000024027	AHCTF1 (ENSMMMG00000024028) #10	CDC42BPA (ENSMMMG00000024041) #11	COQ8A (ENSMMMG00000024059) #12	PSEN2 (ENSMMMG00000024062) #13	ITPKB (ENSMMMG00000024065) #14	STUM (ENSMMMG00000024066) #15	ENSMMMG00000024067	ENSMMMG00000024068	PARP1 (ENSMMMG00000024069) #16	LIN9 (ENSMMMG00000024070) #17	MIXL1 (ENSMMMG00000024071) #18	ACBD3 (ENSMMMG00000024072) #19	ENSMMMG00000024073 ##20	SDE2 (ENSMMMG00000024074) #21	ENSMMMG00000024075 #24	PYCR2 (ENSMMMG00000024076) #23	ENSMMMG00000024077 #24	TMEM63A (ENSMMMG00000024078) #25	EPHX1 (ENSMMMG00000024079) #26	SRP9 (ENSMMMG00000024080) #37	ENAH (ENSMMMG00000024082) #36	LBR (ENSMMMG00000024148) #35	ENSMMMG00000024149 #34	ENSMMMG00000024150 #34	ENSMMMG00000024151	CNIH3 (ENSMMMG00000024152) #32	WDR26 (ENSMMMG00000024153) #31	CNIH4 (ENSMMMG00000024154) #30	NVL (ENSMMMG00000024155) #29	ENSMMMG00000024156
Eurasian red squirrel	MODERN SPECIES	3	AHCTF1 (ENSSVLG00005009197) #10	CDC42BPA (ENSSVLG00005009702) #11	ENSSVLG00005009948	COQ8A (ENSSVLG00005009997) #12	ENSSVLG00005010048	PSEN2 (ENSSVLG00005010078) #13	ITPKB (ENSSVLG00005010130) #14	STUM (ENSSVLG00005010162) #15	PARP1 (ENSSVLG00005010193) #16	ENSSVLG00005010227	ENSSVLG00005010350 #17	MIXL1 (ENSSVLG00005010553) #18	ACBD3 (ENSSVLG00005010595) #19	ENSSVLG00005010668 ##20	SDE2 (ENSSVLG00005010717) #21	ENSSVLG00005010786 #24	PYCR2 (ENSSVLG00005010901) #23	ENSSVLG00005010994 #24	TMEM63A (ENSSVLG00005011067) #25	EPHX1 (ENSSVLG00005011131) #26	SRP9 (ENSSVLG00005011178) #37	ENAH (ENSSVLG00005011282) #36	BOP1 (ENSSVLG00005011521)	ENSSVLG00005011588	ENSSVLG00005011663	ENSSVLG00005011720	ENSSVLG00005011796	LBR (ENSSVLG00005012135) #35	ENSSVLG00005012197 #34	ENSSVLG00005012320 #34	ENSSVLG00005012453
Lagomorpha	ANCESTRAL SPECIES	199										ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	7	CAPN2 (ENSOCUG00000004612)	TP53BP2 (ENSOCUG00000004626)	FBXO28 (ENSOCUG00000004012)	ENSOCUG00000023942 #28	NVL (ENSOCUG00000005530) #29	CNIH4 (ENSOCUG00000000520) #30	WDR26 (ENSOCUG00000003294) #31	CNIH3 (ENSOCUG00000007694) #32	PARP1 (ENSOCUG00000017820) #16	LIN9 (ENSOCUG00000010028) #17	ENSOCUG00000022544	MIXL1 (ENSOCUG00000000103) #18	ACBD3 (ENSOCUG00000014391) #19	ENSOCUG00000024644 ##20	SDE2 (ENSOCUG00000001919) #21	ENSOCUG00000023218 #24	PYCR2 (ENSOCUG00000001915) #23	ENSOCUG00000021555 #24	TMEM63A (ENSOCUG00000001907) #25	EPHX1 (ENSOCUG00000011934) #26	SRP9 (ENSOCUG00000010791) #37	ENAH (ENSOCUG00000002299) #36	LBR (ENSOCUG00000000285) #35	ENSOCUG00000032314 #34	ENSOCUG00000038705 #34	ENSOCUG00000030155	ITPKB (ENSOCUG00000004970) #14	ENSOCUG00000029073 #15	ENSOCUG00000032837	ENSOCUG00000024367	ENSOCUG00000016466
Rabbit	MODERN SPECIES	7	MEIG1 (ENSOCUG00000010165)	ENSOCUG00000021476	ENSOCUG00000016466	ENSOCUG00000024367	ENSOCUG00000032837	ENSOCUG00000029073 #15	ITPKB (ENSOCUG00000004970) #14	ENSOCUG00000030155	ENSOCUG00000038705 #34	ENSOCUG00000032314 #34	LBR (ENSOCUG00000000285) #35	ENAH (ENSOCUG00000002299) #36	SRP9 (ENSOCUG00000010791) #37	EPHX1 (ENSOCUG00000011934) #26	TMEM63A (ENSOCUG00000001907) #25	ENSOCUG00000021555 #24	PYCR2 (ENSOCUG00000001915) #23	ENSOCUG00000023218 #24	SDE2 (ENSOCUG00000001919) #21	ENSOCUG00000024644 ##20	ACBD3 (ENSOCUG00000014391) #19	MIXL1 (ENSOCUG00000000103) #18	ENSOCUG00000022544	LIN9 (ENSOCUG00000010028) #17	PARP1 (ENSOCUG00000017820) #16	CNIH3 (ENSOCUG00000007694) #32	WDR26 (ENSOCUG00000003294) #31	CNIH4 (ENSOCUG00000000520) #30	NVL (ENSOCUG00000005530) #29	ENSOCUG00000023942 #28	FBXO28 (ENSOCUG00000004012)
Pika	MODERN SPECIES	1847																ENSOPRG00000012162 #24
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	8788																ENSTBEG00000008328 #24	PYCR2 (ENSTBEG00000008382) #23
Tree shrew	MODERN SPECIES	2144																ENSTBEG00000000002 #24
Primates	ANCESTRAL SPECIES	7	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Haplorrhini	ANCESTRAL SPECIES	7				ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Simiiformes	ANCESTRAL SPECIES	8				ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Platyrrhini	ANCESTRAL SPECIES	24	ENSGT00940000157464	ENSGT00910000146652	ENSGT00940000156644	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00390000001627.f	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Cebidae	DUPLICATION
Cebidae	ANCESTRAL SPECIES	23	ENSGT00390000003512	ENSGT00940000157464	ENSGT00940000156644	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00390000001627.f	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.k #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.l #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970.s.a	ENSGT00940000153463.b
Marmoset	MODERN SPECIES	10	RHOU (ENSCJAG00000046177)	ENSCJAG00000075541	CDC42BPA (ENSCJAG00000012980) #11	COQ8A (ENSCJAG00000012948) #12	PSEN2 (ENSCJAG00000012908) #13	ITPKB (ENSCJAG00000012894) #14	STUM (ENSCJAG00000012889) #15	PARP1 (ENSCJAG00000012831) #16	LIN9 (ENSCJAG00000012743) #17	ENSCJAG00000023047	MIXL1 (ENSCJAG00000012740) #18	ACBD3 (ENSCJAG00000038924) #19	ENSCJAG00000085157 #20	SDE2 (ENSCJAG00000012685) #21	ENSCJAG00000083204	ENSCJAG00000074352 #24	PYCR2 (ENSCJAG00000035770) #23	ENSCJAG00000081248 #24	TMEM63A (ENSCJAG00000012604) #25	EPHX1 (ENSCJAG00000012582) #26	ENSCJAG00000074178	SRP9 (ENSCJAG00000040095) #37	ENSCJAG00000057654	ENAH (ENSCJAG00000012510) #36	LBR (ENSCJAG00000004629) #35	ASPM (ENSCJAG00000004680)	ZBTB41 (ENSCJAG00000004794)	CRB1 (ENSCJAG00000004825)	ENSCJAG00000076740	ENSCJAG00000082951	DENND1B (ENSCJAG00000004852)
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00390000003512	ENSGT00940000157464	ENSGT00940000156644	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00390000001627.f	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.k #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.l #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970.s.a	ENSGT00940000153463.b
Capuchin	MODERN SPECIES	42	RAB4A (ENSCCAG00000024652)	RHOU (ENSCCAG00000011687)	CDC42BPA (ENSCCAG00000037751) #11	COQ8A (ENSCCAG00000028650) #12	ENSCCAG00000037794	PSEN2 (ENSCCAG00000037653) #13	ENSCCAG00000035298	ITPKB (ENSCCAG00000017443) #14	STUM (ENSCCAG00000027365) #15	PARP1 (ENSCCAG00000033484) #16	LIN9 (ENSCCAG00000024893) #17	MIXL1 (ENSCCAG00000030603) #18	ACBD3 (ENSCCAG00000029038) #19	ENSCCAG00000021678 ##20	SDE2 (ENSCCAG00000033106) #21	ENSCCAG00000024966 #24	PYCR2 (ENSCCAG00000029202) #23	ENSCCAG00000030395 #24	TMEM63A (ENSCCAG00000022581) #25	EPHX1 (ENSCCAG00000024699) #26	SRP9 (ENSCCAG00000034464) #37	ENSCCAG00000025068	ENAH (ENSCCAG00000026712) #36	LBR (ENSCCAG00000018433) #35	ENSCCAG00000017821	DNAH14 (ENSCCAG00000023187) #34	ENSCCAG00000023109	CNIH3 (ENSCCAG00000018443) #32	WDR26 (ENSCCAG00000035904) #31	CNIH4 (ENSCCAG00000037449) #30	NVL (ENSCCAG00000037416) #29
Bolivian squirrel monkey	MODERN SPECIES	79				CDC42BPA (ENSSBOG00000035079) #11	COQ8A (ENSSBOG00000030114) #12	PSEN2 (ENSSBOG00000028763) #13	ITPKB (ENSSBOG00000029300) #14	STUM (ENSSBOG00000035359) #15	ENSSBOG00000010799	PARP1 (ENSSBOG00000010144) #16	LIN9 (ENSSBOG00000034500) #17	MIXL1 (ENSSBOG00000030522) #18	ACBD3 (ENSSBOG00000033136) #19	ENSSBOG00000034792 #20	SDE2 (ENSSBOG00000023524) #21	ENSSBOG00000024940 #24	PYCR2 (ENSSBOG00000030067) #23	ENSSBOG00000025223 #24	TMEM63A (ENSSBOG00000034751) #25	EPHX1 (ENSSBOG00000019277) #26	SRP9 (ENSSBOG00000034573) #37	ENAH (ENSSBOG00000032372) #36	LBR (ENSSBOG00000032928) #35	DNAH14 (ENSSBOG00000027125) #34	ENSSBOG00000028635	ENSSBOG00000030414	ENSSBOG00000026740	CNIH3 (ENSSBOG00000028177) #32	WDR26 (ENSSBOG00000031377) #31	CNIH4 (ENSSBOG00000031048) #30	NVL (ENSSBOG00000034666) #29
Cebidae	ANCESTRAL SPECIES	23	ENSGT00940000156644	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00390000001627.f	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.k #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.l #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970.s.a	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Marmoset	MODERN SPECIES	10	CDC42BPA (ENSCJAG00000012980) #11	COQ8A (ENSCJAG00000012948) #12	PSEN2 (ENSCJAG00000012908) #13	ITPKB (ENSCJAG00000012894) #14	STUM (ENSCJAG00000012889) #15	PARP1 (ENSCJAG00000012831) #16	LIN9 (ENSCJAG00000012743) #17	ENSCJAG00000023047	MIXL1 (ENSCJAG00000012740) #18	ACBD3 (ENSCJAG00000038924) #19	ENSCJAG00000085157 #20	SDE2 (ENSCJAG00000012685) #21	ENSCJAG00000083204	ENSCJAG00000074352 #24	PYCR2 (ENSCJAG00000035770) #23	ENSCJAG00000081248 #24	TMEM63A (ENSCJAG00000012604) #25	EPHX1 (ENSCJAG00000012582) #26	ENSCJAG00000074178	SRP9 (ENSCJAG00000040095) #37	ENSCJAG00000057654	ENAH (ENSCJAG00000012510) #36	LBR (ENSCJAG00000004629) #35	ASPM (ENSCJAG00000004680)	ZBTB41 (ENSCJAG00000004794)	CRB1 (ENSCJAG00000004825)	ENSCJAG00000076740	ENSCJAG00000082951	DENND1B (ENSCJAG00000004852)	ENSCJAG00000058085	C1orf53 (ENSCJAG00000004910)
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00940000156644	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00390000001627.f	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.k #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.l #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970.s.a	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Capuchin	MODERN SPECIES	42	CDC42BPA (ENSCCAG00000037751) #11	COQ8A (ENSCCAG00000028650) #12	ENSCCAG00000037794	PSEN2 (ENSCCAG00000037653) #13	ENSCCAG00000035298	ITPKB (ENSCCAG00000017443) #14	STUM (ENSCCAG00000027365) #15	PARP1 (ENSCCAG00000033484) #16	LIN9 (ENSCCAG00000024893) #17	MIXL1 (ENSCCAG00000030603) #18	ACBD3 (ENSCCAG00000029038) #19	ENSCCAG00000021678 ##20	SDE2 (ENSCCAG00000033106) #21	ENSCCAG00000024966 #24	PYCR2 (ENSCCAG00000029202) #23	ENSCCAG00000030395 #24	TMEM63A (ENSCCAG00000022581) #25	EPHX1 (ENSCCAG00000024699) #26	SRP9 (ENSCCAG00000034464) #37	ENSCCAG00000025068	ENAH (ENSCCAG00000026712) #36	LBR (ENSCCAG00000018433) #35	ENSCCAG00000017821	DNAH14 (ENSCCAG00000023187) #34	ENSCCAG00000023109	CNIH3 (ENSCCAG00000018443) #32	WDR26 (ENSCCAG00000035904) #31	CNIH4 (ENSCCAG00000037449) #30	NVL (ENSCCAG00000037416) #29	DEGS1 (ENSCCAG00000037018) #28	FBXO28 (ENSCCAG00000019791)
Bolivian squirrel monkey	MODERN SPECIES	79		CDC42BPA (ENSSBOG00000035079) #11	COQ8A (ENSSBOG00000030114) #12	PSEN2 (ENSSBOG00000028763) #13	ITPKB (ENSSBOG00000029300) #14	STUM (ENSSBOG00000035359) #15	ENSSBOG00000010799	PARP1 (ENSSBOG00000010144) #16	LIN9 (ENSSBOG00000034500) #17	MIXL1 (ENSSBOG00000030522) #18	ACBD3 (ENSSBOG00000033136) #19	ENSSBOG00000034792 #20	SDE2 (ENSSBOG00000023524) #21	ENSSBOG00000024940 #24	PYCR2 (ENSSBOG00000030067) #23	ENSSBOG00000025223 #24	TMEM63A (ENSSBOG00000034751) #25	EPHX1 (ENSSBOG00000019277) #26	SRP9 (ENSSBOG00000034573) #37	ENAH (ENSSBOG00000032372) #36	LBR (ENSSBOG00000032928) #35	DNAH14 (ENSSBOG00000027125) #34	ENSSBOG00000028635	ENSSBOG00000030414	ENSSBOG00000026740	CNIH3 (ENSSBOG00000028177) #32	WDR26 (ENSSBOG00000031377) #31	CNIH4 (ENSSBOG00000031048) #30	NVL (ENSSBOG00000034666) #29	ENSSBOG00000019803	DEGS1 (ENSSBOG00000031189) #28
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	958	RHOU (ENSANAG00000023279)	ENSANAG00000028192	CDC42BPA (ENSANAG00000030280) #11	COQ8A (ENSANAG00000027573) #12	ENSANAG00000020132	PSEN2 (ENSANAG00000028143) #13	ITPKB (ENSANAG00000024650) #14	STUM (ENSANAG00000027408) #15	PARP1 (ENSANAG00000032699) #16	LIN9 (ENSANAG00000004587) #17	MIXL1 (ENSANAG00000029392) #18	ACBD3 (ENSANAG00000034586) #19	ENSANAG00000017653	ENSANAG00000022092 #20	SDE2 (ENSANAG00000028299) #21	ENSANAG00000030058 #24	PYCR2 (ENSANAG00000027686) #23	ENSANAG00000029521 #24	TMEM63A (ENSANAG00000020164) #25	EPHX1 (ENSANAG00000027514) #26	SRP9 (ENSANAG00000022626) #37	ENSANAG00000027368 #36	LBR (ENSANAG00000021538) #35	ENSANAG00000037634 #34	ENSANAG00000029822	CNIH3 (ENSANAG00000035993) #32	ENSANAG00000017155	WDR26 (ENSANAG00000028722) #31	CNIH4 (ENSANAG00000022995) #30	ENSANAG00000015743	NVL (ENSANAG00000026330) #29
Mas night monkey	MODERN SPECIES	958	CDC42BPA (ENSANAG00000030280) #11	COQ8A (ENSANAG00000027573) #12	ENSANAG00000020132	PSEN2 (ENSANAG00000028143) #13	ITPKB (ENSANAG00000024650) #14	STUM (ENSANAG00000027408) #15	PARP1 (ENSANAG00000032699) #16	LIN9 (ENSANAG00000004587) #17	MIXL1 (ENSANAG00000029392) #18	ACBD3 (ENSANAG00000034586) #19	ENSANAG00000017653	ENSANAG00000022092 #20	SDE2 (ENSANAG00000028299) #21	ENSANAG00000030058 #24	PYCR2 (ENSANAG00000027686) #23	ENSANAG00000029521 #24	TMEM63A (ENSANAG00000020164) #25	EPHX1 (ENSANAG00000027514) #26	SRP9 (ENSANAG00000022626) #37	ENSANAG00000027368 #36	LBR (ENSANAG00000021538) #35	ENSANAG00000037634 #34	ENSANAG00000029822	CNIH3 (ENSANAG00000035993) #32	ENSANAG00000017155	WDR26 (ENSANAG00000028722) #31	CNIH4 (ENSANAG00000022995) #30	ENSANAG00000015743	NVL (ENSANAG00000026330) #29	DEGS1 (ENSANAG00000027303) #28	FBXO28 (ENSANAG00000023391)
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00910000148176	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00390000018665.d
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT01090000260030.b	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00390000018665.d
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT01090000260030.b	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00390000018665.d
Macaca	ANCESTRAL SPECIES		ENSGT00940000159380	ENSGT01090000260030.b	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT01030000238203	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00940000161627.a.b.a.a.b	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00950000183105.B.a.a.b	ENSGT00530000063651.a #19	ENSGT01040000240755.A.b.b.a	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00950000183044.a.a.a.c.d #23	ENSGT00390000010056.p #24	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.a.a ##37	ENSGT00940000173703	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Rhesus	MODERN SPECIES		COQ8A (ENSMMUG00000008636) #12	PSEN2 (ENSMMUG00000018525) #13	ITPKB (ENSMMUG00000061649) #14	STUM (ENSMMUG00000008640) #15	PARP1 (ENSMMUG00000021820) #16	ENSMMUG00000050685	LIN9 (ENSMMUG00000016014) #17	MIXL1 (ENSMMUG00000005129) #18	ENSMMUG00000063956	ACBD3 (ENSMMUG00000019058) #19	ENSMMUG00000059492	H3-3A (ENSMMUG00000055584) #20	SDE2 (ENSMMUG00000042699) #21	ENSMMUG00000056097	ENSMMUG00000011435 #24	PYCR2 (ENSMMUG00000011434) #24	TMEM63A (ENSMMUG00000005785) #25	EPHX1 (ENSMMUG00000005782) #26	SRP9 (ENSMMUG00000000134) ##37	ENAH (ENSMMUG00000002227) #36	LBR (ENSMMUG00000003472) #35	ENSMMUG00000051471	ENSMMUG00000060677	CNIH3 (ENSMMUG00000010335) #32	WDR26 (ENSMMUG00000012227) #31	CNIH4 (ENSMMUG00000063959) #30	NVL (ENSMMUG00000022510) #29	DEGS1 (ENSMMUG00000002400) #28	FBXO28 (ENSMMUG00000000676)	TP53BP2 (ENSMMUG00000011146)	CAPN2 (ENSMMUG00000011142)
Pig-tailed macaque	MODERN SPECIES	102	ENSMNEG00000033665	CDC42BPA (ENSMNEG00000034215) #11	COQ8A (ENSMNEG00000037185) #12	PSEN2 (ENSMNEG00000035904) #13	ITPKB (ENSMNEG00000032813) #14	STUM (ENSMNEG00000036609) #15	PARP1 (ENSMNEG00000034074) #16	LIN9 (ENSMNEG00000038790) #17	MIXL1 (ENSMNEG00000041606) #18	ENSMNEG00000041334	ACBD3 (ENSMNEG00000039320) #19	ENSMNEG00000029530 ##20	SDE2 (ENSMNEG00000038615) #21	ENSMNEG00000042256 #24	PYCR2 (ENSMNEG00000033158) #23	ENSMNEG00000035765 #24	TMEM63A (ENSMNEG00000035779) #25	EPHX1 (ENSMNEG00000041552) #26	SRP9 (ENSMNEG00000043512) #37	ENAH (ENSMNEG00000033447) #36	LBR (ENSMNEG00000008692) #35	ENSMNEG00000043544 #34	ENSMNEG00000034880	CNIH3 (ENSMNEG00000035965) #32	WDR26 (ENSMNEG00000031309) #31	CNIH4 (ENSMNEG00000041190) #30	NVL (ENSMNEG00000042774) #29	DEGS1 (ENSMNEG00000028734) #28	FBXO28 (ENSMNEG00000034283)	ENSMNEG00000029327	ENSMNEG00000041225
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00390000010283.`b.a.a.d	ENSGT00390000018665.d
Cercopithecinae_d	ANCESTRAL SPECIES	67			ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00390000010283.`b.a.a.d	ENSGT00390000018665.d
Drill	MODERN SPECIES	1249					ITPKB (ENSMLEG00000039007) #14	STUM (ENSMLEG00000013254) #15	PARP1 (ENSMLEG00000012344) #16	LIN9 (ENSMLEG00000030007) #17	MIXL1 (ENSMLEG00000030344) #18	ENSMLEG00000042005	ACBD3 (ENSMLEG00000037935) #19	ENSMLEG00000041187 ##20	SDE2 (ENSMLEG00000043885) #21	ENSMLEG00000043622 #24	PYCR2 (ENSMLEG00000038897) #23	ENSMLEG00000030559 #24	TMEM63A (ENSMLEG00000029246) #25	EPHX1 (ENSMLEG00000036654) #26	SRP9 (ENSMLEG00000037309) #37	ENAH (ENSMLEG00000039485) #36	LBR (ENSMLEG00000030506) #35	ENSMLEG00000032583 #34
