Eutheria	ANCESTRAL SPECIES		ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Glires	ANCESTRAL SPECIES		ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Rodentia	ANCESTRAL SPECIES		ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Rodentia_B	ANCESTRAL SPECIES	45	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26
Myomorpha	ANCESTRAL SPECIES	16	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26
Muroidea	ANCESTRAL SPECIES	9	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Muroidea_A	DUPLICATION
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37
Prairie vole	MODERN SPECIES	14	Cnst (ENSMOCG00000006613) #7	Sccpdh (ENSMOCG00000017380) #8	Kif28 (ENSMOCG00000022053) #9	Ahctf1 (ENSMOCG00000004774) #10	Cdc42bpa (ENSMOCG00000019771) #11	Coq8a (ENSMOCG00000022622) #12	Psen2 (ENSMOCG00000021854) #13	Itpkb (ENSMOCG00000002630) #14	Stum (ENSMOCG00000020677) #15	Parp1 (ENSMOCG00000014315) #16	Lin9 (ENSMOCG00000021496) #17	Mixl1 (ENSMOCG00000022650) #18	Acbd3 (ENSMOCG00000021409) #19	ENSMOCG00000017501 #20	Sde2 (ENSMOCG00000003863) #21	Lefty2 (ENSMOCG00000020511) #22	Pycr2 (ENSMOCG00000000522) #23	Lefty1 (ENSMOCG00000013803) #24	Tmem63a (ENSMOCG00000010850) #25	ENSMOCG00000002922 #26	9130409I23Rik (ENSMOCG00000021672) #27	Nvl (ENSMOCG00000017466) #28	Cnih4 (ENSMOCG00000014531) #29	Wdr26 (ENSMOCG00000018920) #30	Cnih3 (ENSMOCG00000011071) #31	ENSMOCG00000011930 #32	ENSMOCG00000009557 #33	Enah (ENSMOCG00000016095) #34	ENSMOCG00000004862 #35	ENSMOCG00000019142 #36	Srp9 (ENSMOCG00000012590) #37
Northern American deer mouse	MODERN SPECIES	2	Sccpdh (ENSPEMG00000017539) #8	Kif28 (ENSPEMG00000014020) #9	ENSPEMG00000016591	Ahctf1 (ENSPEMG00000000305) #10	Cdc42bpa (ENSPEMG00000016582) #11	Coq8a (ENSPEMG00000010057) #12	Psen2 (ENSPEMG00000006562) #13	Itpkb (ENSPEMG00000000832) #14	Stum (ENSPEMG00000000087) #15	Parp1 (ENSPEMG00000020230) #16	Lin9 (ENSPEMG00000020176) #17	Mixl1 (ENSPEMG00000020007) #18	Acbd3 (ENSPEMG00000019971) #19	ENSPEMG00000019940 ##20	Sde2 (ENSPEMG00000001047) #21	Lefty2 (ENSPEMG00000018991) #22	Pycr2 (ENSPEMG00000018727) #23	Lefty1 (ENSPEMG00000026696) #24	Tmem63a (ENSPEMG00000016310) #25	ENSPEMG00000024494 #26	ENSPEMG00000025705 #26	9130409I23Rik (ENSPEMG00000011902) #27	ENSPEMG00000025337 ##27	Nvl (ENSPEMG00000001236) #28	Cnih4 (ENSPEMG00000012374) #29	Wdr26 (ENSPEMG00000010249) #30	Cnih3 (ENSPEMG00000008307) #31	Ccdc121rt1 (ENSPEMG00000029360)	Dnah14 (ENSPEMG00000025670) #32	Lbr (ENSPEMG00000022439)	Enah (ENSPEMG00000022874) #34
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37
Golden Hamster	MODERN SPECIES	697	Sccpdh (ENSMAUG00000014050) #8	Kif28 (ENSMAUG00000011576) #9	Ahctf1 (ENSMAUG00000007505) #10	ENSMAUG00000018123	Cdc42bpa (ENSMAUG00000010864) #11	Coq8a (ENSMAUG00000016955) #12	Psen2 (ENSMAUG00000014629) #13	Itpkb (ENSMAUG00000013424) #14	Stum (ENSMAUG00000010054) #15	Parp1 (ENSMAUG00000008306) #16	Lin9 (ENSMAUG00000000458) #17	Mixl1 (ENSMAUG00000000244) #18	Acbd3 (ENSMAUG00000008514) #19	ENSMAUG00000019811 #20	Sde2 (ENSMAUG00000019326) #21	Lefty2 (ENSMAUG00000018742) #22	Pycr2 (ENSMAUG00000017705) #23	Lefty1 (ENSMAUG00000009066) #24	ENSMAUG00000007599	ENSMAUG00000003804 #27	Nvl (ENSMAUG00000015157) #28	Cnih4 (ENSMAUG00000012691) #29	Wdr26 (ENSMAUG00000014280) #30	Cnih3 (ENSMAUG00000012379) #31	Ccdc121rt1 (ENSMAUG00000010926)	ENSMAUG00000014176 #32	Lbr (ENSMAUG00000012993)	Enah (ENSMAUG00000017836) #34	Srp9 (ENSMAUG00000017552) #37	Degs1 (ENSMAUG00000015951) ##27	Fbxo28 (ENSMAUG00000017511)
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001016196 #8	ENSCGRG00001014096	Kif28 (ENSCGRG00001022967) #9	Ahctf1 (ENSCGRG00001015843) #10	Cdc42bpa (ENSCGRG00001019928) #11	Coq8a (ENSCGRG00001022055) #12	Psen2 (ENSCGRG00001018733) #13	Itpkb (ENSCGRG00001024584) #14	Stum (ENSCGRG00001022399) #15	Parp1 (ENSCGRG00001020559) #16	Lin9 (ENSCGRG00001014165) #17	Mixl1 (ENSCGRG00001012768) #18	Acbd3 (ENSCGRG00001005103) #19	ENSCGRG00001021129 ##20	Sde2 (ENSCGRG00001018567) #21	Lefty2 (ENSCGRG00001017440) #22	Pycr2 (ENSCGRG00001024961) #23	Lefty1 (ENSCGRG00001024886) #24	Tmem63a (ENSCGRG00001022346) #25	Ephx1 (ENSCGRG00001023454) #26	9130409I23Rik (ENSCGRG00001023435) #27	ENSCGRG00001016864 ##27	Nvl (ENSCGRG00001007917) #28	Cnih4 (ENSCGRG00001000385) #29	Wdr26 (ENSCGRG00001018374) #30	Cnih3 (ENSCGRG00001018492) #31	Ccdc121rt1 (ENSCGRG00001005549)	ENSCGRG00001009826 #32	Lbr (ENSCGRG00001022299)	Enah (ENSCGRG00001013627) #34	Srp9 (ENSCGRG00001008910) #37
Murinae	ANCESTRAL SPECIES	11	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37
Mus	ANCESTRAL SPECIES	5	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37
Mus_A	DUPLICATION
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00390000010056.y.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188.u #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34
spretus	MODERN SPECIES		Sccpdh (MGP_SPRETEiJ_G0015768) #8	Kif28 (MGP_SPRETEiJ_G0015769) #9	Ahctf1 (MGP_SPRETEiJ_G0015770) #10	MGP_SPRETEiJ_G0015771	Cdc42bpa (MGP_SPRETEiJ_G0015772) #11	Coq8a (MGP_SPRETEiJ_G0015773) #12	Psen2 (MGP_SPRETEiJ_G0015774) #13	Itpkb (MGP_SPRETEiJ_G0015775) #14	Stum (MGP_SPRETEiJ_G0015776) #15	Parp1 (MGP_SPRETEiJ_G0015777) #16	Lin9 (MGP_SPRETEiJ_G0015778) #17	Mixl1 (MGP_SPRETEiJ_G0015779) #18	Acbd3 (MGP_SPRETEiJ_G0015780) #19	MGP_SPRETEiJ_G0015781 ##20	Sde2 (MGP_SPRETEiJ_G0015782) #21	MGP_SPRETEiJ_G0015783 #22	MGP_SPRETEiJ_G0015784 #22	Pycr2 (MGP_SPRETEiJ_G0015785) #23	Tmem63a (MGP_SPRETEiJ_G0015786) #25	Ephx1 (MGP_SPRETEiJ_G0015787) #26	9130409I23Rik (MGP_SPRETEiJ_G0015788) #27	Nvl (MGP_SPRETEiJ_G0015789) #28	Cnih4 (MGP_SPRETEiJ_G0015790) #29	Wdr26 (MGP_SPRETEiJ_G0015791) #30	Cnih3 (MGP_SPRETEiJ_G0015792) #31	MGP_SPRETEiJ_G0015793	MGP_SPRETEiJ_G0015794 #32	Lbr (MGP_SPRETEiJ_G0015795)	Enah (MGP_SPRETEiJ_G0015796) #34	Srp9 (MGP_SPRETEiJ_G0015797) #37	Vmn1r1 (MGP_SPRETEiJ_G0015798)
Ryukyu mouse	MODERN SPECIES		Sccpdh (MGP_CAROLIEiJ_G0014969) #8	Kif28 (MGP_CAROLIEiJ_G0014970) #9	Ahctf1 (MGP_CAROLIEiJ_G0014971) #10	MGP_CAROLIEiJ_G0014972	Cdc42bpa (MGP_CAROLIEiJ_G0014973) #11	Coq8a (MGP_CAROLIEiJ_G0014974) #12	Psen2 (MGP_CAROLIEiJ_G0014975) #13	Itpkb (MGP_CAROLIEiJ_G0014976) #14	Stum (MGP_CAROLIEiJ_G0014977) #15	Parp1 (MGP_CAROLIEiJ_G0014978) #16	MGP_CAROLIEiJ_G0014979 #17	Mixl1 (MGP_CAROLIEiJ_G0014980) #18	Acbd3 (MGP_CAROLIEiJ_G0014981) #19	MGP_CAROLIEiJ_G0014982 ##20	Sde2 (MGP_CAROLIEiJ_G0014983) #21	MGP_CAROLIEiJ_G0014984 #22	MGP_CAROLIEiJ_G0014985 #22	Pycr2 (MGP_CAROLIEiJ_G0014986) #23	Tmem63a (MGP_CAROLIEiJ_G0014987) #25	Ephx1 (MGP_CAROLIEiJ_G0014988) #26	Nvl (MGP_CAROLIEiJ_G0014989) #28	Cnih4 (MGP_CAROLIEiJ_G0014990) #29	MGP_CAROLIEiJ_G0014991 #30	Cnih3 (MGP_CAROLIEiJ_G0014992) #31	Ccdc121rt1 (MGP_CAROLIEiJ_G0014993)	MGP_CAROLIEiJ_G0014994 #32	Lbr (MGP_CAROLIEiJ_G0014995)	Enah (MGP_CAROLIEiJ_G0014996) #34	Srp9 (MGP_CAROLIEiJ_G0014997) #37	Vmn1r1 (MGP_CAROLIEiJ_G0014998)	Degs1 (MGP_CAROLIEiJ_G0014999) ##27
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00390000010056.y.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188.u #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37
spretus	MODERN SPECIES		Kif28 (MGP_SPRETEiJ_G0015769) #9	Ahctf1 (MGP_SPRETEiJ_G0015770) #10	MGP_SPRETEiJ_G0015771	Cdc42bpa (MGP_SPRETEiJ_G0015772) #11	Coq8a (MGP_SPRETEiJ_G0015773) #12	Psen2 (MGP_SPRETEiJ_G0015774) #13	Itpkb (MGP_SPRETEiJ_G0015775) #14	Stum (MGP_SPRETEiJ_G0015776) #15	Parp1 (MGP_SPRETEiJ_G0015777) #16	Lin9 (MGP_SPRETEiJ_G0015778) #17	Mixl1 (MGP_SPRETEiJ_G0015779) #18	Acbd3 (MGP_SPRETEiJ_G0015780) #19	MGP_SPRETEiJ_G0015781 ##20	Sde2 (MGP_SPRETEiJ_G0015782) #21	MGP_SPRETEiJ_G0015783 #22	MGP_SPRETEiJ_G0015784 #22	Pycr2 (MGP_SPRETEiJ_G0015785) #23	Tmem63a (MGP_SPRETEiJ_G0015786) #25	Ephx1 (MGP_SPRETEiJ_G0015787) #26	9130409I23Rik (MGP_SPRETEiJ_G0015788) #27	Nvl (MGP_SPRETEiJ_G0015789) #28	Cnih4 (MGP_SPRETEiJ_G0015790) #29	Wdr26 (MGP_SPRETEiJ_G0015791) #30	Cnih3 (MGP_SPRETEiJ_G0015792) #31	MGP_SPRETEiJ_G0015793	MGP_SPRETEiJ_G0015794 #32	Lbr (MGP_SPRETEiJ_G0015795)	Enah (MGP_SPRETEiJ_G0015796) #34	Srp9 (MGP_SPRETEiJ_G0015797) #37	Vmn1r1 (MGP_SPRETEiJ_G0015798)	Degs1 (MGP_SPRETEiJ_G0015799) ##27
Ryukyu mouse	MODERN SPECIES		Kif28 (MGP_CAROLIEiJ_G0014970) #9	Ahctf1 (MGP_CAROLIEiJ_G0014971) #10	MGP_CAROLIEiJ_G0014972	Cdc42bpa (MGP_CAROLIEiJ_G0014973) #11	Coq8a (MGP_CAROLIEiJ_G0014974) #12	Psen2 (MGP_CAROLIEiJ_G0014975) #13	Itpkb (MGP_CAROLIEiJ_G0014976) #14	Stum (MGP_CAROLIEiJ_G0014977) #15	Parp1 (MGP_CAROLIEiJ_G0014978) #16	MGP_CAROLIEiJ_G0014979 #17	Mixl1 (MGP_CAROLIEiJ_G0014980) #18	Acbd3 (MGP_CAROLIEiJ_G0014981) #19	MGP_CAROLIEiJ_G0014982 ##20	Sde2 (MGP_CAROLIEiJ_G0014983) #21	MGP_CAROLIEiJ_G0014984 #22	MGP_CAROLIEiJ_G0014985 #22	Pycr2 (MGP_CAROLIEiJ_G0014986) #23	Tmem63a (MGP_CAROLIEiJ_G0014987) #25	Ephx1 (MGP_CAROLIEiJ_G0014988) #26	Nvl (MGP_CAROLIEiJ_G0014989) #28	Cnih4 (MGP_CAROLIEiJ_G0014990) #29	MGP_CAROLIEiJ_G0014991 #30	Cnih3 (MGP_CAROLIEiJ_G0014992) #31	Ccdc121rt1 (MGP_CAROLIEiJ_G0014993)	MGP_CAROLIEiJ_G0014994 #32	Lbr (MGP_CAROLIEiJ_G0014995)	Enah (MGP_CAROLIEiJ_G0014996) #34	Srp9 (MGP_CAROLIEiJ_G0014997) #37	Vmn1r1 (MGP_CAROLIEiJ_G0014998)	Degs1 (MGP_CAROLIEiJ_G0014999) ##27	Fbxo28 (MGP_CAROLIEiJ_G0015000)
Mus_A	ANCESTRAL SPECIES																	ENSGT00390000010056.y.b #22
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000018900 #10	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00390000010056.y.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37
Mouse	MODERN SPECIES		Cnst (ENSMUSG00000038949) #7	Sccpdh (ENSMUSG00000038936) #8	Kif28 (ENSMUSG00000087236) #9	Ahctf1 (ENSMUSG00000026491) #10	Cdc42bpa (ENSMUSG00000026490) #11	Coq8a (ENSMUSG00000026489) #12	Psen2 (ENSMUSG00000010609) #13	Itpkb (ENSMUSG00000038855) #14	Stum (ENSMUSG00000053963) #15	Parp1 (ENSMUSG00000026496) #16	Lin9 (ENSMUSG00000058729) #17	Mixl1 (ENSMUSG00000026497) #18	Acbd3 (ENSMUSG00000026499) #19	H3f3a (ENSMUSG00000060743) ##20	Sde2 (ENSMUSG00000038806) #21	Lefty2 (ENSMUSG00000066652) #22	Pycr2 (ENSMUSG00000026520) #23	Lefty1 (ENSMUSG00000038793) #24	Tmem63a (ENSMUSG00000026519) #25	Ephx1 (ENSMUSG00000038776) #26	9130409I23Rik (ENSMUSG00000038768) #27	Nvl (ENSMUSG00000026516) #28	Cnih4 (ENSMUSG00000062169) #29	Wdr26 (ENSMUSG00000038733) #30	Cnih3 (ENSMUSG00000026514) #31	Ccdc121rt1 (ENSMUSG00000050625)	Dnah14 (ENSMUSG00000047369) #32	Lbr (ENSMUSG00000004880)	Enah (ENSMUSG00000022995) #34	Srp9 (ENSMUSG00000026511) #37	Vmn1r1 (ENSMUSG00000091013)
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000010056.y.b #22
Steppe mouse	MODERN SPECIES	3304	ENSMSIG00000005652 #8	Kif28 (ENSMSIG00000005729) #9	Ahctf1 (ENSMSIG00000005983) #10	ENSMSIG00000006134	Cdc42bpa (ENSMSIG00000006204) #11	Coq8a (ENSMSIG00000007186) #12	Psen2 (ENSMSIG00000007254) #13	Itpkb (ENSMSIG00000007328) #14	Stum (ENSMSIG00000007366) #15	Parp1 (ENSMSIG00000007405) #16	ENSMSIG00000007488 #17	Mixl1 (ENSMSIG00000007539) #18	Acbd3 (ENSMSIG00000007560) #19	ENSMSIG00000007594 ##20	Sde2 (ENSMSIG00000007635) #21	Lefty2 (ENSMSIG00000007680) #22	Pycr2 (ENSMSIG00000007693) #23	Lefty1 (ENSMSIG00000007710) #24	Tmem63a (ENSMSIG00000007714) #25	Ephx1 (ENSMSIG00000007746) #26	ENSMSIG00000007797	ENSMSIG00000007826	9130409I23Rik (ENSMSIG00000007843) #27	ENSMSIG00000007861 ##27	Nvl (ENSMSIG00000007946) #28	ENSMSIG00000008071 #29	Wdr26 (ENSMSIG00000008106) #30	ENSMSIG00000008233	Cnih3 (ENSMSIG00000008251) #31	Ccdc121rt1 (ENSMSIG00000008319)	Dnah14 (ENSMSIG00000008331) #32
Shrew mouse	MODERN SPECIES	18	Sccpdh (MGP_PahariEiJ_G0028200) #8	Kif28 (MGP_PahariEiJ_G0028201) #9	MGP_PahariEiJ_G0028202 #10	MGP_PahariEiJ_G0028203	Cdc42bpa (MGP_PahariEiJ_G0028204) #11	Coq8a (MGP_PahariEiJ_G0028205) #12	Psen2 (MGP_PahariEiJ_G0028206) #13	Itpkb (MGP_PahariEiJ_G0028207) #14	Stum (MGP_PahariEiJ_G0028208) #15	MGP_PahariEiJ_G0028209 #16	Lin9 (MGP_PahariEiJ_G0028210) #17	Mixl1 (MGP_PahariEiJ_G0028211) #18	Acbd3 (MGP_PahariEiJ_G0028212) #19	MGP_PahariEiJ_G0028213 ##20	Sde2 (MGP_PahariEiJ_G0028214) #21	Lefty2 (MGP_PahariEiJ_G0028215) #22	MGP_PahariEiJ_G0028216 #24	Pycr2 (MGP_PahariEiJ_G0028217) #23	Tmem63a (MGP_PahariEiJ_G0028218) #25	MGP_PahariEiJ_G0028219 #26	9130409I23Rik (MGP_PahariEiJ_G0028220) #27	Nvl (MGP_PahariEiJ_G0028221) #28	Cnih4 (MGP_PahariEiJ_G0028222) #29	Wdr26 (MGP_PahariEiJ_G0028223) #30	Cnih3 (MGP_PahariEiJ_G0028224) #31	Ccdc121rt1 (MGP_PahariEiJ_G0028225)	MGP_PahariEiJ_G0028226 #32	Lbr (MGP_PahariEiJ_G0028227)	Enah (MGP_PahariEiJ_G0028228) #34	Srp9 (MGP_PahariEiJ_G0028229) #37	Vmn1r1 (MGP_PahariEiJ_G0028230)
Rat	MODERN SPECIES	4	Cnst (ENSRNOG00000002710) #7	Sccpdh (ENSRNOG00000066712) #8	Kif28p (ENSRNOG00000050602) #9	Ahctf1 (ENSRNOG00000023541) #10	Cdc42bpa (ENSRNOG00000002841) #11	Coq8a (ENSRNOG00000043201) #12	Psen2 (ENSRNOG00000002879) #13	Itpkb (ENSRNOG00000002969) #14	Stum (ENSRNOG00000071066) #15	Parp1 (ENSRNOG00000003084) #16	Lin9 (ENSRNOG00000023304) #17	Mixl1 (ENSRNOG00000003176) #18	Acbd3 (ENSRNOG00000003185) #19	H3f3b (ENSRNOG00000003220) ##20	Sde2 (ENSRNOG00000003247) #21	Lefty2 (ENSRNOG00000060325) #22	Pycr2 (ENSRNOG00000003267) #23	Lefty1 (ENSRNOG00000003263) #24	Tmem63a (ENSRNOG00000003310) #25	Ephx1 (ENSRNOG00000003515) #26	LOC498300 (ENSRNOG00000050163) #27	RGD1564463 (ENSRNOG00000003601) ##27	Nvl (ENSRNOG00000003629) #28	Cnih4 (ENSRNOG00000003717) #29	Wdr26 (ENSRNOG00000003723) #30	Cnih3 (ENSRNOG00000022724) #31	Ccdc121rt (ENSRNOG00000022717)	Dnah14 (ENSRNOG00000070092) #32	Lbr (ENSRNOG00000052574)	Enah (ENSRNOG00000031934) #34	Srp9 (ENSRNOG00000003211) #37
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##27
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##27
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##27
Chinese hamster chok1gshd	MODERN SPECIES	2	Kif28 (ENSCGRG00001022967) #9	Ahctf1 (ENSCGRG00001015843) #10	Cdc42bpa (ENSCGRG00001019928) #11	Coq8a (ENSCGRG00001022055) #12	Psen2 (ENSCGRG00001018733) #13	Itpkb (ENSCGRG00001024584) #14	Stum (ENSCGRG00001022399) #15	Parp1 (ENSCGRG00001020559) #16	Lin9 (ENSCGRG00001014165) #17	Mixl1 (ENSCGRG00001012768) #18	Acbd3 (ENSCGRG00001005103) #19	ENSCGRG00001021129 ##20	Sde2 (ENSCGRG00001018567) #21	Lefty2 (ENSCGRG00001017440) #22	Pycr2 (ENSCGRG00001024961) #23	Lefty1 (ENSCGRG00001024886) #24	Tmem63a (ENSCGRG00001022346) #25	Ephx1 (ENSCGRG00001023454) #26	9130409I23Rik (ENSCGRG00001023435) #27	ENSCGRG00001016864 ##27	Nvl (ENSCGRG00001007917) #28	Cnih4 (ENSCGRG00001000385) #29	Wdr26 (ENSCGRG00001018374) #30	Cnih3 (ENSCGRG00001018492) #31	Ccdc121rt1 (ENSCGRG00001005549)	ENSCGRG00001009826 #32	Lbr (ENSCGRG00001022299)	Enah (ENSCGRG00001013627) #34	Srp9 (ENSCGRG00001008910) #37	Vmn1r1 (ENSCGRG00001010250)	Degs1 (ENSCGRG00001002610) ##27
Golden Hamster	MODERN SPECIES	697	Ahctf1 (ENSMAUG00000007505) #10	ENSMAUG00000018123	Cdc42bpa (ENSMAUG00000010864) #11	Coq8a (ENSMAUG00000016955) #12	Psen2 (ENSMAUG00000014629) #13	Itpkb (ENSMAUG00000013424) #14	Stum (ENSMAUG00000010054) #15	Parp1 (ENSMAUG00000008306) #16	Lin9 (ENSMAUG00000000458) #17	Mixl1 (ENSMAUG00000000244) #18	Acbd3 (ENSMAUG00000008514) #19	ENSMAUG00000019811 #20	Sde2 (ENSMAUG00000019326) #21	Lefty2 (ENSMAUG00000018742) #22	Pycr2 (ENSMAUG00000017705) #23	Lefty1 (ENSMAUG00000009066) #24	ENSMAUG00000007599	ENSMAUG00000003804 #27	Nvl (ENSMAUG00000015157) #28	Cnih4 (ENSMAUG00000012691) #29	Wdr26 (ENSMAUG00000014280) #30	Cnih3 (ENSMAUG00000012379) #31	Ccdc121rt1 (ENSMAUG00000010926)	ENSMAUG00000014176 #32	Lbr (ENSMAUG00000012993)	Enah (ENSMAUG00000017836) #34	Srp9 (ENSMAUG00000017552) #37	Degs1 (ENSMAUG00000015951) ##27	Fbxo28 (ENSMAUG00000017511)	Trp53bp2 (ENSMAUG00000016823)	Capn2 (ENSMAUG00000012201)
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##27
Prairie vole	MODERN SPECIES	14	Kif28 (ENSMOCG00000022053) #9	Ahctf1 (ENSMOCG00000004774) #10	Cdc42bpa (ENSMOCG00000019771) #11	Coq8a (ENSMOCG00000022622) #12	Psen2 (ENSMOCG00000021854) #13	Itpkb (ENSMOCG00000002630) #14	Stum (ENSMOCG00000020677) #15	Parp1 (ENSMOCG00000014315) #16	Lin9 (ENSMOCG00000021496) #17	Mixl1 (ENSMOCG00000022650) #18	Acbd3 (ENSMOCG00000021409) #19	ENSMOCG00000017501 #20	Sde2 (ENSMOCG00000003863) #21	Lefty2 (ENSMOCG00000020511) #22	Pycr2 (ENSMOCG00000000522) #23	Lefty1 (ENSMOCG00000013803) #24	Tmem63a (ENSMOCG00000010850) #25	ENSMOCG00000002922 #26	9130409I23Rik (ENSMOCG00000021672) #27	Nvl (ENSMOCG00000017466) #28	Cnih4 (ENSMOCG00000014531) #29	Wdr26 (ENSMOCG00000018920) #30	Cnih3 (ENSMOCG00000011071) #31	ENSMOCG00000011930 #32	ENSMOCG00000009557 #33	Enah (ENSMOCG00000016095) #34	ENSMOCG00000004862 #35	ENSMOCG00000019142 #36	Srp9 (ENSMOCG00000012590) #37	Degs1 (ENSMOCG00000021480) ##27	Fbxo28 (ENSMOCG00000006258)
