Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000010056 #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00390000010056 #22
Euteleostomi	ANCESTRAL SPECIES	1138																ENSGT00390000010056 #22	ENSGT00940000159576 #25
Sarcopterygii	ANCESTRAL SPECIES	728														ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22
Tetrapoda	ANCESTRAL SPECIES	15								ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT01030000234555.a.b	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165101	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Amniota	ANCESTRAL SPECIES	12	ENSGT00620000087966.b	ENSGT01030000234620.a.b.b.a	ENSGT00390000009379	ENSGT00390000007971	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165101	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00940000170165	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Mammalia	ANCESTRAL SPECIES	2	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165101	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Theria	ANCESTRAL SPECIES	12	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Eutheria	ANCESTRAL SPECIES		ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Primates	ANCESTRAL SPECIES	7	ENSGT00390000005861	ENSGT00390000004799	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Haplorrhini	ANCESTRAL SPECIES	7				ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Simiiformes	ANCESTRAL SPECIES	8				ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380 #7	ENSGT00910000148176 #8	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37
Hominoidea	DUPLICATION
Hominoidea	DUPLICATION
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000159380 #7	ENSGT00910000147389	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000157177.i.b #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000159380 #7	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000157177.i.b #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00910000147389	ENSGT00940000159380 #7	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000157177.i.b #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000003465.b.b.o.b #36
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00910000147389	ENSGT00940000159380 #7	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000157177.i.b #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000003465.b.b.o.b #36	ENSGT00390000002970.q #37
Pan	ANCESTRAL SPECIES		ENSGT00910000147389	ENSGT00940000159380 #7	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000157177.i.b #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000003465.b.b.o.b #36	ENSGT00390000002970.q #37
Bonobo	MODERN SPECIES		JMJD4 (ENSPPAG00000041921) #7	ENSPPAG00000042694 #8	ENSPPAG00000042857 #9	CDC42BPA (ENSPPAG00000030700) #10	COQ8A (ENSPPAG00000038783) #11	PSEN2 (ENSPPAG00000029453) #12	ITPKB (ENSPPAG00000034181) #13	ENSPPAG00000026314 #14	ENSPPAG00000035608 #15	PARP1 (ENSPPAG00000040862) #16	LIN9 (ENSPPAG00000029947) #17	ENSPPAG00000013035 #18	ACBD3 (ENSPPAG00000034288) #19	ENSPPAG00000003422 #20	SDE2 (ENSPPAG00000037583) #21	LEFTY2 (ENSPPAG00000029951) #22	PYCR2 (ENSPPAG00000029624) #23	LEFTY1 (ENSPPAG00000031732) #24	TMEM63A (ENSPPAG00000035003) #25	EPHX1 (ENSPPAG00000037369) #26	SRP9 (ENSPPAG00000042680) #27	ENSPPAG00000027545 #28	LBR (ENSPPAG00000029928) #29	DNAH14 (ENSPPAG00000033548) #30	CNIH3 (ENSPPAG00000041930) #31	WDR26 (ENSPPAG00000030839) #32	CNIH4 (ENSPPAG00000037258) #33	NVL (ENSPPAG00000030596) #34	DEGS1 (ENSPPAG00000033472) #35	ENSPPAG00000005299 #36	FBXO28 (ENSPPAG00000034613) #37