Sooty mangabey	MODERN SPECIES	513			CDC42BPA (ENSCATG00000036374) #11	COQ8A (ENSCATG00000005294) #12	PSEN2 (ENSCATG00000043861) #13	ITPKB (ENSCATG00000031660) #14	STUM (ENSCATG00000035656) #15	PARP1 (ENSCATG00000038981) #16	LIN9 (ENSCATG00000035907) #17	MIXL1 (ENSCATG00000042419) #18	ACBD3 (ENSCATG00000043891) #19	H3-3A (ENSCATG00000036239) #20	SDE2 (ENSCATG00000035151) #21	ENSCATG00000038680 #24	PYCR2 (ENSCATG00000045074) #23	ENSCATG00000019235 #24	TMEM63A (ENSCATG00000039227) #25	EPHX1 (ENSCATG00000039564) #26	SRP9 (ENSCATG00000041813) #37	ENAH (ENSCATG00000006720) #36	LBR (ENSCATG00000031289) #35	DNAH14 (ENSCATG00000039957) #34	CNIH3 (ENSCATG00000042269) #32	ENSCATG00000030513	WDR26 (ENSCATG00000035046) #31	CNIH4 (ENSCATG00000043768) #30	NVL (ENSCATG00000040317) #29	DEGS1 (ENSCATG00000045366) #28	FBXO28 (ENSCATG00000035652)	ENSCATG00000014032	TP53BP2 (ENSCATG00000045377)
Olive baboon	MODERN SPECIES		CDC42BPA (ENSPANG00000007777) #11	COQ8A (ENSPANG00000005934) #12	PSEN2 (ENSPANG00000015683) #13	ENSPANG00000040643	ITPKB (ENSPANG00000014076) #14	ENSPANG00000042335 #15	ENSPANG00000041992	PARP1 (ENSPANG00000011198) #16	LIN9 (ENSPANG00000007503) #17	MIXL1 (ENSPANG00000007593) #18	ACBD3 (ENSPANG00000026078) #19	ENSPANG00000012291 ##20	SDE2 (ENSPANG00000017716) #21	ENSPANG00000031485 #24	PYCR2 (ENSPANG00000013395) #23	ENSPANG00000023521 #24	TMEM63A (ENSPANG00000009888) #25	EPHX1 (ENSPANG00000014172) #26	SRP9 (ENSPANG00000030164) #37	ENAH (ENSPANG00000007502) #36	LBR (ENSPANG00000006165) #35	ENSPANG00000043776	CNIH3 (ENSPANG00000016366) #32	ENSPANG00000030716	ENSPANG00000038502	WDR26 (ENSPANG00000012516) #31	CNIH4 (ENSPANG00000012290) #30	NVL (ENSPANG00000008349) #29	ENSPANG00000046984	DEGS1 (ENSPANG00000021909) #28	FBXO28 (ENSPANG00000035917)
Vervet Monkey	MODERN SPECIES	17	SNAP47 (ENSCSAG00000016423)	JMJD4 (ENSCSAG00000016420)	ENSCSAG00000016411	CDC42BPA (ENSCSAG00000016402) #11	COQ8A (ENSCSAG00000016382) #12	PSEN2 (ENSCSAG00000016372) #13	ITPKB (ENSCSAG00000016366) #14	STUM (ENSCSAG00000016358) #15	PARP1 (ENSCSAG00000016354) #16	LIN9 (ENSCSAG00000016351) #17	MIXL1 (ENSCSAG00000016345) #18	ACBD3 (ENSCSAG00000016340) #19	SDE2 (ENSCSAG00000016332) #21	ENSCSAG00000016323 #24	PYCR2 (ENSCSAG00000016314) #23	ENSCSAG00000016291 #24	TMEM63A (ENSCSAG00000016284) #25	EPHX1 (ENSCSAG00000016278) #26	ENAH (ENSCSAG00000016274) #36	LBR (ENSCSAG00000016260) #35	ENSCSAG00000016221	CNIH3 (ENSCSAG00000016214) #32	WDR26 (ENSCSAG00000016208) #31	CNIH4 (ENSCSAG00000016201) #30	NVL (ENSCSAG00000016196) #29	DEGS1 (ENSCSAG00000016186) #28	FBXO28 (ENSCSAG00000016176)	ENSCSAG00000000268	TP53BP2 (ENSCSAG00000016157)	CAPN2 (ENSCSAG00000016150)	CAPN8 (ENSCSAG00000016122)
Rhinopithecus	ANCESTRAL SPECIES	245	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058.o #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00950000183105.B.a.a.b.b	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT01100000263504.a.b.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505.a #34
Golden snub-nosed monkey	MODERN SPECIES	721	CDC42BPA (ENSRROG00000029107) #11	COQ8A (ENSRROG00000034012) #12	PSEN2 (ENSRROG00000031052) #13	ITPKB (ENSRROG00000033942) #14	STUM (ENSRROG00000009500) #15	ENSRROG00000020327	PARP1 (ENSRROG00000029280) #16	LIN9 (ENSRROG00000040247) #17	MIXL1 (ENSRROG00000043159) #18	ACBD3 (ENSRROG00000040704) #19	ENSRROG00000036089	ENSRROG00000033769 ##20	SDE2 (ENSRROG00000043133) #21	ENSRROG00000040509 #24	PYCR2 (ENSRROG00000044426) #23	ENSRROG00000038435 #24	ENSRROG00000029457 #25
Black snub-nosed monkey	MODERN SPECIES	851	TM4SF20 (ENSRBIG00000041706)	MFF (ENSRBIG00000042107)	COL4A3 (ENSRBIG00000038891)	COL4A4 (ENSRBIG00000030621)	RHBDD1 (ENSRBIG00000042928)	IRS1 (ENSRBIG00000030645)	NYAP2 (ENSRBIG00000031238)	LIN9 (ENSRBIG00000043619) #17	MIXL1 (ENSRBIG00000034282) #18	ENSRBIG00000038112	ACBD3 (ENSRBIG00000037536) #19	ENSRBIG00000012976 ##20	SDE2 (ENSRBIG00000042788) #21	ENSRBIG00000036291 #24	PYCR2 (ENSRBIG00000030213) #23	ENSRBIG00000043715 #24	TMEM63A (ENSRBIG00000042914) #25	EPHX1 (ENSRBIG00000033391) #26	SRP9 (ENSRBIG00000040480) #37	ENAH (ENSRBIG00000027849) #36	LBR (ENSRBIG00000043754) #35	ENSRBIG00000032234 #34
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT01090000260030.b	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00950000182843.b	ENSGT00940000159380	ENSGT01090000260030.b	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970
Cercopithecinae_d	ANCESTRAL SPECIES	67					ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970
Drill	MODERN SPECIES	1249							ITPKB (ENSMLEG00000039007) #14	STUM (ENSMLEG00000013254) #15	PARP1 (ENSMLEG00000012344) #16	LIN9 (ENSMLEG00000030007) #17	MIXL1 (ENSMLEG00000030344) #18	ENSMLEG00000042005	ACBD3 (ENSMLEG00000037935) #19	ENSMLEG00000041187 ##20	SDE2 (ENSMLEG00000043885) #21	ENSMLEG00000043622 #24	PYCR2 (ENSMLEG00000038897) #23	ENSMLEG00000030559 #24	TMEM63A (ENSMLEG00000029246) #25	EPHX1 (ENSMLEG00000036654) #26	SRP9 (ENSMLEG00000037309) #37	ENAH (ENSMLEG00000039485) #36	LBR (ENSMLEG00000030506) #35	ENSMLEG00000032583 #34
Sooty mangabey	MODERN SPECIES	513					CDC42BPA (ENSCATG00000036374) #11	COQ8A (ENSCATG00000005294) #12	PSEN2 (ENSCATG00000043861) #13	ITPKB (ENSCATG00000031660) #14	STUM (ENSCATG00000035656) #15	PARP1 (ENSCATG00000038981) #16	LIN9 (ENSCATG00000035907) #17	MIXL1 (ENSCATG00000042419) #18	ACBD3 (ENSCATG00000043891) #19	H3-3A (ENSCATG00000036239) #20	SDE2 (ENSCATG00000035151) #21	ENSCATG00000038680 #24	PYCR2 (ENSCATG00000045074) #23	ENSCATG00000019235 #24	TMEM63A (ENSCATG00000039227) #25	EPHX1 (ENSCATG00000039564) #26	SRP9 (ENSCATG00000041813) #37	ENAH (ENSCATG00000006720) #36	LBR (ENSCATG00000031289) #35	DNAH14 (ENSCATG00000039957) #34	CNIH3 (ENSCATG00000042269) #32	ENSCATG00000030513	WDR26 (ENSCATG00000035046) #31	CNIH4 (ENSCATG00000043768) #30	NVL (ENSCATG00000040317) #29	DEGS1 (ENSCATG00000045366) #28	FBXO28 (ENSCATG00000035652)
Olive baboon	MODERN SPECIES		ENSPANG00000048924	ENSPANG00000048983	CDC42BPA (ENSPANG00000007777) #11	COQ8A (ENSPANG00000005934) #12	PSEN2 (ENSPANG00000015683) #13	ENSPANG00000040643	ITPKB (ENSPANG00000014076) #14	ENSPANG00000042335 #15	ENSPANG00000041992	PARP1 (ENSPANG00000011198) #16	LIN9 (ENSPANG00000007503) #17	MIXL1 (ENSPANG00000007593) #18	ACBD3 (ENSPANG00000026078) #19	ENSPANG00000012291 ##20	SDE2 (ENSPANG00000017716) #21	ENSPANG00000031485 #24	PYCR2 (ENSPANG00000013395) #23	ENSPANG00000023521 #24	TMEM63A (ENSPANG00000009888) #25	EPHX1 (ENSPANG00000014172) #26	SRP9 (ENSPANG00000030164) #37	ENAH (ENSPANG00000007502) #36	LBR (ENSPANG00000006165) #35	ENSPANG00000043776	CNIH3 (ENSPANG00000016366) #32	ENSPANG00000030716	ENSPANG00000038502	WDR26 (ENSPANG00000012516) #31	CNIH4 (ENSPANG00000012290) #30	NVL (ENSPANG00000008349) #29	ENSPANG00000046984
Macaca	ANCESTRAL SPECIES		ENSGT00910000148086	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT01090000260030.b	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT01030000238203	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970
Pig-tailed macaque	MODERN SPECIES	102	JMJD4 (ENSMNEG00000044011)	ZNF678 (ENSMNEG00000027914)	ENSMNEG00000033665	CDC42BPA (ENSMNEG00000034215) #11	COQ8A (ENSMNEG00000037185) #12	PSEN2 (ENSMNEG00000035904) #13	ITPKB (ENSMNEG00000032813) #14	STUM (ENSMNEG00000036609) #15	PARP1 (ENSMNEG00000034074) #16	LIN9 (ENSMNEG00000038790) #17	MIXL1 (ENSMNEG00000041606) #18	ENSMNEG00000041334	ACBD3 (ENSMNEG00000039320) #19	ENSMNEG00000029530 ##20	SDE2 (ENSMNEG00000038615) #21	ENSMNEG00000042256 #24	PYCR2 (ENSMNEG00000033158) #23	ENSMNEG00000035765 #24	TMEM63A (ENSMNEG00000035779) #25	EPHX1 (ENSMNEG00000041552) #26	SRP9 (ENSMNEG00000043512) #37	ENAH (ENSMNEG00000033447) #36	LBR (ENSMNEG00000008692) #35	ENSMNEG00000043544 #34	ENSMNEG00000034880	CNIH3 (ENSMNEG00000035965) #32	WDR26 (ENSMNEG00000031309) #31	CNIH4 (ENSMNEG00000041190) #30	NVL (ENSMNEG00000042774) #29	DEGS1 (ENSMNEG00000028734) #28	FBXO28 (ENSMNEG00000034283)
Macaca_a	ANCESTRAL SPECIES		ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00940000161627.a.b.a.a.b	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00950000183105.B.a.a.b	ENSGT00530000063651.a #19	ENSGT01040000240755.A.b.b.a	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00950000183044.a.a.a.c.d #23	ENSGT00390000010056.p #24	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.a.a ##37	ENSGT00940000173703	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000054654	ENSMFAG00000053714	ITPKB (ENSMFAG00000035876) #14	STUM (ENSMFAG00000035398) #15	PARP1 (ENSMFAG00000002526) #16	ENSMFAG00000062286	LIN9 (ENSMFAG00000001110) #17	ENSMFAG00000027604	ENSMFAG00000051300	ACBD3 (ENSMFAG00000045670) #19	ENSMFAG00000048787	ENSMFAG00000050027	ENSMFAG00000045269 ##20	SDE2 (ENSMFAG00000031291) #21	ENSMFAG00000031760 #23	ENSMFAG00000039504 #24	ENSMFAG00000051570	SRP9 (ENSMFAG00000002641) #37	ENAH (ENSMFAG00000019058) #36	LBR (ENSMFAG00000034066) #35	DNAH14 (ENSMFAG00000036618) #34	CNIH3 (ENSMFAG00000039040) #32	WDR26 (ENSMFAG00000036710) #31	CNIH4 (ENSMFAG00000003700) #30	NVL (ENSMFAG00000003164) #29	DEGS1 (ENSMFAG00000039054) #28	FBXO28 (ENSMFAG00000000604)	ENSMFAG00000003807	CAPN2 (ENSMFAG00000003091)	CAPN8 (ENSMFAG00000042857)	ENSMFAG00000039325
Rhesus	MODERN SPECIES		CDC42BPA (ENSMMUG00000008638) #11	COQ8A (ENSMMUG00000008636) #12	PSEN2 (ENSMMUG00000018525) #13	ITPKB (ENSMMUG00000061649) #14	STUM (ENSMMUG00000008640) #15	PARP1 (ENSMMUG00000021820) #16	ENSMMUG00000050685	LIN9 (ENSMMUG00000016014) #17	MIXL1 (ENSMMUG00000005129) #18	ENSMMUG00000063956	ACBD3 (ENSMMUG00000019058) #19	ENSMMUG00000059492	H3-3A (ENSMMUG00000055584) #20	SDE2 (ENSMMUG00000042699) #21	ENSMMUG00000056097	ENSMMUG00000011435 #24	PYCR2 (ENSMMUG00000011434) #24	TMEM63A (ENSMMUG00000005785) #25	EPHX1 (ENSMMUG00000005782) #26	SRP9 (ENSMMUG00000000134) ##37	ENAH (ENSMMUG00000002227) #36	LBR (ENSMMUG00000003472) #35	ENSMMUG00000051471	ENSMMUG00000060677	CNIH3 (ENSMMUG00000010335) #32	WDR26 (ENSMMUG00000012227) #31	CNIH4 (ENSMMUG00000063959) #30	NVL (ENSMMUG00000022510) #29	DEGS1 (ENSMMUG00000002400) #28	FBXO28 (ENSMMUG00000000676)	TP53BP2 (ENSMMUG00000011146)
Vervet Monkey	MODERN SPECIES	17	WNT9A (ENSCSAG00000016440)	PRSS38 (ENSCSAG00000016434)	SNAP47 (ENSCSAG00000016423)	JMJD4 (ENSCSAG00000016420)	ENSCSAG00000016411	CDC42BPA (ENSCSAG00000016402) #11	COQ8A (ENSCSAG00000016382) #12	PSEN2 (ENSCSAG00000016372) #13	ITPKB (ENSCSAG00000016366) #14	STUM (ENSCSAG00000016358) #15	PARP1 (ENSCSAG00000016354) #16	LIN9 (ENSCSAG00000016351) #17	MIXL1 (ENSCSAG00000016345) #18	ACBD3 (ENSCSAG00000016340) #19	SDE2 (ENSCSAG00000016332) #21	ENSCSAG00000016323 #24	PYCR2 (ENSCSAG00000016314) #23	ENSCSAG00000016291 #24	TMEM63A (ENSCSAG00000016284) #25	EPHX1 (ENSCSAG00000016278) #26	ENAH (ENSCSAG00000016274) #36	LBR (ENSCSAG00000016260) #35	ENSCSAG00000016221	CNIH3 (ENSCSAG00000016214) #32	WDR26 (ENSCSAG00000016208) #31	CNIH4 (ENSCSAG00000016201) #30	NVL (ENSCSAG00000016196) #29	DEGS1 (ENSCSAG00000016186) #28	FBXO28 (ENSCSAG00000016176)	ENSCSAG00000000268	TP53BP2 (ENSCSAG00000016157)
Rhinopithecus	ANCESTRAL SPECIES	245		ENSGT00910000148176	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058.o #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00950000183105.B.a.a.b.b	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT01100000263504.a.b.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505.a #34
Golden snub-nosed monkey	MODERN SPECIES	721		ENSRROG00000021333	CDC42BPA (ENSRROG00000029107) #11	COQ8A (ENSRROG00000034012) #12	PSEN2 (ENSRROG00000031052) #13	ITPKB (ENSRROG00000033942) #14	STUM (ENSRROG00000009500) #15	ENSRROG00000020327	PARP1 (ENSRROG00000029280) #16	LIN9 (ENSRROG00000040247) #17	MIXL1 (ENSRROG00000043159) #18	ACBD3 (ENSRROG00000040704) #19	ENSRROG00000036089	ENSRROG00000033769 ##20	SDE2 (ENSRROG00000043133) #21	ENSRROG00000040509 #24	PYCR2 (ENSRROG00000044426) #23	ENSRROG00000038435 #24	ENSRROG00000029457 #25
Black snub-nosed monkey	MODERN SPECIES	851	ENSRBIG00000035997	AGFG1 (ENSRBIG00000033462)	TM4SF20 (ENSRBIG00000041706)	MFF (ENSRBIG00000042107)	COL4A3 (ENSRBIG00000038891)	COL4A4 (ENSRBIG00000030621)	RHBDD1 (ENSRBIG00000042928)	IRS1 (ENSRBIG00000030645)	NYAP2 (ENSRBIG00000031238)	LIN9 (ENSRBIG00000043619) #17	MIXL1 (ENSRBIG00000034282) #18	ENSRBIG00000038112	ACBD3 (ENSRBIG00000037536) #19	ENSRBIG00000012976 ##20	SDE2 (ENSRBIG00000042788) #21	ENSRBIG00000036291 #24	PYCR2 (ENSRBIG00000030213) #23	ENSRBIG00000043715 #24	TMEM63A (ENSRBIG00000042914) #25	EPHX1 (ENSRBIG00000033391) #26	SRP9 (ENSRBIG00000040480) #37	ENAH (ENSRBIG00000027849) #36	LBR (ENSRBIG00000043754) #35	ENSRBIG00000032234 #34
Hominoidea	DUPLICATION
Hominoidea	DUPLICATION
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000159380	ENSGT00910000147389	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000159380	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00910000147389	ENSGT00940000159380	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000003465.b.b.o.b
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00910000147389	ENSGT00940000159380	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000003465.b.b.o.b	ENSGT00390000002970.q
Pan	ANCESTRAL SPECIES		ENSGT00910000147389	ENSGT00940000159380	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000003465.b.b.o.b	ENSGT00390000002970.q
Bonobo	MODERN SPECIES		JMJD4 (ENSPPAG00000041921)	ENSPPAG00000042694	ENSPPAG00000042857	CDC42BPA (ENSPPAG00000030700) #11	COQ8A (ENSPPAG00000038783) #12	PSEN2 (ENSPPAG00000029453) #13	ITPKB (ENSPPAG00000034181) #14	ENSPPAG00000026314 #15	ENSPPAG00000035608	PARP1 (ENSPPAG00000040862) #16	LIN9 (ENSPPAG00000029947) #17	ENSPPAG00000013035 #18	ACBD3 (ENSPPAG00000034288) #19	ENSPPAG00000003422 #20	SDE2 (ENSPPAG00000037583) #21	LEFTY2 (ENSPPAG00000029951) #24	PYCR2 (ENSPPAG00000029624) #23	LEFTY1 (ENSPPAG00000031732) #24	TMEM63A (ENSPPAG00000035003) #25	EPHX1 (ENSPPAG00000037369) #26	SRP9 (ENSPPAG00000042680) #37	ENSPPAG00000027545 #36	LBR (ENSPPAG00000029928) #35	DNAH14 (ENSPPAG00000033548) #34	CNIH3 (ENSPPAG00000041930) #32	WDR26 (ENSPPAG00000030839) #31	CNIH4 (ENSPPAG00000037258) #30	NVL (ENSPPAG00000030596) #29	DEGS1 (ENSPPAG00000033472) #28	ENSPPAG00000005299	FBXO28 (ENSPPAG00000034613)
Chimpanzee	MODERN SPECIES		ENSPTRG00000048948	JMJD4 (ENSPTRG00000002059)	ZNF678 (ENSPTRG00000002057)	CDC42BPA (ENSPTRG00000042934) #11	COQ8A (ENSPTRG00000033741) #12	PSEN2 (ENSPTRG00000002052) #13	ITPKB (ENSPTRG00000002051) #14	STUM (ENSPTRG00000030135) #15	ENSPTRG00000043266	PARP1 (ENSPTRG00000002049) #16	LIN9 (ENSPTRG00000002048) #17	MIXL1 (ENSPTRG00000049290) #18	ACBD3 (ENSPTRG00000002046) #19	H3-3A (ENSPTRG00000002045) ##20	SDE2 (ENSPTRG00000002044) #21	LEFTY2 (ENSPTRG00000002043) #24	PYCR2 (ENSPTRG00000002042) #23	LEFTY1 (ENSPTRG00000049763) #24	TMEM63A (ENSPTRG00000002040) #25	EPHX1 (ENSPTRG00000002039) #26	SRP9 (ENSPTRG00000002038) #37	ENAH (ENSPTRG00000002037) #36	LBR (ENSPTRG00000002036) #35	DNAH14 (ENSPTRG00000050408) #34	CNIH3 (ENSPTRG00000002027) #32	WDR26 (ENSPTRG00000002026) #31	CNIH4 (ENSPTRG00000002025) #30	NVL (ENSPTRG00000046422) #29	DEGS1 (ENSPTRG00000002023) #28	ENSPTRG00000020477	FBXO28 (ENSPTRG00000002021)
Human	MODERN SPECIES		PRSS38 (ENSG00000185888)	JMJD4 (ENSG00000081692)	SNAP47 (ENSG00000143740)	ZNF678 (ENSG00000181450)	CDC42BPA (ENSG00000143776) #11	COQ8A (ENSG00000163050) #12	PSEN2 (ENSG00000143801) #13	ITPKB (ENSG00000143772) #14	STUM (ENSG00000203685) #15	PARP1 (ENSG00000143799) #16	LIN9 (ENSG00000183814) #17	MIXL1 (ENSG00000185155) #18	ACBD3 (ENSG00000182827) #19	H3-3A (ENSG00000163041) #20	SDE2 (ENSG00000143751) #21	LEFTY2 (ENSG00000143768) #24	PYCR2 (ENSG00000143811) #23	ENSG00000255835	LEFTY1 (ENSG00000243709) #24	TMEM63A (ENSG00000196187) #25	EPHX1 (ENSG00000143819) #26	SRP9 (ENSG00000143742) #37	ENAH (ENSG00000154380) #36	LBR (ENSG00000143815) #35	DNAH14 (ENSG00000185842) #34	CNIH3 (ENSG00000143786) #32	WDR26 (ENSG00000162923) #31	CNIH4 (ENSG00000143771) #30	NVL (ENSG00000143748) #29	DEGS1 (ENSG00000143753) #28	FBXO28 (ENSG00000143756)
Gorilla	MODERN SPECIES		ENSGGOG00000037683	JMJD4 (ENSGGOG00000008441)	ENSGGOG00000041432	ZNF678 (ENSGGOG00000042328)	CDC42BPA (ENSGGOG00000009605) #11	COQ8A (ENSGGOG00000009596) #12	PSEN2 (ENSGGOG00000003332) #13	ENSGGOG00000015112 #14	ENSGGOG00000015658 #15	PARP1 (ENSGGOG00000006308) #16	LIN9 (ENSGGOG00000002125) #17	MIXL1 (ENSGGOG00000002122) #18	ACBD3 (ENSGGOG00000001129) #19	ENSGGOG00000022526 ##20	SDE2 (ENSGGOG00000009850) #21	LEFTY2 (ENSGGOG00000000866) #24	PYCR2 (ENSGGOG00000014247) #23	LEFTY1 (ENSGGOG00000038788) #24	TMEM63A (ENSGGOG00000000862) #25	EPHX1 (ENSGGOG00000000859) #26	SRP9 (ENSGGOG00000011555) #37	ENSGGOG00000022660 #36	LBR (ENSGGOG00000015250) #35	ENSGGOG00000040109 #34	DNAH14 (ENSGGOG00000040408)	CNIH3 (ENSGGOG00000000242) #32	WDR26 (ENSGGOG00000008231) #31	CNIH4 (ENSGGOG00000005708) #30	ENSGGOG00000038475	NVL (ENSGGOG00000034871) #29	DEGS1 (ENSGGOG00000009270) #28