Northern American deer mouse	MODERN SPECIES	2	ENSPEMG00000016591	Ahctf1 (ENSPEMG00000000305) #10	Cdc42bpa (ENSPEMG00000016582) #11	Coq8a (ENSPEMG00000010057) #12	Psen2 (ENSPEMG00000006562) #13	Itpkb (ENSPEMG00000000832) #14	Stum (ENSPEMG00000000087) #15	Parp1 (ENSPEMG00000020230) #16	Lin9 (ENSPEMG00000020176) #17	Mixl1 (ENSPEMG00000020007) #18	Acbd3 (ENSPEMG00000019971) #19	ENSPEMG00000019940 ##20	Sde2 (ENSPEMG00000001047) #21	Lefty2 (ENSPEMG00000018991) #22	Pycr2 (ENSPEMG00000018727) #23	Lefty1 (ENSPEMG00000026696) #24	Tmem63a (ENSPEMG00000016310) #25	ENSPEMG00000024494 #26	ENSPEMG00000025705 #26	9130409I23Rik (ENSPEMG00000011902) #27	ENSPEMG00000025337 ##27	Nvl (ENSPEMG00000001236) #28	Cnih4 (ENSPEMG00000012374) #29	Wdr26 (ENSPEMG00000010249) #30	Cnih3 (ENSPEMG00000008307) #31	Ccdc121rt1 (ENSPEMG00000029360)	Dnah14 (ENSPEMG00000025670) #32	Lbr (ENSPEMG00000022439)	Enah (ENSPEMG00000022874) #34	Srp9 (ENSPEMG00000022774) #37	Vmn1r1 (ENSPEMG00000030686)
Murinae	ANCESTRAL SPECIES	11	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##27
Mus	ANCESTRAL SPECIES	5	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##27
Mus_A	ANCESTRAL SPECIES	5	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##27
Mus_B	ANCESTRAL SPECIES	7	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00390000010056.y.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##27
Mouse	MODERN SPECIES		Kif28 (ENSMUSG00000087236) #9	Ahctf1 (ENSMUSG00000026491) #10	Cdc42bpa (ENSMUSG00000026490) #11	Coq8a (ENSMUSG00000026489) #12	Psen2 (ENSMUSG00000010609) #13	Itpkb (ENSMUSG00000038855) #14	Stum (ENSMUSG00000053963) #15	Parp1 (ENSMUSG00000026496) #16	Lin9 (ENSMUSG00000058729) #17	Mixl1 (ENSMUSG00000026497) #18	Acbd3 (ENSMUSG00000026499) #19	H3f3a (ENSMUSG00000060743) ##20	Sde2 (ENSMUSG00000038806) #21	Lefty2 (ENSMUSG00000066652) #22	Pycr2 (ENSMUSG00000026520) #23	Lefty1 (ENSMUSG00000038793) #24	Tmem63a (ENSMUSG00000026519) #25	Ephx1 (ENSMUSG00000038776) #26	9130409I23Rik (ENSMUSG00000038768) #27	Nvl (ENSMUSG00000026516) #28	Cnih4 (ENSMUSG00000062169) #29	Wdr26 (ENSMUSG00000038733) #30	Cnih3 (ENSMUSG00000026514) #31	Ccdc121rt1 (ENSMUSG00000050625)	Dnah14 (ENSMUSG00000047369) #32	Lbr (ENSMUSG00000004880)	Enah (ENSMUSG00000022995) #34	Srp9 (ENSMUSG00000026511) #37	Vmn1r1 (ENSMUSG00000091013)	Degs1 (ENSMUSG00000038633) ##27	Fbxo28 (ENSMUSG00000047539)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00860000135936	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188.u #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #27	ENSGT00390000013448.a.a.j.b ##27	ENSGT00570000079239 #28	ENSGT00950000182834.B #29	ENSGT00940000153634.b #30	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #32	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376 #34	ENSGT00390000018505.b #37	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i ##27
Steppe mouse	MODERN SPECIES	3304	Ahctf1 (ENSMSIG00000005983) #10	ENSMSIG00000006134	Cdc42bpa (ENSMSIG00000006204) #11	Coq8a (ENSMSIG00000007186) #12	Psen2 (ENSMSIG00000007254) #13	Itpkb (ENSMSIG00000007328) #14	Stum (ENSMSIG00000007366) #15	Parp1 (ENSMSIG00000007405) #16	ENSMSIG00000007488 #17	Mixl1 (ENSMSIG00000007539) #18	Acbd3 (ENSMSIG00000007560) #19	ENSMSIG00000007594 ##20	Sde2 (ENSMSIG00000007635) #21	Lefty2 (ENSMSIG00000007680) #22	Pycr2 (ENSMSIG00000007693) #23	Lefty1 (ENSMSIG00000007710) #24	Tmem63a (ENSMSIG00000007714) #25	Ephx1 (ENSMSIG00000007746) #26	ENSMSIG00000007797	ENSMSIG00000007826	9130409I23Rik (ENSMSIG00000007843) #27	ENSMSIG00000007861 ##27	Nvl (ENSMSIG00000007946) #28	ENSMSIG00000008071 #29	Wdr26 (ENSMSIG00000008106) #30	ENSMSIG00000008233	Cnih3 (ENSMSIG00000008251) #31	Ccdc121rt1 (ENSMSIG00000008319)	Dnah14 (ENSMSIG00000008331) #32	Lbr (ENSMSIG00000008545)	Enah (ENSMSIG00000008601) #34
Shrew mouse	MODERN SPECIES	18	Kif28 (MGP_PahariEiJ_G0028201) #9	MGP_PahariEiJ_G0028202 #10	MGP_PahariEiJ_G0028203	Cdc42bpa (MGP_PahariEiJ_G0028204) #11	Coq8a (MGP_PahariEiJ_G0028205) #12	Psen2 (MGP_PahariEiJ_G0028206) #13	Itpkb (MGP_PahariEiJ_G0028207) #14	Stum (MGP_PahariEiJ_G0028208) #15	MGP_PahariEiJ_G0028209 #16	Lin9 (MGP_PahariEiJ_G0028210) #17	Mixl1 (MGP_PahariEiJ_G0028211) #18	Acbd3 (MGP_PahariEiJ_G0028212) #19	MGP_PahariEiJ_G0028213 ##20	Sde2 (MGP_PahariEiJ_G0028214) #21	Lefty2 (MGP_PahariEiJ_G0028215) #22	MGP_PahariEiJ_G0028216 #24	Pycr2 (MGP_PahariEiJ_G0028217) #23	Tmem63a (MGP_PahariEiJ_G0028218) #25	MGP_PahariEiJ_G0028219 #26	9130409I23Rik (MGP_PahariEiJ_G0028220) #27	Nvl (MGP_PahariEiJ_G0028221) #28	Cnih4 (MGP_PahariEiJ_G0028222) #29	Wdr26 (MGP_PahariEiJ_G0028223) #30	Cnih3 (MGP_PahariEiJ_G0028224) #31	Ccdc121rt1 (MGP_PahariEiJ_G0028225)	MGP_PahariEiJ_G0028226 #32	Lbr (MGP_PahariEiJ_G0028227)	Enah (MGP_PahariEiJ_G0028228) #34	Srp9 (MGP_PahariEiJ_G0028229) #37	Vmn1r1 (MGP_PahariEiJ_G0028230)	Degs1 (MGP_PahariEiJ_G0028231) ##27
Rat	MODERN SPECIES	4	Kif28p (ENSRNOG00000050602) #9	Ahctf1 (ENSRNOG00000023541) #10	Cdc42bpa (ENSRNOG00000002841) #11	Coq8a (ENSRNOG00000043201) #12	Psen2 (ENSRNOG00000002879) #13	Itpkb (ENSRNOG00000002969) #14	Stum (ENSRNOG00000071066) #15	Parp1 (ENSRNOG00000003084) #16	Lin9 (ENSRNOG00000023304) #17	Mixl1 (ENSRNOG00000003176) #18	Acbd3 (ENSRNOG00000003185) #19	H3f3b (ENSRNOG00000003220) ##20	Sde2 (ENSRNOG00000003247) #21	Lefty2 (ENSRNOG00000060325) #22	Pycr2 (ENSRNOG00000003267) #23	Lefty1 (ENSRNOG00000003263) #24	Tmem63a (ENSRNOG00000003310) #25	Ephx1 (ENSRNOG00000003515) #26	LOC498300 (ENSRNOG00000050163) #27	RGD1564463 (ENSRNOG00000003601) ##27	Nvl (ENSRNOG00000003629) #28	Cnih4 (ENSRNOG00000003717) #29	Wdr26 (ENSRNOG00000003723) #30	Cnih3 (ENSRNOG00000022724) #31	Ccdc121rt (ENSRNOG00000022717)	Dnah14 (ENSRNOG00000070092) #32	Lbr (ENSRNOG00000052574)	Enah (ENSRNOG00000031934) #34	Srp9 (ENSRNOG00000003211) #37	Degs1 (ENSRNOG00000003223) ##27	Fbxo28 (ENSRNOG00000000066)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1795		Cdc42bpa (ENSNGAG00000016580) #11	ENSNGAG00000015462	Coq8a (ENSNGAG00000022006) #12	Psen2 (ENSNGAG00000023668) #13	ENSNGAG00000004558	Itpkb (ENSNGAG00000006387) #14	Stum (ENSNGAG00000007799) #15	Parp1 (ENSNGAG00000003885) #16	Lin9 (ENSNGAG00000010078) #17	Mixl1 (ENSNGAG00000018300) #18	Acbd3 (ENSNGAG00000019285) #19	ENSNGAG00000008728 ##20	Sde2 (ENSNGAG00000022889) #21	ENSNGAG00000006685	ENSNGAG00000023800 #22	Pycr2 (ENSNGAG00000004193) #23	ENSNGAG00000007205 #22	Tmem63a (ENSNGAG00000010999) #25	ENSNGAG00000013471 #26	ENSNGAG00000007235 #26
Upper Galilee mountains blind mole rat	MODERN SPECIES	1795	ENSNGAG00000015462	Coq8a (ENSNGAG00000022006) #12	Psen2 (ENSNGAG00000023668) #13	ENSNGAG00000004558	Itpkb (ENSNGAG00000006387) #14	Stum (ENSNGAG00000007799) #15	Parp1 (ENSNGAG00000003885) #16	Lin9 (ENSNGAG00000010078) #17	Mixl1 (ENSNGAG00000018300) #18	Acbd3 (ENSNGAG00000019285) #19	ENSNGAG00000008728 ##20	Sde2 (ENSNGAG00000022889) #21	ENSNGAG00000006685	ENSNGAG00000023800 #22	Pycr2 (ENSNGAG00000004193) #23	ENSNGAG00000007205 #22	Tmem63a (ENSNGAG00000010999) #25	ENSNGAG00000013471 #26	ENSNGAG00000007235 #26
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	51	Cnst (ENSJJAG00000019924) #7	Sccpdh (ENSJJAG00000016528) #8	Kif28 (ENSJJAG00000009428) #9	Ahctf1 (ENSJJAG00000015815) #10	Cdc42bpa (ENSJJAG00000010408) #11	Coq8a (ENSJJAG00000001225) #12	Psen2 (ENSJJAG00000023570) #13	Itpkb (ENSJJAG00000010265) #14	Stum (ENSJJAG00000021582) #15	Parp1 (ENSJJAG00000023497) #16	Lin9 (ENSJJAG00000019828) #17	ENSJJAG00000018401 #18	Acbd3 (ENSJJAG00000014401) #19	ENSJJAG00000000867 ##20	Sde2 (ENSJJAG00000002996) #21	ENSJJAG00000011178 #22	Pycr2 (ENSJJAG00000014536) #23	ENSJJAG00000009374 #22	Tmem63a (ENSJJAG00000016345) #25	Ephx1 (ENSJJAG00000022906) #26	ENSJJAG00000022098	ENSJJAG00000000689 #27	Nvl (ENSJJAG00000003012) #28	ENSJJAG00000020517 #29	Wdr26 (ENSJJAG00000019959) #30	Cnih3 (ENSJJAG00000023601) #31	Dnah14 (ENSJJAG00000023244) #32	ENSJJAG00000007609 #33	ENSJJAG00000023116	Enah (ENSJJAG00000023846) #34	Srp9 (ENSJJAG00000016583) #37
Lesser Egyptian jerboa	MODERN SPECIES	51	Kif28 (ENSJJAG00000009428) #9	Ahctf1 (ENSJJAG00000015815) #10	Cdc42bpa (ENSJJAG00000010408) #11	Coq8a (ENSJJAG00000001225) #12	Psen2 (ENSJJAG00000023570) #13	Itpkb (ENSJJAG00000010265) #14	Stum (ENSJJAG00000021582) #15	Parp1 (ENSJJAG00000023497) #16	Lin9 (ENSJJAG00000019828) #17	ENSJJAG00000018401 #18	Acbd3 (ENSJJAG00000014401) #19	ENSJJAG00000000867 ##20	Sde2 (ENSJJAG00000002996) #21	ENSJJAG00000011178 #22	Pycr2 (ENSJJAG00000014536) #23	ENSJJAG00000009374 #22	Tmem63a (ENSJJAG00000016345) #25	Ephx1 (ENSJJAG00000022906) #26	ENSJJAG00000022098	ENSJJAG00000000689 #27	Nvl (ENSJJAG00000003012) #28	ENSJJAG00000020517 #29	Wdr26 (ENSJJAG00000019959) #30	Cnih3 (ENSJJAG00000023601) #31	Dnah14 (ENSJJAG00000023244) #32	ENSJJAG00000007609 #33	ENSJJAG00000023116	Enah (ENSJJAG00000023846) #34	Srp9 (ENSJJAG00000016583) #37	ENSJJAG00000015313 #27	Fbxo28 (ENSJJAG00000010586)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Hystricomorpha	ANCESTRAL SPECIES	29	ENSGT00940000159420.b	ENSGT00530000063876.a	ENSGT00530000063629.a	ENSGT00940000155793	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00390000002089.a.b	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c.f #23
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000000295	ENSHGLG00000000284	LYN (ENSHGLG00000002926)	ENSHGLG00000033196	MOS (ENSHGLG00000049453)	PLAG1 (ENSHGLG00000001672)	ENSHGLG00000035038	Parp1 (ENSHGLG00000003992) #16	LIN9 (ENSHGLG00000007823) #17	MIXL1 (ENSHGLG00000045669) #18	ENSHGLG00000041314	ACBD3 (ENSHGLG00000005012) #19	ENSHGLG00000048882	ENSHGLG00000035710 ##20	SDE2 (ENSHGLG00000003670) #21	ENSHGLG00000003338 #22	ENSHGLG00000036089	ENSHGLG00000039078 #23	ENSHGLG00000006919	INTS3 (ENSHGLG00000008354)	ENSHGLG00000041750	NPR1 (ENSHGLG00000009046)	ILF2 (ENSHGLG00000004134)	SNAPIN (ENSHGLG00000043471)	ENSHGLG00000042410	CHTOP (ENSHGLG00000010389)	S100A1 (ENSHGLG00000044434)	S100A14 (ENSHGLG00000008860)	ENSHGLG00000009571	S100A3 (ENSHGLG00000033057)	S100A4 (ENSHGLG00000016459)
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00940000159420.b	ENSGT00530000063876.a	ENSGT00530000063629.a	ENSGT00940000155793	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00390000002089.a.b	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c.f #23
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00940000159420.b	ENSGT00530000063876.a	ENSGT00530000063629.a	ENSGT00940000155793	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00390000002089.a.b	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c.f #23
Degu	MODERN SPECIES	172	HHAT (ENSODEG00000006027)	KCNH1 (ENSODEG00000006391)	RCOR3 (ENSODEG00000007158)	TRAF5 (ENSODEG00000010010)	RD3 (ENSODEG00000010438)	ITPKB (ENSODEG00000006556) #14	STUM (ENSODEG00000006865) #15	PARP1 (ENSODEG00000007424) #16	LIN9 (ENSODEG00000007495) #17	ENSODEG00000006883 #18	ACBD3 (ENSODEG00000007029) #19	ENSODEG00000007126	ENSODEG00000006347 ##20	ENSODEG00000006974	SDE2 (ENSODEG00000007391) #21	ENSODEG00000008453 #22	ENSODEG00000006478 #23	ENSODEG00000009205
Long-tailed chinchilla	MODERN SPECIES	196	ENSCLAG00000003749	HHAT (ENSCLAG00000003158)	ENSCLAG00000003578	KCNH1 (ENSCLAG00000003074)	RCOR3 (ENSCLAG00000002506)	TRAF5 (ENSCLAG00000005710)	ENSCLAG00000004308	ITPKB (ENSCLAG00000004247) #14	STUM (ENSCLAG00000003663) #15	PARP1 (ENSCLAG00000006637) #16	LIN9 (ENSCLAG00000005536) #17	ENSCLAG00000005251 #18	ACBD3 (ENSCLAG00000004643) #19	ENSCLAG00000003662 #20	SDE2 (ENSCLAG00000003280) #21	ENSCLAG00000003115 #22	PYCR2 (ENSCLAG00000002964) #23
Guinea pig	MODERN SPECIES	137	HTR7 (ENSCPOG00000007482)	RPP30 (ENSCPOG00000033174)	ANKRD1 (ENSCPOG00000002565)	PCGF5 (ENSCPOG00000013156)	HECTD2 (ENSCPOG00000008922)	PPP1R3C (ENSCPOG00000038237)	RD3 (ENSCPOG00000022572)	ITPKB (ENSCPOG00000013483) #14	STUM (ENSCPOG00000031019) #15	PARP1 (ENSCPOG00000015643) #16	LIN9 (ENSCPOG00000015642) #17	ACBD3 (ENSCPOG00000007184) #19	ENSCPOG00000039202 #20	ENSCPOG00000025231	SDE2 (ENSCPOG00000014756) #21	ENSCPOG00000014755 #22	PYCR2 (ENSCPOG00000005663) #23
Sciuridae	DUPLICATION
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Marmotini	ANCESTRAL SPECIES	21	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a.n #27	ENSGT00390000013448.a.a.m.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Marmotini_b	ANCESTRAL SPECIES	84	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a.n #27	ENSGT00390000013448.a.a.m.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Squirrel	MODERN SPECIES	126	AHCTF1 (ENSSTOG00000010795) #10	CDC42BPA (ENSSTOG00000015415) #11	COQ8A (ENSSTOG00000015395) #12	PSEN2 (ENSSTOG00000025166) #13	ENSSTOG00000033187	ITPKB (ENSSTOG00000019688) #14	STUM (ENSSTOG00000004805) #15	PARP1 (ENSSTOG00000016000) #16	LIN9 (ENSSTOG00000015992) #17	MIXL1 (ENSSTOG00000019392) #18	ACBD3 (ENSSTOG00000005981) #19	ENSSTOG00000026628 ##20	SDE2 (ENSSTOG00000012572) #21	ENSSTOG00000032692 #22	PYCR2 (ENSSTOG00000026618) #23	ENSSTOG00000024360 #22	TMEM63A (ENSSTOG00000028603) #25	EPHX1 (ENSSTOG00000026627) #26	SRP9 (ENSSTOG00000026827) #37	ENAH (ENSSTOG00000028215) #34	LBR (ENSSTOG00000005936)	DNAH14 (ENSSTOG00000021317) #32	CNIH3 (ENSSTOG00000028458) #31	WDR26 (ENSSTOG00000021796) #30	CNIH4 (ENSSTOG00000027396) #29	NVL (ENSSTOG00000014728) #28	ENSSTOG00000031649 #27	ENSSTOG00000021334	ENSSTOG00000025481 #27	FBXO28 (ENSSTOG00000009419)	TP53BP2 (ENSSTOG00000009398)
Arctic ground squirrel	MODERN SPECIES	325	ENSUPAG00010000500	AHCTF1 (ENSUPAG00010000506) #10	CDC42BPA (ENSUPAG00010000636) #11	COQ8A (ENSUPAG00010002144) #12	PSEN2 (ENSUPAG00010002205) #13	ITPKB (ENSUPAG00010002261) #14	STUM (ENSUPAG00010002286) #15	PARP1 (ENSUPAG00010002304) #16	LIN9 (ENSUPAG00010002320) #17	MIXL1 (ENSUPAG00010002339) #18	ACBD3 (ENSUPAG00010002347) #19	ENSUPAG00010002363 ##20	SDE2 (ENSUPAG00010002379) #21	ENSUPAG00010002390 #22	PYCR2 (ENSUPAG00010002405) #23	ENSUPAG00010002430 #22	TMEM63A (ENSUPAG00010002441) #25	EPHX1 (ENSUPAG00010002463) #26	SRP9 (ENSUPAG00010002484) #37	ENAH (ENSUPAG00010002499) #34	LBR (ENSUPAG00010002925)	ENSUPAG00010002965 #32	ENSUPAG00010002969 #32
Alpin marmot	MODERN SPECIES	12	CDC42BPA (ENSMMMG00000024041) #11	COQ8A (ENSMMMG00000024059) #12	PSEN2 (ENSMMMG00000024062) #13	ITPKB (ENSMMMG00000024065) #14	STUM (ENSMMMG00000024066) #15	ENSMMMG00000024067	ENSMMMG00000024068	PARP1 (ENSMMMG00000024069) #16	LIN9 (ENSMMMG00000024070) #17	MIXL1 (ENSMMMG00000024071) #18	ACBD3 (ENSMMMG00000024072) #19	ENSMMMG00000024073 ##20	SDE2 (ENSMMMG00000024074) #21	ENSMMMG00000024075 #22	PYCR2 (ENSMMMG00000024076) #23	ENSMMMG00000024077 #22	TMEM63A (ENSMMMG00000024078) #25	EPHX1 (ENSMMMG00000024079) #26	SRP9 (ENSMMMG00000024080) #37	ENAH (ENSMMMG00000024082) #34	LBR (ENSMMMG00000024148)	ENSMMMG00000024149 #32	ENSMMMG00000024150 #32	ENSMMMG00000024151	CNIH3 (ENSMMMG00000024152) #31	WDR26 (ENSMMMG00000024153) #30	CNIH4 (ENSMMMG00000024154) #29	NVL (ENSMMMG00000024155) #28	ENSMMMG00000024156	ENSMMMG00000024157	DEGS1 (ENSMMMG00000024159) #27
Eurasian red squirrel	MODERN SPECIES	3	ENSSVLG00005009948	COQ8A (ENSSVLG00005009997) #12	ENSSVLG00005010048	PSEN2 (ENSSVLG00005010078) #13	ITPKB (ENSSVLG00005010130) #14	STUM (ENSSVLG00005010162) #15	PARP1 (ENSSVLG00005010193) #16	ENSSVLG00005010227	ENSSVLG00005010350 #17	MIXL1 (ENSSVLG00005010553) #18	ACBD3 (ENSSVLG00005010595) #19	ENSSVLG00005010668 ##20	SDE2 (ENSSVLG00005010717) #21	ENSSVLG00005010786 #22	PYCR2 (ENSSVLG00005010901) #23	ENSSVLG00005010994 #22	TMEM63A (ENSSVLG00005011067) #25	EPHX1 (ENSSVLG00005011131) #26	SRP9 (ENSSVLG00005011178) #37	ENAH (ENSSVLG00005011282) #34	BOP1 (ENSSVLG00005011521)	ENSSVLG00005011588	ENSSVLG00005011663	ENSSVLG00005011720	ENSSVLG00005011796	LBR (ENSSVLG00005012135)	ENSSVLG00005012197 #32	ENSSVLG00005012320 #32	ENSSVLG00005012453	CNIH3 (ENSSVLG00005012576) #31	WDR26 (ENSSVLG00005012677) #30
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970
Marmotini	ANCESTRAL SPECIES	21	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a.n #27	ENSGT00390000013448.a.a.m.a #27
Marmotini_b	ANCESTRAL SPECIES	84	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a.n #27	ENSGT00390000013448.a.a.m.a #27	ENSGT00390000002970