Chimpanzee	MODERN SPECIES		ENSPTRG00000048948	JMJD4 (ENSPTRG00000002059) #7	ZNF678 (ENSPTRG00000002057)	CDC42BPA (ENSPTRG00000042934) #10	COQ8A (ENSPTRG00000033741) #11	PSEN2 (ENSPTRG00000002052) #12	ITPKB (ENSPTRG00000002051) #13	STUM (ENSPTRG00000030135) #14	ENSPTRG00000043266 #15	PARP1 (ENSPTRG00000002049) #16	LIN9 (ENSPTRG00000002048) #17	MIXL1 (ENSPTRG00000049290) #18	ACBD3 (ENSPTRG00000002046) #19	H3-3A (ENSPTRG00000002045) ##20	SDE2 (ENSPTRG00000002044) #21	LEFTY2 (ENSPTRG00000002043) #22	PYCR2 (ENSPTRG00000002042) #23	LEFTY1 (ENSPTRG00000049763) #24	TMEM63A (ENSPTRG00000002040) #25	EPHX1 (ENSPTRG00000002039) #26	SRP9 (ENSPTRG00000002038) #27	ENAH (ENSPTRG00000002037) #28	LBR (ENSPTRG00000002036) #29	DNAH14 (ENSPTRG00000050408) #30	CNIH3 (ENSPTRG00000002027) #31	WDR26 (ENSPTRG00000002026) #32	CNIH4 (ENSPTRG00000002025) #33	NVL (ENSPTRG00000046422) #34	DEGS1 (ENSPTRG00000002023) #35	ENSPTRG00000020477 #36	FBXO28 (ENSPTRG00000002021) #37
Human	MODERN SPECIES		PRSS38 (ENSG00000185888)	JMJD4 (ENSG00000081692) #7	SNAP47 (ENSG00000143740)	ZNF678 (ENSG00000181450)	CDC42BPA (ENSG00000143776) #10	COQ8A (ENSG00000163050) #11	PSEN2 (ENSG00000143801) #12	ITPKB (ENSG00000143772) #13	STUM (ENSG00000203685) #14	PARP1 (ENSG00000143799) #16	LIN9 (ENSG00000183814) #17	MIXL1 (ENSG00000185155) #18	ACBD3 (ENSG00000182827) #19	H3-3A (ENSG00000163041) #20	SDE2 (ENSG00000143751) #21	LEFTY2 (ENSG00000143768) #22	PYCR2 (ENSG00000143811) #23	ENSG00000255835	LEFTY1 (ENSG00000243709) #24	TMEM63A (ENSG00000196187) #25	EPHX1 (ENSG00000143819) #26	SRP9 (ENSG00000143742) #27	ENAH (ENSG00000154380) #28	LBR (ENSG00000143815) #29	DNAH14 (ENSG00000185842) #30	CNIH3 (ENSG00000143786) #31	WDR26 (ENSG00000162923) #32	CNIH4 (ENSG00000143771) #33	NVL (ENSG00000143748) #34	DEGS1 (ENSG00000143753) #35	FBXO28 (ENSG00000143756) #37
Gorilla	MODERN SPECIES		ENSGGOG00000037683	JMJD4 (ENSGGOG00000008441) #7	ENSGGOG00000041432	ZNF678 (ENSGGOG00000042328)	CDC42BPA (ENSGGOG00000009605) #10	COQ8A (ENSGGOG00000009596) #11	PSEN2 (ENSGGOG00000003332) #12	ENSGGOG00000015112 #13	ENSGGOG00000015658 #14	PARP1 (ENSGGOG00000006308) #16	LIN9 (ENSGGOG00000002125) #17	MIXL1 (ENSGGOG00000002122) #18	ACBD3 (ENSGGOG00000001129) #19	ENSGGOG00000022526 ##20	SDE2 (ENSGGOG00000009850) #21	LEFTY2 (ENSGGOG00000000866) #22	PYCR2 (ENSGGOG00000014247) #23	LEFTY1 (ENSGGOG00000038788) #24	TMEM63A (ENSGGOG00000000862) #25	EPHX1 (ENSGGOG00000000859) #26	SRP9 (ENSGGOG00000011555) #27	ENSGGOG00000022660 #28	LBR (ENSGGOG00000015250) #29	ENSGGOG00000040109 #30	DNAH14 (ENSGGOG00000040408)	CNIH3 (ENSGGOG00000000242) #31	WDR26 (ENSGGOG00000008231) #32	CNIH4 (ENSGGOG00000005708) #33	ENSGGOG00000038475	NVL (ENSGGOG00000034871) #34	DEGS1 (ENSGGOG00000009270) #35