Orangutan	MODERN SPECIES		SNAP47 (ENSPPYG00000000153)	JMJD4 (ENSPPYG00000000154)	ENSPPYG00000000155	CDC42BPA (ENSPPYG00000000158) #11	COQ8A (ENSPPYG00000000159) #12	PSEN2 (ENSPPYG00000000160) #13	ITPKB (ENSPPYG00000000161) #14	STUM (ENSPPYG00000000162) #15	PARP1 (ENSPPYG00000000164) #16	ENSPPYG00000000165 #17	MIXL1 (ENSPPYG00000000166) #18	ACBD3 (ENSPPYG00000029541) #19	ENSPPYG00000032085	ENSPPYG00000000168 ##20	SDE2 (ENSPPYG00000000169) #21	LEFTY2 (ENSPPYG00000030151) #24	PYCR2 (ENSPPYG00000000171) #23	LEFTY1 (ENSPPYG00000033926) #24	TMEM63A (ENSPPYG00000029911) #25	EPHX1 (ENSPPYG00000039616) #26	ENSPPYG00000000173 #26	SRP9 (ENSPPYG00000000174) #37	ENSPPYG00000000175 #36	LBR (ENSPPYG00000000176) #35	DNAH14 (ENSPPYG00000039314) #34	CNIH3 (ENSPPYG00000000181) #32	ENSPPYG00000002704	WDR26 (ENSPPYG00000000182) #31	CNIH4 (ENSPPYG00000040381) #30	NVL (ENSPPYG00000000184) #29	DEGS1 (ENSPPYG00000010649) #28
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Hominidae	ANCESTRAL SPECIES	6	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000003465.b.b.o.b	ENSGT00390000002970.q	ENSGT00950000182960.a.a.a.a.b.rb.w.a
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000003465.b.b.o.b	ENSGT00390000002970.q	ENSGT00950000182960.a.a.a.a.b.rb.w.a	ENSGT00950000183070.a.b.g.b.b.a.a
Pan	ANCESTRAL SPECIES		ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000003465.b.b.o.b	ENSGT00390000002970.q	ENSGT00950000182960.a.a.a.a.b.rb.w.a	ENSGT00950000183070.a.b.g.b.b.a.a
Chimpanzee	MODERN SPECIES		ZNF678 (ENSPTRG00000002057)	CDC42BPA (ENSPTRG00000042934) #11	COQ8A (ENSPTRG00000033741) #12	PSEN2 (ENSPTRG00000002052) #13	ITPKB (ENSPTRG00000002051) #14	STUM (ENSPTRG00000030135) #15	ENSPTRG00000043266	PARP1 (ENSPTRG00000002049) #16	LIN9 (ENSPTRG00000002048) #17	MIXL1 (ENSPTRG00000049290) #18	ACBD3 (ENSPTRG00000002046) #19	H3-3A (ENSPTRG00000002045) ##20	SDE2 (ENSPTRG00000002044) #21	LEFTY2 (ENSPTRG00000002043) #24	PYCR2 (ENSPTRG00000002042) #23	LEFTY1 (ENSPTRG00000049763) #24	TMEM63A (ENSPTRG00000002040) #25	EPHX1 (ENSPTRG00000002039) #26	SRP9 (ENSPTRG00000002038) #37	ENAH (ENSPTRG00000002037) #36	LBR (ENSPTRG00000002036) #35	DNAH14 (ENSPTRG00000050408) #34	CNIH3 (ENSPTRG00000002027) #32	WDR26 (ENSPTRG00000002026) #31	CNIH4 (ENSPTRG00000002025) #30	NVL (ENSPTRG00000046422) #29	DEGS1 (ENSPTRG00000002023) #28	ENSPTRG00000020477	FBXO28 (ENSPTRG00000002021)	ENSPTRG00000051447	ENSPTRG00000050115
Bonobo	MODERN SPECIES		ENSPPAG00000042857	CDC42BPA (ENSPPAG00000030700) #11	COQ8A (ENSPPAG00000038783) #12	PSEN2 (ENSPPAG00000029453) #13	ITPKB (ENSPPAG00000034181) #14	ENSPPAG00000026314 #15	ENSPPAG00000035608	PARP1 (ENSPPAG00000040862) #16	LIN9 (ENSPPAG00000029947) #17	ENSPPAG00000013035 #18	ACBD3 (ENSPPAG00000034288) #19	ENSPPAG00000003422 #20	SDE2 (ENSPPAG00000037583) #21	LEFTY2 (ENSPPAG00000029951) #24	PYCR2 (ENSPPAG00000029624) #23	LEFTY1 (ENSPPAG00000031732) #24	TMEM63A (ENSPPAG00000035003) #25	EPHX1 (ENSPPAG00000037369) #26	SRP9 (ENSPPAG00000042680) #37	ENSPPAG00000027545 #36	LBR (ENSPPAG00000029928) #35	DNAH14 (ENSPPAG00000033548) #34	CNIH3 (ENSPPAG00000041930) #32	WDR26 (ENSPPAG00000030839) #31	CNIH4 (ENSPPAG00000037258) #30	NVL (ENSPPAG00000030596) #29	DEGS1 (ENSPPAG00000033472) #28	ENSPPAG00000005299	FBXO28 (ENSPPAG00000034613)	ENSPPAG00000029629	ENSPPAG00000028543
Human	MODERN SPECIES		ZNF678 (ENSG00000181450)	CDC42BPA (ENSG00000143776) #11	COQ8A (ENSG00000163050) #12	PSEN2 (ENSG00000143801) #13	ITPKB (ENSG00000143772) #14	STUM (ENSG00000203685) #15	PARP1 (ENSG00000143799) #16	LIN9 (ENSG00000183814) #17	MIXL1 (ENSG00000185155) #18	ACBD3 (ENSG00000182827) #19	H3-3A (ENSG00000163041) #20	SDE2 (ENSG00000143751) #21	LEFTY2 (ENSG00000143768) #24	PYCR2 (ENSG00000143811) #23	ENSG00000255835	LEFTY1 (ENSG00000243709) #24	TMEM63A (ENSG00000196187) #25	EPHX1 (ENSG00000143819) #26	SRP9 (ENSG00000143742) #37	ENAH (ENSG00000154380) #36	LBR (ENSG00000143815) #35	DNAH14 (ENSG00000185842) #34	CNIH3 (ENSG00000143786) #32	WDR26 (ENSG00000162923) #31	CNIH4 (ENSG00000143771) #30	NVL (ENSG00000143748) #29	DEGS1 (ENSG00000143753) #28	FBXO28 (ENSG00000143756)	TP53BP2 (ENSG00000143514)	CAPN2 (ENSG00000162909)	CAPN8 (ENSG00000203697)
Gorilla	MODERN SPECIES		ENSGGOG00000041432	ZNF678 (ENSGGOG00000042328)	CDC42BPA (ENSGGOG00000009605) #11	COQ8A (ENSGGOG00000009596) #12	PSEN2 (ENSGGOG00000003332) #13	ENSGGOG00000015112 #14	ENSGGOG00000015658 #15	PARP1 (ENSGGOG00000006308) #16	LIN9 (ENSGGOG00000002125) #17	MIXL1 (ENSGGOG00000002122) #18	ACBD3 (ENSGGOG00000001129) #19	ENSGGOG00000022526 ##20	SDE2 (ENSGGOG00000009850) #21	LEFTY2 (ENSGGOG00000000866) #24	PYCR2 (ENSGGOG00000014247) #23	LEFTY1 (ENSGGOG00000038788) #24	TMEM63A (ENSGGOG00000000862) #25	EPHX1 (ENSGGOG00000000859) #26	SRP9 (ENSGGOG00000011555) #37	ENSGGOG00000022660 #36	LBR (ENSGGOG00000015250) #35	ENSGGOG00000040109 #34	DNAH14 (ENSGGOG00000040408)	CNIH3 (ENSGGOG00000000242) #32	WDR26 (ENSGGOG00000008231) #31	CNIH4 (ENSGGOG00000005708) #30	ENSGGOG00000038475	NVL (ENSGGOG00000034871) #29	DEGS1 (ENSGGOG00000009270) #28	ENSGGOG00000027698	FBXO28 (ENSGGOG00000010974)
Orangutan	MODERN SPECIES		ENSPPYG00000000155	CDC42BPA (ENSPPYG00000000158) #11	COQ8A (ENSPPYG00000000159) #12	PSEN2 (ENSPPYG00000000160) #13	ITPKB (ENSPPYG00000000161) #14	STUM (ENSPPYG00000000162) #15	PARP1 (ENSPPYG00000000164) #16	ENSPPYG00000000165 #17	MIXL1 (ENSPPYG00000000166) #18	ACBD3 (ENSPPYG00000029541) #19	ENSPPYG00000032085	ENSPPYG00000000168 ##20	SDE2 (ENSPPYG00000000169) #21	LEFTY2 (ENSPPYG00000030151) #24	PYCR2 (ENSPPYG00000000171) #23	LEFTY1 (ENSPPYG00000033926) #24	TMEM63A (ENSPPYG00000029911) #25	EPHX1 (ENSPPYG00000039616) #26	ENSPPYG00000000173 #26	SRP9 (ENSPPYG00000000174) #37	ENSPPYG00000000175 #36	LBR (ENSPPYG00000000176) #35	DNAH14 (ENSPPYG00000039314) #34	CNIH3 (ENSPPYG00000000181) #32	ENSPPYG00000002704	WDR26 (ENSPPYG00000000182) #31	CNIH4 (ENSPPYG00000040381) #30	NVL (ENSPPYG00000000184) #29	DEGS1 (ENSPPYG00000010649) #28	FBXO28 (ENSPPYG00000000185)	TP53BP2 (ENSPPYG00000000186)
Gibbon	MODERN SPECIES	20	ZNF678 (ENSNLEG00000008917)	CDC42BPA (ENSNLEG00000013980) #11	COQ8A (ENSNLEG00000013937) #12	PSEN2 (ENSNLEG00000013924) #13	ITPKB (ENSNLEG00000013915) #14	ENSNLEG00000013913 #15	ENSNLEG00000032044	PARP1 (ENSNLEG00000013905) #16	LIN9 (ENSNLEG00000013837) #17	MIXL1 (ENSNLEG00000032618) #18	ACBD3 (ENSNLEG00000034130) #19	ENSNLEG00000013798 ##20	SDE2 (ENSNLEG00000013788) #21	ENSNLEG00000013769 #24	PYCR2 (ENSNLEG00000026763) #23	LEFTY1 (ENSNLEG00000036199) #24	TMEM63A (ENSNLEG00000013755) #25	EPHX1 (ENSNLEG00000013747) #26	SRP9 (ENSNLEG00000013740) #37	ENSNLEG00000013693 #36	LBR (ENSNLEG00000027476) #35	ENSNLEG00000013644	CNIH3 (ENSNLEG00000032625) #32	ENSNLEG00000033301	WDR26 (ENSNLEG00000013555) #31	ENSNLEG00000032458 #30	NVL (ENSNLEG00000013437) #29	DEGS1 (ENSNLEG00000013432) #28	FBXO28 (ENSNLEG00000013415)	TP53BP2 (ENSNLEG00000013377)	CAPN2 (ENSNLEG00000013341)
Hominoidea	ANCESTRAL SPECIES																	ENSGT00390000010056.r #24
Gibbon	MODERN SPECIES	20	JMJD4 (ENSNLEG00000032639)	ENSNLEG00000031801	ZNF678 (ENSNLEG00000008917)	CDC42BPA (ENSNLEG00000013980) #11	COQ8A (ENSNLEG00000013937) #12	PSEN2 (ENSNLEG00000013924) #13	ITPKB (ENSNLEG00000013915) #14	ENSNLEG00000013913 #15	ENSNLEG00000032044	PARP1 (ENSNLEG00000013905) #16	LIN9 (ENSNLEG00000013837) #17	MIXL1 (ENSNLEG00000032618) #18	ACBD3 (ENSNLEG00000034130) #19	ENSNLEG00000013798 ##20	SDE2 (ENSNLEG00000013788) #21	ENSNLEG00000013769 #24	PYCR2 (ENSNLEG00000026763) #23	LEFTY1 (ENSNLEG00000036199) #24	TMEM63A (ENSNLEG00000013755) #25	EPHX1 (ENSNLEG00000013747) #26	SRP9 (ENSNLEG00000013740) #37	ENSNLEG00000013693 #36	LBR (ENSNLEG00000027476) #35	ENSNLEG00000013644	CNIH3 (ENSNLEG00000032625) #32	ENSNLEG00000033301	WDR26 (ENSNLEG00000013555) #31	ENSNLEG00000032458 #30	NVL (ENSNLEG00000013437) #29	DEGS1 (ENSNLEG00000013432) #28	FBXO28 (ENSNLEG00000013415)
Tarsier	MODERN SPECIES	6081															PYCR2 (ENSTSYG00000032908) #23	ENSTSYG00000030725 #24	TMEM63A (ENSTSYG00000036713) #25	EPHX1 (ENSTSYG00000034653) #26	SRP9 (ENSTSYG00000026832) #37
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Lemuriformes	ANCESTRAL SPECIES	6	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b.i.a #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Lemuriformes_a	ANCESTRAL SPECIES	113	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	304	ENSPCOG00000025467	CNST (ENSPCOG00000014228) #7	SCCPDH (ENSPCOG00000019439) #8	AHCTF1 (ENSPCOG00000027036) #10	CDC42BPA (ENSPCOG00000027076) #11	COQ8A (ENSPCOG00000022285) #12	PSEN2 (ENSPCOG00000013955) #13	ITPKB (ENSPCOG00000028557) #14	STUM (ENSPCOG00000013568) #15	PARP1 (ENSPCOG00000016918) #16	LIN9 (ENSPCOG00000007823) #17	MIXL1 (ENSPCOG00000024192) #18	ACBD3 (ENSPCOG00000010358) #19	ENSPCOG00000026943 ##20	SDE2 (ENSPCOG00000015642) #21	ENSPCOG00000028060 #24	PYCR2 (ENSPCOG00000018908) #23	ENSPCOG00000020232 #24	TMEM63A (ENSPCOG00000012985) #25	EPHX1 (ENSPCOG00000013150) #26	SRP9 (ENSPCOG00000021743) #37
Coquerels sifaka	MODERN SPECIES	304	SCCPDH (ENSPCOG00000019439) #8	AHCTF1 (ENSPCOG00000027036) #10	CDC42BPA (ENSPCOG00000027076) #11	COQ8A (ENSPCOG00000022285) #12	PSEN2 (ENSPCOG00000013955) #13	ITPKB (ENSPCOG00000028557) #14	STUM (ENSPCOG00000013568) #15	PARP1 (ENSPCOG00000016918) #16	LIN9 (ENSPCOG00000007823) #17	MIXL1 (ENSPCOG00000024192) #18	ACBD3 (ENSPCOG00000010358) #19	ENSPCOG00000026943 ##20	SDE2 (ENSPCOG00000015642) #21	ENSPCOG00000028060 #24	PYCR2 (ENSPCOG00000018908) #23	ENSPCOG00000020232 #24	TMEM63A (ENSPCOG00000012985) #25	EPHX1 (ENSPCOG00000013150) #26	SRP9 (ENSPCOG00000021743) #37
Mouse lemur	MODERN SPECIES	8	CNST (ENSMICG00000036496) #7	SCCPDH (ENSMICG00000014588) #8	ENSMICG00000034974	AHCTF1 (ENSMICG00000014617) #10	CDC42BPA (ENSMICG00000013466) #11	COQ8A (ENSMICG00000013440) #12	PSEN2 (ENSMICG00000013427) #13	ITPKB (ENSMICG00000038100) #14	STUM (ENSMICG00000042487) #15	PARP1 (ENSMICG00000017076) #16	LIN9 (ENSMICG00000017073) #17	MIXL1 (ENSMICG00000046165) #18	ACBD3 (ENSMICG00000035503) #19	H3-3A (ENSMICG00000044151) #20	SDE2 (ENSMICG00000004083) #21	ENSMICG00000041934 #24	PYCR2 (ENSMICG00000017416) #23	ENSMICG00000027213	TMEM63A (ENSMICG00000004058) #25	EPHX1 (ENSMICG00000034513) #26	ENSMICG00000030104 #37	ENSMICG00000009785	ENAH (ENSMICG00000010930) #36	LBR (ENSMICG00000010070) #35	ENSMICG00000031047	DNAH14 (ENSMICG00000037251) #34	CNIH3 (ENSMICG00000031871) #32	WDR26 (ENSMICG00000006896) #31	ENSMICG00000030956	CNIH4 (ENSMICG00000032337) #30	NVL (ENSMICG00000006602) #29
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	160	NUP133 (ENSOGAG00000006736)	ACTA1 (ENSOGAG00000016005)	ENSOGAG00000008357	RAB4A (ENSOGAG00000008356)	RHOU (ENSOGAG00000002345)	ENSOGAG00000027093	ENSOGAG00000026713 #15	ENSOGAG00000032900	PARP1 (ENSOGAG00000016206) #16	ENSOGAG00000007352 #17	MIXL1 (ENSOGAG00000027252) #18	ACBD3 (ENSOGAG00000004334) #19	ENSOGAG00000024312 ##20	SDE2 (ENSOGAG00000002069) #21	ENSOGAG00000033158	ENSOGAG00000002817 #24	VOPP1 (ENSOGAG00000008223)	LANCL2 (ENSOGAG00000009098)	EGFR (ENSOGAG00000009092)	ENSOGAG00000031014	SEC61G (ENSOGAG00000010262)	VSTM2A (ENSOGAG00000005539)
Bushbaby	MODERN SPECIES	160	ENSOGAG00000026713 #15	ENSOGAG00000027093	RHOU (ENSOGAG00000002345)	RAB4A (ENSOGAG00000008356)	ENSOGAG00000008357	ACTA1 (ENSOGAG00000016005)	NUP133 (ENSOGAG00000006736)	ENSOGAG00000006746	ENSOGAG00000003024	URB2 (ENSOGAG00000003021)	GALNT2 (ENSOGAG00000026642)	PGBD5 (ENSOGAG00000010600)	COG2 (ENSOGAG00000011283)	AGT (ENSOGAG00000011286)	PYCR2 (ENSOGAG00000024897) #23	ENSOGAG00000033220 #24	TMEM63A (ENSOGAG00000010346) #25	EPHX1 (ENSOGAG00000010341) #26	ENSOGAG00000001752 #37	ENAH (ENSOGAG00000031134) #36	LBR (ENSOGAG00000013724) #35	DNAH14 (ENSOGAG00000028956) #34	CNIH3 (ENSOGAG00000003349) #32	ENSOGAG00000029941	WDR26 (ENSOGAG00000015427) #31	CNIH4 (ENSOGAG00000008894) #30	NVL (ENSOGAG00000003955) #29	DEGS1 (ENSOGAG00000010827) #28	FBXO28 (ENSOGAG00000032645)	TP53BP2 (ENSOGAG00000012552)	CAPN2 (ENSOGAG00000012548)
Laurasiatheria	ANCESTRAL SPECIES	28	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Artiodactyla	ANCESTRAL SPECIES	25	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Suina	ANCESTRAL SPECIES	55	ENSGT00390000004799.j #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a.b #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28
Pig	DUPLICATION
Pig	MODERN SPECIES	1	SCCPDH (ENSSSCG00000010866) #8	ENSSSCG00000060854	AHCTF1 (ENSSSCG00000010863) #10	CDC42BPA (ENSSSCG00000010862) #11	COQ8A (ENSSSCG00000010861) #12	PSEN2 (ENSSSCG00000010860) #13	ENSSSCG00000040100 #14	ENSSSCG00000046588 #14	STUM (ENSSSCG00000024288) #15	PARP1 (ENSSSCG00000023660) #16	LIN9 (ENSSSCG00000021310) #17	MIXL1 (ENSSSCG00000030675) #18	ACBD3 (ENSSSCG00000024180) #19	H3-3A (ENSSSCG00000023971) ##20	SDE2 (ENSSSCG00000010858) #21	LEFTY2 (ENSSSCG00000032299) #24	PYCR2 (ENSSSCG00000010855) #23	ENSSSCG00000038188 #24	TMEM63A (ENSSSCG00000010854) #25	EPHX1 (ENSSSCG00000010853) #26	SRP9 (ENSSSCG00000031664) #37	ENSSSCG00000017768	ENAH (ENSSSCG00000038646) #36	LBR (ENSSSCG00000032397) #35	DNAH14 (ENSSSCG00000031483) #34	CNIH3 (ENSSSCG00000034972) #32	WDR26 (ENSSSCG00000010849) #31	CNIH4 (ENSSSCG00000035034) #30	NVL (ENSSSCG00000026705) #29	DEGS1 (ENSSSCG00000024484) #28	ZNF596 (ENSSSCG00000025290)
Pig	MODERN SPECIES	1	AHCTF1 (ENSSSCG00000010863) #10	CDC42BPA (ENSSSCG00000010862) #11	COQ8A (ENSSSCG00000010861) #12	PSEN2 (ENSSSCG00000010860) #13	ENSSSCG00000040100 #14	ENSSSCG00000046588 #14	STUM (ENSSSCG00000024288) #15	PARP1 (ENSSSCG00000023660) #16	LIN9 (ENSSSCG00000021310) #17	MIXL1 (ENSSSCG00000030675) #18	ACBD3 (ENSSSCG00000024180) #19	H3-3A (ENSSSCG00000023971) ##20	SDE2 (ENSSSCG00000010858) #21	LEFTY2 (ENSSSCG00000032299) #24	PYCR2 (ENSSSCG00000010855) #23	ENSSSCG00000038188 #24	TMEM63A (ENSSSCG00000010854) #25	EPHX1 (ENSSSCG00000010853) #26	SRP9 (ENSSSCG00000031664) #37	ENSSSCG00000017768	ENAH (ENSSSCG00000038646) #36	LBR (ENSSSCG00000032397) #35	DNAH14 (ENSSSCG00000031483) #34	CNIH3 (ENSSSCG00000034972) #32	WDR26 (ENSSSCG00000010849) #31	CNIH4 (ENSSSCG00000035034) #30	NVL (ENSSSCG00000026705) #29	DEGS1 (ENSSSCG00000024484) #28	ZNF596 (ENSSSCG00000025290)	KMO (ENSSSCG00000025686)	FH (ENSSSCG00000028178)
Chacoan peccary	MODERN SPECIES	50														H3-3A (ENSCWAG00000007368) #20	SDE2 (ENSCWAG00000007407) #21	ENSCWAG00000007440 #24	PYCR2 (ENSCWAG00000007472) #23	TMEM63A (ENSCWAG00000007524) #25	EPHX1 (ENSCWAG00000007633) #26	SRP9 (ENSCWAG00000007657) #37	ENAH (ENSCWAG00000007692) #36	LBR (ENSCWAG00000007748) #35	ENSCWAG00000007806 #34	ENSCWAG00000007839 #34	ENSCWAG00000007925	ENSCWAG00000008140 ##32	WDR26 (ENSCWAG00000008179) #31	CNIH4 (ENSCWAG00000008250) #30	NVL (ENSCWAG00000008427) #29	DEGS1 (ENSCWAG00000008714) #28	F13B (ENSCWAG00000008757)
Artiodactyla_a	ANCESTRAL SPECIES	26	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Artiodactyla_b	ANCESTRAL SPECIES	26	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Cetacea	ANCESTRAL SPECIES	23	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376.tb.a #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Odontoceti	ANCESTRAL SPECIES	24	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376.tb.a #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Odontoceti_a	ANCESTRAL SPECIES	27	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376.tb.a #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056 #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013102.e.a.c.b	ENSGT00390000018505.b #37	ENSGT00940000157376.tb.a #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Monodontidae	ANCESTRAL SPECIES		ENSGT00390000018900 #10	ENSGT00390000014577.a.b	ENSGT00530000063929.a.a.e.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056 #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013102.e.a.c.b	ENSGT00390000018505.b #37	ENSGT00940000157376.tb.a #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	304	SCCPDH (ENSMMNG00015001432) #8	ENSMMNG00015001366 #9	AHCTF1 (ENSMMNG00015001241) #10	ENSMMNG00015001190	CDC42BPA (ENSMMNG00015000504) #11	COQ8A (ENSMMNG00015000182) #12	PSEN2 (ENSMMNG00015000131) #13	ITPKB (ENSMMNG00015000098) #14	STUM (ENSMMNG00015008698) #15	PARP1 (ENSMMNG00015008660) #16	LIN9 (ENSMMNG00015008632) #17	MIXL1 (ENSMMNG00015008612) #18	ACBD3 (ENSMMNG00015008597) #19	ENSMMNG00015008586 ##20	SDE2 (ENSMMNG00015008574) #21	ENSMMNG00015008553 #24	PYCR2 (ENSMMNG00015008531) #23	ENSMMNG00015008515 #24	TMEM63A (ENSMMNG00015008488) #25	EPHX1 (ENSMMNG00015008464) #26	SRP9 (ENSMMNG00015008443) #37	ENSMMNG00015008420 #36	LBR (ENSMMNG00015008386) #35	CNIH3 (ENSMMNG00015008371) #32	WDR26 (ENSMMNG00015008361) #31	CNIH4 (ENSMMNG00015008342) #30	NVL (ENSMMNG00015008286) #29	DEGS1 (ENSMMNG00015008254) #28	ENSMMNG00015008235	TP53BP2 (ENSMMNG00015008201)	CAPN2 (ENSMMNG00015008136)