Arctic ground squirrel	MODERN SPECIES	325			ENSUPAG00010000500	AHCTF1 (ENSUPAG00010000506) #10	CDC42BPA (ENSUPAG00010000636) #11	COQ8A (ENSUPAG00010002144) #12	PSEN2 (ENSUPAG00010002205) #13	ITPKB (ENSUPAG00010002261) #14	STUM (ENSUPAG00010002286) #15	PARP1 (ENSUPAG00010002304) #16	LIN9 (ENSUPAG00010002320) #17	MIXL1 (ENSUPAG00010002339) #18	ACBD3 (ENSUPAG00010002347) #19	ENSUPAG00010002363 ##20	SDE2 (ENSUPAG00010002379) #21	ENSUPAG00010002390 #22	PYCR2 (ENSUPAG00010002405) #23	ENSUPAG00010002430 #22	TMEM63A (ENSUPAG00010002441) #25	EPHX1 (ENSUPAG00010002463) #26	SRP9 (ENSUPAG00010002484) #37	ENAH (ENSUPAG00010002499) #34	LBR (ENSUPAG00010002925)	ENSUPAG00010002965 #32	ENSUPAG00010002969 #32
Squirrel	MODERN SPECIES	126	SCCPDH (ENSSTOG00000007502) #8	ENSSTOG00000021998 #9	AHCTF1 (ENSSTOG00000010795) #10	CDC42BPA (ENSSTOG00000015415) #11	COQ8A (ENSSTOG00000015395) #12	PSEN2 (ENSSTOG00000025166) #13	ENSSTOG00000033187	ITPKB (ENSSTOG00000019688) #14	STUM (ENSSTOG00000004805) #15	PARP1 (ENSSTOG00000016000) #16	LIN9 (ENSSTOG00000015992) #17	MIXL1 (ENSSTOG00000019392) #18	ACBD3 (ENSSTOG00000005981) #19	ENSSTOG00000026628 ##20	SDE2 (ENSSTOG00000012572) #21	ENSSTOG00000032692 #22	PYCR2 (ENSSTOG00000026618) #23	ENSSTOG00000024360 #22	TMEM63A (ENSSTOG00000028603) #25	EPHX1 (ENSSTOG00000026627) #26	SRP9 (ENSSTOG00000026827) #37	ENAH (ENSSTOG00000028215) #34	LBR (ENSSTOG00000005936)	DNAH14 (ENSSTOG00000021317) #32	CNIH3 (ENSSTOG00000028458) #31	WDR26 (ENSSTOG00000021796) #30	CNIH4 (ENSSTOG00000027396) #29	NVL (ENSSTOG00000014728) #28	ENSSTOG00000031649 #27	ENSSTOG00000021334	ENSSTOG00000025481 #27
Alpin marmot	MODERN SPECIES	12	ENSMMMG00000024027	AHCTF1 (ENSMMMG00000024028) #10	CDC42BPA (ENSMMMG00000024041) #11	COQ8A (ENSMMMG00000024059) #12	PSEN2 (ENSMMMG00000024062) #13	ITPKB (ENSMMMG00000024065) #14	STUM (ENSMMMG00000024066) #15	ENSMMMG00000024067	ENSMMMG00000024068	PARP1 (ENSMMMG00000024069) #16	LIN9 (ENSMMMG00000024070) #17	MIXL1 (ENSMMMG00000024071) #18	ACBD3 (ENSMMMG00000024072) #19	ENSMMMG00000024073 ##20	SDE2 (ENSMMMG00000024074) #21	ENSMMMG00000024075 #22	PYCR2 (ENSMMMG00000024076) #23	ENSMMMG00000024077 #22	TMEM63A (ENSMMMG00000024078) #25	EPHX1 (ENSMMMG00000024079) #26	SRP9 (ENSMMMG00000024080) #37	ENAH (ENSMMMG00000024082) #34	LBR (ENSMMMG00000024148)	ENSMMMG00000024149 #32	ENSMMMG00000024150 #32	ENSMMMG00000024151	CNIH3 (ENSMMMG00000024152) #31	WDR26 (ENSMMMG00000024153) #30	CNIH4 (ENSMMMG00000024154) #29	NVL (ENSMMMG00000024155) #28	ENSMMMG00000024156
Eurasian red squirrel	MODERN SPECIES	3	AHCTF1 (ENSSVLG00005009197) #10	CDC42BPA (ENSSVLG00005009702) #11	ENSSVLG00005009948	COQ8A (ENSSVLG00005009997) #12	ENSSVLG00005010048	PSEN2 (ENSSVLG00005010078) #13	ITPKB (ENSSVLG00005010130) #14	STUM (ENSSVLG00005010162) #15	PARP1 (ENSSVLG00005010193) #16	ENSSVLG00005010227	ENSSVLG00005010350 #17	MIXL1 (ENSSVLG00005010553) #18	ACBD3 (ENSSVLG00005010595) #19	ENSSVLG00005010668 ##20	SDE2 (ENSSVLG00005010717) #21	ENSSVLG00005010786 #22	PYCR2 (ENSSVLG00005010901) #23	ENSSVLG00005010994 #22	TMEM63A (ENSSVLG00005011067) #25	EPHX1 (ENSSVLG00005011131) #26	SRP9 (ENSSVLG00005011178) #37	ENAH (ENSSVLG00005011282) #34	BOP1 (ENSSVLG00005011521)	ENSSVLG00005011588	ENSSVLG00005011663	ENSSVLG00005011720	ENSSVLG00005011796	LBR (ENSSVLG00005012135)	ENSSVLG00005012197 #32	ENSSVLG00005012320 #32	ENSSVLG00005012453
Lagomorpha	ANCESTRAL SPECIES	199										ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	7	CAPN2 (ENSOCUG00000004612)	TP53BP2 (ENSOCUG00000004626)	FBXO28 (ENSOCUG00000004012)	ENSOCUG00000023942 #27	NVL (ENSOCUG00000005530) #28	CNIH4 (ENSOCUG00000000520) #29	WDR26 (ENSOCUG00000003294) #30	CNIH3 (ENSOCUG00000007694) #31	PARP1 (ENSOCUG00000017820) #16	LIN9 (ENSOCUG00000010028) #17	ENSOCUG00000022544	MIXL1 (ENSOCUG00000000103) #18	ACBD3 (ENSOCUG00000014391) #19	ENSOCUG00000024644 ##20	SDE2 (ENSOCUG00000001919) #21	ENSOCUG00000023218 #22	PYCR2 (ENSOCUG00000001915) #23	ENSOCUG00000021555 #22	TMEM63A (ENSOCUG00000001907) #25	EPHX1 (ENSOCUG00000011934) #26	SRP9 (ENSOCUG00000010791) #37	ENAH (ENSOCUG00000002299) #34	LBR (ENSOCUG00000000285)	ENSOCUG00000032314 #32	ENSOCUG00000038705 #32	ENSOCUG00000030155	ITPKB (ENSOCUG00000004970) #14	ENSOCUG00000029073 #15	ENSOCUG00000032837	ENSOCUG00000024367	ENSOCUG00000016466
Rabbit	MODERN SPECIES	7	MEIG1 (ENSOCUG00000010165)	ENSOCUG00000021476	ENSOCUG00000016466	ENSOCUG00000024367	ENSOCUG00000032837	ENSOCUG00000029073 #15	ITPKB (ENSOCUG00000004970) #14	ENSOCUG00000030155	ENSOCUG00000038705 #32	ENSOCUG00000032314 #32	LBR (ENSOCUG00000000285)	ENAH (ENSOCUG00000002299) #34	SRP9 (ENSOCUG00000010791) #37	EPHX1 (ENSOCUG00000011934) #26	TMEM63A (ENSOCUG00000001907) #25	ENSOCUG00000021555 #22	PYCR2 (ENSOCUG00000001915) #23	ENSOCUG00000023218 #22	SDE2 (ENSOCUG00000001919) #21	ENSOCUG00000024644 ##20	ACBD3 (ENSOCUG00000014391) #19	MIXL1 (ENSOCUG00000000103) #18	ENSOCUG00000022544	LIN9 (ENSOCUG00000010028) #17	PARP1 (ENSOCUG00000017820) #16	CNIH3 (ENSOCUG00000007694) #31	WDR26 (ENSOCUG00000003294) #30	CNIH4 (ENSOCUG00000000520) #29	NVL (ENSOCUG00000005530) #28	ENSOCUG00000023942 #27	FBXO28 (ENSOCUG00000004012)
Pika	MODERN SPECIES	1847																ENSOPRG00000012162 #22
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	8788																ENSTBEG00000008328 #22	PYCR2 (ENSTBEG00000008382) #23
Tree shrew	MODERN SPECIES	2144																ENSTBEG00000000002 #22
Primates	ANCESTRAL SPECIES	7	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Haplorrhini	ANCESTRAL SPECIES	7				ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Simiiformes	ANCESTRAL SPECIES	8				ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Platyrrhini	ANCESTRAL SPECIES	24	ENSGT00940000157464	ENSGT00910000146652	ENSGT00940000156644	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00390000001627.f	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Cebidae	DUPLICATION
Cebidae	ANCESTRAL SPECIES	23	ENSGT00390000003512	ENSGT00940000157464	ENSGT00940000156644	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00390000001627.f	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.k #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.l #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970.s.a	ENSGT00940000153463.b
Marmoset	MODERN SPECIES	10	RHOU (ENSCJAG00000046177)	ENSCJAG00000075541	CDC42BPA (ENSCJAG00000012980) #11	COQ8A (ENSCJAG00000012948) #12	PSEN2 (ENSCJAG00000012908) #13	ITPKB (ENSCJAG00000012894) #14	STUM (ENSCJAG00000012889) #15	PARP1 (ENSCJAG00000012831) #16	LIN9 (ENSCJAG00000012743) #17	ENSCJAG00000023047	MIXL1 (ENSCJAG00000012740) #18	ACBD3 (ENSCJAG00000038924) #19	ENSCJAG00000085157 ##20	SDE2 (ENSCJAG00000012685) #21	ENSCJAG00000083204	ENSCJAG00000074352 #22	PYCR2 (ENSCJAG00000035770) #23	ENSCJAG00000081248 #22	TMEM63A (ENSCJAG00000012604) #25	EPHX1 (ENSCJAG00000012582) #26	ENSCJAG00000074178	SRP9 (ENSCJAG00000040095) #37	ENSCJAG00000057654	ENAH (ENSCJAG00000012510) #34	LBR (ENSCJAG00000004629)	ASPM (ENSCJAG00000004680)	ZBTB41 (ENSCJAG00000004794)	CRB1 (ENSCJAG00000004825)	ENSCJAG00000076740	ENSCJAG00000082951	DENND1B (ENSCJAG00000004852)
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00390000003512	ENSGT00940000157464	ENSGT00940000156644	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00390000001627.f	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.k #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.l #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970.s.a	ENSGT00940000153463.b
Capuchin	MODERN SPECIES	42	RAB4A (ENSCCAG00000024652)	RHOU (ENSCCAG00000011687)	CDC42BPA (ENSCCAG00000037751) #11	COQ8A (ENSCCAG00000028650) #12	ENSCCAG00000037794	PSEN2 (ENSCCAG00000037653) #13	ENSCCAG00000035298	ITPKB (ENSCCAG00000017443) #14	STUM (ENSCCAG00000027365) #15	PARP1 (ENSCCAG00000033484) #16	LIN9 (ENSCCAG00000024893) #17	MIXL1 (ENSCCAG00000030603) #18	ACBD3 (ENSCCAG00000029038) #19	ENSCCAG00000021678 ##20	SDE2 (ENSCCAG00000033106) #21	ENSCCAG00000024966 #22	PYCR2 (ENSCCAG00000029202) #23	ENSCCAG00000030395 #22	TMEM63A (ENSCCAG00000022581) #25	EPHX1 (ENSCCAG00000024699) #26	SRP9 (ENSCCAG00000034464) #37	ENSCCAG00000025068	ENAH (ENSCCAG00000026712) #34	LBR (ENSCCAG00000018433)	ENSCCAG00000017821	DNAH14 (ENSCCAG00000023187) #32	ENSCCAG00000023109	CNIH3 (ENSCCAG00000018443) #31	WDR26 (ENSCCAG00000035904) #30	CNIH4 (ENSCCAG00000037449) #29	NVL (ENSCCAG00000037416) #28
Bolivian squirrel monkey	MODERN SPECIES	79				CDC42BPA (ENSSBOG00000035079) #11	COQ8A (ENSSBOG00000030114) #12	PSEN2 (ENSSBOG00000028763) #13	ITPKB (ENSSBOG00000029300) #14	STUM (ENSSBOG00000035359) #15	ENSSBOG00000010799	PARP1 (ENSSBOG00000010144) #16	LIN9 (ENSSBOG00000034500) #17	MIXL1 (ENSSBOG00000030522) #18	ACBD3 (ENSSBOG00000033136) #19	ENSSBOG00000034792 ##20	SDE2 (ENSSBOG00000023524) #21	ENSSBOG00000024940 #22	PYCR2 (ENSSBOG00000030067) #23	ENSSBOG00000025223 #22	TMEM63A (ENSSBOG00000034751) #25	EPHX1 (ENSSBOG00000019277) #26	SRP9 (ENSSBOG00000034573) #37	ENAH (ENSSBOG00000032372) #34	LBR (ENSSBOG00000032928)	DNAH14 (ENSSBOG00000027125) #32	ENSSBOG00000028635	ENSSBOG00000030414	ENSSBOG00000026740	CNIH3 (ENSSBOG00000028177) #31	WDR26 (ENSSBOG00000031377) #30	CNIH4 (ENSSBOG00000031048) #29	NVL (ENSSBOG00000034666) #28
Cebidae	ANCESTRAL SPECIES	23	ENSGT00940000156644	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00390000001627.f	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.k #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.l #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970.s.a	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Marmoset	MODERN SPECIES	10	CDC42BPA (ENSCJAG00000012980) #11	COQ8A (ENSCJAG00000012948) #12	PSEN2 (ENSCJAG00000012908) #13	ITPKB (ENSCJAG00000012894) #14	STUM (ENSCJAG00000012889) #15	PARP1 (ENSCJAG00000012831) #16	LIN9 (ENSCJAG00000012743) #17	ENSCJAG00000023047	MIXL1 (ENSCJAG00000012740) #18	ACBD3 (ENSCJAG00000038924) #19	ENSCJAG00000085157 ##20	SDE2 (ENSCJAG00000012685) #21	ENSCJAG00000083204	ENSCJAG00000074352 #22	PYCR2 (ENSCJAG00000035770) #23	ENSCJAG00000081248 #22	TMEM63A (ENSCJAG00000012604) #25	EPHX1 (ENSCJAG00000012582) #26	ENSCJAG00000074178	SRP9 (ENSCJAG00000040095) #37	ENSCJAG00000057654	ENAH (ENSCJAG00000012510) #34	LBR (ENSCJAG00000004629)	ASPM (ENSCJAG00000004680)	ZBTB41 (ENSCJAG00000004794)	CRB1 (ENSCJAG00000004825)	ENSCJAG00000076740	ENSCJAG00000082951	DENND1B (ENSCJAG00000004852)	ENSCJAG00000058085	C1orf53 (ENSCJAG00000004910)
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00940000156644	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00390000001627.f	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.k #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.l #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970.s.a	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Capuchin	MODERN SPECIES	42	CDC42BPA (ENSCCAG00000037751) #11	COQ8A (ENSCCAG00000028650) #12	ENSCCAG00000037794	PSEN2 (ENSCCAG00000037653) #13	ENSCCAG00000035298	ITPKB (ENSCCAG00000017443) #14	STUM (ENSCCAG00000027365) #15	PARP1 (ENSCCAG00000033484) #16	LIN9 (ENSCCAG00000024893) #17	MIXL1 (ENSCCAG00000030603) #18	ACBD3 (ENSCCAG00000029038) #19	ENSCCAG00000021678 ##20	SDE2 (ENSCCAG00000033106) #21	ENSCCAG00000024966 #22	PYCR2 (ENSCCAG00000029202) #23	ENSCCAG00000030395 #22	TMEM63A (ENSCCAG00000022581) #25	EPHX1 (ENSCCAG00000024699) #26	SRP9 (ENSCCAG00000034464) #37	ENSCCAG00000025068	ENAH (ENSCCAG00000026712) #34	LBR (ENSCCAG00000018433)	ENSCCAG00000017821	DNAH14 (ENSCCAG00000023187) #32	ENSCCAG00000023109	CNIH3 (ENSCCAG00000018443) #31	WDR26 (ENSCCAG00000035904) #30	CNIH4 (ENSCCAG00000037449) #29	NVL (ENSCCAG00000037416) #28	DEGS1 (ENSCCAG00000037018) #27	FBXO28 (ENSCCAG00000019791)
Bolivian squirrel monkey	MODERN SPECIES	79		CDC42BPA (ENSSBOG00000035079) #11	COQ8A (ENSSBOG00000030114) #12	PSEN2 (ENSSBOG00000028763) #13	ITPKB (ENSSBOG00000029300) #14	STUM (ENSSBOG00000035359) #15	ENSSBOG00000010799	PARP1 (ENSSBOG00000010144) #16	LIN9 (ENSSBOG00000034500) #17	MIXL1 (ENSSBOG00000030522) #18	ACBD3 (ENSSBOG00000033136) #19	ENSSBOG00000034792 ##20	SDE2 (ENSSBOG00000023524) #21	ENSSBOG00000024940 #22	PYCR2 (ENSSBOG00000030067) #23	ENSSBOG00000025223 #22	TMEM63A (ENSSBOG00000034751) #25	EPHX1 (ENSSBOG00000019277) #26	SRP9 (ENSSBOG00000034573) #37	ENAH (ENSSBOG00000032372) #34	LBR (ENSSBOG00000032928)	DNAH14 (ENSSBOG00000027125) #32	ENSSBOG00000028635	ENSSBOG00000030414	ENSSBOG00000026740	CNIH3 (ENSSBOG00000028177) #31	WDR26 (ENSSBOG00000031377) #30	CNIH4 (ENSSBOG00000031048) #29	NVL (ENSSBOG00000034666) #28	ENSSBOG00000019803	DEGS1 (ENSSBOG00000031189) #27
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	958	RHOU (ENSANAG00000023279)	ENSANAG00000028192	CDC42BPA (ENSANAG00000030280) #11	COQ8A (ENSANAG00000027573) #12	ENSANAG00000020132	PSEN2 (ENSANAG00000028143) #13	ITPKB (ENSANAG00000024650) #14	STUM (ENSANAG00000027408) #15	PARP1 (ENSANAG00000032699) #16	LIN9 (ENSANAG00000004587) #17	MIXL1 (ENSANAG00000029392) #18	ACBD3 (ENSANAG00000034586) #19	ENSANAG00000017653	ENSANAG00000022092 ##20	SDE2 (ENSANAG00000028299) #21	ENSANAG00000030058 #22	PYCR2 (ENSANAG00000027686) #23	ENSANAG00000029521 #22	TMEM63A (ENSANAG00000020164) #25	EPHX1 (ENSANAG00000027514) #26	SRP9 (ENSANAG00000022626) #37	ENSANAG00000027368 #34	LBR (ENSANAG00000021538)	ENSANAG00000037634 #32	ENSANAG00000029822	CNIH3 (ENSANAG00000035993) #31	ENSANAG00000017155	WDR26 (ENSANAG00000028722) #30	CNIH4 (ENSANAG00000022995) #29	ENSANAG00000015743	NVL (ENSANAG00000026330) #28
Mas night monkey	MODERN SPECIES	958	CDC42BPA (ENSANAG00000030280) #11	COQ8A (ENSANAG00000027573) #12	ENSANAG00000020132	PSEN2 (ENSANAG00000028143) #13	ITPKB (ENSANAG00000024650) #14	STUM (ENSANAG00000027408) #15	PARP1 (ENSANAG00000032699) #16	LIN9 (ENSANAG00000004587) #17	MIXL1 (ENSANAG00000029392) #18	ACBD3 (ENSANAG00000034586) #19	ENSANAG00000017653	ENSANAG00000022092 ##20	SDE2 (ENSANAG00000028299) #21	ENSANAG00000030058 #22	PYCR2 (ENSANAG00000027686) #23	ENSANAG00000029521 #22	TMEM63A (ENSANAG00000020164) #25	EPHX1 (ENSANAG00000027514) #26	SRP9 (ENSANAG00000022626) #37	ENSANAG00000027368 #34	LBR (ENSANAG00000021538)	ENSANAG00000037634 #32	ENSANAG00000029822	CNIH3 (ENSANAG00000035993) #31	ENSANAG00000017155	WDR26 (ENSANAG00000028722) #30	CNIH4 (ENSANAG00000022995) #29	ENSANAG00000015743	NVL (ENSANAG00000026330) #28	DEGS1 (ENSANAG00000027303) #27	FBXO28 (ENSANAG00000023391)
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00910000148176	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00390000018665.d
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT01090000260030.b	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00390000018665.d
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT01090000260030.b	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00390000018665.d
Macaca	ANCESTRAL SPECIES		ENSGT00940000159380	ENSGT01090000260030.b	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT01030000238203	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00940000161627.a.b.a.a.b	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00950000183105.B.a.a.b	ENSGT00530000063651.a #19	ENSGT01040000240755.A.b.b.a	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00950000183044.a.a.a.c.d #23	ENSGT00390000010056.p #22	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.a.a ##37	ENSGT00940000173703	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Rhesus	MODERN SPECIES		COQ8A (ENSMMUG00000008636) #12	PSEN2 (ENSMMUG00000018525) #13	ITPKB (ENSMMUG00000061649) #14	STUM (ENSMMUG00000008640) #15	PARP1 (ENSMMUG00000021820) #16	ENSMMUG00000050685	LIN9 (ENSMMUG00000016014) #17	MIXL1 (ENSMMUG00000005129) #18	ENSMMUG00000063956	ACBD3 (ENSMMUG00000019058) #19	ENSMMUG00000059492	H3-3A (ENSMMUG00000055584) ##20	SDE2 (ENSMMUG00000042699) #21	ENSMMUG00000056097	ENSMMUG00000011435 #22	PYCR2 (ENSMMUG00000011434) #22	TMEM63A (ENSMMUG00000005785) #25	EPHX1 (ENSMMUG00000005782) #26	SRP9 (ENSMMUG00000000134) ##37	ENAH (ENSMMUG00000002227) #34	LBR (ENSMMUG00000003472)	ENSMMUG00000051471	ENSMMUG00000060677	CNIH3 (ENSMMUG00000010335) #31	WDR26 (ENSMMUG00000012227) #30	CNIH4 (ENSMMUG00000063959) #29	NVL (ENSMMUG00000022510) #28	DEGS1 (ENSMMUG00000002400) #27	FBXO28 (ENSMMUG00000000676)	TP53BP2 (ENSMMUG00000011146)	CAPN2 (ENSMMUG00000011142)
Pig-tailed macaque	MODERN SPECIES	102	ENSMNEG00000033665	CDC42BPA (ENSMNEG00000034215) #11	COQ8A (ENSMNEG00000037185) #12	PSEN2 (ENSMNEG00000035904) #13	ITPKB (ENSMNEG00000032813) #14	STUM (ENSMNEG00000036609) #15	PARP1 (ENSMNEG00000034074) #16	LIN9 (ENSMNEG00000038790) #17	MIXL1 (ENSMNEG00000041606) #18	ENSMNEG00000041334	ACBD3 (ENSMNEG00000039320) #19	ENSMNEG00000029530 #20	SDE2 (ENSMNEG00000038615) #21	ENSMNEG00000042256 #22	PYCR2 (ENSMNEG00000033158) #23	ENSMNEG00000035765 #22	TMEM63A (ENSMNEG00000035779) #25	EPHX1 (ENSMNEG00000041552) #26	SRP9 (ENSMNEG00000043512) #37	ENAH (ENSMNEG00000033447) #34	LBR (ENSMNEG00000008692)	ENSMNEG00000043544 #32	ENSMNEG00000034880	CNIH3 (ENSMNEG00000035965) #31	WDR26 (ENSMNEG00000031309) #30	CNIH4 (ENSMNEG00000041190) #29	NVL (ENSMNEG00000042774) #28	DEGS1 (ENSMNEG00000028734) #27	FBXO28 (ENSMNEG00000034283)	ENSMNEG00000029327	ENSMNEG00000041225
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00390000010283.`b.a.a.d	ENSGT00390000018665.d
Cercopithecinae_d	ANCESTRAL SPECIES	67			ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00390000010283.`b.a.a.d	ENSGT00390000018665.d
Drill	MODERN SPECIES	1249					ITPKB (ENSMLEG00000039007) #14	STUM (ENSMLEG00000013254) #15	PARP1 (ENSMLEG00000012344) #16	LIN9 (ENSMLEG00000030007) #17	MIXL1 (ENSMLEG00000030344) #18	ENSMLEG00000042005	ACBD3 (ENSMLEG00000037935) #19	ENSMLEG00000041187 ##20	SDE2 (ENSMLEG00000043885) #21	ENSMLEG00000043622 #22	PYCR2 (ENSMLEG00000038897) #23	ENSMLEG00000030559 #22	TMEM63A (ENSMLEG00000029246) #25	EPHX1 (ENSMLEG00000036654) #26	SRP9 (ENSMLEG00000037309) #37	ENAH (ENSMLEG00000039485) #34	LBR (ENSMLEG00000030506)	ENSMLEG00000032583 #32
Sooty mangabey	MODERN SPECIES	513			CDC42BPA (ENSCATG00000036374) #11	COQ8A (ENSCATG00000005294) #12	PSEN2 (ENSCATG00000043861) #13	ITPKB (ENSCATG00000031660) #14	STUM (ENSCATG00000035656) #15	PARP1 (ENSCATG00000038981) #16	LIN9 (ENSCATG00000035907) #17	MIXL1 (ENSCATG00000042419) #18	ACBD3 (ENSCATG00000043891) #19	H3-3A (ENSCATG00000036239) ##20	SDE2 (ENSCATG00000035151) #21	ENSCATG00000038680 #22	PYCR2 (ENSCATG00000045074) #23	ENSCATG00000019235 #22	TMEM63A (ENSCATG00000039227) #25	EPHX1 (ENSCATG00000039564) #26	SRP9 (ENSCATG00000041813) #37	ENAH (ENSCATG00000006720) #34	LBR (ENSCATG00000031289)	DNAH14 (ENSCATG00000039957) #32	CNIH3 (ENSCATG00000042269) #31	ENSCATG00000030513	WDR26 (ENSCATG00000035046) #30	CNIH4 (ENSCATG00000043768) #29	NVL (ENSCATG00000040317) #28	DEGS1 (ENSCATG00000045366) #27	FBXO28 (ENSCATG00000035652)	ENSCATG00000014032	TP53BP2 (ENSCATG00000045377)
Olive baboon	MODERN SPECIES		CDC42BPA (ENSPANG00000007777) #11	COQ8A (ENSPANG00000005934) #12	PSEN2 (ENSPANG00000015683) #13	ENSPANG00000040643	ITPKB (ENSPANG00000014076) #14	ENSPANG00000042335 #15	ENSPANG00000041992	PARP1 (ENSPANG00000011198) #16	LIN9 (ENSPANG00000007503) #17	MIXL1 (ENSPANG00000007593) #18	ACBD3 (ENSPANG00000026078) #19	ENSPANG00000012291 ##20	SDE2 (ENSPANG00000017716) #21	ENSPANG00000031485 #22	PYCR2 (ENSPANG00000013395) #23	ENSPANG00000023521 #22	TMEM63A (ENSPANG00000009888) #25	EPHX1 (ENSPANG00000014172) #26	SRP9 (ENSPANG00000030164) #37	ENAH (ENSPANG00000007502) #34	LBR (ENSPANG00000006165)	ENSPANG00000043776	CNIH3 (ENSPANG00000016366) #31	ENSPANG00000030716	ENSPANG00000038502	WDR26 (ENSPANG00000012516) #30	CNIH4 (ENSPANG00000012290) #29	NVL (ENSPANG00000008349) #28	ENSPANG00000046984	DEGS1 (ENSPANG00000021909) #27	FBXO28 (ENSPANG00000035917)
Vervet Monkey	MODERN SPECIES	17	SNAP47 (ENSCSAG00000016423)	JMJD4 (ENSCSAG00000016420)	ENSCSAG00000016411	CDC42BPA (ENSCSAG00000016402) #11	COQ8A (ENSCSAG00000016382) #12	PSEN2 (ENSCSAG00000016372) #13	ITPKB (ENSCSAG00000016366) #14	STUM (ENSCSAG00000016358) #15	PARP1 (ENSCSAG00000016354) #16	LIN9 (ENSCSAG00000016351) #17	MIXL1 (ENSCSAG00000016345) #18	ACBD3 (ENSCSAG00000016340) #19	SDE2 (ENSCSAG00000016332) #21	ENSCSAG00000016323 #22	PYCR2 (ENSCSAG00000016314) #23	ENSCSAG00000016291 #22	TMEM63A (ENSCSAG00000016284) #25	EPHX1 (ENSCSAG00000016278) #26	ENAH (ENSCSAG00000016274) #34	LBR (ENSCSAG00000016260)	ENSCSAG00000016221	CNIH3 (ENSCSAG00000016214) #31	WDR26 (ENSCSAG00000016208) #30	CNIH4 (ENSCSAG00000016201) #29	NVL (ENSCSAG00000016196) #28	DEGS1 (ENSCSAG00000016186) #27	FBXO28 (ENSCSAG00000016176)	ENSCSAG00000000268	TP53BP2 (ENSCSAG00000016157)	CAPN2 (ENSCSAG00000016150)	CAPN8 (ENSCSAG00000016122)
Rhinopithecus	ANCESTRAL SPECIES	245	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058.o #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00950000183105.B.a.a.b.b	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT01100000263504.a.b.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505.a #32
Golden snub-nosed monkey	MODERN SPECIES	721	CDC42BPA (ENSRROG00000029107) #11	COQ8A (ENSRROG00000034012) #12	PSEN2 (ENSRROG00000031052) #13	ITPKB (ENSRROG00000033942) #14	STUM (ENSRROG00000009500) #15	ENSRROG00000020327	PARP1 (ENSRROG00000029280) #16	LIN9 (ENSRROG00000040247) #17	MIXL1 (ENSRROG00000043159) #18	ACBD3 (ENSRROG00000040704) #19	ENSRROG00000036089	ENSRROG00000033769 ##20	SDE2 (ENSRROG00000043133) #21	ENSRROG00000040509 #22	PYCR2 (ENSRROG00000044426) #23	ENSRROG00000038435 #22	ENSRROG00000029457 #25
Black snub-nosed monkey	MODERN SPECIES	851	TM4SF20 (ENSRBIG00000041706)	MFF (ENSRBIG00000042107)	COL4A3 (ENSRBIG00000038891)	COL4A4 (ENSRBIG00000030621)	RHBDD1 (ENSRBIG00000042928)	IRS1 (ENSRBIG00000030645)	NYAP2 (ENSRBIG00000031238)	LIN9 (ENSRBIG00000043619) #17	MIXL1 (ENSRBIG00000034282) #18	ENSRBIG00000038112	ACBD3 (ENSRBIG00000037536) #19	ENSRBIG00000012976 ##20	SDE2 (ENSRBIG00000042788) #21	ENSRBIG00000036291 #22	PYCR2 (ENSRBIG00000030213) #23	ENSRBIG00000043715 #22	TMEM63A (ENSRBIG00000042914) #25	EPHX1 (ENSRBIG00000033391) #26	SRP9 (ENSRBIG00000040480) #37	ENAH (ENSRBIG00000027849) #34	LBR (ENSRBIG00000043754)	ENSRBIG00000032234 #32
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT01090000260030.b	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00950000182843.b	ENSGT00940000159380	ENSGT01090000260030.b	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970
Cercopithecinae_d	ANCESTRAL SPECIES	67					ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970
Drill	MODERN SPECIES	1249							ITPKB (ENSMLEG00000039007) #14	STUM (ENSMLEG00000013254) #15	PARP1 (ENSMLEG00000012344) #16	LIN9 (ENSMLEG00000030007) #17	MIXL1 (ENSMLEG00000030344) #18	ENSMLEG00000042005	ACBD3 (ENSMLEG00000037935) #19	ENSMLEG00000041187 ##20	SDE2 (ENSMLEG00000043885) #21	ENSMLEG00000043622 #22	PYCR2 (ENSMLEG00000038897) #23	ENSMLEG00000030559 #22	TMEM63A (ENSMLEG00000029246) #25	EPHX1 (ENSMLEG00000036654) #26	SRP9 (ENSMLEG00000037309) #37	ENAH (ENSMLEG00000039485) #34	LBR (ENSMLEG00000030506)	ENSMLEG00000032583 #32
Sooty mangabey	MODERN SPECIES	513					CDC42BPA (ENSCATG00000036374) #11	COQ8A (ENSCATG00000005294) #12	PSEN2 (ENSCATG00000043861) #13	ITPKB (ENSCATG00000031660) #14	STUM (ENSCATG00000035656) #15	PARP1 (ENSCATG00000038981) #16	LIN9 (ENSCATG00000035907) #17	MIXL1 (ENSCATG00000042419) #18	ACBD3 (ENSCATG00000043891) #19	H3-3A (ENSCATG00000036239) ##20	SDE2 (ENSCATG00000035151) #21	ENSCATG00000038680 #22	PYCR2 (ENSCATG00000045074) #23	ENSCATG00000019235 #22	TMEM63A (ENSCATG00000039227) #25	EPHX1 (ENSCATG00000039564) #26	SRP9 (ENSCATG00000041813) #37	ENAH (ENSCATG00000006720) #34	LBR (ENSCATG00000031289)	DNAH14 (ENSCATG00000039957) #32	CNIH3 (ENSCATG00000042269) #31	ENSCATG00000030513	WDR26 (ENSCATG00000035046) #30	CNIH4 (ENSCATG00000043768) #29	NVL (ENSCATG00000040317) #28	DEGS1 (ENSCATG00000045366) #27	FBXO28 (ENSCATG00000035652)
Olive baboon	MODERN SPECIES		ENSPANG00000048924	ENSPANG00000048983	CDC42BPA (ENSPANG00000007777) #11	COQ8A (ENSPANG00000005934) #12	PSEN2 (ENSPANG00000015683) #13	ENSPANG00000040643	ITPKB (ENSPANG00000014076) #14	ENSPANG00000042335 #15	ENSPANG00000041992	PARP1 (ENSPANG00000011198) #16	LIN9 (ENSPANG00000007503) #17	MIXL1 (ENSPANG00000007593) #18	ACBD3 (ENSPANG00000026078) #19	ENSPANG00000012291 ##20	SDE2 (ENSPANG00000017716) #21	ENSPANG00000031485 #22	PYCR2 (ENSPANG00000013395) #23	ENSPANG00000023521 #22	TMEM63A (ENSPANG00000009888) #25	EPHX1 (ENSPANG00000014172) #26	SRP9 (ENSPANG00000030164) #37	ENAH (ENSPANG00000007502) #34	LBR (ENSPANG00000006165)	ENSPANG00000043776	CNIH3 (ENSPANG00000016366) #31	ENSPANG00000030716	ENSPANG00000038502	WDR26 (ENSPANG00000012516) #30	CNIH4 (ENSPANG00000012290) #29	NVL (ENSPANG00000008349) #28	ENSPANG00000046984
Macaca	ANCESTRAL SPECIES		ENSGT00910000148086	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT01090000260030.b	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT01030000238203	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970
Pig-tailed macaque	MODERN SPECIES	102	JMJD4 (ENSMNEG00000044011)	ZNF678 (ENSMNEG00000027914)	ENSMNEG00000033665	CDC42BPA (ENSMNEG00000034215) #11	COQ8A (ENSMNEG00000037185) #12	PSEN2 (ENSMNEG00000035904) #13	ITPKB (ENSMNEG00000032813) #14	STUM (ENSMNEG00000036609) #15	PARP1 (ENSMNEG00000034074) #16	LIN9 (ENSMNEG00000038790) #17	MIXL1 (ENSMNEG00000041606) #18	ENSMNEG00000041334	ACBD3 (ENSMNEG00000039320) #19	ENSMNEG00000029530 #20	SDE2 (ENSMNEG00000038615) #21	ENSMNEG00000042256 #22	PYCR2 (ENSMNEG00000033158) #23	ENSMNEG00000035765 #22	TMEM63A (ENSMNEG00000035779) #25	EPHX1 (ENSMNEG00000041552) #26	SRP9 (ENSMNEG00000043512) #37	ENAH (ENSMNEG00000033447) #34	LBR (ENSMNEG00000008692)	ENSMNEG00000043544 #32	ENSMNEG00000034880	CNIH3 (ENSMNEG00000035965) #31	WDR26 (ENSMNEG00000031309) #30	CNIH4 (ENSMNEG00000041190) #29	NVL (ENSMNEG00000042774) #28	DEGS1 (ENSMNEG00000028734) #27	FBXO28 (ENSMNEG00000034283)
Macaca_a	ANCESTRAL SPECIES		ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00940000161627.a.b.a.a.b	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00950000183105.B.a.a.b	ENSGT00530000063651.a #19	ENSGT01040000240755.A.b.b.a	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00950000183044.a.a.a.c.d #23	ENSGT00390000010056.p #22	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.a.a ##37	ENSGT00940000173703	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000054654	ENSMFAG00000053714	ITPKB (ENSMFAG00000035876) #14	STUM (ENSMFAG00000035398) #15	PARP1 (ENSMFAG00000002526) #16	ENSMFAG00000062286	LIN9 (ENSMFAG00000001110) #17	ENSMFAG00000027604	ENSMFAG00000051300	ACBD3 (ENSMFAG00000045670) #19	ENSMFAG00000048787	ENSMFAG00000050027	ENSMFAG00000045269 #20	SDE2 (ENSMFAG00000031291) #21	ENSMFAG00000031760 #23	ENSMFAG00000039504 #22	ENSMFAG00000051570	SRP9 (ENSMFAG00000002641) #37	ENAH (ENSMFAG00000019058) #34	LBR (ENSMFAG00000034066)	DNAH14 (ENSMFAG00000036618) #32	CNIH3 (ENSMFAG00000039040) #31	WDR26 (ENSMFAG00000036710) #30	CNIH4 (ENSMFAG00000003700) #29	NVL (ENSMFAG00000003164) #28	DEGS1 (ENSMFAG00000039054) #27	FBXO28 (ENSMFAG00000000604)	ENSMFAG00000003807	CAPN2 (ENSMFAG00000003091)	CAPN8 (ENSMFAG00000042857)	ENSMFAG00000039325
Rhesus	MODERN SPECIES		CDC42BPA (ENSMMUG00000008638) #11	COQ8A (ENSMMUG00000008636) #12	PSEN2 (ENSMMUG00000018525) #13	ITPKB (ENSMMUG00000061649) #14	STUM (ENSMMUG00000008640) #15	PARP1 (ENSMMUG00000021820) #16	ENSMMUG00000050685	LIN9 (ENSMMUG00000016014) #17	MIXL1 (ENSMMUG00000005129) #18	ENSMMUG00000063956	ACBD3 (ENSMMUG00000019058) #19	ENSMMUG00000059492	H3-3A (ENSMMUG00000055584) ##20	SDE2 (ENSMMUG00000042699) #21	ENSMMUG00000056097	ENSMMUG00000011435 #22	PYCR2 (ENSMMUG00000011434) #22	TMEM63A (ENSMMUG00000005785) #25	EPHX1 (ENSMMUG00000005782) #26	SRP9 (ENSMMUG00000000134) ##37	ENAH (ENSMMUG00000002227) #34	LBR (ENSMMUG00000003472)	ENSMMUG00000051471	ENSMMUG00000060677	CNIH3 (ENSMMUG00000010335) #31	WDR26 (ENSMMUG00000012227) #30	CNIH4 (ENSMMUG00000063959) #29	NVL (ENSMMUG00000022510) #28	DEGS1 (ENSMMUG00000002400) #27	FBXO28 (ENSMMUG00000000676)	TP53BP2 (ENSMMUG00000011146)
Vervet Monkey	MODERN SPECIES	17	WNT9A (ENSCSAG00000016440)	PRSS38 (ENSCSAG00000016434)	SNAP47 (ENSCSAG00000016423)	JMJD4 (ENSCSAG00000016420)	ENSCSAG00000016411	CDC42BPA (ENSCSAG00000016402) #11	COQ8A (ENSCSAG00000016382) #12	PSEN2 (ENSCSAG00000016372) #13	ITPKB (ENSCSAG00000016366) #14	STUM (ENSCSAG00000016358) #15	PARP1 (ENSCSAG00000016354) #16	LIN9 (ENSCSAG00000016351) #17	MIXL1 (ENSCSAG00000016345) #18	ACBD3 (ENSCSAG00000016340) #19	SDE2 (ENSCSAG00000016332) #21	ENSCSAG00000016323 #22	PYCR2 (ENSCSAG00000016314) #23	ENSCSAG00000016291 #22	TMEM63A (ENSCSAG00000016284) #25	EPHX1 (ENSCSAG00000016278) #26	ENAH (ENSCSAG00000016274) #34	LBR (ENSCSAG00000016260)	ENSCSAG00000016221	CNIH3 (ENSCSAG00000016214) #31	WDR26 (ENSCSAG00000016208) #30	CNIH4 (ENSCSAG00000016201) #29	NVL (ENSCSAG00000016196) #28	DEGS1 (ENSCSAG00000016186) #27	FBXO28 (ENSCSAG00000016176)	ENSCSAG00000000268	TP53BP2 (ENSCSAG00000016157)
Rhinopithecus	ANCESTRAL SPECIES	245		ENSGT00910000148176	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058.o #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00950000183105.B.a.a.b.b	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT01100000263504.a.b.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505.a #32
Golden snub-nosed monkey	MODERN SPECIES	721		ENSRROG00000021333	CDC42BPA (ENSRROG00000029107) #11	COQ8A (ENSRROG00000034012) #12	PSEN2 (ENSRROG00000031052) #13	ITPKB (ENSRROG00000033942) #14	STUM (ENSRROG00000009500) #15	ENSRROG00000020327	PARP1 (ENSRROG00000029280) #16	LIN9 (ENSRROG00000040247) #17	MIXL1 (ENSRROG00000043159) #18	ACBD3 (ENSRROG00000040704) #19	ENSRROG00000036089	ENSRROG00000033769 ##20	SDE2 (ENSRROG00000043133) #21	ENSRROG00000040509 #22	PYCR2 (ENSRROG00000044426) #23	ENSRROG00000038435 #22	ENSRROG00000029457 #25
Black snub-nosed monkey	MODERN SPECIES	851	ENSRBIG00000035997	AGFG1 (ENSRBIG00000033462)	TM4SF20 (ENSRBIG00000041706)	MFF (ENSRBIG00000042107)	COL4A3 (ENSRBIG00000038891)	COL4A4 (ENSRBIG00000030621)	RHBDD1 (ENSRBIG00000042928)	IRS1 (ENSRBIG00000030645)	NYAP2 (ENSRBIG00000031238)	LIN9 (ENSRBIG00000043619) #17	MIXL1 (ENSRBIG00000034282) #18	ENSRBIG00000038112	ACBD3 (ENSRBIG00000037536) #19	ENSRBIG00000012976 ##20	SDE2 (ENSRBIG00000042788) #21	ENSRBIG00000036291 #22	PYCR2 (ENSRBIG00000030213) #23	ENSRBIG00000043715 #22	TMEM63A (ENSRBIG00000042914) #25	EPHX1 (ENSRBIG00000033391) #26	SRP9 (ENSRBIG00000040480) #37	ENAH (ENSRBIG00000027849) #34	LBR (ENSRBIG00000043754)	ENSRBIG00000032234 #32
Hominoidea	DUPLICATION
Hominoidea	DUPLICATION
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000159380	ENSGT00910000147389	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000159380	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00910000147389	ENSGT00940000159380	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000003465.b.b.o.b
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00910000147389	ENSGT00940000159380	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000003465.b.b.o.b	ENSGT00390000002970.q
Pan	ANCESTRAL SPECIES		ENSGT00910000147389	ENSGT00940000159380	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000003465.b.b.o.b	ENSGT00390000002970.q
Bonobo	MODERN SPECIES		JMJD4 (ENSPPAG00000041921)	ENSPPAG00000042694	ENSPPAG00000042857	CDC42BPA (ENSPPAG00000030700) #11	COQ8A (ENSPPAG00000038783) #12	PSEN2 (ENSPPAG00000029453) #13	ITPKB (ENSPPAG00000034181) #14	ENSPPAG00000026314 #15	ENSPPAG00000035608	PARP1 (ENSPPAG00000040862) #16	LIN9 (ENSPPAG00000029947) #17	ENSPPAG00000013035 #18	ACBD3 (ENSPPAG00000034288) #19	ENSPPAG00000003422 ##20	SDE2 (ENSPPAG00000037583) #21	LEFTY2 (ENSPPAG00000029951) #22	PYCR2 (ENSPPAG00000029624) #23	LEFTY1 (ENSPPAG00000031732) #22	TMEM63A (ENSPPAG00000035003) #25	EPHX1 (ENSPPAG00000037369) #26	SRP9 (ENSPPAG00000042680) #37	ENSPPAG00000027545 #34	LBR (ENSPPAG00000029928)	DNAH14 (ENSPPAG00000033548) #32	CNIH3 (ENSPPAG00000041930) #31	WDR26 (ENSPPAG00000030839) #30	CNIH4 (ENSPPAG00000037258) #29	NVL (ENSPPAG00000030596) #28	DEGS1 (ENSPPAG00000033472) #27	ENSPPAG00000005299	FBXO28 (ENSPPAG00000034613)
Chimpanzee	MODERN SPECIES		ENSPTRG00000048948	JMJD4 (ENSPTRG00000002059)	ZNF678 (ENSPTRG00000002057)	CDC42BPA (ENSPTRG00000042934) #11	COQ8A (ENSPTRG00000033741) #12	PSEN2 (ENSPTRG00000002052) #13	ITPKB (ENSPTRG00000002051) #14	STUM (ENSPTRG00000030135) #15	ENSPTRG00000043266	PARP1 (ENSPTRG00000002049) #16	LIN9 (ENSPTRG00000002048) #17	MIXL1 (ENSPTRG00000049290) #18	ACBD3 (ENSPTRG00000002046) #19	H3-3A (ENSPTRG00000002045) #20	SDE2 (ENSPTRG00000002044) #21	LEFTY2 (ENSPTRG00000002043) #22	PYCR2 (ENSPTRG00000002042) #23	LEFTY1 (ENSPTRG00000049763) #22	TMEM63A (ENSPTRG00000002040) #25	EPHX1 (ENSPTRG00000002039) #26	SRP9 (ENSPTRG00000002038) #37	ENAH (ENSPTRG00000002037) #34	LBR (ENSPTRG00000002036)	DNAH14 (ENSPTRG00000050408) #32	CNIH3 (ENSPTRG00000002027) #31	WDR26 (ENSPTRG00000002026) #30	CNIH4 (ENSPTRG00000002025) #29	NVL (ENSPTRG00000046422) #28	DEGS1 (ENSPTRG00000002023) #27	ENSPTRG00000020477	FBXO28 (ENSPTRG00000002021)