Narwhal	MODERN SPECIES	304	AHCTF1 (ENSMMNG00015001241) #10	ENSMMNG00015001190	CDC42BPA (ENSMMNG00015000504) #11	COQ8A (ENSMMNG00015000182) #12	PSEN2 (ENSMMNG00015000131) #13	ITPKB (ENSMMNG00015000098) #14	STUM (ENSMMNG00015008698) #15	PARP1 (ENSMMNG00015008660) #16	LIN9 (ENSMMNG00015008632) #17	MIXL1 (ENSMMNG00015008612) #18	ACBD3 (ENSMMNG00015008597) #19	ENSMMNG00015008586 ##20	SDE2 (ENSMMNG00015008574) #21	ENSMMNG00015008553 #24	PYCR2 (ENSMMNG00015008531) #23	ENSMMNG00015008515 #24	TMEM63A (ENSMMNG00015008488) #25	EPHX1 (ENSMMNG00015008464) #26	SRP9 (ENSMMNG00015008443) #37	ENSMMNG00015008420 #36	LBR (ENSMMNG00015008386) #35	CNIH3 (ENSMMNG00015008371) #32	WDR26 (ENSMMNG00015008361) #31	CNIH4 (ENSMMNG00015008342) #30	NVL (ENSMMNG00015008286) #29	DEGS1 (ENSMMNG00015008254) #28	ENSMMNG00015008235	TP53BP2 (ENSMMNG00015008201)	CAPN2 (ENSMMNG00015008136)	ENSMMNG00015008104	ENSMMNG00015008084
Beluga whale	MODERN SPECIES	21	AHCTF1 (ENSDLEG00000011885) #10	ENSDLEG00000011853	ENSDLEG00000011842	CDC42BPA (ENSDLEG00000003384) #11	COQ8A (ENSDLEG00000001874) #12	PSEN2 (ENSDLEG00000001858) #13	ITPKB (ENSDLEG00000001845) #14	STUM (ENSDLEG00000001836) #15	PARP1 (ENSDLEG00000001796) #16	LIN9 (ENSDLEG00000001768) #17	MIXL1 (ENSDLEG00000001757) #18	ACBD3 (ENSDLEG00000001749) #19	H3-3A (ENSDLEG00000001740) #20	SDE2 (ENSDLEG00000001732) #21	PYCR2 (ENSDLEG00000001719) #23	ENSDLEG00000001704 #24	TMEM63A (ENSDLEG00000001668) #25	EPHX1 (ENSDLEG00000001643) #26	ENSDLEG00000001631	SRP9 (ENSDLEG00000001626) #37	ENSDLEG00000000835 #36	LBR (ENSDLEG00000000619) #35	ENSDLEG00000000602	CNIH3 (ENSDLEG00000000564) #32	WDR26 (ENSDLEG00000000539) #31	CNIH4 (ENSDLEG00000000514) #30	NVL (ENSDLEG00000000461) #29	DEGS1 (ENSDLEG00000000439) #28	FBXO28 (ENSDLEG00000000426)	TP53BP2 (ENSDLEG00000000370)	CAPN2 (ENSDLEG00000000249)
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES		SCCPDH (ENSPSNG00000002932) #8	ENSPSNG00000002969	AHCTF1 (ENSPSNG00000003012) #10	CDC42BPA (ENSPSNG00000003179) #11	ENSPSNG00000003290	COQ8A (ENSPSNG00000003309) #12	PSEN2 (ENSPSNG00000003404) #13	ITPKB (ENSPSNG00000003506) #14	STUM (ENSPSNG00000003602) #15	PARP1 (ENSPSNG00000003624) #16	LIN9 (ENSPSNG00000003691) #17	MIXL1 (ENSPSNG00000003754) #18	ACBD3 (ENSPSNG00000003774) #19	H3-3A (ENSPSNG00000003793) #20	SDE2 (ENSPSNG00000003818) #21	ENSPSNG00000003838 #24	PYCR2 (ENSPSNG00000003860) #23	ENSPSNG00000003871 #24	TMEM63A (ENSPSNG00000000052) #25	EPHX1 (ENSPSNG00000000088) #26	ENSPSNG00000000117	ENSPSNG00000000145 #37	ENSPSNG00000000246 #36	LBR (ENSPSNG00000000326) #35	CNIH3 (ENSPSNG00000000369) #32	WDR26 (ENSPSNG00000000396) #31	CNIH4 (ENSPSNG00000000427) #30	NVL (ENSPSNG00000000479) #29	DEGS1 (ENSPSNG00000000518) #28	FBXO28 (ENSPSNG00000000541)	TP53BP2 (ENSPSNG00000000569)
Vaquita	MODERN SPECIES		AHCTF1 (ENSPSNG00000003012) #10	CDC42BPA (ENSPSNG00000003179) #11	ENSPSNG00000003290	COQ8A (ENSPSNG00000003309) #12	PSEN2 (ENSPSNG00000003404) #13	ITPKB (ENSPSNG00000003506) #14	STUM (ENSPSNG00000003602) #15	PARP1 (ENSPSNG00000003624) #16	LIN9 (ENSPSNG00000003691) #17	MIXL1 (ENSPSNG00000003754) #18	ACBD3 (ENSPSNG00000003774) #19	H3-3A (ENSPSNG00000003793) #20	SDE2 (ENSPSNG00000003818) #21	ENSPSNG00000003838 #24	PYCR2 (ENSPSNG00000003860) #23	ENSPSNG00000003871 #24	TMEM63A (ENSPSNG00000000052) #25	EPHX1 (ENSPSNG00000000088) #26	ENSPSNG00000000117	ENSPSNG00000000145 #37	ENSPSNG00000000246 #36	LBR (ENSPSNG00000000326) #35	CNIH3 (ENSPSNG00000000369) #32	WDR26 (ENSPSNG00000000396) #31	CNIH4 (ENSPSNG00000000427) #30	NVL (ENSPSNG00000000479) #29	DEGS1 (ENSPSNG00000000518) #28	FBXO28 (ENSPSNG00000000541)	TP53BP2 (ENSPSNG00000000569)	CAPN2 (ENSPSNG00000000652)	ENSPSNG00000000722
Dolphin	DUPLICATION
Dolphin	MODERN SPECIES	6575																ENSTTRG00000014474 #24
Dolphin	MODERN SPECIES	789														ENSTTRG00000012389	SDE2 (ENSTTRG00000012379) #21	ENSTTRG00000012370 #24	PYCR2 (ENSTTRG00000012363) #23
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	15	ENSPCTG00005002183	ENSPCTG00005002174	ENSPCTG00005002163	SCCPDH (ENSPCTG00005002144) #8	AHCTF1 (ENSPCTG00005001979) #10	CDC42BPA (ENSPCTG00005001336) #11	PSEN2 (ENSPCTG00005001191) #13	ITPKB (ENSPCTG00005001181) #14	STUM (ENSPCTG00005001169) #15	PARP1 (ENSPCTG00005001077) #16	LIN9 (ENSPCTG00005000990) #17	MIXL1 (ENSPCTG00005000953) #18	ACBD3 (ENSPCTG00005000938) #19	ENSPCTG00005000927 ##20	SDE2 (ENSPCTG00005000908) #21	ENSPCTG00005000889 #24	PYCR2 (ENSPCTG00005000862) #23	ENSPCTG00005000846 #24	TMEM63A (ENSPCTG00005000810) #25	EPHX1 (ENSPCTG00005000792) #26	SRP9 (ENSPCTG00005000768) #37	ENAH (ENSPCTG00005000731) #36	LBR (ENSPCTG00005000679) #35	CNIH3 (ENSPCTG00005000645) #32	WDR26 (ENSPCTG00005000611) #31	CNIH4 (ENSPCTG00005000590) #30	ENSPCTG00005000568	NVL (ENSPCTG00005000438) #29	DEGS1 (ENSPCTG00005000386) #28	FBXO28 (ENSPCTG00005000364)	TP53BP2 (ENSPCTG00005000322)
Sperm whale	MODERN SPECIES	15	ENSPCTG00005002163	SCCPDH (ENSPCTG00005002144) #8	AHCTF1 (ENSPCTG00005001979) #10	CDC42BPA (ENSPCTG00005001336) #11	PSEN2 (ENSPCTG00005001191) #13	ITPKB (ENSPCTG00005001181) #14	STUM (ENSPCTG00005001169) #15	PARP1 (ENSPCTG00005001077) #16	LIN9 (ENSPCTG00005000990) #17	MIXL1 (ENSPCTG00005000953) #18	ACBD3 (ENSPCTG00005000938) #19	ENSPCTG00005000927 ##20	SDE2 (ENSPCTG00005000908) #21	ENSPCTG00005000889 #24	PYCR2 (ENSPCTG00005000862) #23	ENSPCTG00005000846 #24	TMEM63A (ENSPCTG00005000810) #25	EPHX1 (ENSPCTG00005000792) #26	SRP9 (ENSPCTG00005000768) #37	ENAH (ENSPCTG00005000731) #36	LBR (ENSPCTG00005000679) #35	CNIH3 (ENSPCTG00005000645) #32	WDR26 (ENSPCTG00005000611) #31	CNIH4 (ENSPCTG00005000590) #30	ENSPCTG00005000568	NVL (ENSPCTG00005000438) #29	DEGS1 (ENSPCTG00005000386) #28	FBXO28 (ENSPCTG00005000364)	TP53BP2 (ENSPCTG00005000322)	CAPN2 (ENSPCTG00005000250)	ENSPCTG00005000213
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES		SCCPDH (ENSBMSG00010000887) #8	ENSBMSG00010000922 #9	AHCTF1 (ENSBMSG00010000995) #10	ENSBMSG00010001133	CDC42BPA (ENSBMSG00010001349) #11	COQ8A (ENSBMSG00010002111) #12	PSEN2 (ENSBMSG00010002147) #13	ITPKB (ENSBMSG00010002191) #14	STUM (ENSBMSG00010002214) #15	PARP1 (ENSBMSG00010002247) #16	LIN9 (ENSBMSG00010002409) #17	MIXL1 (ENSBMSG00010002500) #18	ACBD3 (ENSBMSG00010002517) #19	ENSBMSG00010002563 #20	SDE2 (ENSBMSG00010002582) #21	ENSBMSG00010002616 #24	PYCR2 (ENSBMSG00010002659) #23	ENSBMSG00010002682 #24	TMEM63A (ENSBMSG00010002709) #25	EPHX1 (ENSBMSG00010002828) #26	ENSBMSG00010002850	ENSBMSG00010002862 #37	ENSBMSG00010002887 #36	LBR (ENSBMSG00010002944) #35	ENSBMSG00010002963 #34	ENSBMSG00010002972	ENSBMSG00010002975	CNIH3 (ENSBMSG00010003002) #32	WDR26 (ENSBMSG00010003042) #31	CNIH4 (ENSBMSG00010003094) #30	NVL (ENSBMSG00010003127) #29
Blue whale	MODERN SPECIES		AHCTF1 (ENSBMSG00010000995) #10	ENSBMSG00010001133	CDC42BPA (ENSBMSG00010001349) #11	COQ8A (ENSBMSG00010002111) #12	PSEN2 (ENSBMSG00010002147) #13	ITPKB (ENSBMSG00010002191) #14	STUM (ENSBMSG00010002214) #15	PARP1 (ENSBMSG00010002247) #16	LIN9 (ENSBMSG00010002409) #17	MIXL1 (ENSBMSG00010002500) #18	ACBD3 (ENSBMSG00010002517) #19	ENSBMSG00010002563 #20	SDE2 (ENSBMSG00010002582) #21	ENSBMSG00010002616 #24	PYCR2 (ENSBMSG00010002659) #23	ENSBMSG00010002682 #24	TMEM63A (ENSBMSG00010002709) #25	EPHX1 (ENSBMSG00010002828) #26	ENSBMSG00010002850	ENSBMSG00010002862 #37	ENSBMSG00010002887 #36	LBR (ENSBMSG00010002944) #35	ENSBMSG00010002963 #34	ENSBMSG00010002972	ENSBMSG00010002975	CNIH3 (ENSBMSG00010003002) #32	WDR26 (ENSBMSG00010003042) #31	CNIH4 (ENSBMSG00010003094) #30	NVL (ENSBMSG00010003127) #29	DEGS1 (ENSBMSG00010003230) #28	ENSBMSG00010003239
Pecora	ANCESTRAL SPECIES	22	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Percora_a	ANCESTRAL SPECIES	15	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Bovidae	DUPLICATION
Bovidae	ANCESTRAL SPECIES	15	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Caprinae	ANCESTRAL SPECIES	12	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090	ENSGT00740000115684
Goat	MODERN SPECIES	7	CDC42BPA (ENSCHIG00000021878) #11	COQ8A (ENSCHIG00000012633) #12	PSEN2 (ENSCHIG00000025180) #13	ITPKB (ENSCHIG00000016348) #14	STUM (ENSCHIG00000026813) #15	PARP1 (ENSCHIG00000018072) #16	LIN9 (ENSCHIG00000003005) #17	MIXL1 (ENSCHIG00000017640) #18	ACBD3 (ENSCHIG00000010539) #19	ENSCHIG00000021907 ##20	ENSCHIG00000013022	SDE2 (ENSCHIG00000022358) #21	ENSCHIG00000016605	ENSCHIG00000010623 #24	PYCR2 (ENSCHIG00000022032) #23	ENSCHIG00000017375 #24	TMEM63A (ENSCHIG00000026549) #25	EPHX1 (ENSCHIG00000017919) #26	SRP9 (ENSCHIG00000006407) #37	ENSCHIG00000004057	ENSCHIG00000000542	ENAH (ENSCHIG00000022407) #36	LBR (ENSCHIG00000013607) #35	DNAH14 (ENSCHIG00000021801) #34	CNIH3 (ENSCHIG00000015311) #32	ENSCHIG00000008380	WDR26 (ENSCHIG00000020527) #31	CNIH4 (ENSCHIG00000014392) #30	NVL (ENSCHIG00000001224) #29	DEGS1 (ENSCHIG00000021163) #28	ENSCHIG00000014707
Rambouillet Sheep	MODERN SPECIES	3	ENSOARG00020003724 #9	AHCTF1 (ENSOARG00020003268) #10	CDC42BPA (ENSOARG00020019926) #11	COQ8A (ENSOARG00020019681) #12	PSEN2 (ENSOARG00020019535) #13	ITPKB (ENSOARG00020019465) #14	STUM (ENSOARG00020019418) #15	PARP1 (ENSOARG00020019277) #16	LIN9 (ENSOARG00020018902) #17	MIXL1 (ENSOARG00020018842) #18	ACBD3 (ENSOARG00020018756) #19	H3F3A (ENSOARG00020018672) ##20	SDE2 (ENSOARG00020018625) #21	ENSOARG00020018575 #24	PYCR2 (ENSOARG00020018457) #23	ENSOARG00020018411 #24	TMEM63A (ENSOARG00020018308) #25	EPHX1 (ENSOARG00020018225) #26	SRP9 (ENSOARG00020018121) #37	ENSOARG00020018102	ENSOARG00020018058 #36	ENAH (ENSOARG00020017437) #36	LBR (ENSOARG00020017338) #35	ENSOARG00020017311	DNAH14 (ENSOARG00020016617) #34	CNIH3 (ENSOARG00020016440) #32	ENSOARG00020016393	WDR26 (ENSOARG00020016098) #31	CNIH4 (ENSOARG00020015970) #30	NVL (ENSOARG00020015361) #29	DEGS1 (ENSOARG00020015261) #28
Bovinae	ANCESTRAL SPECIES	12	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Bos	ANCESTRAL SPECIES	12	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Bos_b	ANCESTRAL SPECIES	9	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Cow	MODERN SPECIES	7	CDC42BPA (ENSBTAG00000022777) #11	COQ8A (ENSBTAG00000021880) #12	PSEN2 (ENSBTAG00000013197) #13	ITPKB (ENSBTAG00000053007) #14	ENSBTAG00000033252	STUM (ENSBTAG00000024560) #15	ENSBTAG00000047233	PARP1 (ENSBTAG00000000837) #16	LIN9 (ENSBTAG00000033267) #17	MIXL1 (ENSBTAG00000002139) #18	ACBD3 (ENSBTAG00000013128) #19	H3-3A (ENSBTAG00000024561) ##20	SDE2 (ENSBTAG00000012787) #21	ENSBTAG00000054752 #24	PYCR2 (ENSBTAG00000005835) #23	LEFTY2 (ENSBTAG00000055022) #24	TMEM63A (ENSBTAG00000002854) #25	EPHX1 (ENSBTAG00000000140) #26	SRP9 (ENSBTAG00000033322) #37	ENAH (ENSBTAG00000016185) #36	LBR (ENSBTAG00000008453) #35	DNAH14 (ENSBTAG00000008449) #34	CNIH3 (ENSBTAG00000053199) #32	WDR26 (ENSBTAG00000011785) #31	CNIH4 (ENSBTAG00000019471) #30	NVL (ENSBTAG00000006718) #29	DEGS1 (ENSBTAG00000012705) #28	FBXO28 (ENSBTAG00000019538)	TP53BP2 (ENSBTAG00000012781)	CAPN2 (ENSBTAG00000012778)	CAPN8 (ENSBTAG00000003600)
Hybrid Bos Indicus	MODERN SPECIES	7	COQ8A (ENSBIXG00005027082) #12	PSEN2 (ENSBIXG00005004681) #13	ITPKB (ENSBIXG00005027239) #14	ENSBIXG00005027257	ENSBIXG00005027292 #15	ENSBIXG00005007774	PARP1 (ENSBIXG00005027371) #16	LIN9 (ENSBIXG00005027424) #17	MIXL1 (ENSBIXG00005027457) #18	ENSBIXG00005027464	ACBD3 (ENSBIXG00005027541) #19	ENSBIXG00005027583 ##20	SDE2 (ENSBIXG00005027604) #21	ENSBIXG00005027638 #24	PYCR2 (ENSBIXG00005004750) #23	ENSBIXG00005004759 #24	TMEM63A (ENSBIXG00005027791) #25	EPHX1 (ENSBIXG00005027913) #26	SRP9 (ENSBIXG00005027974) #37	ENAH (ENSBIXG00005028092) #36	LBR (ENSBIXG00005028146) #35	DNAH14 (ENSBIXG00005004917) #34	CNIH3 (ENSBIXG00005028617) #32	WDR26 (ENSBIXG00005002380) #31	CNIH4 (ENSBIXG00005002358) #30	DEGS1 (ENSBIXG00005028737) #28	NVL (ENSBIXG00005028887) #29	FBXO28 (ENSBIXG00005028929)	TP53BP2 (ENSBIXG00005002081)	CAPN2 (ENSBIXG00005029036)	CAPN8 (ENSBIXG00005005137)
Bos_a	ANCESTRAL SPECIES	8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Domestic yak	MODERN SPECIES	5	COQ8A (ENSBGRG00000005906) #12	PSEN2 (ENSBGRG00000005715) #13	ITPKB (ENSBGRG00000005683) #14	ENSBGRG00000005664 #15	PARP1 (ENSBGRG00000005223) #16	LIN9 (ENSBGRG00000005002) #17	MIXL1 (ENSBGRG00000004952) #18	ENSBGRG00000004942	ACBD3 (ENSBGRG00000004916) #19	ENSBGRG00000004896	H3-3A (ENSBGRG00000004866) #20	ENSBGRG00000004846	SDE2 (ENSBGRG00000004760) #21	ENSBGRG00000004709 #24	PYCR2 (ENSBGRG00000004674) #23	ENSBGRG00000004607 #24	TMEM63A (ENSBGRG00000004465) #25	EPHX1 (ENSBGRG00000004302) #26	SRP9 (ENSBGRG00000004171) #37	ENAH (ENSBGRG00000003960) #36	LBR (ENSBGRG00000003827) #35	ENSBGRG00000003785 #34	ENSBGRG00000003740 #34	ENSBGRG00000003672	CNIH3 (ENSBGRG00000011424) #32	WDR26 (ENSBGRG00000011013) #31	CNIH4 (ENSBGRG00000010701) #30	NVL (ENSBGRG00000010007) #29	DEGS1 (ENSBGRG00000009888) #28	FBXO28 (ENSBGRG00000009777)	TP53BP2 (ENSBGRG00000009682)
Wild yak	MODERN SPECIES	1552																ENSBMUG00000006287 #24	TMEM63A (ENSBMUG00000006305) #25	EPHX1 (ENSBMUG00000006359) #26	SRP9 (ENSBMUG00000006383) #37	ENAH (ENSBMUG00000006434) #36	LBR (ENSBMUG00000006450) #35	DNAH14 (ENSBMUG00000006523) #34	CNIH3 (ENSBMUG00000006554) #32	WDR26 (ENSBMUG00000006567) #31	CNIH4 (ENSBMUG00000006608) #30	NVL (ENSBMUG00000006678) #29	DEGS1 (ENSBMUG00000006787) #28	ENSBMUG00000006795	TP53BP2 (ENSBMUG00000006820)	CAPN2 (ENSBMUG00000006868)	CAPN8 (ENSBMUG00000006928)
American bison	MODERN SPECIES	3231	AHCTF1 (ENSBBBG00000011807) #10	CDC42BPA (ENSBBBG00000012129) #11	COQ8A (ENSBBBG00000012196) #12	PSEN2 (ENSBBBG00000012223) #13	ITPKB (ENSBBBG00000012230) #14	STUM (ENSBBBG00000012244) #15	ENSBBBG00000012249	PARP1 (ENSBBBG00000012265) #16	LIN9 (ENSBBBG00000002326) #17	ENSBBBG00000001928	ACBD3 (ENSBBBG00000012298) #19	ENSBBBG00000012307 #20	SDE2 (ENSBBBG00000012313) #21	ENSBBBG00000012320 #24	PYCR2 (ENSBBBG00000012333) #23	ENSBBBG00000012339 #24	TMEM63A (ENSBBBG00000012352) #25	EPHX1 (ENSBBBG00000002344) #26	SRP9 (ENSBBBG00000002346) #37	ENAH (ENSBBBG00000002368) #36	LBR (ENSBBBG00000012450) #35	DNAH14 (ENSBBBG00000007448) #34	CNIH3 (ENSBBBG00000002423) #32	ENSBBBG00000012622	WDR26 (ENSBBBG00000012642) #31	CNIH4 (ENSBBBG00000012671) #30	NVL (ENSBBBG00000002471) #29	DEGS1 (ENSBBBG00000012791) #28	FBXO28 (ENSBBBG00000012804)	TP53BP2 (ENSBBBG00000001782)	CAPN2 (ENSBBBG00000007450)
Bovidae	ANCESTRAL SPECIES	15	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970
Caprinae	ANCESTRAL SPECIES	12	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Goat	MODERN SPECIES	7	AHCTF1 (ENSCHIG00000023392) #10	ENSCHIG00000010278	CDC42BPA (ENSCHIG00000021878) #11	COQ8A (ENSCHIG00000012633) #12	PSEN2 (ENSCHIG00000025180) #13	ITPKB (ENSCHIG00000016348) #14	STUM (ENSCHIG00000026813) #15	PARP1 (ENSCHIG00000018072) #16	LIN9 (ENSCHIG00000003005) #17	MIXL1 (ENSCHIG00000017640) #18	ACBD3 (ENSCHIG00000010539) #19	ENSCHIG00000021907 ##20	ENSCHIG00000013022	SDE2 (ENSCHIG00000022358) #21	ENSCHIG00000016605	ENSCHIG00000010623 #24	PYCR2 (ENSCHIG00000022032) #23	ENSCHIG00000017375 #24	TMEM63A (ENSCHIG00000026549) #25	EPHX1 (ENSCHIG00000017919) #26	SRP9 (ENSCHIG00000006407) #37	ENSCHIG00000004057	ENSCHIG00000000542	ENAH (ENSCHIG00000022407) #36	LBR (ENSCHIG00000013607) #35	DNAH14 (ENSCHIG00000021801) #34	CNIH3 (ENSCHIG00000015311) #32	ENSCHIG00000008380	WDR26 (ENSCHIG00000020527) #31	CNIH4 (ENSCHIG00000014392) #30	NVL (ENSCHIG00000001224) #29