Human	MODERN SPECIES		PRSS38 (ENSG00000185888)	JMJD4 (ENSG00000081692)	SNAP47 (ENSG00000143740)	ZNF678 (ENSG00000181450)	CDC42BPA (ENSG00000143776) #11	COQ8A (ENSG00000163050) #12	PSEN2 (ENSG00000143801) #13	ITPKB (ENSG00000143772) #14	STUM (ENSG00000203685) #15	PARP1 (ENSG00000143799) #16	LIN9 (ENSG00000183814) #17	MIXL1 (ENSG00000185155) #18	ACBD3 (ENSG00000182827) #19	H3-3A (ENSG00000163041) ##20	SDE2 (ENSG00000143751) #21	LEFTY2 (ENSG00000143768) #22	PYCR2 (ENSG00000143811) #23	ENSG00000255835	LEFTY1 (ENSG00000243709) #22	TMEM63A (ENSG00000196187) #25	EPHX1 (ENSG00000143819) #26	SRP9 (ENSG00000143742) #37	ENAH (ENSG00000154380) #34	LBR (ENSG00000143815)	DNAH14 (ENSG00000185842) #32	CNIH3 (ENSG00000143786) #31	WDR26 (ENSG00000162923) #30	CNIH4 (ENSG00000143771) #29	NVL (ENSG00000143748) #28	DEGS1 (ENSG00000143753) #27	FBXO28 (ENSG00000143756)
Gorilla	MODERN SPECIES		ENSGGOG00000037683	JMJD4 (ENSGGOG00000008441)	ENSGGOG00000041432	ZNF678 (ENSGGOG00000042328)	CDC42BPA (ENSGGOG00000009605) #11	COQ8A (ENSGGOG00000009596) #12	PSEN2 (ENSGGOG00000003332) #13	ENSGGOG00000015112 #14	ENSGGOG00000015658 #15	PARP1 (ENSGGOG00000006308) #16	LIN9 (ENSGGOG00000002125) #17	MIXL1 (ENSGGOG00000002122) #18	ACBD3 (ENSGGOG00000001129) #19	ENSGGOG00000022526 ##20	SDE2 (ENSGGOG00000009850) #21	LEFTY2 (ENSGGOG00000000866) #22	PYCR2 (ENSGGOG00000014247) #23	LEFTY1 (ENSGGOG00000038788) #22	TMEM63A (ENSGGOG00000000862) #25	EPHX1 (ENSGGOG00000000859) #26	SRP9 (ENSGGOG00000011555) #37	ENSGGOG00000022660 #34	LBR (ENSGGOG00000015250)	ENSGGOG00000040109 #32	DNAH14 (ENSGGOG00000040408)	CNIH3 (ENSGGOG00000000242) #31	WDR26 (ENSGGOG00000008231) #30	CNIH4 (ENSGGOG00000005708) #29	ENSGGOG00000038475	NVL (ENSGGOG00000034871) #28	DEGS1 (ENSGGOG00000009270) #27
Orangutan	MODERN SPECIES		SNAP47 (ENSPPYG00000000153)	JMJD4 (ENSPPYG00000000154)	ENSPPYG00000000155	CDC42BPA (ENSPPYG00000000158) #11	COQ8A (ENSPPYG00000000159) #12	PSEN2 (ENSPPYG00000000160) #13	ITPKB (ENSPPYG00000000161) #14	STUM (ENSPPYG00000000162) #15	PARP1 (ENSPPYG00000000164) #16	ENSPPYG00000000165 #17	MIXL1 (ENSPPYG00000000166) #18	ACBD3 (ENSPPYG00000029541) #19	ENSPPYG00000032085	ENSPPYG00000000168 #20	SDE2 (ENSPPYG00000000169) #21	LEFTY2 (ENSPPYG00000030151) #22	PYCR2 (ENSPPYG00000000171) #23	LEFTY1 (ENSPPYG00000033926) #22	TMEM63A (ENSPPYG00000029911) #25	EPHX1 (ENSPPYG00000039616) #26	ENSPPYG00000000173 #26	SRP9 (ENSPPYG00000000174) #37	ENSPPYG00000000175 #34	LBR (ENSPPYG00000000176)	DNAH14 (ENSPPYG00000039314) #32	CNIH3 (ENSPPYG00000000181) #31	ENSPPYG00000002704	WDR26 (ENSPPYG00000000182) #30	CNIH4 (ENSPPYG00000040381) #29	NVL (ENSPPYG00000000184) #28	DEGS1 (ENSPPYG00000010649) #27
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Hominidae	ANCESTRAL SPECIES	6	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000003465.b.b.o.b	ENSGT00390000002970.q	ENSGT00950000182960.a.a.a.a.b.rb.w.a
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000003465.b.b.o.b	ENSGT00390000002970.q	ENSGT00950000182960.a.a.a.a.b.rb.w.a	ENSGT00950000183070.a.b.g.b.b.a.a
Pan	ANCESTRAL SPECIES		ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000157177.i.b	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000003465.b.b.o.b	ENSGT00390000002970.q	ENSGT00950000182960.a.a.a.a.b.rb.w.a	ENSGT00950000183070.a.b.g.b.b.a.a
Chimpanzee	MODERN SPECIES		ZNF678 (ENSPTRG00000002057)	CDC42BPA (ENSPTRG00000042934) #11	COQ8A (ENSPTRG00000033741) #12	PSEN2 (ENSPTRG00000002052) #13	ITPKB (ENSPTRG00000002051) #14	STUM (ENSPTRG00000030135) #15	ENSPTRG00000043266	PARP1 (ENSPTRG00000002049) #16	LIN9 (ENSPTRG00000002048) #17	MIXL1 (ENSPTRG00000049290) #18	ACBD3 (ENSPTRG00000002046) #19	H3-3A (ENSPTRG00000002045) #20	SDE2 (ENSPTRG00000002044) #21	LEFTY2 (ENSPTRG00000002043) #22	PYCR2 (ENSPTRG00000002042) #23	LEFTY1 (ENSPTRG00000049763) #22	TMEM63A (ENSPTRG00000002040) #25	EPHX1 (ENSPTRG00000002039) #26	SRP9 (ENSPTRG00000002038) #37	ENAH (ENSPTRG00000002037) #34	LBR (ENSPTRG00000002036)	DNAH14 (ENSPTRG00000050408) #32	CNIH3 (ENSPTRG00000002027) #31	WDR26 (ENSPTRG00000002026) #30	CNIH4 (ENSPTRG00000002025) #29	NVL (ENSPTRG00000046422) #28	DEGS1 (ENSPTRG00000002023) #27	ENSPTRG00000020477	FBXO28 (ENSPTRG00000002021)	ENSPTRG00000051447	ENSPTRG00000050115
Bonobo	MODERN SPECIES		ENSPPAG00000042857	CDC42BPA (ENSPPAG00000030700) #11	COQ8A (ENSPPAG00000038783) #12	PSEN2 (ENSPPAG00000029453) #13	ITPKB (ENSPPAG00000034181) #14	ENSPPAG00000026314 #15	ENSPPAG00000035608	PARP1 (ENSPPAG00000040862) #16	LIN9 (ENSPPAG00000029947) #17	ENSPPAG00000013035 #18	ACBD3 (ENSPPAG00000034288) #19	ENSPPAG00000003422 ##20	SDE2 (ENSPPAG00000037583) #21	LEFTY2 (ENSPPAG00000029951) #22	PYCR2 (ENSPPAG00000029624) #23	LEFTY1 (ENSPPAG00000031732) #22	TMEM63A (ENSPPAG00000035003) #25	EPHX1 (ENSPPAG00000037369) #26	SRP9 (ENSPPAG00000042680) #37	ENSPPAG00000027545 #34	LBR (ENSPPAG00000029928)	DNAH14 (ENSPPAG00000033548) #32	CNIH3 (ENSPPAG00000041930) #31	WDR26 (ENSPPAG00000030839) #30	CNIH4 (ENSPPAG00000037258) #29	NVL (ENSPPAG00000030596) #28	DEGS1 (ENSPPAG00000033472) #27	ENSPPAG00000005299	FBXO28 (ENSPPAG00000034613)	ENSPPAG00000029629	ENSPPAG00000028543
Human	MODERN SPECIES		ZNF678 (ENSG00000181450)	CDC42BPA (ENSG00000143776) #11	COQ8A (ENSG00000163050) #12	PSEN2 (ENSG00000143801) #13	ITPKB (ENSG00000143772) #14	STUM (ENSG00000203685) #15	PARP1 (ENSG00000143799) #16	LIN9 (ENSG00000183814) #17	MIXL1 (ENSG00000185155) #18	ACBD3 (ENSG00000182827) #19	H3-3A (ENSG00000163041) ##20	SDE2 (ENSG00000143751) #21	LEFTY2 (ENSG00000143768) #22	PYCR2 (ENSG00000143811) #23	ENSG00000255835	LEFTY1 (ENSG00000243709) #22	TMEM63A (ENSG00000196187) #25	EPHX1 (ENSG00000143819) #26	SRP9 (ENSG00000143742) #37	ENAH (ENSG00000154380) #34	LBR (ENSG00000143815)	DNAH14 (ENSG00000185842) #32	CNIH3 (ENSG00000143786) #31	WDR26 (ENSG00000162923) #30	CNIH4 (ENSG00000143771) #29	NVL (ENSG00000143748) #28	DEGS1 (ENSG00000143753) #27	FBXO28 (ENSG00000143756)	TP53BP2 (ENSG00000143514)	CAPN2 (ENSG00000162909)	CAPN8 (ENSG00000203697)
Gorilla	MODERN SPECIES		ENSGGOG00000041432	ZNF678 (ENSGGOG00000042328)	CDC42BPA (ENSGGOG00000009605) #11	COQ8A (ENSGGOG00000009596) #12	PSEN2 (ENSGGOG00000003332) #13	ENSGGOG00000015112 #14	ENSGGOG00000015658 #15	PARP1 (ENSGGOG00000006308) #16	LIN9 (ENSGGOG00000002125) #17	MIXL1 (ENSGGOG00000002122) #18	ACBD3 (ENSGGOG00000001129) #19	ENSGGOG00000022526 ##20	SDE2 (ENSGGOG00000009850) #21	LEFTY2 (ENSGGOG00000000866) #22	PYCR2 (ENSGGOG00000014247) #23	LEFTY1 (ENSGGOG00000038788) #22	TMEM63A (ENSGGOG00000000862) #25	EPHX1 (ENSGGOG00000000859) #26	SRP9 (ENSGGOG00000011555) #37	ENSGGOG00000022660 #34	LBR (ENSGGOG00000015250)	ENSGGOG00000040109 #32	DNAH14 (ENSGGOG00000040408)	CNIH3 (ENSGGOG00000000242) #31	WDR26 (ENSGGOG00000008231) #30	CNIH4 (ENSGGOG00000005708) #29	ENSGGOG00000038475	NVL (ENSGGOG00000034871) #28	DEGS1 (ENSGGOG00000009270) #27	ENSGGOG00000027698	FBXO28 (ENSGGOG00000010974)
Orangutan	MODERN SPECIES		ENSPPYG00000000155	CDC42BPA (ENSPPYG00000000158) #11	COQ8A (ENSPPYG00000000159) #12	PSEN2 (ENSPPYG00000000160) #13	ITPKB (ENSPPYG00000000161) #14	STUM (ENSPPYG00000000162) #15	PARP1 (ENSPPYG00000000164) #16	ENSPPYG00000000165 #17	MIXL1 (ENSPPYG00000000166) #18	ACBD3 (ENSPPYG00000029541) #19	ENSPPYG00000032085	ENSPPYG00000000168 #20	SDE2 (ENSPPYG00000000169) #21	LEFTY2 (ENSPPYG00000030151) #22	PYCR2 (ENSPPYG00000000171) #23	LEFTY1 (ENSPPYG00000033926) #22	TMEM63A (ENSPPYG00000029911) #25	EPHX1 (ENSPPYG00000039616) #26	ENSPPYG00000000173 #26	SRP9 (ENSPPYG00000000174) #37	ENSPPYG00000000175 #34	LBR (ENSPPYG00000000176)	DNAH14 (ENSPPYG00000039314) #32	CNIH3 (ENSPPYG00000000181) #31	ENSPPYG00000002704	WDR26 (ENSPPYG00000000182) #30	CNIH4 (ENSPPYG00000040381) #29	NVL (ENSPPYG00000000184) #28	DEGS1 (ENSPPYG00000010649) #27	FBXO28 (ENSPPYG00000000185)	TP53BP2 (ENSPPYG00000000186)
Gibbon	MODERN SPECIES	20	ZNF678 (ENSNLEG00000008917)	CDC42BPA (ENSNLEG00000013980) #11	COQ8A (ENSNLEG00000013937) #12	PSEN2 (ENSNLEG00000013924) #13	ITPKB (ENSNLEG00000013915) #14	ENSNLEG00000013913 #15	ENSNLEG00000032044	PARP1 (ENSNLEG00000013905) #16	LIN9 (ENSNLEG00000013837) #17	MIXL1 (ENSNLEG00000032618) #18	ACBD3 (ENSNLEG00000034130) #19	ENSNLEG00000013798 #20	SDE2 (ENSNLEG00000013788) #21	ENSNLEG00000013769 #22	PYCR2 (ENSNLEG00000026763) #23	LEFTY1 (ENSNLEG00000036199) #22	TMEM63A (ENSNLEG00000013755) #25	EPHX1 (ENSNLEG00000013747) #26	SRP9 (ENSNLEG00000013740) #37	ENSNLEG00000013693 #34	LBR (ENSNLEG00000027476)	ENSNLEG00000013644	CNIH3 (ENSNLEG00000032625) #31	ENSNLEG00000033301	WDR26 (ENSNLEG00000013555) #30	ENSNLEG00000032458 #29	NVL (ENSNLEG00000013437) #28	DEGS1 (ENSNLEG00000013432) #27	FBXO28 (ENSNLEG00000013415)	TP53BP2 (ENSNLEG00000013377)	CAPN2 (ENSNLEG00000013341)
Hominoidea	ANCESTRAL SPECIES																	ENSGT00390000010056.r #22
Gibbon	MODERN SPECIES	20	JMJD4 (ENSNLEG00000032639)	ENSNLEG00000031801	ZNF678 (ENSNLEG00000008917)	CDC42BPA (ENSNLEG00000013980) #11	COQ8A (ENSNLEG00000013937) #12	PSEN2 (ENSNLEG00000013924) #13	ITPKB (ENSNLEG00000013915) #14	ENSNLEG00000013913 #15	ENSNLEG00000032044	PARP1 (ENSNLEG00000013905) #16	LIN9 (ENSNLEG00000013837) #17	MIXL1 (ENSNLEG00000032618) #18	ACBD3 (ENSNLEG00000034130) #19	ENSNLEG00000013798 #20	SDE2 (ENSNLEG00000013788) #21	ENSNLEG00000013769 #22	PYCR2 (ENSNLEG00000026763) #23	LEFTY1 (ENSNLEG00000036199) #22	TMEM63A (ENSNLEG00000013755) #25	EPHX1 (ENSNLEG00000013747) #26	SRP9 (ENSNLEG00000013740) #37	ENSNLEG00000013693 #34	LBR (ENSNLEG00000027476)	ENSNLEG00000013644	CNIH3 (ENSNLEG00000032625) #31	ENSNLEG00000033301	WDR26 (ENSNLEG00000013555) #30	ENSNLEG00000032458 #29	NVL (ENSNLEG00000013437) #28	DEGS1 (ENSNLEG00000013432) #27	FBXO28 (ENSNLEG00000013415)
Tarsier	MODERN SPECIES	6081															PYCR2 (ENSTSYG00000032908) #23	ENSTSYG00000030725 #22	TMEM63A (ENSTSYG00000036713) #25	EPHX1 (ENSTSYG00000034653) #26	SRP9 (ENSTSYG00000026832) #37
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Lemuriformes	ANCESTRAL SPECIES	6	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b.i.a #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Lemuriformes_a	ANCESTRAL SPECIES	113	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	304	ENSPCOG00000025467	CNST (ENSPCOG00000014228) #7	SCCPDH (ENSPCOG00000019439) #8	AHCTF1 (ENSPCOG00000027036) #10	CDC42BPA (ENSPCOG00000027076) #11	COQ8A (ENSPCOG00000022285) #12	PSEN2 (ENSPCOG00000013955) #13	ITPKB (ENSPCOG00000028557) #14	STUM (ENSPCOG00000013568) #15	PARP1 (ENSPCOG00000016918) #16	LIN9 (ENSPCOG00000007823) #17	MIXL1 (ENSPCOG00000024192) #18	ACBD3 (ENSPCOG00000010358) #19	ENSPCOG00000026943 ##20	SDE2 (ENSPCOG00000015642) #21	ENSPCOG00000028060 #22	PYCR2 (ENSPCOG00000018908) #23	ENSPCOG00000020232 #22	TMEM63A (ENSPCOG00000012985) #25	EPHX1 (ENSPCOG00000013150) #26	SRP9 (ENSPCOG00000021743) #37
Coquerels sifaka	MODERN SPECIES	304	SCCPDH (ENSPCOG00000019439) #8	AHCTF1 (ENSPCOG00000027036) #10	CDC42BPA (ENSPCOG00000027076) #11	COQ8A (ENSPCOG00000022285) #12	PSEN2 (ENSPCOG00000013955) #13	ITPKB (ENSPCOG00000028557) #14	STUM (ENSPCOG00000013568) #15	PARP1 (ENSPCOG00000016918) #16	LIN9 (ENSPCOG00000007823) #17	MIXL1 (ENSPCOG00000024192) #18	ACBD3 (ENSPCOG00000010358) #19	ENSPCOG00000026943 ##20	SDE2 (ENSPCOG00000015642) #21	ENSPCOG00000028060 #22	PYCR2 (ENSPCOG00000018908) #23	ENSPCOG00000020232 #22	TMEM63A (ENSPCOG00000012985) #25	EPHX1 (ENSPCOG00000013150) #26	SRP9 (ENSPCOG00000021743) #37
Mouse lemur	MODERN SPECIES	8	CNST (ENSMICG00000036496) #7	SCCPDH (ENSMICG00000014588) #8	ENSMICG00000034974	AHCTF1 (ENSMICG00000014617) #10	CDC42BPA (ENSMICG00000013466) #11	COQ8A (ENSMICG00000013440) #12	PSEN2 (ENSMICG00000013427) #13	ITPKB (ENSMICG00000038100) #14	STUM (ENSMICG00000042487) #15	PARP1 (ENSMICG00000017076) #16	LIN9 (ENSMICG00000017073) #17	MIXL1 (ENSMICG00000046165) #18	ACBD3 (ENSMICG00000035503) #19	H3-3A (ENSMICG00000044151) ##20	SDE2 (ENSMICG00000004083) #21	ENSMICG00000041934 #22	PYCR2 (ENSMICG00000017416) #23	ENSMICG00000027213	TMEM63A (ENSMICG00000004058) #25	EPHX1 (ENSMICG00000034513) #26	ENSMICG00000030104 #37	ENSMICG00000009785	ENAH (ENSMICG00000010930) #34	LBR (ENSMICG00000010070)	ENSMICG00000031047	DNAH14 (ENSMICG00000037251) #32	CNIH3 (ENSMICG00000031871) #31	WDR26 (ENSMICG00000006896) #30	ENSMICG00000030956	CNIH4 (ENSMICG00000032337) #29	NVL (ENSMICG00000006602) #28
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	160	NUP133 (ENSOGAG00000006736)	ACTA1 (ENSOGAG00000016005)	ENSOGAG00000008357	RAB4A (ENSOGAG00000008356)	RHOU (ENSOGAG00000002345)	ENSOGAG00000027093	ENSOGAG00000026713 #15	ENSOGAG00000032900	PARP1 (ENSOGAG00000016206) #16	ENSOGAG00000007352 #17	MIXL1 (ENSOGAG00000027252) #18	ACBD3 (ENSOGAG00000004334) #19	ENSOGAG00000024312 ##20	SDE2 (ENSOGAG00000002069) #21	ENSOGAG00000033158	ENSOGAG00000002817 #22	VOPP1 (ENSOGAG00000008223)	LANCL2 (ENSOGAG00000009098)	EGFR (ENSOGAG00000009092)	ENSOGAG00000031014	SEC61G (ENSOGAG00000010262)	VSTM2A (ENSOGAG00000005539)
Bushbaby	MODERN SPECIES	160	ENSOGAG00000026713 #15	ENSOGAG00000027093	RHOU (ENSOGAG00000002345)	RAB4A (ENSOGAG00000008356)	ENSOGAG00000008357	ACTA1 (ENSOGAG00000016005)	NUP133 (ENSOGAG00000006736)	ENSOGAG00000006746	ENSOGAG00000003024	URB2 (ENSOGAG00000003021)	GALNT2 (ENSOGAG00000026642)	PGBD5 (ENSOGAG00000010600)	COG2 (ENSOGAG00000011283)	AGT (ENSOGAG00000011286)	PYCR2 (ENSOGAG00000024897) #23	ENSOGAG00000033220 #22	TMEM63A (ENSOGAG00000010346) #25	EPHX1 (ENSOGAG00000010341) #26	ENSOGAG00000001752 #37	ENAH (ENSOGAG00000031134) #34	LBR (ENSOGAG00000013724)	DNAH14 (ENSOGAG00000028956) #32	CNIH3 (ENSOGAG00000003349) #31	ENSOGAG00000029941	WDR26 (ENSOGAG00000015427) #30	CNIH4 (ENSOGAG00000008894) #29	NVL (ENSOGAG00000003955) #28	DEGS1 (ENSOGAG00000010827) #27	FBXO28 (ENSOGAG00000032645)	TP53BP2 (ENSOGAG00000012552)	CAPN2 (ENSOGAG00000012548)
Laurasiatheria	ANCESTRAL SPECIES	28	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Artiodactyla	ANCESTRAL SPECIES	25	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Suina	ANCESTRAL SPECIES	55	ENSGT00390000004799.j #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a.b #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT01100000263504.a.a.yb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27
Pig	DUPLICATION
Pig	MODERN SPECIES	1	SCCPDH (ENSSSCG00000010866) #8	ENSSSCG00000060854	AHCTF1 (ENSSSCG00000010863) #10	CDC42BPA (ENSSSCG00000010862) #11	COQ8A (ENSSSCG00000010861) #12	PSEN2 (ENSSSCG00000010860) #13	ENSSSCG00000040100 #14	ENSSSCG00000046588 #14	STUM (ENSSSCG00000024288) #15	PARP1 (ENSSSCG00000023660) #16	LIN9 (ENSSSCG00000021310) #17	MIXL1 (ENSSSCG00000030675) #18	ACBD3 (ENSSSCG00000024180) #19	H3-3A (ENSSSCG00000023971) ##20	SDE2 (ENSSSCG00000010858) #21	LEFTY2 (ENSSSCG00000032299) #22	PYCR2 (ENSSSCG00000010855) #23	ENSSSCG00000038188 #22	TMEM63A (ENSSSCG00000010854) #25	EPHX1 (ENSSSCG00000010853) #26	SRP9 (ENSSSCG00000031664) #37	ENSSSCG00000017768	ENAH (ENSSSCG00000038646) #34	LBR (ENSSSCG00000032397)	DNAH14 (ENSSSCG00000031483) #32	CNIH3 (ENSSSCG00000034972) #31	WDR26 (ENSSSCG00000010849) #30	CNIH4 (ENSSSCG00000035034) #29	NVL (ENSSSCG00000026705) #28	DEGS1 (ENSSSCG00000024484) #27	ZNF596 (ENSSSCG00000025290)
Pig	MODERN SPECIES	1	AHCTF1 (ENSSSCG00000010863) #10	CDC42BPA (ENSSSCG00000010862) #11	COQ8A (ENSSSCG00000010861) #12	PSEN2 (ENSSSCG00000010860) #13	ENSSSCG00000040100 #14	ENSSSCG00000046588 #14	STUM (ENSSSCG00000024288) #15	PARP1 (ENSSSCG00000023660) #16	LIN9 (ENSSSCG00000021310) #17	MIXL1 (ENSSSCG00000030675) #18	ACBD3 (ENSSSCG00000024180) #19	H3-3A (ENSSSCG00000023971) ##20	SDE2 (ENSSSCG00000010858) #21	LEFTY2 (ENSSSCG00000032299) #22	PYCR2 (ENSSSCG00000010855) #23	ENSSSCG00000038188 #22	TMEM63A (ENSSSCG00000010854) #25	EPHX1 (ENSSSCG00000010853) #26	SRP9 (ENSSSCG00000031664) #37	ENSSSCG00000017768	ENAH (ENSSSCG00000038646) #34	LBR (ENSSSCG00000032397)	DNAH14 (ENSSSCG00000031483) #32	CNIH3 (ENSSSCG00000034972) #31	WDR26 (ENSSSCG00000010849) #30	CNIH4 (ENSSSCG00000035034) #29	NVL (ENSSSCG00000026705) #28	DEGS1 (ENSSSCG00000024484) #27	ZNF596 (ENSSSCG00000025290)	KMO (ENSSSCG00000025686)	FH (ENSSSCG00000028178)
Chacoan peccary	MODERN SPECIES	50														H3-3A (ENSCWAG00000007368) ##20	SDE2 (ENSCWAG00000007407) #21	ENSCWAG00000007440 #22	PYCR2 (ENSCWAG00000007472) #23	TMEM63A (ENSCWAG00000007524) #25	EPHX1 (ENSCWAG00000007633) #26	SRP9 (ENSCWAG00000007657) #37	ENAH (ENSCWAG00000007692) #34	LBR (ENSCWAG00000007748)	ENSCWAG00000007806 #32	ENSCWAG00000007839 #32	ENSCWAG00000007925	ENSCWAG00000008140 ##29	WDR26 (ENSCWAG00000008179) #30	CNIH4 (ENSCWAG00000008250) #29	NVL (ENSCWAG00000008427) #28	DEGS1 (ENSCWAG00000008714) #27	F13B (ENSCWAG00000008757)
Artiodactyla_a	ANCESTRAL SPECIES	26	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Artiodactyla_b	ANCESTRAL SPECIES	26	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Cetacea	ANCESTRAL SPECIES	23	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376.tb.a #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Odontoceti	ANCESTRAL SPECIES	24	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376.tb.a #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Odontoceti_a	ANCESTRAL SPECIES	27	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376.tb.a #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb ##20	ENSGT00530000063402.b #21	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056 #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013102.e.a.c.b	ENSGT00390000018505.b #37	ENSGT00940000157376.tb.a #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Monodontidae	ANCESTRAL SPECIES		ENSGT00390000018900 #10	ENSGT00390000014577.a.b	ENSGT00530000063929.a.a.e.a	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb ##20	ENSGT00530000063402.b #21	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056 #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013102.e.a.c.b	ENSGT00390000018505.b #37	ENSGT00940000157376.tb.a #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	304	SCCPDH (ENSMMNG00015001432) #8	ENSMMNG00015001366 #9	AHCTF1 (ENSMMNG00015001241) #10	ENSMMNG00015001190	CDC42BPA (ENSMMNG00015000504) #11	COQ8A (ENSMMNG00015000182) #12	PSEN2 (ENSMMNG00015000131) #13	ITPKB (ENSMMNG00015000098) #14	STUM (ENSMMNG00015008698) #15	PARP1 (ENSMMNG00015008660) #16	LIN9 (ENSMMNG00015008632) #17	MIXL1 (ENSMMNG00015008612) #18	ACBD3 (ENSMMNG00015008597) #19	ENSMMNG00015008586 ##20	SDE2 (ENSMMNG00015008574) #21	ENSMMNG00015008553 #22	PYCR2 (ENSMMNG00015008531) #23	ENSMMNG00015008515 #22	TMEM63A (ENSMMNG00015008488) #25	EPHX1 (ENSMMNG00015008464) #26	SRP9 (ENSMMNG00015008443) #37	ENSMMNG00015008420 #34	LBR (ENSMMNG00015008386)	CNIH3 (ENSMMNG00015008371) #31	WDR26 (ENSMMNG00015008361) #30	CNIH4 (ENSMMNG00015008342) #29	NVL (ENSMMNG00015008286) #28	DEGS1 (ENSMMNG00015008254) #27	ENSMMNG00015008235	TP53BP2 (ENSMMNG00015008201)	CAPN2 (ENSMMNG00015008136)
Narwhal	MODERN SPECIES	304	AHCTF1 (ENSMMNG00015001241) #10	ENSMMNG00015001190	CDC42BPA (ENSMMNG00015000504) #11	COQ8A (ENSMMNG00015000182) #12	PSEN2 (ENSMMNG00015000131) #13	ITPKB (ENSMMNG00015000098) #14	STUM (ENSMMNG00015008698) #15	PARP1 (ENSMMNG00015008660) #16	LIN9 (ENSMMNG00015008632) #17	MIXL1 (ENSMMNG00015008612) #18	ACBD3 (ENSMMNG00015008597) #19	ENSMMNG00015008586 ##20	SDE2 (ENSMMNG00015008574) #21	ENSMMNG00015008553 #22	PYCR2 (ENSMMNG00015008531) #23	ENSMMNG00015008515 #22	TMEM63A (ENSMMNG00015008488) #25	EPHX1 (ENSMMNG00015008464) #26	SRP9 (ENSMMNG00015008443) #37	ENSMMNG00015008420 #34	LBR (ENSMMNG00015008386)	CNIH3 (ENSMMNG00015008371) #31	WDR26 (ENSMMNG00015008361) #30	CNIH4 (ENSMMNG00015008342) #29	NVL (ENSMMNG00015008286) #28	DEGS1 (ENSMMNG00015008254) #27	ENSMMNG00015008235	TP53BP2 (ENSMMNG00015008201)	CAPN2 (ENSMMNG00015008136)	ENSMMNG00015008104	ENSMMNG00015008084
Beluga whale	MODERN SPECIES	21	AHCTF1 (ENSDLEG00000011885) #10	ENSDLEG00000011853	ENSDLEG00000011842	CDC42BPA (ENSDLEG00000003384) #11	COQ8A (ENSDLEG00000001874) #12	PSEN2 (ENSDLEG00000001858) #13	ITPKB (ENSDLEG00000001845) #14	STUM (ENSDLEG00000001836) #15	PARP1 (ENSDLEG00000001796) #16	LIN9 (ENSDLEG00000001768) #17	MIXL1 (ENSDLEG00000001757) #18	ACBD3 (ENSDLEG00000001749) #19	H3-3A (ENSDLEG00000001740) ##20	SDE2 (ENSDLEG00000001732) #21	PYCR2 (ENSDLEG00000001719) #23	ENSDLEG00000001704 #22	TMEM63A (ENSDLEG00000001668) #25	EPHX1 (ENSDLEG00000001643) #26	ENSDLEG00000001631	SRP9 (ENSDLEG00000001626) #37	ENSDLEG00000000835 #34	LBR (ENSDLEG00000000619)	ENSDLEG00000000602	CNIH3 (ENSDLEG00000000564) #31	WDR26 (ENSDLEG00000000539) #30	CNIH4 (ENSDLEG00000000514) #29	NVL (ENSDLEG00000000461) #28	DEGS1 (ENSDLEG00000000439) #27	FBXO28 (ENSDLEG00000000426)	TP53BP2 (ENSDLEG00000000370)	CAPN2 (ENSDLEG00000000249)
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES		SCCPDH (ENSPSNG00000002932) #8	ENSPSNG00000002969	AHCTF1 (ENSPSNG00000003012) #10	CDC42BPA (ENSPSNG00000003179) #11	ENSPSNG00000003290	COQ8A (ENSPSNG00000003309) #12	PSEN2 (ENSPSNG00000003404) #13	ITPKB (ENSPSNG00000003506) #14	STUM (ENSPSNG00000003602) #15	PARP1 (ENSPSNG00000003624) #16	LIN9 (ENSPSNG00000003691) #17	MIXL1 (ENSPSNG00000003754) #18	ACBD3 (ENSPSNG00000003774) #19	H3-3A (ENSPSNG00000003793) ##20	SDE2 (ENSPSNG00000003818) #21	ENSPSNG00000003838 #22	PYCR2 (ENSPSNG00000003860) #23	ENSPSNG00000003871 #22	TMEM63A (ENSPSNG00000000052) #25	EPHX1 (ENSPSNG00000000088) #26	ENSPSNG00000000117	ENSPSNG00000000145 #37	ENSPSNG00000000246 #34	LBR (ENSPSNG00000000326)	CNIH3 (ENSPSNG00000000369) #31	WDR26 (ENSPSNG00000000396) #30	CNIH4 (ENSPSNG00000000427) #29	NVL (ENSPSNG00000000479) #28	DEGS1 (ENSPSNG00000000518) #27	FBXO28 (ENSPSNG00000000541)	TP53BP2 (ENSPSNG00000000569)
Vaquita	MODERN SPECIES		AHCTF1 (ENSPSNG00000003012) #10	CDC42BPA (ENSPSNG00000003179) #11	ENSPSNG00000003290	COQ8A (ENSPSNG00000003309) #12	PSEN2 (ENSPSNG00000003404) #13	ITPKB (ENSPSNG00000003506) #14	STUM (ENSPSNG00000003602) #15	PARP1 (ENSPSNG00000003624) #16	LIN9 (ENSPSNG00000003691) #17	MIXL1 (ENSPSNG00000003754) #18	ACBD3 (ENSPSNG00000003774) #19	H3-3A (ENSPSNG00000003793) ##20	SDE2 (ENSPSNG00000003818) #21	ENSPSNG00000003838 #22	PYCR2 (ENSPSNG00000003860) #23	ENSPSNG00000003871 #22	TMEM63A (ENSPSNG00000000052) #25	EPHX1 (ENSPSNG00000000088) #26	ENSPSNG00000000117	ENSPSNG00000000145 #37	ENSPSNG00000000246 #34	LBR (ENSPSNG00000000326)	CNIH3 (ENSPSNG00000000369) #31	WDR26 (ENSPSNG00000000396) #30	CNIH4 (ENSPSNG00000000427) #29	NVL (ENSPSNG00000000479) #28	DEGS1 (ENSPSNG00000000518) #27	FBXO28 (ENSPSNG00000000541)	TP53BP2 (ENSPSNG00000000569)	CAPN2 (ENSPSNG00000000652)	ENSPSNG00000000722
Dolphin	DUPLICATION
Dolphin	MODERN SPECIES	6575																ENSTTRG00000014474 #22
Dolphin	MODERN SPECIES	789														ENSTTRG00000012389	SDE2 (ENSTTRG00000012379) #21	ENSTTRG00000012370 #22	PYCR2 (ENSTTRG00000012363) #23
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	15	ENSPCTG00005002183	ENSPCTG00005002174	ENSPCTG00005002163	SCCPDH (ENSPCTG00005002144) #8	AHCTF1 (ENSPCTG00005001979) #10	CDC42BPA (ENSPCTG00005001336) #11	PSEN2 (ENSPCTG00005001191) #13	ITPKB (ENSPCTG00005001181) #14	STUM (ENSPCTG00005001169) #15	PARP1 (ENSPCTG00005001077) #16	LIN9 (ENSPCTG00005000990) #17	MIXL1 (ENSPCTG00005000953) #18	ACBD3 (ENSPCTG00005000938) #19	ENSPCTG00005000927 ##20	SDE2 (ENSPCTG00005000908) #21	ENSPCTG00005000889 #22	PYCR2 (ENSPCTG00005000862) #23	ENSPCTG00005000846 #22	TMEM63A (ENSPCTG00005000810) #25	EPHX1 (ENSPCTG00005000792) #26	SRP9 (ENSPCTG00005000768) #37	ENAH (ENSPCTG00005000731) #34	LBR (ENSPCTG00005000679)	CNIH3 (ENSPCTG00005000645) #31	WDR26 (ENSPCTG00005000611) #30	CNIH4 (ENSPCTG00005000590) #29	ENSPCTG00005000568	NVL (ENSPCTG00005000438) #28	DEGS1 (ENSPCTG00005000386) #27	FBXO28 (ENSPCTG00005000364)	TP53BP2 (ENSPCTG00005000322)
Sperm whale	MODERN SPECIES	15	ENSPCTG00005002163	SCCPDH (ENSPCTG00005002144) #8	AHCTF1 (ENSPCTG00005001979) #10	CDC42BPA (ENSPCTG00005001336) #11	PSEN2 (ENSPCTG00005001191) #13	ITPKB (ENSPCTG00005001181) #14	STUM (ENSPCTG00005001169) #15	PARP1 (ENSPCTG00005001077) #16	LIN9 (ENSPCTG00005000990) #17	MIXL1 (ENSPCTG00005000953) #18	ACBD3 (ENSPCTG00005000938) #19	ENSPCTG00005000927 ##20	SDE2 (ENSPCTG00005000908) #21	ENSPCTG00005000889 #22	PYCR2 (ENSPCTG00005000862) #23	ENSPCTG00005000846 #22	TMEM63A (ENSPCTG00005000810) #25	EPHX1 (ENSPCTG00005000792) #26	SRP9 (ENSPCTG00005000768) #37	ENAH (ENSPCTG00005000731) #34	LBR (ENSPCTG00005000679)	CNIH3 (ENSPCTG00005000645) #31	WDR26 (ENSPCTG00005000611) #30	CNIH4 (ENSPCTG00005000590) #29	ENSPCTG00005000568	NVL (ENSPCTG00005000438) #28	DEGS1 (ENSPCTG00005000386) #27	FBXO28 (ENSPCTG00005000364)	TP53BP2 (ENSPCTG00005000322)	CAPN2 (ENSPCTG00005000250)	ENSPCTG00005000213
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES		SCCPDH (ENSBMSG00010000887) #8	ENSBMSG00010000922 #9	AHCTF1 (ENSBMSG00010000995) #10	ENSBMSG00010001133	CDC42BPA (ENSBMSG00010001349) #11	COQ8A (ENSBMSG00010002111) #12	PSEN2 (ENSBMSG00010002147) #13	ITPKB (ENSBMSG00010002191) #14	STUM (ENSBMSG00010002214) #15	PARP1 (ENSBMSG00010002247) #16	LIN9 (ENSBMSG00010002409) #17	MIXL1 (ENSBMSG00010002500) #18	ACBD3 (ENSBMSG00010002517) #19	ENSBMSG00010002563 ##20	SDE2 (ENSBMSG00010002582) #21	ENSBMSG00010002616 #22	PYCR2 (ENSBMSG00010002659) #23	ENSBMSG00010002682 #22	TMEM63A (ENSBMSG00010002709) #25	EPHX1 (ENSBMSG00010002828) #26	ENSBMSG00010002850	ENSBMSG00010002862 #37	ENSBMSG00010002887 #34	LBR (ENSBMSG00010002944)	ENSBMSG00010002963 #32	ENSBMSG00010002972	ENSBMSG00010002975	CNIH3 (ENSBMSG00010003002) #31	WDR26 (ENSBMSG00010003042) #30	CNIH4 (ENSBMSG00010003094) #29	NVL (ENSBMSG00010003127) #28
Blue whale	MODERN SPECIES		AHCTF1 (ENSBMSG00010000995) #10	ENSBMSG00010001133	CDC42BPA (ENSBMSG00010001349) #11	COQ8A (ENSBMSG00010002111) #12	PSEN2 (ENSBMSG00010002147) #13	ITPKB (ENSBMSG00010002191) #14	STUM (ENSBMSG00010002214) #15	PARP1 (ENSBMSG00010002247) #16	LIN9 (ENSBMSG00010002409) #17	MIXL1 (ENSBMSG00010002500) #18	ACBD3 (ENSBMSG00010002517) #19	ENSBMSG00010002563 ##20	SDE2 (ENSBMSG00010002582) #21	ENSBMSG00010002616 #22	PYCR2 (ENSBMSG00010002659) #23	ENSBMSG00010002682 #22	TMEM63A (ENSBMSG00010002709) #25	EPHX1 (ENSBMSG00010002828) #26	ENSBMSG00010002850	ENSBMSG00010002862 #37	ENSBMSG00010002887 #34	LBR (ENSBMSG00010002944)	ENSBMSG00010002963 #32	ENSBMSG00010002972	ENSBMSG00010002975	CNIH3 (ENSBMSG00010003002) #31	WDR26 (ENSBMSG00010003042) #30	CNIH4 (ENSBMSG00010003094) #29	NVL (ENSBMSG00010003127) #28	DEGS1 (ENSBMSG00010003230) #27	ENSBMSG00010003239
Pecora	ANCESTRAL SPECIES	22	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Percora_a	ANCESTRAL SPECIES	15	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Bovidae	DUPLICATION
Bovidae	ANCESTRAL SPECIES	15	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Caprinae	ANCESTRAL SPECIES	12	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090	ENSGT00740000115684
Goat	MODERN SPECIES	7	CDC42BPA (ENSCHIG00000021878) #11	COQ8A (ENSCHIG00000012633) #12	PSEN2 (ENSCHIG00000025180) #13	ITPKB (ENSCHIG00000016348) #14	STUM (ENSCHIG00000026813) #15	PARP1 (ENSCHIG00000018072) #16	LIN9 (ENSCHIG00000003005) #17	MIXL1 (ENSCHIG00000017640) #18	ACBD3 (ENSCHIG00000010539) #19	ENSCHIG00000021907 ##20	ENSCHIG00000013022	SDE2 (ENSCHIG00000022358) #21	ENSCHIG00000016605	ENSCHIG00000010623 #22	PYCR2 (ENSCHIG00000022032) #23	ENSCHIG00000017375 #22	TMEM63A (ENSCHIG00000026549) #25	EPHX1 (ENSCHIG00000017919) #26	SRP9 (ENSCHIG00000006407) #37	ENSCHIG00000004057	ENSCHIG00000000542	ENAH (ENSCHIG00000022407) #34	LBR (ENSCHIG00000013607)	DNAH14 (ENSCHIG00000021801) #32	CNIH3 (ENSCHIG00000015311) #31	ENSCHIG00000008380	WDR26 (ENSCHIG00000020527) #30	CNIH4 (ENSCHIG00000014392) #29	NVL (ENSCHIG00000001224) #28	DEGS1 (ENSCHIG00000021163) #27	ENSCHIG00000014707
Rambouillet Sheep	MODERN SPECIES	3	ENSOARG00020003724 #9	AHCTF1 (ENSOARG00020003268) #10	CDC42BPA (ENSOARG00020019926) #11	COQ8A (ENSOARG00020019681) #12	PSEN2 (ENSOARG00020019535) #13	ITPKB (ENSOARG00020019465) #14	STUM (ENSOARG00020019418) #15	PARP1 (ENSOARG00020019277) #16	LIN9 (ENSOARG00020018902) #17	MIXL1 (ENSOARG00020018842) #18	ACBD3 (ENSOARG00020018756) #19	H3F3A (ENSOARG00020018672) #20	SDE2 (ENSOARG00020018625) #21	ENSOARG00020018575 #22	PYCR2 (ENSOARG00020018457) #23	ENSOARG00020018411 #22	TMEM63A (ENSOARG00020018308) #25	EPHX1 (ENSOARG00020018225) #26	SRP9 (ENSOARG00020018121) #37	ENSOARG00020018102	ENSOARG00020018058 #34	ENAH (ENSOARG00020017437) #34	LBR (ENSOARG00020017338)	ENSOARG00020017311	DNAH14 (ENSOARG00020016617) #32	CNIH3 (ENSOARG00020016440) #31	ENSOARG00020016393	WDR26 (ENSOARG00020016098) #30	CNIH4 (ENSOARG00020015970) #29	NVL (ENSOARG00020015361) #28	DEGS1 (ENSOARG00020015261) #27
Bovinae	ANCESTRAL SPECIES	12	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Bos	ANCESTRAL SPECIES	12	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Bos_b	ANCESTRAL SPECIES	9	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Cow	MODERN SPECIES	7	CDC42BPA (ENSBTAG00000022777) #11	COQ8A (ENSBTAG00000021880) #12	PSEN2 (ENSBTAG00000013197) #13	ITPKB (ENSBTAG00000053007) #14	ENSBTAG00000033252	STUM (ENSBTAG00000024560) #15	ENSBTAG00000047233	PARP1 (ENSBTAG00000000837) #16	LIN9 (ENSBTAG00000033267) #17	MIXL1 (ENSBTAG00000002139) #18	ACBD3 (ENSBTAG00000013128) #19	H3-3A (ENSBTAG00000024561) ##20	SDE2 (ENSBTAG00000012787) #21	ENSBTAG00000054752 #22	PYCR2 (ENSBTAG00000005835) #23	LEFTY2 (ENSBTAG00000055022) #22	TMEM63A (ENSBTAG00000002854) #25	EPHX1 (ENSBTAG00000000140) #26	SRP9 (ENSBTAG00000033322) #37	ENAH (ENSBTAG00000016185) #34	LBR (ENSBTAG00000008453)	DNAH14 (ENSBTAG00000008449) #32	CNIH3 (ENSBTAG00000053199) #31	WDR26 (ENSBTAG00000011785) #30	CNIH4 (ENSBTAG00000019471) #29	NVL (ENSBTAG00000006718) #28	DEGS1 (ENSBTAG00000012705) #27	FBXO28 (ENSBTAG00000019538)	TP53BP2 (ENSBTAG00000012781)	CAPN2 (ENSBTAG00000012778)	CAPN8 (ENSBTAG00000003600)
Hybrid Bos Indicus	MODERN SPECIES	7	COQ8A (ENSBIXG00005027082) #12	PSEN2 (ENSBIXG00005004681) #13	ITPKB (ENSBIXG00005027239) #14	ENSBIXG00005027257	ENSBIXG00005027292 #15	ENSBIXG00005007774	PARP1 (ENSBIXG00005027371) #16	LIN9 (ENSBIXG00005027424) #17	MIXL1 (ENSBIXG00005027457) #18	ENSBIXG00005027464	ACBD3 (ENSBIXG00005027541) #19	ENSBIXG00005027583 ##20	SDE2 (ENSBIXG00005027604) #21	ENSBIXG00005027638 #22	PYCR2 (ENSBIXG00005004750) #23	ENSBIXG00005004759 #22	TMEM63A (ENSBIXG00005027791) #25	EPHX1 (ENSBIXG00005027913) #26	SRP9 (ENSBIXG00005027974) #37	ENAH (ENSBIXG00005028092) #34	LBR (ENSBIXG00005028146)	DNAH14 (ENSBIXG00005004917) #32	CNIH3 (ENSBIXG00005028617) #31	WDR26 (ENSBIXG00005002380) #30	CNIH4 (ENSBIXG00005002358) #29	DEGS1 (ENSBIXG00005028737) #27	NVL (ENSBIXG00005028887) #28	FBXO28 (ENSBIXG00005028929)	TP53BP2 (ENSBIXG00005002081)	CAPN2 (ENSBIXG00005029036)	CAPN8 (ENSBIXG00005005137)
Bos_a	ANCESTRAL SPECIES	8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Domestic yak	MODERN SPECIES	5	COQ8A (ENSBGRG00000005906) #12	PSEN2 (ENSBGRG00000005715) #13	ITPKB (ENSBGRG00000005683) #14	ENSBGRG00000005664 #15	PARP1 (ENSBGRG00000005223) #16	LIN9 (ENSBGRG00000005002) #17	MIXL1 (ENSBGRG00000004952) #18	ENSBGRG00000004942	ACBD3 (ENSBGRG00000004916) #19	ENSBGRG00000004896	H3-3A (ENSBGRG00000004866) ##20	ENSBGRG00000004846	SDE2 (ENSBGRG00000004760) #21	ENSBGRG00000004709 #22	PYCR2 (ENSBGRG00000004674) #23	ENSBGRG00000004607 #22	TMEM63A (ENSBGRG00000004465) #25	EPHX1 (ENSBGRG00000004302) #26	SRP9 (ENSBGRG00000004171) #37	ENAH (ENSBGRG00000003960) #34	LBR (ENSBGRG00000003827)	ENSBGRG00000003785 #32	ENSBGRG00000003740 #32	ENSBGRG00000003672	CNIH3 (ENSBGRG00000011424) #31	WDR26 (ENSBGRG00000011013) #30	CNIH4 (ENSBGRG00000010701) #29	NVL (ENSBGRG00000010007) #28	DEGS1 (ENSBGRG00000009888) #27	FBXO28 (ENSBGRG00000009777)	TP53BP2 (ENSBGRG00000009682)
Wild yak	MODERN SPECIES	1552																ENSBMUG00000006287 #22	TMEM63A (ENSBMUG00000006305) #25	EPHX1 (ENSBMUG00000006359) #26	SRP9 (ENSBMUG00000006383) #37	ENAH (ENSBMUG00000006434) #34	LBR (ENSBMUG00000006450)	DNAH14 (ENSBMUG00000006523) #32	CNIH3 (ENSBMUG00000006554) #31	WDR26 (ENSBMUG00000006567) #30	CNIH4 (ENSBMUG00000006608) #29	NVL (ENSBMUG00000006678) #28	DEGS1 (ENSBMUG00000006787) #27	ENSBMUG00000006795	TP53BP2 (ENSBMUG00000006820)	CAPN2 (ENSBMUG00000006868)	CAPN8 (ENSBMUG00000006928)
American bison	MODERN SPECIES	3231	AHCTF1 (ENSBBBG00000011807) #10	CDC42BPA (ENSBBBG00000012129) #11	COQ8A (ENSBBBG00000012196) #12	PSEN2 (ENSBBBG00000012223) #13	ITPKB (ENSBBBG00000012230) #14	STUM (ENSBBBG00000012244) #15	ENSBBBG00000012249	PARP1 (ENSBBBG00000012265) #16	LIN9 (ENSBBBG00000002326) #17	ENSBBBG00000001928	ACBD3 (ENSBBBG00000012298) #19	ENSBBBG00000012307 ##20	SDE2 (ENSBBBG00000012313) #21	ENSBBBG00000012320 #22	PYCR2 (ENSBBBG00000012333) #23	ENSBBBG00000012339 #22	TMEM63A (ENSBBBG00000012352) #25	EPHX1 (ENSBBBG00000002344) #26	SRP9 (ENSBBBG00000002346) #37	ENAH (ENSBBBG00000002368) #34	LBR (ENSBBBG00000012450)	DNAH14 (ENSBBBG00000007448) #32	CNIH3 (ENSBBBG00000002423) #31	ENSBBBG00000012622	WDR26 (ENSBBBG00000012642) #30	CNIH4 (ENSBBBG00000012671) #29	NVL (ENSBBBG00000002471) #28	DEGS1 (ENSBBBG00000012791) #27	FBXO28 (ENSBBBG00000012804)	TP53BP2 (ENSBBBG00000001782)	CAPN2 (ENSBBBG00000007450)
Bovidae	ANCESTRAL SPECIES	15	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970