Rambouillet Sheep	MODERN SPECIES	3	ENSOARG00020003854 ##20	SCCPDH (ENSOARG00020003810) #8	ENSOARG00020003724 #9	AHCTF1 (ENSOARG00020003268) #10	CDC42BPA (ENSOARG00020019926) #11	COQ8A (ENSOARG00020019681) #12	PSEN2 (ENSOARG00020019535) #13	ITPKB (ENSOARG00020019465) #14	STUM (ENSOARG00020019418) #15	PARP1 (ENSOARG00020019277) #16	LIN9 (ENSOARG00020018902) #17	MIXL1 (ENSOARG00020018842) #18	ACBD3 (ENSOARG00020018756) #19	H3F3A (ENSOARG00020018672) ##20	SDE2 (ENSOARG00020018625) #21	ENSOARG00020018575 #24	PYCR2 (ENSOARG00020018457) #23	ENSOARG00020018411 #24	TMEM63A (ENSOARG00020018308) #25	EPHX1 (ENSOARG00020018225) #26	SRP9 (ENSOARG00020018121) #37	ENSOARG00020018102	ENSOARG00020018058 #36	ENAH (ENSOARG00020017437) #36	LBR (ENSOARG00020017338) #35	ENSOARG00020017311	DNAH14 (ENSOARG00020016617) #34	CNIH3 (ENSOARG00020016440) #32	ENSOARG00020016393	WDR26 (ENSOARG00020016098) #31	CNIH4 (ENSOARG00020015970) #30
Bovinae	ANCESTRAL SPECIES	12	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970
Bos	ANCESTRAL SPECIES	12	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970
Bos_a	ANCESTRAL SPECIES	8	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970
Domestic yak	MODERN SPECIES	5	AHCTF1 (ENSBGRG00000006477) #10	CDC42BPA (ENSBGRG00000006051) #11	COQ8A (ENSBGRG00000005906) #12	PSEN2 (ENSBGRG00000005715) #13	ITPKB (ENSBGRG00000005683) #14	ENSBGRG00000005664 #15	PARP1 (ENSBGRG00000005223) #16	LIN9 (ENSBGRG00000005002) #17	MIXL1 (ENSBGRG00000004952) #18	ENSBGRG00000004942	ACBD3 (ENSBGRG00000004916) #19	ENSBGRG00000004896	H3-3A (ENSBGRG00000004866) #20	ENSBGRG00000004846	SDE2 (ENSBGRG00000004760) #21	ENSBGRG00000004709 #24	PYCR2 (ENSBGRG00000004674) #23	ENSBGRG00000004607 #24	TMEM63A (ENSBGRG00000004465) #25	EPHX1 (ENSBGRG00000004302) #26	SRP9 (ENSBGRG00000004171) #37	ENAH (ENSBGRG00000003960) #36	LBR (ENSBGRG00000003827) #35	ENSBGRG00000003785 #34	ENSBGRG00000003740 #34	ENSBGRG00000003672	CNIH3 (ENSBGRG00000011424) #32	WDR26 (ENSBGRG00000011013) #31	CNIH4 (ENSBGRG00000010701) #30	NVL (ENSBGRG00000010007) #29	DEGS1 (ENSBGRG00000009888) #28
Wild yak	MODERN SPECIES	1893										ENSBMUG00000014506 #16	LIN9 (ENSBMUG00000015437) #17	MIXL1 (ENSBMUG00000015459) #18	ACBD3 (ENSBMUG00000015476) #19	ENSBMUG00000015502 ##20	SDE2 (ENSBMUG00000015514) #21	ENSBMUG00000015525 #24	PYCR2 (ENSBMUG00000015566) #23
Bos_b	ANCESTRAL SPECIES	9	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Cow	MODERN SPECIES	7	ENSBTAG00000049714 #9	AHCTF1 (ENSBTAG00000013949) #10	CDC42BPA (ENSBTAG00000022777) #11	COQ8A (ENSBTAG00000021880) #12	PSEN2 (ENSBTAG00000013197) #13	ITPKB (ENSBTAG00000053007) #14	ENSBTAG00000033252	STUM (ENSBTAG00000024560) #15	ENSBTAG00000047233	PARP1 (ENSBTAG00000000837) #16	LIN9 (ENSBTAG00000033267) #17	MIXL1 (ENSBTAG00000002139) #18	ACBD3 (ENSBTAG00000013128) #19	H3-3A (ENSBTAG00000024561) ##20	SDE2 (ENSBTAG00000012787) #21	ENSBTAG00000054752 #24	PYCR2 (ENSBTAG00000005835) #23	LEFTY2 (ENSBTAG00000055022) #24	TMEM63A (ENSBTAG00000002854) #25	EPHX1 (ENSBTAG00000000140) #26	SRP9 (ENSBTAG00000033322) #37	ENAH (ENSBTAG00000016185) #36	LBR (ENSBTAG00000008453) #35	DNAH14 (ENSBTAG00000008449) #34	CNIH3 (ENSBTAG00000053199) #32	WDR26 (ENSBTAG00000011785) #31	CNIH4 (ENSBTAG00000019471) #30	NVL (ENSBTAG00000006718) #29	DEGS1 (ENSBTAG00000012705) #28	FBXO28 (ENSBTAG00000019538)	TP53BP2 (ENSBTAG00000012781)
Hybrid Bos Indicus	MODERN SPECIES	7	AHCTF1 (ENSBIXG00005026527) #10	CDC42BPA (ENSBIXG00005026924) #11	COQ8A (ENSBIXG00005027082) #12	PSEN2 (ENSBIXG00005004681) #13	ITPKB (ENSBIXG00005027239) #14	ENSBIXG00005027257	ENSBIXG00005027292 #15	ENSBIXG00005007774	PARP1 (ENSBIXG00005027371) #16	LIN9 (ENSBIXG00005027424) #17	MIXL1 (ENSBIXG00005027457) #18	ENSBIXG00005027464	ACBD3 (ENSBIXG00005027541) #19	ENSBIXG00005027583 ##20	SDE2 (ENSBIXG00005027604) #21	ENSBIXG00005027638 #24	PYCR2 (ENSBIXG00005004750) #23	ENSBIXG00005004759 #24	TMEM63A (ENSBIXG00005027791) #25	EPHX1 (ENSBIXG00005027913) #26	SRP9 (ENSBIXG00005027974) #37	ENAH (ENSBIXG00005028092) #36	LBR (ENSBIXG00005028146) #35	DNAH14 (ENSBIXG00005004917) #34	CNIH3 (ENSBIXG00005028617) #32	WDR26 (ENSBIXG00005002380) #31	CNIH4 (ENSBIXG00005002358) #30	DEGS1 (ENSBIXG00005028737) #28	NVL (ENSBIXG00005028887) #29	FBXO28 (ENSBIXG00005028929)	TP53BP2 (ENSBIXG00005002081)
American bison	MODERN SPECIES	3231	SCCPDH (ENSBBBG00000011719) #8	ENSBBBG00000002173 #9	AHCTF1 (ENSBBBG00000011807) #10	CDC42BPA (ENSBBBG00000012129) #11	COQ8A (ENSBBBG00000012196) #12	PSEN2 (ENSBBBG00000012223) #13	ITPKB (ENSBBBG00000012230) #14	STUM (ENSBBBG00000012244) #15	ENSBBBG00000012249	PARP1 (ENSBBBG00000012265) #16	LIN9 (ENSBBBG00000002326) #17	ENSBBBG00000001928	ACBD3 (ENSBBBG00000012298) #19	ENSBBBG00000012307 #20	SDE2 (ENSBBBG00000012313) #21	ENSBBBG00000012320 #24	PYCR2 (ENSBBBG00000012333) #23	ENSBBBG00000012339 #24	TMEM63A (ENSBBBG00000012352) #25	EPHX1 (ENSBBBG00000002344) #26	SRP9 (ENSBBBG00000002346) #37	ENAH (ENSBBBG00000002368) #36	LBR (ENSBBBG00000012450) #35	DNAH14 (ENSBBBG00000007448) #34	CNIH3 (ENSBBBG00000002423) #32	ENSBBBG00000012622	WDR26 (ENSBBBG00000012642) #31	CNIH4 (ENSBBBG00000012671) #30	NVL (ENSBBBG00000002471) #29	DEGS1 (ENSBBBG00000012791) #28	FBXO28 (ENSBBBG00000012804)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	188				PARP1 (ENSMMSG00000019082) #16	LIN9 (ENSMMSG00000019171) #17	MIXL1 (ENSMMSG00000019256) #18	ENSMMSG00000019292	ENSMMSG00000019312	ENSMMSG00000019330	ACBD3 (ENSMMSG00000019345) #19	ENSMMSG00000019373 ##20	SDE2 (ENSMMSG00000019388) #21	ENSMMSG00000019422	ENSMMSG00000019436 #24	PYCR2 (ENSMMSG00000019466) #23	ENSMMSG00000019519 #24	TMEM63A (ENSMMSG00000019545) #25	EPHX1 (ENSMMSG00000019599) #26	SRP9 (ENSMMSG00000019636) #37	ENAH (ENSMMSG00000019676) #36	LBR (ENSMMSG00000019704) #35	DNAH14 (ENSMMSG00000019767) #34	CNIH3 (ENSMMSG00000020039) #32	WDR26 (ENSMMSG00000020076) #31	ENSMMSG00000020244 #30	NVL (ENSMMSG00000020360) #29	ENSMMSG00000020522	DEGS1 (ENSMMSG00000020549) #28	FBXO28 (ENSMMSG00000020579)	ENSMMSG00000020616	TP53BP2 (ENSMMSG00000020632)
Siberian musk deer	MODERN SPECIES	188						PARP1 (ENSMMSG00000019082) #16	LIN9 (ENSMMSG00000019171) #17	MIXL1 (ENSMMSG00000019256) #18	ENSMMSG00000019292	ENSMMSG00000019312	ENSMMSG00000019330	ACBD3 (ENSMMSG00000019345) #19	ENSMMSG00000019373 ##20	SDE2 (ENSMMSG00000019388) #21	ENSMMSG00000019422	ENSMMSG00000019436 #24	PYCR2 (ENSMMSG00000019466) #23	ENSMMSG00000019519 #24	TMEM63A (ENSMMSG00000019545) #25	EPHX1 (ENSMMSG00000019599) #26	SRP9 (ENSMMSG00000019636) #37	ENAH (ENSMMSG00000019676) #36	LBR (ENSMMSG00000019704) #35	DNAH14 (ENSMMSG00000019767) #34	CNIH3 (ENSMMSG00000020039) #32	WDR26 (ENSMMSG00000020076) #31	ENSMMSG00000020244 #30	NVL (ENSMMSG00000020360) #29	ENSMMSG00000020522	DEGS1 (ENSMMSG00000020549) #28	FBXO28 (ENSMMSG00000020579)
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	5	AHCTF1 (ENSCHYG00000011282) #10	ENSCHYG00000011242	CDC42BPA (ENSCHYG00000010016) #11	COQ8A (ENSCHYG00000009793) #12	PSEN2 (ENSCHYG00000009644) #13	ITPKB (ENSCHYG00000009603) #14	ENSCHYG00000009567 #15	PARP1 (ENSCHYG00000009348) #16	LIN9 (ENSCHYG00000009023) #17	MIXL1 (ENSCHYG00000008961) #18	ACBD3 (ENSCHYG00000008896) #19	ENSCHYG00000008774 #20	SDE2 (ENSCHYG00000008711) #21	ENSCHYG00000008669 #24	PYCR2 (ENSCHYG00000008616) #23	ENSCHYG00000008576 #24	TMEM63A (ENSCHYG00000008498) #25	EPHX1 (ENSCHYG00000008370) #26	ENAH (ENSCHYG00000008178) #36	LBR (ENSCHYG00000008100) #35	DNAH14 (ENSCHYG00000007743) #34	ENSCHYG00000007691	ENSCHYG00000007678	CNIH3 (ENSCHYG00000007606) #32	ENSCHYG00000007572	WDR26 (ENSCHYG00000007505) #31	CNIH4 (ENSCHYG00000007424) #30	ENSCHYG00000007273 #29	DEGS1 (ENSCHYG00000007227) #28	FBXO28 (ENSCHYG00000007189)	TP53BP2 (ENSCHYG00000006921)
Yarkand deer	MODERN SPECIES	5	ENSCHYG00000011947 #8	ENSCHYG00000011764 #9	AHCTF1 (ENSCHYG00000011282) #10	ENSCHYG00000011242	CDC42BPA (ENSCHYG00000010016) #11	COQ8A (ENSCHYG00000009793) #12	PSEN2 (ENSCHYG00000009644) #13	ITPKB (ENSCHYG00000009603) #14	ENSCHYG00000009567 #15	PARP1 (ENSCHYG00000009348) #16	LIN9 (ENSCHYG00000009023) #17	MIXL1 (ENSCHYG00000008961) #18	ACBD3 (ENSCHYG00000008896) #19	ENSCHYG00000008774 #20	SDE2 (ENSCHYG00000008711) #21	ENSCHYG00000008669 #24	PYCR2 (ENSCHYG00000008616) #23	ENSCHYG00000008576 #24	TMEM63A (ENSCHYG00000008498) #25	EPHX1 (ENSCHYG00000008370) #26	ENAH (ENSCHYG00000008178) #36	LBR (ENSCHYG00000008100) #35	DNAH14 (ENSCHYG00000007743) #34	ENSCHYG00000007691	ENSCHYG00000007678	CNIH3 (ENSCHYG00000007606) #32	ENSCHYG00000007572	WDR26 (ENSCHYG00000007505) #31	CNIH4 (ENSCHYG00000007424) #30	ENSCHYG00000007273 #29	DEGS1 (ENSCHYG00000007227) #28
Camelidae	ANCESTRAL SPECIES	42	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	15	SCCPDH (ENSCDRG00005009923) #8	ENSCDRG00005009657 #9	AHCTF1 (ENSCDRG00005008653) #10	CDC42BPA (ENSCDRG00005004650) #11	COQ8A (ENSCDRG00005004392) #12	PSEN2 (ENSCDRG00005004293) #13	ITPKB (ENSCDRG00005004264) #14	STUM (ENSCDRG00005004232) #15	PARP1 (ENSCDRG00005004094) #16	LIN9 (ENSCDRG00005003856) #17	MIXL1 (ENSCDRG00005003819) #18	ACBD3 (ENSCDRG00005003797) #19	ENSCDRG00005003780	ENSCDRG00005003751 #20	SDE2 (ENSCDRG00005003707) #21	ENSCDRG00005003588 #24	PYCR2 (ENSCDRG00005020074) #23	ENSCDRG00005020045 #24	TMEM63A (ENSCDRG00005020005) #25	EPHX1 (ENSCDRG00005019981) #26	SRP9 (ENSCDRG00005019952) #37	ENSCDRG00005019933	ENAH (ENSCDRG00005019805) #36	LBR (ENSCDRG00005019758) #35	DNAH14 (ENSCDRG00005019610) #34	CNIH3 (ENSCDRG00005019575) #32	WDR26 (ENSCDRG00005019563) #31	CNIH4 (ENSCDRG00005019545) #30	NVL (ENSCDRG00005019414) #29	DEGS1 (ENSCDRG00005019393) #28	FBXO28 (ENSCDRG00005019370)
Arabian camel	MODERN SPECIES	15	AHCTF1 (ENSCDRG00005008653) #10	CDC42BPA (ENSCDRG00005004650) #11	COQ8A (ENSCDRG00005004392) #12	PSEN2 (ENSCDRG00005004293) #13	ITPKB (ENSCDRG00005004264) #14	STUM (ENSCDRG00005004232) #15	PARP1 (ENSCDRG00005004094) #16	LIN9 (ENSCDRG00005003856) #17	MIXL1 (ENSCDRG00005003819) #18	ACBD3 (ENSCDRG00005003797) #19	ENSCDRG00005003780	ENSCDRG00005003751 #20	SDE2 (ENSCDRG00005003707) #21	ENSCDRG00005003588 #24	PYCR2 (ENSCDRG00005020074) #23	ENSCDRG00005020045 #24	TMEM63A (ENSCDRG00005020005) #25	EPHX1 (ENSCDRG00005019981) #26	SRP9 (ENSCDRG00005019952) #37	ENSCDRG00005019933	ENAH (ENSCDRG00005019805) #36	LBR (ENSCDRG00005019758) #35	DNAH14 (ENSCDRG00005019610) #34	CNIH3 (ENSCDRG00005019575) #32	WDR26 (ENSCDRG00005019563) #31	CNIH4 (ENSCDRG00005019545) #30	NVL (ENSCDRG00005019414) #29	DEGS1 (ENSCDRG00005019393) #28	FBXO28 (ENSCDRG00005019370)	TP53BP2 (ENSCDRG00005019295)	CAPN2 (ENSCDRG00005019228)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Carnivora	ANCESTRAL SPECIES	14	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Caniformia	ANCESTRAL SPECIES	10	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00940000161841.n	ENSGT00390000002970
Ursidae	ANCESTRAL SPECIES	4	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00940000161841.n	ENSGT00390000002970
Ursus	ANCESTRAL SPECIES	90	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505.u #34	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00940000161841.n	ENSGT00390000002970
American black bear	MODERN SPECIES	870																ENSUAMG00000028421 #24	PYCR2 (ENSUAMG00000028420) #23	TMEM63A (ENSUAMG00000028419) #25	EPHX1 (ENSUAMG00000028418) #26
Giant Panda	MODERN SPECIES	18	CNST (ENSAMEG00000006589) #7	SCCPDH (ENSAMEG00000006562) #8	ENSAMEG00000029183 #9	ENSAMEG00000006501 #10	ENSAMEG00000008890 #11	COQ8A (ENSAMEG00000009019) #12	PSEN2 (ENSAMEG00000009070) #13	ITPKB (ENSAMEG00000009097) #14	STUM (ENSAMEG00000009117) #15	PARP1 (ENSAMEG00000014451) #16	LIN9 (ENSAMEG00000014535) #17	MIXL1 (ENSAMEG00000014565) #18	ACBD3 (ENSAMEG00000014568) #19	ENSAMEG00000029116 ##20	SDE2 (ENSAMEG00000014591) #21	ENSAMEG00000014607 #24	PYCR2 (ENSAMEG00000014626) #23	TMEM63A (ENSAMEG00000014638) #25	EPHX1 (ENSAMEG00000027522) #26	SRP9 (ENSAMEG00000014710) #37	ENAH (ENSAMEG00000015746) #36	LBR (ENSAMEG00000015778) #35	DNAH14 (ENSAMEG00000015805) #34	CNIH3 (ENSAMEG00000024773) #32	WDR26 (ENSAMEG00000015955) #31	CNIH4 (ENSAMEG00000015944) #30	NVL (ENSAMEG00000015910) #29	DEGS1 (ENSAMEG00000015906) #28	ENSAMEG00000029292	FBXO28 (ENSAMEG00000015894)	TP53BP2 (ENSAMEG00000015840)
Mustelinae	ANCESTRAL SPECIES	51	ENSGT00940000159554	ENSGT01030000234618.B	ENSGT00390000013877	ENSGT00940000155161	ENSGT00390000008829	ENSGT00520000059630	ENSGT00940000162785	ENSGT00550000074794	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00940000161841.n	ENSGT00390000002970	ENSGT00940000153463.b
American mink	DUPLICATION
American mink	MODERN SPECIES	73	ZBTB37 (ENSNVIG00000014530)	DARS2 (ENSNVIG00000014589)	CENPL (ENSNVIG00000014636)	KLHL20 (ENSNVIG00000014655)	ANKRD45 (ENSNVIG00000014684)	TEX50 (ENSNVIG00000014691)	SLC9C2 (ENSNVIG00000014705)	PRDX6 (ENSNVIG00000014746)	ITPKB (ENSNVIG00000014754) #14	STUM (ENSNVIG00000014784) #15	PARP1 (ENSNVIG00000014805) #16	LIN9 (ENSNVIG00000014864) #17	ACBD3 (ENSNVIG00000014901) #19	ENSNVIG00000014926 ##20	SDE2 (ENSNVIG00000014947) #21	ENSNVIG00000014955 #24	PYCR2 (ENSNVIG00000014966) #23	ENSNVIG00000015022 #24	TMEM63A (ENSNVIG00000015042) #25	EPHX1 (ENSNVIG00000015107) #26	SRP9 (ENSNVIG00000015125) #37	ENAH (ENSNVIG00000015156) #36	LBR (ENSNVIG00000015260) #35	DNAH14 (ENSNVIG00000015327) #34	CNIH3 (ENSNVIG00000015610) #32	WDR26 (ENSNVIG00000015630) #31	CNIH4 (ENSNVIG00000015648) #30	NVL (ENSNVIG00000015670) #29	DEGS1 (ENSNVIG00000015892) #28	ENSNVIG00000015907	ENSNVIG00000015922
American mink	MODERN SPECIES	73	CENPL (ENSNVIG00000014636)	KLHL20 (ENSNVIG00000014655)	ANKRD45 (ENSNVIG00000014684)	TEX50 (ENSNVIG00000014691)	SLC9C2 (ENSNVIG00000014705)	PRDX6 (ENSNVIG00000014746)	ITPKB (ENSNVIG00000014754) #14	STUM (ENSNVIG00000014784) #15	PARP1 (ENSNVIG00000014805) #16	LIN9 (ENSNVIG00000014864) #17	ACBD3 (ENSNVIG00000014901) #19	ENSNVIG00000014926 ##20	SDE2 (ENSNVIG00000014947) #21	ENSNVIG00000014955 #24	PYCR2 (ENSNVIG00000014966) #23	ENSNVIG00000015022 #24	TMEM63A (ENSNVIG00000015042) #25	EPHX1 (ENSNVIG00000015107) #26	SRP9 (ENSNVIG00000015125) #37	ENAH (ENSNVIG00000015156) #36	LBR (ENSNVIG00000015260) #35	DNAH14 (ENSNVIG00000015327) #34	CNIH3 (ENSNVIG00000015610) #32	WDR26 (ENSNVIG00000015630) #31	CNIH4 (ENSNVIG00000015648) #30	NVL (ENSNVIG00000015670) #29	DEGS1 (ENSNVIG00000015892) #28	ENSNVIG00000015907	ENSNVIG00000015922	TP53BP2 (ENSNVIG00000015939)	CAPN2 (ENSNVIG00000015965)
Ferret	MODERN SPECIES	246	ZBTB37 (ENSMPUG00000004728)	DARS2 (ENSMPUG00000004716)	CENPL (ENSMPUG00000004707)	KLHL20 (ENSMPUG00000004695)	ANKRD45 (ENSMPUG00000004688)	SLC9C2 (ENSMPUG00000004656)	PRDX6 (ENSMPUG00000004648)	ENSMPUG00000018474	ITPKB (ENSMPUG00000004596) #14	PARP1 (ENSMPUG00000004585) #16	LIN9 (ENSMPUG00000004573) #17	ACBD3 (ENSMPUG00000004563) #19	ENSMPUG00000004555 #20	SDE2 (ENSMPUG00000004543) #21	ENSMPUG00000004540	ENSMPUG00000004487 #24	PYCR2 (ENSMPUG00000004479) #23	TMEM63A (ENSMPUG00000004462) #25	ENSMPUG00000004459	EPHX1 (ENSMPUG00000004409) #26	ENAH (ENSMPUG00000004394) #36	LBR (ENSMPUG00000004384) #35	ENSMPUG00000004174 #34	CNIH3 (ENSMPUG00000004163) #32	WDR26 (ENSMPUG00000004049) #31	NVL (ENSMPUG00000004031) #29	DEGS1 (ENSMPUG00000004010) #28	FBXO28 (ENSMPUG00000004002)	ENSMPUG00000003995	TP53BP2 (ENSMPUG00000003981)	CAPN2 (ENSMPUG00000003968)
Canidae	ANCESTRAL SPECIES	1	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000182891.a.a.b.a.a.a.b.a.a.x.a	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00390000004799 #8	ENSGT00950000183029.B.c.b.b.b.i.b	ENSGT00940000178689	ENSGT00390000018900 #10	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT01030000238203	ENSGT00390000000411.g.b	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00390000000412	ENSGT00950000183123.g.a.a.b	ENSGT00950000182891.a.a.b.a.a.a.b.a.a.x.a	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28
Dog	DUPLICATION
Dog	MODERN SPECIES	35	ENSCAFG00845006225 #9	AHCTF1 (ENSCAFG00845006427) #10	CDC42BPA (ENSCAFG00845007016) #11	ENSCAFG00845007754	COQ8A (ENSCAFG00845007817) #12	PSEN2 (ENSCAFG00845008023) #13	ITPKB (ENSCAFG00845008212) #14	STUM (ENSCAFG00845008283) #15	PARP1 (ENSCAFG00845008325) #16	LIN9 (ENSCAFG00845008477) #17	MIXL1 (ENSCAFG00845008836) #18	ENSCAFG00845008860	ACBD3 (ENSCAFG00845008884) #19	ENSCAFG00845008917 ##20	SDE2 (ENSCAFG00845008939) #21	ENSCAFG00845008972 #24	ENSCAFG00845009009	PYCR2 (ENSCAFG00845009034) #23	ENSCAFG00845009114 #24	TMEM63A (ENSCAFG00845009155) #25	EPHX1 (ENSCAFG00845009397) #26	SRP9 (ENSCAFG00845009505) #37	ENAH (ENSCAFG00845009892) #36	LBR (ENSCAFG00845010980) #35	DNAH14 (ENSCAFG00845011498) #34	ENSCAFG00845012247	ENSCAFG00845012260	CNIH3 (ENSCAFG00845012278) #32	WDR26 (ENSCAFG00845012382) #31	CNIH4 (ENSCAFG00845012452) #30	NVL (ENSCAFG00845012656) #29
Dog	MODERN SPECIES	35	ENSCAFG00845007754	COQ8A (ENSCAFG00845007817) #12	PSEN2 (ENSCAFG00845008023) #13	ITPKB (ENSCAFG00845008212) #14	STUM (ENSCAFG00845008283) #15	PARP1 (ENSCAFG00845008325) #16	LIN9 (ENSCAFG00845008477) #17	MIXL1 (ENSCAFG00845008836) #18	ENSCAFG00845008860	ACBD3 (ENSCAFG00845008884) #19	ENSCAFG00845008917 ##20	SDE2 (ENSCAFG00845008939) #21	ENSCAFG00845008972 #24	ENSCAFG00845009009	PYCR2 (ENSCAFG00845009034) #23	ENSCAFG00845009114 #24	TMEM63A (ENSCAFG00845009155) #25	EPHX1 (ENSCAFG00845009397) #26	SRP9 (ENSCAFG00845009505) #37	ENAH (ENSCAFG00845009892) #36	LBR (ENSCAFG00845010980) #35	DNAH14 (ENSCAFG00845011498) #34	ENSCAFG00845012247	ENSCAFG00845012260	CNIH3 (ENSCAFG00845012278) #32	WDR26 (ENSCAFG00845012382) #31	CNIH4 (ENSCAFG00845012452) #30	NVL (ENSCAFG00845012656) #29	ENSCAFG00845012857	DEGS1 (ENSCAFG00845012915) #28	FBXO28 (ENSCAFG00845012940)
Dingo	MODERN SPECIES	271	AHCTF1 (ENSCAFG00020001201) #10	ENSCAFG00020001339 #11	ENSCAFG00020001351 #11	CDC42BPA (ENSCAFG00020001364) #11	COQ8A (ENSCAFG00020001368) #12	PSEN2 (ENSCAFG00020001399) #13	ITPKB (ENSCAFG00020001406) #14	STUM (ENSCAFG00020001421) #15	PARP1 (ENSCAFG00020001660) #16	LIN9 (ENSCAFG00020003192) #17	ENSCAFG00020003200	ENSCAFG00020003202	ACBD3 (ENSCAFG00020003210) #19	ENSCAFG00020003228 ##20	SDE2 (ENSCAFG00020003247) #21	ENSCAFG00020003248 #24	PYCR2 (ENSCAFG00020003264) #23	TMEM63A (ENSCAFG00020003274) #25	EPHX1 (ENSCAFG00020003279) #26	SRP9 (ENSCAFG00020003285) #37	ENAH (ENSCAFG00020003296) #36	LBR (ENSCAFG00020003321) #35	ENSCAFG00020003326 #34	ENSCAFG00020003333 #34	ENSCAFG00020003357	ENSCAFG00020003361	ENSCAFG00020003365	CNIH3 (ENSCAFG00020003397) #32	WDR26 (ENSCAFG00020003429) #31	CNIH4 (ENSCAFG00020003678) #30	NVL (ENSCAFG00020003680) #29
Felidae	ANCESTRAL SPECIES	11	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Panthera	ANCESTRAL SPECIES	19	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a.v #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Panthera_a	ANCESTRAL SPECIES	19	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a.v #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
leopard	DUPLICATION
leopard	MODERN SPECIES	4	TFB2M (ENSPPRG00000007350)	CNST (ENSPPRG00000008188) #7	SCCPDH (ENSPPRG00000008599) #8	ENSPPRG00000009605 #9	CDC42BPA (ENSPPRG00000024128) #11	COQ8A (ENSPPRG00000022935) #12	PSEN2 (ENSPPRG00000002017) #13	ITPKB (ENSPPRG00000002311) #14	STUM (ENSPPRG00000002817) #15	PARP1 (ENSPPRG00000003528) #16	LIN9 (ENSPPRG00000003816) #17	MIXL1 (ENSPPRG00000004369) #18	ENSPPRG00000004470 #19	H3-3A (ENSPPRG00000004900) #20	SDE2 (ENSPPRG00000005139) #21	ENSPPRG00000006189 #24	PYCR2 (ENSPPRG00000008433) #23	ENSPPRG00000008898 #24	TMEM63A (ENSPPRG00000010133) #25	EPHX1 (ENSPPRG00000011566) #26	SRP9 (ENSPPRG00000011732) #37	ENAH (ENSPPRG00000015078) #36	LBR (ENSPPRG00000018166) #35	DNAH14 (ENSPPRG00000006163) #34
leopard	MODERN SPECIES	4	SCCPDH (ENSPPRG00000008599) #8	ENSPPRG00000009605 #9	CDC42BPA (ENSPPRG00000024128) #11	COQ8A (ENSPPRG00000022935) #12	PSEN2 (ENSPPRG00000002017) #13	ITPKB (ENSPPRG00000002311) #14	STUM (ENSPPRG00000002817) #15	PARP1 (ENSPPRG00000003528) #16	LIN9 (ENSPPRG00000003816) #17	MIXL1 (ENSPPRG00000004369) #18	ENSPPRG00000004470 #19	H3-3A (ENSPPRG00000004900) #20	SDE2 (ENSPPRG00000005139) #21	ENSPPRG00000006189 #24	PYCR2 (ENSPPRG00000008433) #23	ENSPPRG00000008898 #24	TMEM63A (ENSPPRG00000010133) #25	EPHX1 (ENSPPRG00000011566) #26	SRP9 (ENSPPRG00000011732) #37	ENAH (ENSPPRG00000015078) #36	LBR (ENSPPRG00000018166) #35	DNAH14 (ENSPPRG00000006163) #34
lion	MODERN SPECIES	464																ENSPLOG00000019030 #24
Cat	MODERN SPECIES	248	TFB2M (ENSFCAG00000021951)	CNST (ENSFCAG00000028075) #7	SCCPDH (ENSFCAG00000010642) #8	ENSFCAG00000024485 #9	AHCTF1 (ENSFCAG00000014392) #10	CDC42BPA (ENSFCAG00000008784) #11	COQ8A (ENSFCAG00000044578) #12	PSEN2 (ENSFCAG00000008781) #13	ITPKB (ENSFCAG00000025620) #14	STUM (ENSFCAG00000043992) #15	PARP1 (ENSFCAG00000005777) #16	LIN9 (ENSFCAG00000010528) #17	ACBD3 (ENSFCAG00000030208) #19	SDE2 (ENSFCAG00000015082) #21	PYCR2 (ENSFCAG00000012541) #23	ENSFCAG00000039160 #24	TMEM63A (ENSFCAG00000044147) #25	EPHX1 (ENSFCAG00000006965) #26	SRP9 (ENSFCAG00000010275) #37	ENAH (ENSFCAG00000028416) #36	DNAH14 (ENSFCAG00000023988) #34	CNIH3 (ENSFCAG00000014101) #32	WDR26 (ENSFCAG00000002464) #31	CNIH4 (ENSFCAG00000038772) #30	NVL (ENSFCAG00000009876) #29	DEGS1 (ENSFCAG00000000202) #28	FBXO28 (ENSFCAG00000022457)	TP53BP2 (ENSFCAG00000010673)	CAPN2 (ENSFCAG00000010671)	ENSFCAG00000010669	CCDC185 (ENSFCAG00000050667)
Laurasiatheria_c	ANCESTRAL SPECIES	25	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Chiroptera	ANCESTRAL SPECIES	30	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000178689	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Megabat	DUPLICATION
Megabat	MODERN SPECIES	1071														ENSPVAG00000004797 #20	SDE2 (ENSPVAG00000004796) #21	ENSPVAG00000004795 #24	PYCR2 (ENSPVAG00000004794) #23	ENSPVAG00000004790 #24	TMEM63A (ENSPVAG00000004786) #25	EPHX1 (ENSPVAG00000004784) #26
Megabat	MODERN SPECIES	1071												ENSPVAG00000004797 #20	SDE2 (ENSPVAG00000004796) #21	ENSPVAG00000004795 #24	PYCR2 (ENSPVAG00000004794) #23	ENSPVAG00000004790 #24	TMEM63A (ENSPVAG00000004786) #25	EPHX1 (ENSPVAG00000004784) #26
Microchiroptera	ANCESTRAL SPECIES	32	ENSGT00390000004799 #8	ENSGT00940000178689	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	19	ENSRFEG00010015342	AHCTF1 (ENSRFEG00010015223) #10	ENSRFEG00010015186	CDC42BPA (ENSRFEG00010014755) #11	COQ8A (ENSRFEG00010014597) #12	PSEN2 (ENSRFEG00010014406) #13	ENSRFEG00010014341	ITPKB (ENSRFEG00010014319) #14	STUM (ENSRFEG00010014278) #15	PARP1 (ENSRFEG00010014181) #16	LIN9 (ENSRFEG00010013701) #17	MIXL1 (ENSRFEG00010013582) #18	ACBD3 (ENSRFEG00010013539) #19	ENSRFEG00010021810 ##20	SDE2 (ENSRFEG00010021807) #21	ENSRFEG00010021799 #24	PYCR2 (ENSRFEG00010021788) #23	ENSRFEG00010021782 #24	TMEM63A (ENSRFEG00010021763) #25	EPHX1 (ENSRFEG00010021750) #26	ENSRFEG00010021741 #37	ENAH (ENSRFEG00010021710) #36	LBR (ENSRFEG00010021686) #35	DNAH14 (ENSRFEG00010021629) #34	CNIH3 (ENSRFEG00010021586) #32	WDR26 (ENSRFEG00010021568) #31	CNIH4 (ENSRFEG00010021549) #30	NVL (ENSRFEG00010021511) #29	DEGS1 (ENSRFEG00010021497) #28	FBXO28 (ENSRFEG00010021487)	TP53BP2 (ENSRFEG00010021449)
Greater horseshoe bat	MODERN SPECIES	19	ENSRFEG00010015186	CDC42BPA (ENSRFEG00010014755) #11	COQ8A (ENSRFEG00010014597) #12	PSEN2 (ENSRFEG00010014406) #13	ENSRFEG00010014341	ITPKB (ENSRFEG00010014319) #14	STUM (ENSRFEG00010014278) #15	PARP1 (ENSRFEG00010014181) #16	LIN9 (ENSRFEG00010013701) #17	MIXL1 (ENSRFEG00010013582) #18	ACBD3 (ENSRFEG00010013539) #19	ENSRFEG00010021810 ##20	SDE2 (ENSRFEG00010021807) #21	ENSRFEG00010021799 #24	PYCR2 (ENSRFEG00010021788) #23	ENSRFEG00010021782 #24	TMEM63A (ENSRFEG00010021763) #25	EPHX1 (ENSRFEG00010021750) #26	ENSRFEG00010021741 #37	ENAH (ENSRFEG00010021710) #36	LBR (ENSRFEG00010021686) #35	DNAH14 (ENSRFEG00010021629) #34	CNIH3 (ENSRFEG00010021586) #32	WDR26 (ENSRFEG00010021568) #31	CNIH4 (ENSRFEG00010021549) #30	NVL (ENSRFEG00010021511) #29	DEGS1 (ENSRFEG00010021497) #28	FBXO28 (ENSRFEG00010021487)	TP53BP2 (ENSRFEG00010021449)	CAPN2 (ENSRFEG00010021418)	CAPN8 (ENSRFEG00010021382)
Microbat	MODERN SPECIES	2094															SDE2 (ENSMLUG00000015272) #21	ENSMLUG00000005154 #24	PYCR2 (ENSMLUG00000000978) #23
Equus	DUPLICATION
Equus	ANCESTRAL SPECIES	41	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.mc #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.lc #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Donkey	MODERN SPECIES	23	ENSEASG00005031616	SCCPDH (ENSEASG00005005739) #8	ENSEASG00005036075 #9	ENSEASG00005005859 #10	ENSEASG00005006206 #11	COQ8A (ENSEASG00005013257) #12	PSEN2 (ENSEASG00005013260) #13	ITPKB (ENSEASG00005013263) #14	STUM (ENSEASG00005033549) #15	PARP1 (ENSEASG00005013275) #16	LIN9 (ENSEASG00005013290) #17	MIXL1 (ENSEASG00005013350) #18	ACBD3 (ENSEASG00005013353) #19	ENSEASG00005013355 ##20	SDE2 (ENSEASG00005013356) #21	ENSEASG00005030091 #24	PYCR2 (ENSEASG00005013358) #23	ENSEASG00005025761 #24	TMEM63A (ENSEASG00005013377) #25	EPHX1 (ENSEASG00005013496) #26	ENSEASG00005013509 #37	ENAH (ENSEASG00005013528) #36	LBR (ENSEASG00005013556) #35	DNAH14 (ENSEASG00005033325) #34	CNIH3 (ENSEASG00005038744) #32	WDR26 (ENSEASG00005013590) #31	CNIH4 (ENSEASG00005013594) #30	NVL (ENSEASG00005013599) #29	DEGS1 (ENSEASG00005013608) #28	FBXO28 (ENSEASG00005013614)	TP53BP2 (ENSEASG00005013621)
Horse	MODERN SPECIES	23	ENSECAG00000038309 #9	AHCTF1 (ENSECAG00000011125) #10	CDC42BPA (ENSECAG00000017881) #11	COQ8A (ENSECAG00000019955) #12	PSEN2 (ENSECAG00000008285) #13	ITPKB (ENSECAG00000014769) #14	STUM (ENSECAG00000037774) #15	PARP1 (ENSECAG00000019207) #16	LIN9 (ENSECAG00000014325) #17	MIXL1 (ENSECAG00000033929) #18	ACBD3 (ENSECAG00000000084) #19	H3-3A (ENSECAG00000006904) ##20	SDE2 (ENSECAG00000008052) #21	ENSECAG00000038401 #24	PYCR2 (ENSECAG00000010882) #23	ENSECAG00000039385 #24	TMEM63A (ENSECAG00000018566) #25	EPHX1 (ENSECAG00000019677) #26	SRP9 (ENSECAG00000054865) ##37	ENAH (ENSECAG00000022447) #36	LBR (ENSECAG00000011192) #35	DNAH14 (ENSECAG00000044830) #34	ENSECAG00000060177	CNIH3 (ENSECAG00000019237) #32	WDR26 (ENSECAG00000020139) #31	CNIH4 (ENSECAG00000010873) #30	NVL (ENSECAG00000014421) #29	DEGS1 (ENSECAG00000000186) #28	FBXO28 (ENSECAG00000002428)	TP53BP2 (ENSECAG00000005927)	CAPN2 (ENSECAG00000008742)
Equus	ANCESTRAL SPECIES	41	ENSGT00940000171704	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.mc #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.lc #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Donkey	MODERN SPECIES	23	ENSEASG00005036075 #9	ENSEASG00005005859 #10	ENSEASG00005006206 #11	COQ8A (ENSEASG00005013257) #12	PSEN2 (ENSEASG00005013260) #13	ITPKB (ENSEASG00005013263) #14	STUM (ENSEASG00005033549) #15	PARP1 (ENSEASG00005013275) #16	LIN9 (ENSEASG00005013290) #17	MIXL1 (ENSEASG00005013350) #18	ACBD3 (ENSEASG00005013353) #19	ENSEASG00005013355 ##20	SDE2 (ENSEASG00005013356) #21	ENSEASG00005030091 #24	PYCR2 (ENSEASG00005013358) #23	ENSEASG00005025761 #24	TMEM63A (ENSEASG00005013377) #25	EPHX1 (ENSEASG00005013496) #26	ENSEASG00005013509 #37	ENAH (ENSEASG00005013528) #36	LBR (ENSEASG00005013556) #35	DNAH14 (ENSEASG00005033325) #34	CNIH3 (ENSEASG00005038744) #32	WDR26 (ENSEASG00005013590) #31	CNIH4 (ENSEASG00005013594) #30	NVL (ENSEASG00005013599) #29	DEGS1 (ENSEASG00005013608) #28	FBXO28 (ENSEASG00005013614)	TP53BP2 (ENSEASG00005013621)	CAPN2 (ENSEASG00005013647)	CAPN8 (ENSEASG00005013672)
Horse	MODERN SPECIES	23	CNST (ENSECAG00000019039)	SCCPDH (ENSECAG00000020866) #8	ENSECAG00000038309 #9	AHCTF1 (ENSECAG00000011125) #10	CDC42BPA (ENSECAG00000017881) #11	COQ8A (ENSECAG00000019955) #12	PSEN2 (ENSECAG00000008285) #13	ITPKB (ENSECAG00000014769) #14	STUM (ENSECAG00000037774) #15	PARP1 (ENSECAG00000019207) #16	LIN9 (ENSECAG00000014325) #17	MIXL1 (ENSECAG00000033929) #18	ACBD3 (ENSECAG00000000084) #19	H3-3A (ENSECAG00000006904) ##20	SDE2 (ENSECAG00000008052) #21	ENSECAG00000038401 #24	PYCR2 (ENSECAG00000010882) #23	ENSECAG00000039385 #24	TMEM63A (ENSECAG00000018566) #25	EPHX1 (ENSECAG00000019677) #26	SRP9 (ENSECAG00000054865) ##37	ENAH (ENSECAG00000022447) #36	LBR (ENSECAG00000011192) #35	DNAH14 (ENSECAG00000044830) #34	ENSECAG00000060177	CNIH3 (ENSECAG00000019237) #32	WDR26 (ENSECAG00000020139) #31	CNIH4 (ENSECAG00000010873) #30	NVL (ENSECAG00000014421) #29	DEGS1 (ENSECAG00000000186) #28	FBXO28 (ENSECAG00000002428)
Eulipotyphla	ANCESTRAL SPECIES	440																ENSGT00390000010056 #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	4072																ENSEEUG00000002371 #24
Hedgehog	MODERN SPECIES	4075																ENSEEUG00000001111 #24
Common shrew	MODERN SPECIES	3088																ENSSARG00000014089 #24	TMEM63A (ENSSARG00000014071) #25	ENSSARG00000014069 #26
Atlantogenata	ANCESTRAL SPECIES	44	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Afrotheria	ANCESTRAL SPECIES	47	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00400000023425	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Afrotheria_a	ANCESTRAL SPECIES	48	ENSGT00940000156766	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Hyrax	DUPLICATION
Hyrax	MODERN SPECIES	10153															SDE2 (ENSPCAG00000011809) #21	ENSPCAG00000011877 #24
Hyrax	MODERN SPECIES	3258																ENSPCAG00000002575 #24
Elephant	DUPLICATION
Elephant	MODERN SPECIES	126	SCCPDH (ENSLAFG00000001357) #8	AHCTF1 (ENSLAFG00000009243) #10	CDC42BPA (ENSLAFG00000002527) #11	COQ8A (ENSLAFG00000002525) #12	PSEN2 (ENSLAFG00000007445) #13	ENSLAFG00000011453 #14	ENSLAFG00000028339 #14	PARP1 (ENSLAFG00000007830) #16	LIN9 (ENSLAFG00000002421) #17	MIXL1 (ENSLAFG00000022623) #18	ACBD3 (ENSLAFG00000009011) #19	ENSLAFG00000021624 ##20	SDE2 (ENSLAFG00000002195) #21	ENSLAFG00000002111 #24	ENSLAFG00000002110 #23	ENSLAFG00000002109 #24	TMEM63A (ENSLAFG00000017739) #25	EPHX1 (ENSLAFG00000017733) #26	SRP9 (ENSLAFG00000004081) #37	ENAH (ENSLAFG00000003931) #36	LBR (ENSLAFG00000010594) #35	ENSLAFG00000026932 #34	CNIH3 (ENSLAFG00000005787) #32	WDR26 (ENSLAFG00000013154) #31	CNIH4 (ENSLAFG00000014819) #30	NVL (ENSLAFG00000014807) #29	DEGS1 (ENSLAFG00000001728) #28	FBXO28 (ENSLAFG00000000621)	TP53BP2 (ENSLAFG00000001919)	CAPN2 (ENSLAFG00000001917)	CAPN8 (ENSLAFG00000001457)
Elephant	MODERN SPECIES	126	TFB2M (ENSLAFG00000015061)	CNST (ENSLAFG00000016089) #7	SCCPDH (ENSLAFG00000001357) #8	AHCTF1 (ENSLAFG00000009243) #10	CDC42BPA (ENSLAFG00000002527) #11	COQ8A (ENSLAFG00000002525) #12	PSEN2 (ENSLAFG00000007445) #13	ENSLAFG00000011453 #14	ENSLAFG00000028339 #14	PARP1 (ENSLAFG00000007830) #16	LIN9 (ENSLAFG00000002421) #17	MIXL1 (ENSLAFG00000022623) #18	ACBD3 (ENSLAFG00000009011) #19	ENSLAFG00000021624 ##20	SDE2 (ENSLAFG00000002195) #21	ENSLAFG00000002111 #24	ENSLAFG00000002110 #23	ENSLAFG00000002109 #24	TMEM63A (ENSLAFG00000017739) #25	EPHX1 (ENSLAFG00000017733) #26	SRP9 (ENSLAFG00000004081) #37	ENAH (ENSLAFG00000003931) #36	LBR (ENSLAFG00000010594) #35	ENSLAFG00000026932 #34	CNIH3 (ENSLAFG00000005787) #32	WDR26 (ENSLAFG00000013154) #31	CNIH4 (ENSLAFG00000014819) #30	NVL (ENSLAFG00000014807) #29	DEGS1 (ENSLAFG00000001728) #28	FBXO28 (ENSLAFG00000000621)	TP53BP2 (ENSLAFG00000001919)
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	13143																ENSETEG00000004742 #24
Tenrec	MODERN SPECIES	11781																ENSETEG00000016785 #24
Xenarthra	ANCESTRAL SPECIES	1004													ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c #23
Sloth	MODERN SPECIES	3588																ENSCHOG00000009015 #24
Armadillo	MODERN SPECIES	549													ENSDNOG00000013412 #37	EPHX1 (ENSDNOG00000009266) #26	TMEM63A (ENSDNOG00000024203) #25	ENSDNOG00000034833 #24	PYCR2 (ENSDNOG00000023877) #23
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c.a #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165101	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B.i #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c.a #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165101	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B.i #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Diprotodontia	ANCESTRAL SPECIES	7	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c.a #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B.i #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00950000183044.a.a.a.c.a #23	ENSGT00940000154582.b.b.b.b	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000160505 #34	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B.i #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1035	ENSVURG00010008362	ENSVURG00010008373 #7	ENSVURG00010008421 #8	ENSVURG00010008436 #10	ENSVURG00010008553 #11	ENSVURG00010008694 #12	ENSVURG00010008755 #13	ENSVURG00010008828 #14	ENSVURG00010008845 #15	ENSVURG00010008888 #16	ENSVURG00010008938 #17	ENSVURG00010008959 #18	ENSVURG00010008978 #19	H3-3A (ENSVURG00010009028) #20	ENSVURG00010009034 #21	ENSVURG00010009049 #24	ENSVURG00010009077 #23	ENSVURG00010009085	ENSVURG00010009115 #25	ENSVURG00010009136 #26	ENSVURG00010009142 #37	ENSVURG00010009183 #36	ENSVURG00010009206 #35	ENSVURG00010009226 #34	ENSVURG00010009246	ENSVURG00010009284 #32	ENSVURG00010009303 #31	ENSVURG00010009318 #30	ENSVURG00010009330 #29	ENSVURG00010009362 #28	ENSVURG00010009368