Caprinae	ANCESTRAL SPECIES	12	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Goat	MODERN SPECIES	7	AHCTF1 (ENSCHIG00000023392) #10	ENSCHIG00000010278	CDC42BPA (ENSCHIG00000021878) #11	COQ8A (ENSCHIG00000012633) #12	PSEN2 (ENSCHIG00000025180) #13	ITPKB (ENSCHIG00000016348) #14	STUM (ENSCHIG00000026813) #15	PARP1 (ENSCHIG00000018072) #16	LIN9 (ENSCHIG00000003005) #17	MIXL1 (ENSCHIG00000017640) #18	ACBD3 (ENSCHIG00000010539) #19	ENSCHIG00000021907 ##20	ENSCHIG00000013022	SDE2 (ENSCHIG00000022358) #21	ENSCHIG00000016605	ENSCHIG00000010623 #22	PYCR2 (ENSCHIG00000022032) #23	ENSCHIG00000017375 #22	TMEM63A (ENSCHIG00000026549) #25	EPHX1 (ENSCHIG00000017919) #26	SRP9 (ENSCHIG00000006407) #37	ENSCHIG00000004057	ENSCHIG00000000542	ENAH (ENSCHIG00000022407) #34	LBR (ENSCHIG00000013607)	DNAH14 (ENSCHIG00000021801) #32	CNIH3 (ENSCHIG00000015311) #31	ENSCHIG00000008380	WDR26 (ENSCHIG00000020527) #30	CNIH4 (ENSCHIG00000014392) #29	NVL (ENSCHIG00000001224) #28
Rambouillet Sheep	MODERN SPECIES	3	ENSOARG00020003854 ##20	SCCPDH (ENSOARG00020003810) #8	ENSOARG00020003724 #9	AHCTF1 (ENSOARG00020003268) #10	CDC42BPA (ENSOARG00020019926) #11	COQ8A (ENSOARG00020019681) #12	PSEN2 (ENSOARG00020019535) #13	ITPKB (ENSOARG00020019465) #14	STUM (ENSOARG00020019418) #15	PARP1 (ENSOARG00020019277) #16	LIN9 (ENSOARG00020018902) #17	MIXL1 (ENSOARG00020018842) #18	ACBD3 (ENSOARG00020018756) #19	H3F3A (ENSOARG00020018672) #20	SDE2 (ENSOARG00020018625) #21	ENSOARG00020018575 #22	PYCR2 (ENSOARG00020018457) #23	ENSOARG00020018411 #22	TMEM63A (ENSOARG00020018308) #25	EPHX1 (ENSOARG00020018225) #26	SRP9 (ENSOARG00020018121) #37	ENSOARG00020018102	ENSOARG00020018058 #34	ENAH (ENSOARG00020017437) #34	LBR (ENSOARG00020017338)	ENSOARG00020017311	DNAH14 (ENSOARG00020016617) #32	CNIH3 (ENSOARG00020016440) #31	ENSOARG00020016393	WDR26 (ENSOARG00020016098) #30	CNIH4 (ENSOARG00020015970) #29
Bovinae	ANCESTRAL SPECIES	12	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970
Bos	ANCESTRAL SPECIES	12	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970
Bos_a	ANCESTRAL SPECIES	8	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970
Domestic yak	MODERN SPECIES	5	AHCTF1 (ENSBGRG00000006477) #10	CDC42BPA (ENSBGRG00000006051) #11	COQ8A (ENSBGRG00000005906) #12	PSEN2 (ENSBGRG00000005715) #13	ITPKB (ENSBGRG00000005683) #14	ENSBGRG00000005664 #15	PARP1 (ENSBGRG00000005223) #16	LIN9 (ENSBGRG00000005002) #17	MIXL1 (ENSBGRG00000004952) #18	ENSBGRG00000004942	ACBD3 (ENSBGRG00000004916) #19	ENSBGRG00000004896	H3-3A (ENSBGRG00000004866) ##20	ENSBGRG00000004846	SDE2 (ENSBGRG00000004760) #21	ENSBGRG00000004709 #22	PYCR2 (ENSBGRG00000004674) #23	ENSBGRG00000004607 #22	TMEM63A (ENSBGRG00000004465) #25	EPHX1 (ENSBGRG00000004302) #26	SRP9 (ENSBGRG00000004171) #37	ENAH (ENSBGRG00000003960) #34	LBR (ENSBGRG00000003827)	ENSBGRG00000003785 #32	ENSBGRG00000003740 #32	ENSBGRG00000003672	CNIH3 (ENSBGRG00000011424) #31	WDR26 (ENSBGRG00000011013) #30	CNIH4 (ENSBGRG00000010701) #29	NVL (ENSBGRG00000010007) #28	DEGS1 (ENSBGRG00000009888) #27
Wild yak	MODERN SPECIES	1893										ENSBMUG00000014506 #16	LIN9 (ENSBMUG00000015437) #17	MIXL1 (ENSBMUG00000015459) #18	ACBD3 (ENSBMUG00000015476) #19	ENSBMUG00000015502 #20	SDE2 (ENSBMUG00000015514) #21	ENSBMUG00000015525 #22	PYCR2 (ENSBMUG00000015566) #23
Bos_b	ANCESTRAL SPECIES	9	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Cow	MODERN SPECIES	7	ENSBTAG00000049714 #9	AHCTF1 (ENSBTAG00000013949) #10	CDC42BPA (ENSBTAG00000022777) #11	COQ8A (ENSBTAG00000021880) #12	PSEN2 (ENSBTAG00000013197) #13	ITPKB (ENSBTAG00000053007) #14	ENSBTAG00000033252	STUM (ENSBTAG00000024560) #15	ENSBTAG00000047233	PARP1 (ENSBTAG00000000837) #16	LIN9 (ENSBTAG00000033267) #17	MIXL1 (ENSBTAG00000002139) #18	ACBD3 (ENSBTAG00000013128) #19	H3-3A (ENSBTAG00000024561) ##20	SDE2 (ENSBTAG00000012787) #21	ENSBTAG00000054752 #22	PYCR2 (ENSBTAG00000005835) #23	LEFTY2 (ENSBTAG00000055022) #22	TMEM63A (ENSBTAG00000002854) #25	EPHX1 (ENSBTAG00000000140) #26	SRP9 (ENSBTAG00000033322) #37	ENAH (ENSBTAG00000016185) #34	LBR (ENSBTAG00000008453)	DNAH14 (ENSBTAG00000008449) #32	CNIH3 (ENSBTAG00000053199) #31	WDR26 (ENSBTAG00000011785) #30	CNIH4 (ENSBTAG00000019471) #29	NVL (ENSBTAG00000006718) #28	DEGS1 (ENSBTAG00000012705) #27	FBXO28 (ENSBTAG00000019538)	TP53BP2 (ENSBTAG00000012781)
Hybrid Bos Indicus	MODERN SPECIES	7	AHCTF1 (ENSBIXG00005026527) #10	CDC42BPA (ENSBIXG00005026924) #11	COQ8A (ENSBIXG00005027082) #12	PSEN2 (ENSBIXG00005004681) #13	ITPKB (ENSBIXG00005027239) #14	ENSBIXG00005027257	ENSBIXG00005027292 #15	ENSBIXG00005007774	PARP1 (ENSBIXG00005027371) #16	LIN9 (ENSBIXG00005027424) #17	MIXL1 (ENSBIXG00005027457) #18	ENSBIXG00005027464	ACBD3 (ENSBIXG00005027541) #19	ENSBIXG00005027583 ##20	SDE2 (ENSBIXG00005027604) #21	ENSBIXG00005027638 #22	PYCR2 (ENSBIXG00005004750) #23	ENSBIXG00005004759 #22	TMEM63A (ENSBIXG00005027791) #25	EPHX1 (ENSBIXG00005027913) #26	SRP9 (ENSBIXG00005027974) #37	ENAH (ENSBIXG00005028092) #34	LBR (ENSBIXG00005028146)	DNAH14 (ENSBIXG00005004917) #32	CNIH3 (ENSBIXG00005028617) #31	WDR26 (ENSBIXG00005002380) #30	CNIH4 (ENSBIXG00005002358) #29	DEGS1 (ENSBIXG00005028737) #27	NVL (ENSBIXG00005028887) #28	FBXO28 (ENSBIXG00005028929)	TP53BP2 (ENSBIXG00005002081)
American bison	MODERN SPECIES	3231	SCCPDH (ENSBBBG00000011719) #8	ENSBBBG00000002173 #9	AHCTF1 (ENSBBBG00000011807) #10	CDC42BPA (ENSBBBG00000012129) #11	COQ8A (ENSBBBG00000012196) #12	PSEN2 (ENSBBBG00000012223) #13	ITPKB (ENSBBBG00000012230) #14	STUM (ENSBBBG00000012244) #15	ENSBBBG00000012249	PARP1 (ENSBBBG00000012265) #16	LIN9 (ENSBBBG00000002326) #17	ENSBBBG00000001928	ACBD3 (ENSBBBG00000012298) #19	ENSBBBG00000012307 ##20	SDE2 (ENSBBBG00000012313) #21	ENSBBBG00000012320 #22	PYCR2 (ENSBBBG00000012333) #23	ENSBBBG00000012339 #22	TMEM63A (ENSBBBG00000012352) #25	EPHX1 (ENSBBBG00000002344) #26	SRP9 (ENSBBBG00000002346) #37	ENAH (ENSBBBG00000002368) #34	LBR (ENSBBBG00000012450)	DNAH14 (ENSBBBG00000007448) #32	CNIH3 (ENSBBBG00000002423) #31	ENSBBBG00000012622	WDR26 (ENSBBBG00000012642) #30	CNIH4 (ENSBBBG00000012671) #29	NVL (ENSBBBG00000002471) #28	DEGS1 (ENSBBBG00000012791) #27	FBXO28 (ENSBBBG00000012804)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	188				PARP1 (ENSMMSG00000019082) #16	LIN9 (ENSMMSG00000019171) #17	MIXL1 (ENSMMSG00000019256) #18	ENSMMSG00000019292	ENSMMSG00000019312	ENSMMSG00000019330	ACBD3 (ENSMMSG00000019345) #19	ENSMMSG00000019373 ##20	SDE2 (ENSMMSG00000019388) #21	ENSMMSG00000019422	ENSMMSG00000019436 #22	PYCR2 (ENSMMSG00000019466) #23	ENSMMSG00000019519 #22	TMEM63A (ENSMMSG00000019545) #25	EPHX1 (ENSMMSG00000019599) #26	SRP9 (ENSMMSG00000019636) #37	ENAH (ENSMMSG00000019676) #34	LBR (ENSMMSG00000019704)	DNAH14 (ENSMMSG00000019767) #32	CNIH3 (ENSMMSG00000020039) #31	WDR26 (ENSMMSG00000020076) #30	ENSMMSG00000020244 #29	NVL (ENSMMSG00000020360) #28	ENSMMSG00000020522	DEGS1 (ENSMMSG00000020549) #27	FBXO28 (ENSMMSG00000020579)	ENSMMSG00000020616	TP53BP2 (ENSMMSG00000020632)
Siberian musk deer	MODERN SPECIES	188						PARP1 (ENSMMSG00000019082) #16	LIN9 (ENSMMSG00000019171) #17	MIXL1 (ENSMMSG00000019256) #18	ENSMMSG00000019292	ENSMMSG00000019312	ENSMMSG00000019330	ACBD3 (ENSMMSG00000019345) #19	ENSMMSG00000019373 ##20	SDE2 (ENSMMSG00000019388) #21	ENSMMSG00000019422	ENSMMSG00000019436 #22	PYCR2 (ENSMMSG00000019466) #23	ENSMMSG00000019519 #22	TMEM63A (ENSMMSG00000019545) #25	EPHX1 (ENSMMSG00000019599) #26	SRP9 (ENSMMSG00000019636) #37	ENAH (ENSMMSG00000019676) #34	LBR (ENSMMSG00000019704)	DNAH14 (ENSMMSG00000019767) #32	CNIH3 (ENSMMSG00000020039) #31	WDR26 (ENSMMSG00000020076) #30	ENSMMSG00000020244 #29	NVL (ENSMMSG00000020360) #28	ENSMMSG00000020522	DEGS1 (ENSMMSG00000020549) #27	FBXO28 (ENSMMSG00000020579)
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	5	AHCTF1 (ENSCHYG00000011282) #10	ENSCHYG00000011242	CDC42BPA (ENSCHYG00000010016) #11	COQ8A (ENSCHYG00000009793) #12	PSEN2 (ENSCHYG00000009644) #13	ITPKB (ENSCHYG00000009603) #14	ENSCHYG00000009567 #15	PARP1 (ENSCHYG00000009348) #16	LIN9 (ENSCHYG00000009023) #17	MIXL1 (ENSCHYG00000008961) #18	ACBD3 (ENSCHYG00000008896) #19	ENSCHYG00000008774 ##20	SDE2 (ENSCHYG00000008711) #21	ENSCHYG00000008669 #22	PYCR2 (ENSCHYG00000008616) #23	ENSCHYG00000008576 #22	TMEM63A (ENSCHYG00000008498) #25	EPHX1 (ENSCHYG00000008370) #26	ENAH (ENSCHYG00000008178) #34	LBR (ENSCHYG00000008100)	DNAH14 (ENSCHYG00000007743) #32	ENSCHYG00000007691	ENSCHYG00000007678	CNIH3 (ENSCHYG00000007606) #31	ENSCHYG00000007572	WDR26 (ENSCHYG00000007505) #30	CNIH4 (ENSCHYG00000007424) #29	ENSCHYG00000007273 #28	DEGS1 (ENSCHYG00000007227) #27	FBXO28 (ENSCHYG00000007189)	TP53BP2 (ENSCHYG00000006921)
Yarkand deer	MODERN SPECIES	5	ENSCHYG00000011947 #8	ENSCHYG00000011764 #9	AHCTF1 (ENSCHYG00000011282) #10	ENSCHYG00000011242	CDC42BPA (ENSCHYG00000010016) #11	COQ8A (ENSCHYG00000009793) #12	PSEN2 (ENSCHYG00000009644) #13	ITPKB (ENSCHYG00000009603) #14	ENSCHYG00000009567 #15	PARP1 (ENSCHYG00000009348) #16	LIN9 (ENSCHYG00000009023) #17	MIXL1 (ENSCHYG00000008961) #18	ACBD3 (ENSCHYG00000008896) #19	ENSCHYG00000008774 ##20	SDE2 (ENSCHYG00000008711) #21	ENSCHYG00000008669 #22	PYCR2 (ENSCHYG00000008616) #23	ENSCHYG00000008576 #22	TMEM63A (ENSCHYG00000008498) #25	EPHX1 (ENSCHYG00000008370) #26	ENAH (ENSCHYG00000008178) #34	LBR (ENSCHYG00000008100)	DNAH14 (ENSCHYG00000007743) #32	ENSCHYG00000007691	ENSCHYG00000007678	CNIH3 (ENSCHYG00000007606) #31	ENSCHYG00000007572	WDR26 (ENSCHYG00000007505) #30	CNIH4 (ENSCHYG00000007424) #29	ENSCHYG00000007273 #28	DEGS1 (ENSCHYG00000007227) #27
Camelidae	ANCESTRAL SPECIES	42	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	15	SCCPDH (ENSCDRG00005009923) #8	ENSCDRG00005009657 #9	AHCTF1 (ENSCDRG00005008653) #10	CDC42BPA (ENSCDRG00005004650) #11	COQ8A (ENSCDRG00005004392) #12	PSEN2 (ENSCDRG00005004293) #13	ITPKB (ENSCDRG00005004264) #14	STUM (ENSCDRG00005004232) #15	PARP1 (ENSCDRG00005004094) #16	LIN9 (ENSCDRG00005003856) #17	MIXL1 (ENSCDRG00005003819) #18	ACBD3 (ENSCDRG00005003797) #19	ENSCDRG00005003780	ENSCDRG00005003751 ##20	SDE2 (ENSCDRG00005003707) #21	ENSCDRG00005003588 #22	PYCR2 (ENSCDRG00005020074) #23	ENSCDRG00005020045 #22	TMEM63A (ENSCDRG00005020005) #25	EPHX1 (ENSCDRG00005019981) #26	SRP9 (ENSCDRG00005019952) #37	ENSCDRG00005019933	ENAH (ENSCDRG00005019805) #34	LBR (ENSCDRG00005019758)	DNAH14 (ENSCDRG00005019610) #32	CNIH3 (ENSCDRG00005019575) #31	WDR26 (ENSCDRG00005019563) #30	CNIH4 (ENSCDRG00005019545) #29	NVL (ENSCDRG00005019414) #28	DEGS1 (ENSCDRG00005019393) #27	FBXO28 (ENSCDRG00005019370)
Arabian camel	MODERN SPECIES	15	AHCTF1 (ENSCDRG00005008653) #10	CDC42BPA (ENSCDRG00005004650) #11	COQ8A (ENSCDRG00005004392) #12	PSEN2 (ENSCDRG00005004293) #13	ITPKB (ENSCDRG00005004264) #14	STUM (ENSCDRG00005004232) #15	PARP1 (ENSCDRG00005004094) #16	LIN9 (ENSCDRG00005003856) #17	MIXL1 (ENSCDRG00005003819) #18	ACBD3 (ENSCDRG00005003797) #19	ENSCDRG00005003780	ENSCDRG00005003751 ##20	SDE2 (ENSCDRG00005003707) #21	ENSCDRG00005003588 #22	PYCR2 (ENSCDRG00005020074) #23	ENSCDRG00005020045 #22	TMEM63A (ENSCDRG00005020005) #25	EPHX1 (ENSCDRG00005019981) #26	SRP9 (ENSCDRG00005019952) #37	ENSCDRG00005019933	ENAH (ENSCDRG00005019805) #34	LBR (ENSCDRG00005019758)	DNAH14 (ENSCDRG00005019610) #32	CNIH3 (ENSCDRG00005019575) #31	WDR26 (ENSCDRG00005019563) #30	CNIH4 (ENSCDRG00005019545) #29	NVL (ENSCDRG00005019414) #28	DEGS1 (ENSCDRG00005019393) #27	FBXO28 (ENSCDRG00005019370)	TP53BP2 (ENSCDRG00005019295)	CAPN2 (ENSCDRG00005019228)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Carnivora	ANCESTRAL SPECIES	14	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Caniformia	ANCESTRAL SPECIES	10	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00940000161841.n	ENSGT00390000002970
Ursidae	ANCESTRAL SPECIES	4	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00940000161841.n	ENSGT00390000002970
Ursus	ANCESTRAL SPECIES	90	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505.u #32	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00940000161841.n	ENSGT00390000002970
American black bear	MODERN SPECIES	870																ENSUAMG00000028421 #22	PYCR2 (ENSUAMG00000028420) #23	TMEM63A (ENSUAMG00000028419) #25	EPHX1 (ENSUAMG00000028418) #26
Giant Panda	MODERN SPECIES	18	CNST (ENSAMEG00000006589) #7	SCCPDH (ENSAMEG00000006562) #8	ENSAMEG00000029183 #9	ENSAMEG00000006501 #10	ENSAMEG00000008890 #11	COQ8A (ENSAMEG00000009019) #12	PSEN2 (ENSAMEG00000009070) #13	ITPKB (ENSAMEG00000009097) #14	STUM (ENSAMEG00000009117) #15	PARP1 (ENSAMEG00000014451) #16	LIN9 (ENSAMEG00000014535) #17	MIXL1 (ENSAMEG00000014565) #18	ACBD3 (ENSAMEG00000014568) #19	ENSAMEG00000029116 ##20	SDE2 (ENSAMEG00000014591) #21	ENSAMEG00000014607 #22	PYCR2 (ENSAMEG00000014626) #23	TMEM63A (ENSAMEG00000014638) #25	EPHX1 (ENSAMEG00000027522) #26	SRP9 (ENSAMEG00000014710) #37	ENAH (ENSAMEG00000015746) #34	LBR (ENSAMEG00000015778)	DNAH14 (ENSAMEG00000015805) #32	CNIH3 (ENSAMEG00000024773) #31	WDR26 (ENSAMEG00000015955) #30	CNIH4 (ENSAMEG00000015944) #29	NVL (ENSAMEG00000015910) #28	DEGS1 (ENSAMEG00000015906) #27	ENSAMEG00000029292	FBXO28 (ENSAMEG00000015894)	TP53BP2 (ENSAMEG00000015840)
Mustelinae	ANCESTRAL SPECIES	51	ENSGT00940000159554	ENSGT01030000234618.B	ENSGT00390000013877	ENSGT00940000155161	ENSGT00390000008829	ENSGT00520000059630	ENSGT00940000162785	ENSGT00550000074794	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00940000161841.n	ENSGT00390000002970	ENSGT00940000153463.b
American mink	DUPLICATION
American mink	MODERN SPECIES	73	ZBTB37 (ENSNVIG00000014530)	DARS2 (ENSNVIG00000014589)	CENPL (ENSNVIG00000014636)	KLHL20 (ENSNVIG00000014655)	ANKRD45 (ENSNVIG00000014684)	TEX50 (ENSNVIG00000014691)	SLC9C2 (ENSNVIG00000014705)	PRDX6 (ENSNVIG00000014746)	ITPKB (ENSNVIG00000014754) #14	STUM (ENSNVIG00000014784) #15	PARP1 (ENSNVIG00000014805) #16	LIN9 (ENSNVIG00000014864) #17	ACBD3 (ENSNVIG00000014901) #19	ENSNVIG00000014926 ##20	SDE2 (ENSNVIG00000014947) #21	ENSNVIG00000014955 #22	PYCR2 (ENSNVIG00000014966) #23	ENSNVIG00000015022 #22	TMEM63A (ENSNVIG00000015042) #25	EPHX1 (ENSNVIG00000015107) #26	SRP9 (ENSNVIG00000015125) #37	ENAH (ENSNVIG00000015156) #34	LBR (ENSNVIG00000015260)	DNAH14 (ENSNVIG00000015327) #32	CNIH3 (ENSNVIG00000015610) #31	WDR26 (ENSNVIG00000015630) #30	CNIH4 (ENSNVIG00000015648) #29	NVL (ENSNVIG00000015670) #28	DEGS1 (ENSNVIG00000015892) #27	ENSNVIG00000015907	ENSNVIG00000015922
American mink	MODERN SPECIES	73	CENPL (ENSNVIG00000014636)	KLHL20 (ENSNVIG00000014655)	ANKRD45 (ENSNVIG00000014684)	TEX50 (ENSNVIG00000014691)	SLC9C2 (ENSNVIG00000014705)	PRDX6 (ENSNVIG00000014746)	ITPKB (ENSNVIG00000014754) #14	STUM (ENSNVIG00000014784) #15	PARP1 (ENSNVIG00000014805) #16	LIN9 (ENSNVIG00000014864) #17	ACBD3 (ENSNVIG00000014901) #19	ENSNVIG00000014926 ##20	SDE2 (ENSNVIG00000014947) #21	ENSNVIG00000014955 #22	PYCR2 (ENSNVIG00000014966) #23	ENSNVIG00000015022 #22	TMEM63A (ENSNVIG00000015042) #25	EPHX1 (ENSNVIG00000015107) #26	SRP9 (ENSNVIG00000015125) #37	ENAH (ENSNVIG00000015156) #34	LBR (ENSNVIG00000015260)	DNAH14 (ENSNVIG00000015327) #32	CNIH3 (ENSNVIG00000015610) #31	WDR26 (ENSNVIG00000015630) #30	CNIH4 (ENSNVIG00000015648) #29	NVL (ENSNVIG00000015670) #28	DEGS1 (ENSNVIG00000015892) #27	ENSNVIG00000015907	ENSNVIG00000015922	TP53BP2 (ENSNVIG00000015939)	CAPN2 (ENSNVIG00000015965)
Ferret	MODERN SPECIES	246	ZBTB37 (ENSMPUG00000004728)	DARS2 (ENSMPUG00000004716)	CENPL (ENSMPUG00000004707)	KLHL20 (ENSMPUG00000004695)	ANKRD45 (ENSMPUG00000004688)	SLC9C2 (ENSMPUG00000004656)	PRDX6 (ENSMPUG00000004648)	ENSMPUG00000018474	ITPKB (ENSMPUG00000004596) #14	PARP1 (ENSMPUG00000004585) #16	LIN9 (ENSMPUG00000004573) #17	ACBD3 (ENSMPUG00000004563) #19	ENSMPUG00000004555 ##20	SDE2 (ENSMPUG00000004543) #21	ENSMPUG00000004540	ENSMPUG00000004487 #22	PYCR2 (ENSMPUG00000004479) #23	TMEM63A (ENSMPUG00000004462) #25	ENSMPUG00000004459	EPHX1 (ENSMPUG00000004409) #26	ENAH (ENSMPUG00000004394) #34	LBR (ENSMPUG00000004384)	ENSMPUG00000004174 #32	CNIH3 (ENSMPUG00000004163) #31	WDR26 (ENSMPUG00000004049) #30	NVL (ENSMPUG00000004031) #28	DEGS1 (ENSMPUG00000004010) #27	FBXO28 (ENSMPUG00000004002)	ENSMPUG00000003995	TP53BP2 (ENSMPUG00000003981)	CAPN2 (ENSMPUG00000003968)
Canidae	ANCESTRAL SPECIES	1	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000182891.a.a.b.a.a.a.b.a.a.x.a	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00390000004799 #8	ENSGT00950000183029.B.c.b.b.b.i.b	ENSGT00940000178689	ENSGT00390000018900 #10	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT01030000238203	ENSGT00390000000411.g.b	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00390000000412	ENSGT00950000183123.g.a.a.b	ENSGT00950000182891.a.a.b.a.a.a.b.a.a.x.a	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27