Common wonbat	MODERN SPECIES	1035	ENSVURG00010015915	ENSVURG00010015925 #7	ENSVURG00010015938 #8	ENSVURG00010015965 #10	ENSVURG00010016001 #11	ENSVURG00010016076 #12	ENSVURG00010016090 #13	ENSVURG00010016107 #14	ENSVURG00010016121 #15	ENSVURG00010016132 #16	ENSVURG00010016145 #17	ENSVURG00010016150 #18	ENSVURG00010016163 #19	ENSVURG00010016172 ##20	ENSVURG00010016188 #21	ENSVURG00010016197 #24	ENSVURG00010016219 #23	ENSVURG00010016227	ENSVURG00010016235 #25	ENSVURG00010016255 #26	ENSVURG00010016263 #37	ENSVURG00010016298 #36	ENSVURG00010016408 #35	ENSVURG00010016426 #34	ENSVURG00010016446	ENSVURG00010016460 #32	ENSVURG00010016481 #31	ENSVURG00010016496 #30	ENSVURG00010016506 #29	ENSVURG00010016543 #28	ENSVURG00010016554
koala	MODERN SPECIES	12	CNST (ENSPCIG00000003285) #7	SCCPDH (ENSPCIG00000003299) #8	ENSPCIG00000003346 #9	AHCTF1 (ENSPCIG00000003367) #10	CDC42BPA (ENSPCIG00000006500) #11	COQ8A (ENSPCIG00000006475) #12	PSEN2 (ENSPCIG00000006466) #13	ITPKB (ENSPCIG00000006460) #14	STUM (ENSPCIG00000006458) #15	PARP1 (ENSPCIG00000006436) #16	LIN9 (ENSPCIG00000017472) #17	MIXL1 (ENSPCIG00000033591) #18	ACBD3 (ENSPCIG00000017469) #19	ENSPCIG00000017467 ##20	SDE2 (ENSPCIG00000017466) #21	ENSPCIG00000017464 #24	ENSPCIG00000017431 #23	ENSPCIG00000017425	TMEM63A (ENSPCIG00000017422) #25	EPHX1 (ENSPCIG00000017401) #26	SRP9 (ENSPCIG00000017399) #37	ENAH (ENSPCIG00000017396) #36	LBR (ENSPCIG00000016938) #35	ENSPCIG00000016927 #34	ENSPCIG00000016922 #34	ENSPCIG00000016915	CNIH3 (ENSPCIG00000016913) #32	WDR26 (ENSPCIG00000016910) #31	ENSPCIG00000016909 #30	ENSPCIG00000031021	NVL (ENSPCIG00000016904) #29
Wallaby	MODERN SPECIES	5117																ENSMEUG00000001000 #24
Tasmanian devil	MODERN SPECIES	3	CNST (ENSSHAG00000009416) #7	SCCPDH (ENSSHAG00000023977) #8	ENSSHAG00000007631 #10	ENSSHAG00000010887 #11	COQ8A (ENSSHAG00000010722) #12	PSEN2 (ENSSHAG00000010004) #13	ITPKB (ENSSHAG00000026815) #14	STUM (ENSSHAG00000025821) #15	PARP1 (ENSSHAG00000001991) #16	LIN9 (ENSSHAG00000008594) #17	MIXL1 (ENSSHAG00000008490) #18	ENSSHAG00000032275	ACBD3 (ENSSHAG00000007387) #19	ENSSHAG00000031306 ##20	SDE2 (ENSSHAG00000023306) #21	ENSSHAG00000014418 #24	ENSSHAG00000014345 #23	TMEM63A (ENSSHAG00000020965) #25	EPHX1 (ENSSHAG00000013636) #26	SRP9 (ENSSHAG00000013504) #37	ENAH (ENSSHAG00000029257) #36	LBR (ENSSHAG00000011098) #35	ENSSHAG00000024047	WDR26 (ENSSHAG00000007205) #31	CNIH4 (ENSSHAG00000027162) #30	NVL (ENSSHAG00000005391) #29	DEGS1 (ENSSHAG00000004372) #28	FBXO28 (ENSSHAG00000029324)	TP53BP2 (ENSSHAG00000015392)	CAPN2 (ENSSHAG00000027599)	ENSSHAG00000014684
Opossum	MODERN SPECIES	1	SCCPDH (ENSMODG00000006356) #8	ENSMODG00000024676 #9	AHCTF1 (ENSMODG00000006310) #10	CDC42BPA (ENSMODG00000006246) #11	COQ8A (ENSMODG00000006151) #12	PSEN2 (ENSMODG00000006114) #13	ITPKB (ENSMODG00000006095) #14	STUM (ENSMODG00000027423) #15	PARP1 (ENSMODG00000006076) #16	LIN9 (ENSMODG00000006033) #17	MIXL1 (ENSMODG00000005994) #18	ACBD3 (ENSMODG00000005990) #19	H3F3B (ENSMODG00000045947) ##20	SDE2 (ENSMODG00000005979) #21	ENSMODG00000050067	ENSMODG00000005964 #24	ENSMODG00000005956 #23	TMEM63A (ENSMODG00000005934) #25	EPHX1 (ENSMODG00000005882) #26	SRP9 (ENSMODG00000038570) #37	ENAH (ENSMODG00000005856) #36	ENSMODG00000005848 #35	ENSMODG00000043253	ENSMODG00000005822	ENSMODG00000005248	CNIH3 (ENSMODG00000038171) #32	ENSMODG00000040191	WDR26 (ENSMODG00000005227) #31	ENSMODG00000005180 #30	NVL (ENSMODG00000005163) #29	DEGS1 (ENSMODG00000005128)
Platypus	MODERN SPECIES	10	CAPN8 (ENSOANG00000001449)	CAPN2 (ENSOANG00000001450)	TP53BP2 (ENSOANG00000001453)	FBXO28 (ENSOANG00000001454)	DEGS1 (ENSOANG00000001455) #28	NVL (ENSOANG00000001457) #29	CNIH4 (ENSOANG00000043482) #30	WDR26 (ENSOANG00000037128) #31	ENSOANG00000050981 #32	ENSOANG00000001463	LBR (ENSOANG00000001469) #35	ENAH (ENSOANG00000001471) #36	SRP9 (ENSOANG00000050463) #37	EPHX1 (ENSOANG00000001473) #26	ENSOANG00000001474 #25	ENSOANG00000001480 #24	SDE2 (ENSOANG00000001481) #21	ENSOANG00000037953 #20	ENSOANG00000050350 #19	ENSOANG00000043340 #19	MIXL1 (ENSOANG00000001484) #18	LIN9 (ENSOANG00000001486) #17	PARP1 (ENSOANG00000001488) #16	ENSOANG00000050466 #15	ENSOANG00000001517 #14	PSEN2 (ENSOANG00000010238) #13	COQ8A (ENSOANG00000010237) #12	CDC42BPA (ENSOANG00000010240) #11	AHCTF1 (ENSOANG00000010242) #10	SCCPDH (ENSOANG00000010244) #8	CNST (ENSOANG00000010245) #7
Sauria	ANCESTRAL SPECIES	1	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00940000170165	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Lepidosauria	ANCESTRAL SPECIES		ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00940000170165	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000162640	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Episquamata	ANCESTRAL SPECIES		ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000162640	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000162640	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Elapidae	ANCESTRAL SPECIES		ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000160421	ENSGT00940000158182	ENSGT00960000189514
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000158182	ENSGT00960000189514	ENSGT00950000182836.a
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000158182	ENSGT00960000189514	ENSGT00950000182836.a
Eastern brown snake	MODERN SPECIES	5	CAPN2 (ENSPTXG00000012829)	TP53BP2 (ENSPTXG00000012826)	FBXO28 (ENSPTXG00000012824)	DEGS1 (ENSPTXG00000012823) #28	NVL (ENSPTXG00000012820) #29	CNIH4 (ENSPTXG00000012819) #30	WDR26 (ENSPTXG00000012818) #31	CNIH3 (ENSPTXG00000012817) #32	ENSPTXG00000012816	ENSPTXG00000012815	LBR (ENSPTXG00000012814) #35	ENAH (ENSPTXG00000012813) #36	SRP9 (ENSPTXG00000012812) #37	EPHX1 (ENSPTXG00000012811) #26	TMEM63A (ENSPTXG00000012810) #25	ENSPTXG00000012809 #24	SDE2 (ENSPTXG00000012808) #21	ENSPTXG00000012807 ##20	ACBD3 (ENSPTXG00000012806) #19	LIN9 (ENSPTXG00000012798) #17	PARP1 (ENSPTXG00000012779) #16	STUM (ENSPTXG00000012777) #15	ITPKB (ENSPTXG00000012775) #14	PSEN2 (ENSPTXG00000012773) #13	COQ8A (ENSPTXG00000012772) #12	CDC42BPA (ENSPTXG00000012771) #11	XDH (ENSPTXG00000012770)	ENSPTXG00000012769	GALNT14 (ENSPTXG00000012766)	ENSPTXG00000012763	LCLAT1 (ENSPTXG00000012762)
Mainland tiger snake	MODERN SPECIES	3	TP53BP2 (ENSNSUG00000009945)	FBXO28 (ENSNSUG00000009944)	DEGS1 (ENSNSUG00000009943) #28	NVL (ENSNSUG00000009942) #29	CNIH4 (ENSNSUG00000009941) #30	WDR26 (ENSNSUG00000009940) #31	CNIH3 (ENSNSUG00000009939) #32	ENSNSUG00000009938	ENSNSUG00000009937	LBR (ENSNSUG00000009936) #35	ENSNSUG00000009935	ENAH (ENSNSUG00000009934) #36	SRP9 (ENSNSUG00000009933) #37	EPHX1 (ENSNSUG00000009932) #26	TMEM63A (ENSNSUG00000009855) #25	ENSNSUG00000009854 #24	SDE2 (ENSNSUG00000009853) #21	ENSNSUG00000009852 ##20	ACBD3 (ENSNSUG00000009851) #19	LIN9 (ENSNSUG00000009850) #17	PARP1 (ENSNSUG00000009467) #16	STUM (ENSNSUG00000009466) #15	ITPKB (ENSNSUG00000009465) #14	PSEN2 (ENSNSUG00000009464) #13	COQ8A (ENSNSUG00000009463) #12	ENSNSUG00000009462	CDC42BPA (ENSNSUG00000009460) #11	XDH (ENSNSUG00000009459)	ENSNSUG00000009458	GALNT14 (ENSNSUG00000009455)	ENSNSUG00000009454
Blue-lipped sea krait	MODERN SPECIES	4314															TMEM63A (ENSLLTG00000014098) #25	ENSLLTG00000014089 #24
Indian cobra	MODERN SPECIES		CAPN8 (ENSNNAG00000016395)	CAPN2 (ENSNNAG00000016514)	TP53BP2 (ENSNNAG00000016530)	FBXO28 (ENSNNAG00000016574)	NVL (ENSNNAG00000016588) #29	ENSNNAG00000016608	CNIH4 (ENSNNAG00000016610) #30	WDR26 (ENSNNAG00000016619) #31	CNIH3 (ENSNNAG00000016652) #32	ENSNNAG00000000009	LBR (ENSNNAG00000000014) #35	ENAH (ENSNNAG00000000021) #36	SRP9 (ENSNNAG00000000026) #37	ENSNNAG00000000028	TMEM63A (ENSNNAG00000000031) #25	ENSNNAG00000000034 #24	SDE2 (ENSNNAG00000000037) #21	ENSNNAG00000000040 ##20	ACBD3 (ENSNNAG00000000043) #19	LIN9 (ENSNNAG00000000045) #17	PARP1 (ENSNNAG00000000049) #16	STUM (ENSNNAG00000000052) #15	ITPKB (ENSNNAG00000000056) #14	PSEN2 (ENSNNAG00000000059) #13	COQ8A (ENSNNAG00000000067) #12	CDC42BPA (ENSNNAG00000001082) #11	ENSNNAG00000015682	XDH (ENSNNAG00000015694)	CAPN14 (ENSNNAG00000015750)	GALNT14 (ENSNNAG00000015783)	LCLAT1 (ENSNNAG00000015804)
Lizard	MODERN SPECIES		NVL (ENSACAG00000005476) #29	CNIH4 (ENSACAG00000005510) #30	WDR26 (ENSACAG00000005514) #31	CNIH3 (ENSACAG00000037336) #32	ENSACAG00000031958	ENSACAG00000038832	ENSACAG00000005625	LBR (ENSACAG00000005649) #35	ENSACAG00000038070	ENAH (ENSACAG00000005736) #36	ENSACAG00000037803	SRP9 (ENSACAG00000005788) #37	ENSACAG00000043572	EPHX1 (ENSACAG00000005795) #26	TMEM63A (ENSACAG00000005883) #25	ENSACAG00000005997 #24	SDE2 (ENSACAG00000006012) #21	ENSACAG00000026224 ##20	ACBD3 (ENSACAG00000006052) #19	LIN9 (ENSACAG00000006122) #17	PARP1 (ENSACAG00000006189) #16	STUM (ENSACAG00000006377) #15	ITPKB (ENSACAG00000006393) #14	PSEN2 (ENSACAG00000006455) #13	COQ8A (ENSACAG00000006522) #12	CDC42BPA (ENSACAG00000006624) #11	XDH (ENSACAG00000006868)	ENSACAG00000041707	ehd3 (ENSACAG00000043712)	ENSACAG00000007149	ENSACAG00000041838
Laterata	ANCESTRAL SPECIES	4	ENSGT00940000154784.D.a.b.e	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.b ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000162640	ENSGT00940000159274.c.a	ENSGT00940000160421	ENSGT00940000158182
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000002992 #28	ENSPMRG00000002985 #28	ENSPMRG00000002976	NVL (ENSPMRG00000002952) #29	CNIH4 (ENSPMRG00000002935) #30	WDR26 (ENSPMRG00000002904) #31	CNIH3 (ENSPMRG00000002879) #32	ENSPMRG00000002859	ENSPMRG00000002834	ENSPMRG00000002825	LBR (ENSPMRG00000002811) #35	SRP9 (ENSPMRG00000002803) #37	ENAH (ENSPMRG00000002767) #36	EPHX1 (ENSPMRG00000002742) #26	TMEM63A (ENSPMRG00000002722) #25	ENSPMRG00000002710 #24	SDE2 (ENSPMRG00000002691) #21	ENSPMRG00000002676 ##20	ACBD3 (ENSPMRG00000002653) #19	ENSPMRG00000002641	LIN9 (ENSPMRG00000002605) #17	PARP1 (ENSPMRG00000002352) #16	STUM (ENSPMRG00000002290) #15	ENSPMRG00000002286	ITPKB (ENSPMRG00000002280) #14	PSEN2 (ENSPMRG00000002276) #13	COQ8A (ENSPMRG00000002258) #12	CDC42BPA (ENSPMRG00000002174) #11	XDH (ENSPMRG00000002140)	ENSPMRG00000002135	ENSPMRG00000002129
Argentine black and white tegu	MODERN SPECIES	7	CAPN2 (ENSSMRG00000000459)	TP53BP2 (ENSSMRG00000000543)	ENSSMRG00000000585	FBXO28 (ENSSMRG00000000640)	DEGS1 (ENSSMRG00000000647) #28	NVL (ENSSMRG00000000653) #29	CNIH4 (ENSSMRG00000000692) #30	WDR26 (ENSSMRG00000000713) #31	CNIH3 (ENSSMRG00000000764) #32	ENSSMRG00000000780	LBR (ENSSMRG00000000922) #35	ENAH (ENSSMRG00000000950) #36	SRP9 (ENSSMRG00000000983) #37	EPHX1 (ENSSMRG00000000993) #26	TMEM63A (ENSSMRG00000001043) #25	ENSSMRG00000001070 #24	SDE2 (ENSSMRG00000001076) #21	H3-3A (ENSSMRG00000001173) #20	ENSSMRG00000001178	ACBD3 (ENSSMRG00000001183) #19	LIN9 (ENSSMRG00000001191) #17	PARP1 (ENSSMRG00000001210) #16	ENSSMRG00000001231	STUM (ENSSMRG00000001238) #15	ITPKB (ENSSMRG00000001272) #14	PSEN2 (ENSSMRG00000001279) #13	COQ8A (ENSSMRG00000001316) #12	CDC42BPA (ENSSMRG00000001396) #11	XDH (ENSSMRG00000001429)	ENSSMRG00000001438	ENSSMRG00000001440
tuatara	MODERN SPECIES	1150														EPHX1 (ENSSPUG00000007688) #26	ENSSPUG00000007703 #25	ENSSPUG00000007732 #24	SDE2 (ENSSPUG00000007741) #21	ENSSPUG00000007754 #20	ACBD3 (ENSSPUG00000007760) #19	LIN9 (ENSSPUG00000007769) #17	PARP1 (ENSSPUG00000007790) #16
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00940000170165	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00940000170165	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.a #20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Aves	ANCESTRAL SPECIES	12	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00940000170165	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00940000170165	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000159274	ENSGT00940000160421
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00940000170165	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000159274	ENSGT00940000160421
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000160410	ENSGT00940000160090	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.a #20	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000159274
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000160410	ENSGT00940000160090	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.a #20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000159274	ENSGT00940000160421
Passeriformes_g	ANCESTRAL SPECIES	52			ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000159274	ENSGT00940000160421
Medium ground finch	MODERN SPECIES	137		KIF16B (ENSGFOG00000009148)	CAPN2 (ENSGFOG00000009111)	TP53BP2 (ENSGFOG00000009095)	FBXO28 (ENSGFOG00000009085)	DEGS1 (ENSGFOG00000009082) #28	NVL (ENSGFOG00000008086) #29	CNIH4 (ENSGFOG00000008026) #30	WDR26 (ENSGFOG00000007978) #31	CNIH3 (ENSGFOG00000007963) #32	LBR (ENSGFOG00000007940) #35	ENAH (ENSGFOG00000007895) #36	SRP9 (ENSGFOG00000007887) #37	EPHX1 (ENSGFOG00000007862) #26	TMEM63A (ENSGFOG00000007843) #25	ENSGFOG00000007831 #24	SDE2 (ENSGFOG00000007825) #21	ENSGFOG00000007821 #20	ACBD3 (ENSGFOG00000007812) #19	LIN9 (ENSGFOG00000007804) #17	PARP1 (ENSGFOG00000005482) #16	STUM (ENSGFOG00000005336) #15	ITPKB (ENSGFOG00000005295) #14	PSEN2 (ENSGFOG00000005275) #13	COQ8A (ENSGFOG00000005254) #12	CDC42BPA (ENSGFOG00000005198) #11	XDH (ENSGFOG00000005138)	EHD3 (ENSGFOG00000005125)	ENSGFOG00000005113	GALNT14 (ENSGFOG00000005014)	ENSGFOG00000004987
Passeroidea	ANCESTRAL SPECIES	52			ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000159274	ENSGT00940000160421
Zebra finch	MODERN SPECIES	23	EPAS1 (ENSTGUG00000003933)	PIGF (ENSTGUG00000028368)	CRIPT (ENSTGUG00000021464)	ENSTGUG00000024367	TP53BP2 (ENSTGUG00000003997)	FBXO28 (ENSTGUG00000004015)	DEGS1 (ENSTGUG00000021206) #28	NVL (ENSTGUG00000004033) #29	CNIH4 (ENSTGUG00000025113) #30	WDR26 (ENSTGUG00000004059) #31	CNIH3 (ENSTGUG00000004070) #32	LBR (ENSTGUG00000004083) #35	ENAH (ENSTGUG00000004097) #36	EPHX1 (ENSTGUG00000004133) #26	TMEM63A (ENSTGUG00000004155) #25	ENSTGUG00000004196 #24	SDE2 (ENSTGUG00000004203) #21	H3F3A (ENSTGUG00000004210) ##20	ACBD3 (ENSTGUG00000004214) #19	MIXL1 (ENSTGUG00000004229) #18	LIN9 (ENSTGUG00000004230) #17	PARP1 (ENSTGUG00000004260) #16	STUM (ENSTGUG00000019558) #15	ITPKB (ENSTGUG00000004318) #14	PSEN2 (ENSTGUG00000004332) #13	COQ8A (ENSTGUG00000004345) #12	CDC42BPA (ENSTGUG00000004365) #11	XDH (ENSTGUG00000004450)	ENSTGUG00000027533	EHD3 (ENSTGUG00000004572)	CAPN14 (ENSTGUG00000004597)
Common canary	MODERN SPECIES	23	KIF16B (ENSSCAG00000015062)	CAPN2 (ENSSCAG00000015110)	TP53BP2 (ENSSCAG00000015158)	FBXO28 (ENSSCAG00000015167)	DEGS1 (ENSSCAG00000015175) #28	NVL (ENSSCAG00000015178) #29	CNIH4 (ENSSCAG00000015185) #30	ENSSCAG00000015189	WDR26 (ENSSCAG00000015199) #31	CNIH3 (ENSSCAG00000015221) #32	LBR (ENSSCAG00000015229) #35	ENAH (ENSSCAG00000015236) #36	SRP9 (ENSSCAG00000015245) #37	EPHX1 (ENSSCAG00000015248) #26	TMEM63A (ENSSCAG00000015253) #25	ENSSCAG00000015254 #24	SDE2 (ENSSCAG00000015257) #21	ENSSCAG00000015261 ##20	ACBD3 (ENSSCAG00000015263) #19	LIN9 (ENSSCAG00000015268) #17	PARP1 (ENSSCAG00000015316) #16
Flycatcher	MODERN SPECIES	21	CAPN8 (ENSFALG00000011920)	CAPN2 (ENSFALG00000011873)	TP53BP2 (ENSFALG00000011838)	FBXO28 (ENSFALG00000026434)	ENSFALG00000024961	NVL (ENSFALG00000011798) #29	DEGS1 (ENSFALG00000011808) #28	WDR26 (ENSFALG00000011769) #31	CNIH3 (ENSFALG00000011756) #32	LBR (ENSFALG00000011738) #35	ENAH (ENSFALG00000011701) #36	ENSFALG00000024751	SRP9 (ENSFALG00000023050) #37	EPHX1 (ENSFALG00000011683) #26	TMEM63A (ENSFALG00000011672) #25	ENSFALG00000011659 #24	SDE2 (ENSFALG00000011644) #21	ENSFALG00000011637 #20	ACBD3 (ENSFALG00000011626) #19	LIN9 (ENSFALG00000011618) #17	PARP1 (ENSFALG00000011578) #16	STUM (ENSFALG00000024398) #15	ENSFALG00000023589	ITPKB (ENSFALG00000027989) #14	PSEN2 (ENSFALG00000011534) #13	COQ8A (ENSFALG00000011530) #12	CDC42BPA (ENSFALG00000011522) #11	XDH (ENSFALG00000011478)	ENSFALG00000025053	EHD3 (ENSFALG00000011448)	CAPN14 (ENSFALG00000011401)
Great tit	MODERN SPECIES	22	CAPN8 (ENSPMJG00000011885)	CAPN2 (ENSPMJG00000011884)	TP53BP2 (ENSPMJG00000011883)	FBXO28 (ENSPMJG00000011881)	DEGS1 (ENSPMJG00000011880) #28	NVL (ENSPMJG00000011879) #29	CNIH4 (ENSPMJG00000011878) #30	WDR26 (ENSPMJG00000011842) #31	CNIH3 (ENSPMJG00000011841) #32	LBR (ENSPMJG00000011840) #35	ENSPMJG00000011839	ENAH (ENSPMJG00000011838) #36	ENSPMJG00000011836	EPHX1 (ENSPMJG00000011835) #26	TMEM63A (ENSPMJG00000011834) #25	ENSPMJG00000011833 #24	SDE2 (ENSPMJG00000011831) #21	ENSPMJG00000011830 ##20	ACBD3 (ENSPMJG00000011829) #19	ENSPMJG00000011828 #18	LIN9 (ENSPMJG00000011827) #17	PARP1 (ENSPMJG00000011359) #16	STUM (ENSPMJG00000011358) #15	ITPKB (ENSPMJG00000011356) #14	PSEN2 (ENSPMJG00000011355) #13	COQ8A (ENSPMJG00000011352) #12	CDC42BPA (ENSPMJG00000011335) #11	XDH (ENSPMJG00000009005)	ENSPMJG00000008998	EHD3 (ENSPMJG00000008997)	CAPN14 (ENSPMJG00000008988)
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00940000170165	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000158182	ENSGT00940000160921
Kakapo	MODERN SPECIES	2	CAPN2 (ENSSHBG00005019972)	TP53BP2 (ENSSHBG00005019959)	FBXO28 (ENSSHBG00005019953)	DEGS1 (ENSSHBG00005019951) #28	NVL (ENSSHBG00005019949) #29	ENSSHBG00005019945	CNIH4 (ENSSHBG00005019944) #30	WDR26 (ENSSHBG00005019940) #31	CNIH3 (ENSSHBG00005019936) #32	ENSSHBG00005019932	LBR (ENSSHBG00005019928) #35	ENAH (ENSSHBG00005019923) #36	SRP9 (ENSSHBG00005019918) #37	EPHX1 (ENSSHBG00005019915) #26	TMEM63A (ENSSHBG00005019913) #25	ENSSHBG00005019911 #24	SDE2 (ENSSHBG00005019907) #21	ENSSHBG00005019904 ##20	ACBD3 (ENSSHBG00005019903) #19	MIXL1 (ENSSHBG00005019902) #18	LIN9 (ENSSHBG00005019901) #17	PARP1 (ENSSHBG00005019898) #16	ITPKB (ENSSHBG00005019893) #14	PSEN2 (ENSSHBG00005019888) #13	COQ8A (ENSSHBG00005019880) #12	CDC42BPA (ENSSHBG00005019873) #11	XDH (ENSSHBG00005013552)	EHD3 (ENSSHBG00005012372)	ENSSHBG00005012362	GALNT14 (ENSSHBG00005012346)	ENSSHBG00005012332
Golden eagle	MODERN SPECIES	4	SUSD4 (ENSACCG00020013772)	CAPN8 (ENSACCG00020013745)	CAPN2 (ENSACCG00020013713)	TP53BP2 (ENSACCG00020013658)	FBXO28 (ENSACCG00020013552)	DEGS1 (ENSACCG00020013532) #28	NVL (ENSACCG00020013513) #29	CNIH4 (ENSACCG00020013489) #30	WDR26 (ENSACCG00020013450) #31	CNIH3 (ENSACCG00020013406) #32	LBR (ENSACCG00020013359) #35	ENAH (ENSACCG00020013315) #36	SRP9 (ENSACCG00020013255) #37	EPHX1 (ENSACCG00020013246) #26	TMEM63A (ENSACCG00020013208) #25	ENSACCG00020013138 #24	SDE2 (ENSACCG00020013122) #21	ENSACCG00020013104 ##20	ACBD3 (ENSACCG00020013090) #19	ENSACCG00020013075	LIN9 (ENSACCG00020013062) #17	PARP1 (ENSACCG00020013013) #16	STUM (ENSACCG00020012947) #15	ITPKB (ENSACCG00020012928) #14	ENSACCG00020012909	PSEN2 (ENSACCG00020012879) #13	COQ8A (ENSACCG00020012847) #12	CDC42BPA (ENSACCG00020012470) #11	XDH (ENSACCG00020012219)	ENSACCG00020012159	EHD3 (ENSACCG00020012137)
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Anatidae	ANCESTRAL SPECIES	11	ENSGT00940000156560	ENSGT00730000111187.b	ENSGT00730000111187.a.b	ENSGT00940000156874	ENSGT00940000157082	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00940000157391	ENSGT00390000012703.a	ENSGT01030000234625.B.c	ENSGT00720000108846.a	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000158182	ENSGT00940000160921
Pink-footed goose	MODERN SPECIES	3	KCNK2 (ENSABRG00000015838)	ENSABRG00000015844	CENPF (ENSABRG00000015855)	PTPN14 (ENSABRG00000015879)	SMYD2 (ENSABRG00000015892)	PROX1 (ENSABRG00000015908)	RPS6KC1 (ENSABRG00000015926)	ANGEL2 (ENSABRG00000015955)	VASH2 (ENSABRG00000015959)	FLVCR1 (ENSABRG00000015963)	TATDN3 (ENSABRG00000015988)	NSL1 (ENSABRG00000015997)	BATF3 (ENSABRG00000016001)	ATF3 (ENSABRG00000016011)	ENSABRG00000016021 #25	ENSABRG00000016026 #24	SDE2 (ENSABRG00000016032) #21	ENSABRG00000016045 ##20	ACBD3 (ENSABRG00000016051) #19	LIN9 (ENSABRG00000016056) #17	PARP1 (ENSABRG00000016116) #16	STUM (ENSABRG00000016739) #15	ITPKB (ENSABRG00000016742) #14	PSEN2 (ENSABRG00000016747) #13	COQ8A (ENSABRG00000016752) #12	CDC42BPA (ENSABRG00000016763) #11	XDH (ENSABRG00000016799)	EHD3 (ENSABRG00000016823)	GALNT14 (ENSABRG00000016844)	ENSABRG00000016916	ENSABRG00000016923
Duck	MODERN SPECIES	21	ENSAPLG00000026344	ENSAPLG00000023638	CENPF (ENSAPLG00000009924)	PTPN14 (ENSAPLG00000010016)	SMYD2 (ENSAPLG00000010622)	PROX1 (ENSAPLG00000028813)	RPS6KC1 (ENSAPLG00000011098)	ANGEL2 (ENSAPLG00000011269)	VASH2 (ENSAPLG00000011439)	FLVCR1 (ENSAPLG00000011448)	TATDN3 (ENSAPLG00000011801)	NSL1 (ENSAPLG00000024285)	BATF3 (ENSAPLG00000025402)	ATF3 (ENSAPLG00000012304)	ENSAPLG00000012312 #25	ENSAPLG00000013195 #24	SDE2 (ENSAPLG00000013231) #21	ENSAPLG00000024151 ##20	ACBD3 (ENSAPLG00000013267) #19	MIXL1 (ENSAPLG00000025166) #18	LIN9 (ENSAPLG00000013627) #17	PARP1 (ENSAPLG00000014039) #16	STUM (ENSAPLG00000017920) #15	ITPKB (ENSAPLG00000014056) #14	PSEN2 (ENSAPLG00000014082) #13	COQ8A (ENSAPLG00000014501) #12	CDC42BPA (ENSAPLG00000012422) #11	XDH (ENSAPLG00000010946)	EHD3 (ENSAPLG00000010467)	GALNT14 (ENSAPLG00000009654)	CAPN13 (ENSAPLG00000009169)
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00530000063557.b	ENSGT00940000155483
Japanese quail	MODERN SPECIES	21	SUSD4 (ENSCJPG00005007148)	CAPN8 (ENSCJPG00005007128)	CAPN2 (ENSCJPG00005007127)	TP53BP2 (ENSCJPG00005007112)	FBXO28 (ENSCJPG00005007111)	DEGS1 (ENSCJPG00005007110) #28	NVL (ENSCJPG00005006952) #29	CNIH4 (ENSCJPG00005006951) #30	WDR26 (ENSCJPG00005006800) #31	CNIH3 (ENSCJPG00005006786) #32	LBR (ENSCJPG00005006681) #35	ENAH (ENSCJPG00005006656) #36	SRP9 (ENSCJPG00005006653) #37	EPHX1 (ENSCJPG00005006652) #26	TMEM63A (ENSCJPG00005006368) #25	ENSCJPG00005006343 #24	SDE2 (ENSCJPG00005006290) #21	ENSCJPG00005006285 ##20	ACBD3 (ENSCJPG00005006282) #19	ENSCJPG00005006281	LIN9 (ENSCJPG00005006227) #17	PARP1 (ENSCJPG00005006094) #16	STUM (ENSCJPG00005006093) #15	CRLS1 (ENSCJPG00005006070)	MCM8 (ENSCJPG00005006040)	TRMT6 (ENSCJPG00005005974)	CHGB (ENSCJPG00005005973)	SHLD1 (ENSCJPG00005005971)	GPCPD1 (ENSCJPG00005005678)	THUMPD2 (ENSCJPG00005005677)	ENSCJPG00005005676
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165801	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00530000063557.b	ENSGT00940000155483
Turkey	MODERN SPECIES	11	CAPN8 (ENSMGAG00000008330)	CAPN2 (ENSMGAG00000008632)	TP53BP2 (ENSMGAG00000008584)	FBXO28 (ENSMGAG00000008318)	DEGS1 (ENSMGAG00000008298) #28	NVL (ENSMGAG00000008258) #29	CNIH4 (ENSMGAG00000008252) #30	WDR26 (ENSMGAG00000008239) #31	CNIH3 (ENSMGAG00000008216) #32	LBR (ENSMGAG00000022445) #35	ENSMGAG00000008149	ENAH (ENSMGAG00000008071) #36	SRP9 (ENSMGAG00000008061) #37	EPHX1 (ENSMGAG00000008044) #26	TMEM63A (ENSMGAG00000007986) #25	ENSMGAG00000007976 #24	SDE2 (ENSMGAG00000007959) #21	ENSMGAG00000020931 ##20	ACBD3 (ENSMGAG00000007919) #19	LIN9 (ENSMGAG00000007858) #17	PARP1 (ENSMGAG00000007760) #16	STUM (ENSMGAG00000022723) #15	CRLS1 (ENSMGAG00000007742)	MCM8 (ENSMGAG00000007701)	TRMT6 (ENSMGAG00000007678)	CHGB (ENSMGAG00000007670)	ENSMGAG00000007668	ENSMGAG00000007629	ENSMGAG00000007605	ENSMGAG00000007494	ENSMGAG00000019993
Chicken	MODERN SPECIES	22	CAPN8 (ENSGALG00010016656)	CAPN2 (ENSGALG00010016626)	TP53BP2 (ENSGALG00010016604)	FBXO28 (ENSGALG00010016589)	DEGS1 (ENSGALG00010016573) #28	NVL (ENSGALG00010016565) #29	CNIH4 (ENSGALG00010016533) #30	WDR26 (ENSGALG00010016483) #31	CNIH3 (ENSGALG00010016477) #32	ENSGALG00010016467	LBR (ENSGALG00010016460) #35	SRP9 (ENSGALG00010016047) #37	ENAH (ENSGALG00010015989) #36	EPHX1 (ENSGALG00010015935) #26	TMEM63A (ENSGALG00010015917) #25	LEFTY1 (ENSGALG00010017549) #24	SDE2 (ENSGALG00010017544) #21	H3F3C (ENSGALG00010017538) ##20	MIXL1 (ENSGALG00010017532) #18	ACBD3 (ENSGALG00010017524) #19	LIN9 (ENSGALG00010017517) #17	PARP1 (ENSGALG00010017496) #16	STUM (ENSGALG00010017475) #15	CRLS1 (ENSGALG00010017471)	MCM8 (ENSGALG00010017462)	TRMT6 (ENSGALG00010017449)	CHGB (ENSGALG00010017418)	GPCPD1 (ENSGALG00010017352)	THUMPD2 (ENSGALG00010017335)	MAP4K3 (ENSGALG00010017313)	SOS1 (ENSGALG00010017280)
African ostrich	MODERN SPECIES	211	CAPN2 (ENSSCUG00000003204)	TP53BP2 (ENSSCUG00000003200)	FBXO28 (ENSSCUG00000003199)	DEGS1 (ENSSCUG00000003198) #28	NVL (ENSSCUG00000003175) #29	CNIH4 (ENSSCUG00000003156) #30	WDR26 (ENSSCUG00000003155) #31	CNIH3 (ENSSCUG00000003149) #32	ENSSCUG00000003148	LBR (ENSSCUG00000003144) #35	ENAH (ENSSCUG00000003136) #36	ENSSCUG00000003131	ENSSCUG00000003130	EPHX1 (ENSSCUG00000003127) #26	TMEM63A (ENSSCUG00000003125) #25	ENSSCUG00000003119 #24	SDE2 (ENSSCUG00000003112) #21	ENSSCUG00000003110 ##20	ACBD3 (ENSSCUG00000003107) #19	LIN9 (ENSSCUG00000003104) #17	PARP1 (ENSSCUG00000003097) #16	STUM (ENSSCUG00000003096) #15	PSEN2 (ENSSCUG00000003093) #13	COQ8A (ENSSCUG00000003091) #12	CDC42BPA (ENSSCUG00000003085) #11	ENSSCUG00000003078	XDH (ENSSCUG00000003075)	ENSSCUG00000003071	EHD3 (ENSSCUG00000003068)	CAPN14 (ENSSCUG00000003062)	GALNT14 (ENSSCUG00000003057)
Australian saltwater crocodile	MODERN SPECIES	60	NVL (ENSCPRG00005002926) #29	DEGS1 (ENSCPRG00005002958) #28	CNIH4 (ENSCPRG00005002963) #30	WDR26 (ENSCPRG00005002982) #31	CNIH3 (ENSCPRG00005003107) #32	ENSCPRG00005003133	ENSCPRG00005003164	ENSCPRG00005003169	LBR (ENSCPRG00005003175) #35	ENSCPRG00005003203	ENSCPRG00005003215 #36	ENSCPRG00005003221 #36	SRP9 (ENSCPRG00005003245) #37	EPHX1 (ENSCPRG00005003255) #26	TMEM63A (ENSCPRG00005003380) #25	ENSCPRG00005003387 #24	SDE2 (ENSCPRG00005003391) #21	ENSCPRG00005003407 #20	ACBD3 (ENSCPRG00005003412) #19	LIN9 (ENSCPRG00005003428) #17	PARP1 (ENSCPRG00005003441) #16	PSEN2 (ENSCPRG00005003466) #13	COQ8A (ENSCPRG00005003488) #12	CDC42BPA (ENSCPRG00005004049) #11	XDH (ENSCPRG00005008316)	EHD3 (ENSCPRG00005008338)	CAPN14 (ENSCPRG00005008377)	GALNT14 (ENSCPRG00005008412)	ENSCPRG00005008477	LCLAT1 (ENSCPRG00005008504)	ENSCPRG00005008514
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000154784.D.a.b	ENSGT00940000153463.b.f	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00940000171204	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000159274
Emydidae	ANCESTRAL SPECIES	9	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b.f	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT00940000158249	ENSGT01030000234517.G.g.a ##11	ENSGT00930000151054	ENSGT00530000063721.B	ENSGT00940000161002
Three-toed box turtle	MODERN SPECIES	186				DEGS1 (ENSTMTG00000015289) #28	NVL (ENSTMTG00000015273) #29	CNIH4 (ENSTMTG00000015260) #30	ENSTMTG00000015235 #31	CNIH3 (ENSTMTG00000015221) #32	ENSTMTG00000015215	ENSTMTG00000015003	LBR (ENSTMTG00000014956) #35	ENAH (ENSTMTG00000014893) #36	SRP9 (ENSTMTG00000014878) #37	EPHX1 (ENSTMTG00000014860) #26	TMEM63A (ENSTMTG00000014830) #25	ENSTMTG00000014798 #24	SDE2 (ENSTMTG00000014789) #21	ENSTMTG00000014776 ##20	ACBD3 (ENSTMTG00000014768) #19	MIXL1 (ENSTMTG00000014749) #18	LIN9 (ENSTMTG00000014586) #17	PARP1 (ENSTMTG00000014530) #16	ITPKB (ENSTMTG00000014515) #14	PSEN2 (ENSTMTG00000014490) #13	COQ8A (ENSTMTG00000014449) #12	CDC42BPA (ENSTMTG00000014403) #11	XDH (ENSTMTG00000014323)	ENSTMTG00000014311	EHD3 (ENSTMTG00000014300)	ENSTMTG00000014287	GALNT14 (ENSTMTG00000014235)
painted turtle	MODERN SPECIES	12	CAPN2 (ENSCPBG00000012405)	TP53BP2 (ENSCPBG00000012100)	FBXO28 (ENSCPBG00000012092)	NVL (ENSCPBG00000012087) #29	CNIH4 (ENSCPBG00000012084) #30	WDR26 (ENSCPBG00000012078) #31	CNIH3 (ENSCPBG00000012068) #32	ENSCPBG00000012064	ENSCPBG00000012038	ENSCPBG00000012036	LBR (ENSCPBG00000012020) #35	ENSCPBG00000012008 #36	SRP9 (ENSCPBG00000011999) #37	EPHX1 (ENSCPBG00000011996) #26	TMEM63A (ENSCPBG00000011988) #25	ENSCPBG00000011981 #24	SDE2 (ENSCPBG00000011980) #21	ENSCPBG00000011977 ##20	ACBD3 (ENSCPBG00000011972) #19	MIXL1 (ENSCPBG00000011969) #18	LIN9 (ENSCPBG00000011963) #17	PARP1 (ENSCPBG00000011958) #16	STUM (ENSCPBG00000011954) #15	ITPKB (ENSCPBG00000011950) #14	PSEN2 (ENSCPBG00000011947) #13	COQ8A (ENSCPBG00000011936) #12	CDC42BPA (ENSCPBG00000011916) #11	XDH (ENSCPBG00000011892)	EHD3 (ENSCPBG00000011884)	ENSCPBG00000011876	GALNT14 (ENSCPBG00000011857)
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b.f	ENSGT00390000002970	ENSGT00390000013448.a.a #28	ENSGT00570000079239 #29	ENSGT00950000182834.B #30	ENSGT00940000153634.b #31	ENSGT00950000182834.A.a.b.c #32	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000157376 #36	ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #24	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #15	ENSGT00950000183107.a.b.a	ENSGT00940000156764.a #14	ENSGT00940000157923 #13	ENSGT00940000156810 #12	ENSGT01030000234517.H.b #11	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00950000186173
Abingdon island giant tortoise	MODERN SPECIES	634	CCDC148 (ENSCABG00000012745)	ENSCABG00000012748	DAPL1 (ENSCABG00000012752)	MELK (ENSCABG00000012754)	PAX5 (ENSCABG00000012761)	ENSCABG00000012773	ENSCABG00000012777	GRHPR (ENSCABG00000012780)	ZBTB5 (ENSCABG00000012782)	POLR1E (ENSCABG00000012784)	FBXO10 (ENSCABG00000012785)	ENAH (ENSCABG00000012789) #36	SRP9 (ENSCABG00000012832) #37	EPHX1 (ENSCABG00000012837) #26	TMEM63A (ENSCABG00000012878) #25	ENSCABG00000013283 #24	SDE2 (ENSCABG00000013288) #21
Goode s thornscrub tortoise	MODERN SPECIES	17	DEGS1 (ENSGEVG00005015810) #28	ENSGEVG00005015801	NVL (ENSGEVG00005015719) #29	CNIH4 (ENSGEVG00005015701) #30	WDR26 (ENSGEVG00005015598) #31	CNIH3 (ENSGEVG00005015546) #32	ENSGEVG00005015495	ENSGEVG00005015462	ENSGEVG00005015408	ENSGEVG00005015386	LBR (ENSGEVG00005015360) #35	ENAH (ENSGEVG00005015322) #36	SRP9 (ENSGEVG00005015297) #37	EPHX1 (ENSGEVG00005015263) #26	TMEM63A (ENSGEVG00005015156) #25	ENSGEVG00005015097 #24	SDE2 (ENSGEVG00005015082) #21	ENSGEVG00005015026 ##20	ACBD3 (ENSGEVG00005015002) #19	MIXL1 (ENSGEVG00005014953) #18	LIN9 (ENSGEVG00005014867) #17	PARP1 (ENSGEVG00005014820) #16	STUM (ENSGEVG00005014790) #15	ENSGEVG00005014678	ITPKB (ENSGEVG00005014643) #14	PSEN2 (ENSGEVG00005014558) #13	COQ8A (ENSGEVG00005014517) #12	CDC42BPA (ENSGEVG00005014464) #11	ENSGEVG00005014287 #11	XDH (ENSGEVG00005014160)	EHD3 (ENSGEVG00005014115)
Chinese turtle	MODERN SPECIES	686										ENSPSIG00000011407	LBR (ENSPSIG00000013788) #35	ENAH (ENSPSIG00000014372) #36	SRP9 (ENSPSIG00000014842) #37	EPHX1 (ENSPSIG00000015003) #26	TMEM63A (ENSPSIG00000015072) #25	ENSPSIG00000016169 #24	SDE2 (ENSPSIG00000016286) #21	ENSPSIG00000016288	ENSPSIG00000016297 ##20	ACBD3 (ENSPSIG00000016300) #19	ENSPSIG00000016352	LIN9 (ENSPSIG00000016362) #17	PARP1 (ENSPSIG00000016374) #16	STUM (ENSPSIG00000017291) #15	ITPKB (ENSPSIG00000017341) #14	PSEN2 (ENSPSIG00000017347) #13	COQ8A (ENSPSIG00000017351) #12	CDC42BPA (ENSPSIG00000017372) #11	XDH (ENSPSIG00000007446)	EHD3 (ENSPSIG00000017757)	CAPN14 (ENSPSIG00000017963)
Anura	ANCESTRAL SPECIES	21	ENSGT00940000160421	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00390000017697.b	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT01030000234555.a.b	ENSGT00390000003188 #17	ENSGT00530000063651.a #19	ENSGT00390000007539.c	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #36	ENSGT00390000000417.a.a.b.a.b #35	ENSGT00940000165101	ENSGT00950000182834.A.a.b.c #32	ENSGT00940000153634.b #31	ENSGT00950000182834.B #30	ENSGT00570000079239 #29	ENSGT00390000013448.a.a #28	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090.a
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	1276																ENSLLEG00000020450 #24
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000012568	XDH (ENSLLEG00000012626)	CIAO2B (ENSLLEG00000013103)	CDC42BPA (ENSLLEG00000013288) #11	COQ8A (ENSLLEG00000015209) #12	ITPKB (ENSLLEG00000015339) #14	STUM (ENSLLEG00000015570) #15	PARP1 (ENSLLEG00000015662) #16	ENSLLEG00000015804	LIN9 (ENSLLEG00000015844) #17	ACBD3 (ENSLLEG00000016048) #19	ENSLLEG00000016183	ENSLLEG00000016221	ENSLLEG00000016356 ##20	SDE2 (ENSLLEG00000016419) #21	ENSLLEG00000016508 #24	TMEM63A (ENSLLEG00000016581) #25	EPHX1 (ENSLLEG00000017054) #26	SRP9 (ENSLLEG00000017161) #37	ENAH (ENSLLEG00000017268) #36	LBR (ENSLLEG00000017765) #35	ENSLLEG00000018068	CNIH3 (ENSLLEG00000019334) #32	WDR26 (ENSLLEG00000019495) #31	ENSLLEG00000019926 #30	ENSLLEG00000019991	NVL (ENSLLEG00000020025) #29	FBXO28 (ENSLLEG00000020481)	TP53BP2 (ENSLLEG00000020879)	CAPN2 (ENSLLEG00000021003)	CAPN8 (ENSLLEG00000021455)
Frog	MODERN SPECIES	5	cdc42bpa (ENSXETG00000022112) #11	coq8a (ENSXETG00000022587) #12	itpkb (ENSXETG00000022603) #14	stum (ENSXETG00000045792) #15	parp1 (ENSXETG00000022610) #16	ENSXETG00000036773	lin9 (ENSXETG00000022620) #17	ENSXETG00000048528	mix1 (ENSXETG00000025923)	bix1.2 (ENSXETG00000042078)	bix1.1 (ENSXETG00000022633)	acbd3 (ENSXETG00000022634) #19	ENSXETG00000022637	h3-3a (ENSXETG00000022641) ##20	sde2 (ENSXETG00000022643) #21	lefty (ENSXETG00000043657) #24	tmem63a (ENSXETG00000022650) #25	ENSXETG00000044567	ephx1 (ENSXETG00000022654) #26	ENSXETG00000041953	srp9 (ENSXETG00000040743) #37	enah (ENSXETG00000018550) #36	lbr (ENSXETG00000018551) #35	dnah14 (ENSXETG00000018553)	cnih3 (ENSXETG00000045361) #32	wdr26 (ENSXETG00000018563) #31	cnih4 (ENSXETG00000037711) #30	nvl (ENSXETG00000018569) #29	degs1 (ENSXETG00000018586) #28	fbxo28 (ENSXETG00000049150)	ENSXETG00000045761
Coelacanth	MODERN SPECIES	1472													SRP9 (ENSLACG00000007546) #37	EPHX1 (ENSLACG00000006130) #26	TMEM63A (ENSLACG00000004141) #25	lft2 (ENSLACG00000000877) #24