Dog	DUPLICATION
Dog	MODERN SPECIES	35	ENSCAFG00845006225 #9	AHCTF1 (ENSCAFG00845006427) #10	CDC42BPA (ENSCAFG00845007016) #11	ENSCAFG00845007754	COQ8A (ENSCAFG00845007817) #12	PSEN2 (ENSCAFG00845008023) #13	ITPKB (ENSCAFG00845008212) #14	STUM (ENSCAFG00845008283) #15	PARP1 (ENSCAFG00845008325) #16	LIN9 (ENSCAFG00845008477) #17	MIXL1 (ENSCAFG00845008836) #18	ENSCAFG00845008860	ACBD3 (ENSCAFG00845008884) #19	ENSCAFG00845008917 #20	SDE2 (ENSCAFG00845008939) #21	ENSCAFG00845008972 #22	ENSCAFG00845009009	PYCR2 (ENSCAFG00845009034) #23	ENSCAFG00845009114 #22	TMEM63A (ENSCAFG00845009155) #25	EPHX1 (ENSCAFG00845009397) #26	SRP9 (ENSCAFG00845009505) #37	ENAH (ENSCAFG00845009892) #34	LBR (ENSCAFG00845010980)	DNAH14 (ENSCAFG00845011498) #32	ENSCAFG00845012247	ENSCAFG00845012260	CNIH3 (ENSCAFG00845012278) #31	WDR26 (ENSCAFG00845012382) #30	CNIH4 (ENSCAFG00845012452) #29	NVL (ENSCAFG00845012656) #28
Dog	MODERN SPECIES	35	ENSCAFG00845007754	COQ8A (ENSCAFG00845007817) #12	PSEN2 (ENSCAFG00845008023) #13	ITPKB (ENSCAFG00845008212) #14	STUM (ENSCAFG00845008283) #15	PARP1 (ENSCAFG00845008325) #16	LIN9 (ENSCAFG00845008477) #17	MIXL1 (ENSCAFG00845008836) #18	ENSCAFG00845008860	ACBD3 (ENSCAFG00845008884) #19	ENSCAFG00845008917 #20	SDE2 (ENSCAFG00845008939) #21	ENSCAFG00845008972 #22	ENSCAFG00845009009	PYCR2 (ENSCAFG00845009034) #23	ENSCAFG00845009114 #22	TMEM63A (ENSCAFG00845009155) #25	EPHX1 (ENSCAFG00845009397) #26	SRP9 (ENSCAFG00845009505) #37	ENAH (ENSCAFG00845009892) #34	LBR (ENSCAFG00845010980)	DNAH14 (ENSCAFG00845011498) #32	ENSCAFG00845012247	ENSCAFG00845012260	CNIH3 (ENSCAFG00845012278) #31	WDR26 (ENSCAFG00845012382) #30	CNIH4 (ENSCAFG00845012452) #29	NVL (ENSCAFG00845012656) #28	ENSCAFG00845012857	DEGS1 (ENSCAFG00845012915) #27	FBXO28 (ENSCAFG00845012940)
Dingo	MODERN SPECIES	271	AHCTF1 (ENSCAFG00020001201) #10	ENSCAFG00020001339 #11	ENSCAFG00020001351 #11	CDC42BPA (ENSCAFG00020001364) #11	COQ8A (ENSCAFG00020001368) #12	PSEN2 (ENSCAFG00020001399) #13	ITPKB (ENSCAFG00020001406) #14	STUM (ENSCAFG00020001421) #15	PARP1 (ENSCAFG00020001660) #16	LIN9 (ENSCAFG00020003192) #17	ENSCAFG00020003200	ENSCAFG00020003202	ACBD3 (ENSCAFG00020003210) #19	ENSCAFG00020003228 ##20	SDE2 (ENSCAFG00020003247) #21	ENSCAFG00020003248 #22	PYCR2 (ENSCAFG00020003264) #23	TMEM63A (ENSCAFG00020003274) #25	EPHX1 (ENSCAFG00020003279) #26	SRP9 (ENSCAFG00020003285) #37	ENAH (ENSCAFG00020003296) #34	LBR (ENSCAFG00020003321)	ENSCAFG00020003326 #32	ENSCAFG00020003333 #32	ENSCAFG00020003357	ENSCAFG00020003361	ENSCAFG00020003365	CNIH3 (ENSCAFG00020003397) #31	WDR26 (ENSCAFG00020003429) #30	CNIH4 (ENSCAFG00020003678) #29	NVL (ENSCAFG00020003680) #28
Felidae	ANCESTRAL SPECIES	11	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Panthera	ANCESTRAL SPECIES	19	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a.v #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Panthera_a	ANCESTRAL SPECIES	19	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a.v #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
leopard	DUPLICATION
leopard	MODERN SPECIES	4	TFB2M (ENSPPRG00000007350)	CNST (ENSPPRG00000008188) #7	SCCPDH (ENSPPRG00000008599) #8	ENSPPRG00000009605 #9	CDC42BPA (ENSPPRG00000024128) #11	COQ8A (ENSPPRG00000022935) #12	PSEN2 (ENSPPRG00000002017) #13	ITPKB (ENSPPRG00000002311) #14	STUM (ENSPPRG00000002817) #15	PARP1 (ENSPPRG00000003528) #16	LIN9 (ENSPPRG00000003816) #17	MIXL1 (ENSPPRG00000004369) #18	ENSPPRG00000004470 #19	H3-3A (ENSPPRG00000004900) ##20	SDE2 (ENSPPRG00000005139) #21	ENSPPRG00000006189 #22	PYCR2 (ENSPPRG00000008433) #23	ENSPPRG00000008898 #22	TMEM63A (ENSPPRG00000010133) #25	EPHX1 (ENSPPRG00000011566) #26	SRP9 (ENSPPRG00000011732) #37	ENAH (ENSPPRG00000015078) #34	LBR (ENSPPRG00000018166)	DNAH14 (ENSPPRG00000006163) #32
leopard	MODERN SPECIES	4	SCCPDH (ENSPPRG00000008599) #8	ENSPPRG00000009605 #9	CDC42BPA (ENSPPRG00000024128) #11	COQ8A (ENSPPRG00000022935) #12	PSEN2 (ENSPPRG00000002017) #13	ITPKB (ENSPPRG00000002311) #14	STUM (ENSPPRG00000002817) #15	PARP1 (ENSPPRG00000003528) #16	LIN9 (ENSPPRG00000003816) #17	MIXL1 (ENSPPRG00000004369) #18	ENSPPRG00000004470 #19	H3-3A (ENSPPRG00000004900) ##20	SDE2 (ENSPPRG00000005139) #21	ENSPPRG00000006189 #22	PYCR2 (ENSPPRG00000008433) #23	ENSPPRG00000008898 #22	TMEM63A (ENSPPRG00000010133) #25	EPHX1 (ENSPPRG00000011566) #26	SRP9 (ENSPPRG00000011732) #37	ENAH (ENSPPRG00000015078) #34	LBR (ENSPPRG00000018166)	DNAH14 (ENSPPRG00000006163) #32
lion	MODERN SPECIES	464																ENSPLOG00000019030 #22
Cat	MODERN SPECIES	248	TFB2M (ENSFCAG00000021951)	CNST (ENSFCAG00000028075) #7	SCCPDH (ENSFCAG00000010642) #8	ENSFCAG00000024485 #9	AHCTF1 (ENSFCAG00000014392) #10	CDC42BPA (ENSFCAG00000008784) #11	COQ8A (ENSFCAG00000044578) #12	PSEN2 (ENSFCAG00000008781) #13	ITPKB (ENSFCAG00000025620) #14	STUM (ENSFCAG00000043992) #15	PARP1 (ENSFCAG00000005777) #16	LIN9 (ENSFCAG00000010528) #17	ACBD3 (ENSFCAG00000030208) #19	SDE2 (ENSFCAG00000015082) #21	PYCR2 (ENSFCAG00000012541) #23	ENSFCAG00000039160 #22	TMEM63A (ENSFCAG00000044147) #25	EPHX1 (ENSFCAG00000006965) #26	SRP9 (ENSFCAG00000010275) #37	ENAH (ENSFCAG00000028416) #34	DNAH14 (ENSFCAG00000023988) #32	CNIH3 (ENSFCAG00000014101) #31	WDR26 (ENSFCAG00000002464) #30	CNIH4 (ENSFCAG00000038772) #29	NVL (ENSFCAG00000009876) #28	DEGS1 (ENSFCAG00000000202) #27	FBXO28 (ENSFCAG00000022457)	TP53BP2 (ENSFCAG00000010673)	CAPN2 (ENSFCAG00000010671)	ENSFCAG00000010669	CCDC185 (ENSFCAG00000050667)
Laurasiatheria_c	ANCESTRAL SPECIES	25	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Chiroptera	ANCESTRAL SPECIES	30	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000178689	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Megabat	DUPLICATION
Megabat	MODERN SPECIES	1071														ENSPVAG00000004797 ##20	SDE2 (ENSPVAG00000004796) #21	ENSPVAG00000004795 #22	PYCR2 (ENSPVAG00000004794) #23	ENSPVAG00000004790 #22	TMEM63A (ENSPVAG00000004786) #25	EPHX1 (ENSPVAG00000004784) #26
Megabat	MODERN SPECIES	1071												ENSPVAG00000004797 ##20	SDE2 (ENSPVAG00000004796) #21	ENSPVAG00000004795 #22	PYCR2 (ENSPVAG00000004794) #23	ENSPVAG00000004790 #22	TMEM63A (ENSPVAG00000004786) #25	EPHX1 (ENSPVAG00000004784) #26
Microchiroptera	ANCESTRAL SPECIES	32	ENSGT00390000004799 #8	ENSGT00940000178689	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb ##20	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	19	ENSRFEG00010015342	AHCTF1 (ENSRFEG00010015223) #10	ENSRFEG00010015186	CDC42BPA (ENSRFEG00010014755) #11	COQ8A (ENSRFEG00010014597) #12	PSEN2 (ENSRFEG00010014406) #13	ENSRFEG00010014341	ITPKB (ENSRFEG00010014319) #14	STUM (ENSRFEG00010014278) #15	PARP1 (ENSRFEG00010014181) #16	LIN9 (ENSRFEG00010013701) #17	MIXL1 (ENSRFEG00010013582) #18	ACBD3 (ENSRFEG00010013539) #19	ENSRFEG00010021810 ##20	SDE2 (ENSRFEG00010021807) #21	ENSRFEG00010021799 #22	PYCR2 (ENSRFEG00010021788) #23	ENSRFEG00010021782 #22	TMEM63A (ENSRFEG00010021763) #25	EPHX1 (ENSRFEG00010021750) #26	ENSRFEG00010021741 #37	ENAH (ENSRFEG00010021710) #34	LBR (ENSRFEG00010021686)	DNAH14 (ENSRFEG00010021629) #32	CNIH3 (ENSRFEG00010021586) #31	WDR26 (ENSRFEG00010021568) #30	CNIH4 (ENSRFEG00010021549) #29	NVL (ENSRFEG00010021511) #28	DEGS1 (ENSRFEG00010021497) #27	FBXO28 (ENSRFEG00010021487)	TP53BP2 (ENSRFEG00010021449)
Greater horseshoe bat	MODERN SPECIES	19	ENSRFEG00010015186	CDC42BPA (ENSRFEG00010014755) #11	COQ8A (ENSRFEG00010014597) #12	PSEN2 (ENSRFEG00010014406) #13	ENSRFEG00010014341	ITPKB (ENSRFEG00010014319) #14	STUM (ENSRFEG00010014278) #15	PARP1 (ENSRFEG00010014181) #16	LIN9 (ENSRFEG00010013701) #17	MIXL1 (ENSRFEG00010013582) #18	ACBD3 (ENSRFEG00010013539) #19	ENSRFEG00010021810 ##20	SDE2 (ENSRFEG00010021807) #21	ENSRFEG00010021799 #22	PYCR2 (ENSRFEG00010021788) #23	ENSRFEG00010021782 #22	TMEM63A (ENSRFEG00010021763) #25	EPHX1 (ENSRFEG00010021750) #26	ENSRFEG00010021741 #37	ENAH (ENSRFEG00010021710) #34	LBR (ENSRFEG00010021686)	DNAH14 (ENSRFEG00010021629) #32	CNIH3 (ENSRFEG00010021586) #31	WDR26 (ENSRFEG00010021568) #30	CNIH4 (ENSRFEG00010021549) #29	NVL (ENSRFEG00010021511) #28	DEGS1 (ENSRFEG00010021497) #27	FBXO28 (ENSRFEG00010021487)	TP53BP2 (ENSRFEG00010021449)	CAPN2 (ENSRFEG00010021418)	CAPN8 (ENSRFEG00010021382)
Microbat	MODERN SPECIES	2094															SDE2 (ENSMLUG00000015272) #21	ENSMLUG00000005154 #22	PYCR2 (ENSMLUG00000000978) #23
Equus	DUPLICATION
Equus	ANCESTRAL SPECIES	41	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.mc #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.lc #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Donkey	MODERN SPECIES	23	ENSEASG00005031616	SCCPDH (ENSEASG00005005739) #8	ENSEASG00005036075 #9	ENSEASG00005005859 #10	ENSEASG00005006206 #11	COQ8A (ENSEASG00005013257) #12	PSEN2 (ENSEASG00005013260) #13	ITPKB (ENSEASG00005013263) #14	STUM (ENSEASG00005033549) #15	PARP1 (ENSEASG00005013275) #16	LIN9 (ENSEASG00005013290) #17	MIXL1 (ENSEASG00005013350) #18	ACBD3 (ENSEASG00005013353) #19	ENSEASG00005013355 ##20	SDE2 (ENSEASG00005013356) #21	ENSEASG00005030091 #22	PYCR2 (ENSEASG00005013358) #23	ENSEASG00005025761 #22	TMEM63A (ENSEASG00005013377) #25	EPHX1 (ENSEASG00005013496) #26	ENSEASG00005013509 #37	ENAH (ENSEASG00005013528) #34	LBR (ENSEASG00005013556)	DNAH14 (ENSEASG00005033325) #32	CNIH3 (ENSEASG00005038744) #31	WDR26 (ENSEASG00005013590) #30	CNIH4 (ENSEASG00005013594) #29	NVL (ENSEASG00005013599) #28	DEGS1 (ENSEASG00005013608) #27	FBXO28 (ENSEASG00005013614)	TP53BP2 (ENSEASG00005013621)
Horse	MODERN SPECIES	23	ENSECAG00000038309 #9	AHCTF1 (ENSECAG00000011125) #10	CDC42BPA (ENSECAG00000017881) #11	COQ8A (ENSECAG00000019955) #12	PSEN2 (ENSECAG00000008285) #13	ITPKB (ENSECAG00000014769) #14	STUM (ENSECAG00000037774) #15	PARP1 (ENSECAG00000019207) #16	LIN9 (ENSECAG00000014325) #17	MIXL1 (ENSECAG00000033929) #18	ACBD3 (ENSECAG00000000084) #19	H3-3A (ENSECAG00000006904) ##20	SDE2 (ENSECAG00000008052) #21	ENSECAG00000038401 #22	PYCR2 (ENSECAG00000010882) #23	ENSECAG00000039385 #22	TMEM63A (ENSECAG00000018566) #25	EPHX1 (ENSECAG00000019677) #26	SRP9 (ENSECAG00000054865) ##37	ENAH (ENSECAG00000022447) #34	LBR (ENSECAG00000011192)	DNAH14 (ENSECAG00000044830) #32	ENSECAG00000060177	CNIH3 (ENSECAG00000019237) #31	WDR26 (ENSECAG00000020139) #30	CNIH4 (ENSECAG00000010873) #29	NVL (ENSECAG00000014421) #28	DEGS1 (ENSECAG00000000186) #27	FBXO28 (ENSECAG00000002428)	TP53BP2 (ENSECAG00000005927)	CAPN2 (ENSECAG00000008742)
Equus	ANCESTRAL SPECIES	41	ENSGT00940000171704	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00390000008003 #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.mc #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.lc #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b
Donkey	MODERN SPECIES	23	ENSEASG00005036075 #9	ENSEASG00005005859 #10	ENSEASG00005006206 #11	COQ8A (ENSEASG00005013257) #12	PSEN2 (ENSEASG00005013260) #13	ITPKB (ENSEASG00005013263) #14	STUM (ENSEASG00005033549) #15	PARP1 (ENSEASG00005013275) #16	LIN9 (ENSEASG00005013290) #17	MIXL1 (ENSEASG00005013350) #18	ACBD3 (ENSEASG00005013353) #19	ENSEASG00005013355 ##20	SDE2 (ENSEASG00005013356) #21	ENSEASG00005030091 #22	PYCR2 (ENSEASG00005013358) #23	ENSEASG00005025761 #22	TMEM63A (ENSEASG00005013377) #25	EPHX1 (ENSEASG00005013496) #26	ENSEASG00005013509 #37	ENAH (ENSEASG00005013528) #34	LBR (ENSEASG00005013556)	DNAH14 (ENSEASG00005033325) #32	CNIH3 (ENSEASG00005038744) #31	WDR26 (ENSEASG00005013590) #30	CNIH4 (ENSEASG00005013594) #29	NVL (ENSEASG00005013599) #28	DEGS1 (ENSEASG00005013608) #27	FBXO28 (ENSEASG00005013614)	TP53BP2 (ENSEASG00005013621)	CAPN2 (ENSEASG00005013647)	CAPN8 (ENSEASG00005013672)
Horse	MODERN SPECIES	23	CNST (ENSECAG00000019039)	SCCPDH (ENSECAG00000020866) #8	ENSECAG00000038309 #9	AHCTF1 (ENSECAG00000011125) #10	CDC42BPA (ENSECAG00000017881) #11	COQ8A (ENSECAG00000019955) #12	PSEN2 (ENSECAG00000008285) #13	ITPKB (ENSECAG00000014769) #14	STUM (ENSECAG00000037774) #15	PARP1 (ENSECAG00000019207) #16	LIN9 (ENSECAG00000014325) #17	MIXL1 (ENSECAG00000033929) #18	ACBD3 (ENSECAG00000000084) #19	H3-3A (ENSECAG00000006904) ##20	SDE2 (ENSECAG00000008052) #21	ENSECAG00000038401 #22	PYCR2 (ENSECAG00000010882) #23	ENSECAG00000039385 #22	TMEM63A (ENSECAG00000018566) #25	EPHX1 (ENSECAG00000019677) #26	SRP9 (ENSECAG00000054865) ##37	ENAH (ENSECAG00000022447) #34	LBR (ENSECAG00000011192)	DNAH14 (ENSECAG00000044830) #32	ENSECAG00000060177	CNIH3 (ENSECAG00000019237) #31	WDR26 (ENSECAG00000020139) #30	CNIH4 (ENSECAG00000010873) #29	NVL (ENSECAG00000014421) #28	DEGS1 (ENSECAG00000000186) #27	FBXO28 (ENSECAG00000002428)
Eulipotyphla	ANCESTRAL SPECIES	440																ENSGT00390000010056 #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	4072																ENSEEUG00000002371 #22
Hedgehog	MODERN SPECIES	4075																ENSEEUG00000001111 #22
Common shrew	MODERN SPECIES	3088																ENSSARG00000014089 #22	TMEM63A (ENSSARG00000014071) #25	ENSSARG00000014069 #26
Atlantogenata	ANCESTRAL SPECIES	44	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00940000163104 #9	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Afrotheria	ANCESTRAL SPECIES	47	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00400000023425	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Afrotheria_a	ANCESTRAL SPECIES	48	ENSGT00940000156766	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861 #7	ENSGT00390000004799 #8	ENSGT00390000018900 #10	ENSGT01030000234517.H.b #11	ENSGT00940000156810 #12	ENSGT00940000157923 #13	ENSGT00940000156764.a #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #37	ENSGT00940000157376 #34	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000160505 #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #30	ENSGT00950000182834.B #29	ENSGT00570000079239 #28	ENSGT00390000013448.a.a #27	ENSGT00390000002970	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Hyrax	DUPLICATION
Hyrax	MODERN SPECIES	10153															SDE2 (ENSPCAG00000011809) #21	ENSPCAG00000011877 #22
Hyrax	MODERN SPECIES	3258																ENSPCAG00000002575 #22
Elephant	DUPLICATION
Elephant	MODERN SPECIES	126	SCCPDH (ENSLAFG00000001357) #8	AHCTF1 (ENSLAFG00000009243) #10	CDC42BPA (ENSLAFG00000002527) #11	COQ8A (ENSLAFG00000002525) #12	PSEN2 (ENSLAFG00000007445) #13	ENSLAFG00000011453 #14	ENSLAFG00000028339 #14	PARP1 (ENSLAFG00000007830) #16	LIN9 (ENSLAFG00000002421) #17	MIXL1 (ENSLAFG00000022623) #18	ACBD3 (ENSLAFG00000009011) #19	ENSLAFG00000021624 ##20	SDE2 (ENSLAFG00000002195) #21	ENSLAFG00000002111 #22	ENSLAFG00000002110 #23	ENSLAFG00000002109 #22	TMEM63A (ENSLAFG00000017739) #25	EPHX1 (ENSLAFG00000017733) #26	SRP9 (ENSLAFG00000004081) #37	ENAH (ENSLAFG00000003931) #34	LBR (ENSLAFG00000010594)	ENSLAFG00000026932 #32	CNIH3 (ENSLAFG00000005787) #31	WDR26 (ENSLAFG00000013154) #30	CNIH4 (ENSLAFG00000014819) #29	NVL (ENSLAFG00000014807) #28	DEGS1 (ENSLAFG00000001728) #27	FBXO28 (ENSLAFG00000000621)	TP53BP2 (ENSLAFG00000001919)	CAPN2 (ENSLAFG00000001917)	CAPN8 (ENSLAFG00000001457)
Elephant	MODERN SPECIES	126	TFB2M (ENSLAFG00000015061)	CNST (ENSLAFG00000016089) #7	SCCPDH (ENSLAFG00000001357) #8	AHCTF1 (ENSLAFG00000009243) #10	CDC42BPA (ENSLAFG00000002527) #11	COQ8A (ENSLAFG00000002525) #12	PSEN2 (ENSLAFG00000007445) #13	ENSLAFG00000011453 #14	ENSLAFG00000028339 #14	PARP1 (ENSLAFG00000007830) #16	LIN9 (ENSLAFG00000002421) #17	MIXL1 (ENSLAFG00000022623) #18	ACBD3 (ENSLAFG00000009011) #19	ENSLAFG00000021624 ##20	SDE2 (ENSLAFG00000002195) #21	ENSLAFG00000002111 #22	ENSLAFG00000002110 #23	ENSLAFG00000002109 #22	TMEM63A (ENSLAFG00000017739) #25	EPHX1 (ENSLAFG00000017733) #26	SRP9 (ENSLAFG00000004081) #37	ENAH (ENSLAFG00000003931) #34	LBR (ENSLAFG00000010594)	ENSLAFG00000026932 #32	CNIH3 (ENSLAFG00000005787) #31	WDR26 (ENSLAFG00000013154) #30	CNIH4 (ENSLAFG00000014819) #29	NVL (ENSLAFG00000014807) #28	DEGS1 (ENSLAFG00000001728) #27	FBXO28 (ENSLAFG00000000621)	TP53BP2 (ENSLAFG00000001919)
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	13143																ENSETEG00000004742 #22
Tenrec	MODERN SPECIES	11781																ENSETEG00000016785 #22
Xenarthra	ANCESTRAL SPECIES	1004													ENSGT00390000018505 #37	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23
Sloth	MODERN SPECIES	3588																ENSCHOG00000009015 #22
Armadillo	MODERN SPECIES	549													ENSDNOG00000013412 #37	EPHX1 (ENSDNOG00000009266) #26	TMEM63A (ENSDNOG00000024203) #25	ENSDNOG00000034833 #22	PYCR2 (ENSDNOG00000023877) #23