Orangutan	MODERN SPECIES		SNAP47 (ENSPPYG00000000153)	JMJD4 (ENSPPYG00000000154) #7	ENSPPYG00000000155	CDC42BPA (ENSPPYG00000000158) #10	COQ8A (ENSPPYG00000000159) #11	PSEN2 (ENSPPYG00000000160) #12	ITPKB (ENSPPYG00000000161) #13	STUM (ENSPPYG00000000162) #14	PARP1 (ENSPPYG00000000164) #16	ENSPPYG00000000165 #17	MIXL1 (ENSPPYG00000000166) #18	ACBD3 (ENSPPYG00000029541) #19	ENSPPYG00000032085	ENSPPYG00000000168 ##20	SDE2 (ENSPPYG00000000169) #21	LEFTY2 (ENSPPYG00000030151) #22	PYCR2 (ENSPPYG00000000171) #23	LEFTY1 (ENSPPYG00000033926) #24	TMEM63A (ENSPPYG00000029911) #25	EPHX1 (ENSPPYG00000039616) #26	ENSPPYG00000000173 #26	SRP9 (ENSPPYG00000000174) #27	ENSPPYG00000000175 #28	LBR (ENSPPYG00000000176) #29	DNAH14 (ENSPPYG00000039314) #30	CNIH3 (ENSPPYG00000000181) #31	ENSPPYG00000002704	WDR26 (ENSPPYG00000000182) #32	CNIH4 (ENSPPYG00000040381) #33	NVL (ENSPPYG00000000184) #34	DEGS1 (ENSPPYG00000010649) #35
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000157177.i.b #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Hominidae	ANCESTRAL SPECIES	6	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000157177.i.b #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000157177.i.b #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000003465.b.b.o.b #36	ENSGT00390000002970.q #37	ENSGT00950000182960.a.a.a.a.b.rb.w.a
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000157177.i.b #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000003465.b.b.o.b #36	ENSGT00390000002970.q #37	ENSGT00950000182960.a.a.a.a.b.rb.w.a	ENSGT00950000183070.a.b.g.b.b.a.a
Pan	ANCESTRAL SPECIES		ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000157177.i.b #15	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.q.a #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.q.b #24	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000003465.b.b.o.b #36	ENSGT00390000002970.q #37	ENSGT00950000182960.a.a.a.a.b.rb.w.a	ENSGT00950000183070.a.b.g.b.b.a.a
Chimpanzee	MODERN SPECIES		ZNF678 (ENSPTRG00000002057)	CDC42BPA (ENSPTRG00000042934) #10	COQ8A (ENSPTRG00000033741) #11	PSEN2 (ENSPTRG00000002052) #12	ITPKB (ENSPTRG00000002051) #13	STUM (ENSPTRG00000030135) #14	ENSPTRG00000043266 #15	PARP1 (ENSPTRG00000002049) #16	LIN9 (ENSPTRG00000002048) #17	MIXL1 (ENSPTRG00000049290) #18	ACBD3 (ENSPTRG00000002046) #19	H3-3A (ENSPTRG00000002045) ##20	SDE2 (ENSPTRG00000002044) #21	LEFTY2 (ENSPTRG00000002043) #22	PYCR2 (ENSPTRG00000002042) #23	LEFTY1 (ENSPTRG00000049763) #24	TMEM63A (ENSPTRG00000002040) #25	EPHX1 (ENSPTRG00000002039) #26	SRP9 (ENSPTRG00000002038) #27	ENAH (ENSPTRG00000002037) #28	LBR (ENSPTRG00000002036) #29	DNAH14 (ENSPTRG00000050408) #30	CNIH3 (ENSPTRG00000002027) #31	WDR26 (ENSPTRG00000002026) #32	CNIH4 (ENSPTRG00000002025) #33	NVL (ENSPTRG00000046422) #34	DEGS1 (ENSPTRG00000002023) #35	ENSPTRG00000020477 #36	FBXO28 (ENSPTRG00000002021) #37	ENSPTRG00000051447	ENSPTRG00000050115
Bonobo	MODERN SPECIES		ENSPPAG00000042857 #9	CDC42BPA (ENSPPAG00000030700) #10	COQ8A (ENSPPAG00000038783) #11	PSEN2 (ENSPPAG00000029453) #12	ITPKB (ENSPPAG00000034181) #13	ENSPPAG00000026314 #14	ENSPPAG00000035608 #15	PARP1 (ENSPPAG00000040862) #16	LIN9 (ENSPPAG00000029947) #17	ENSPPAG00000013035 #18	ACBD3 (ENSPPAG00000034288) #19	ENSPPAG00000003422 #20	SDE2 (ENSPPAG00000037583) #21	LEFTY2 (ENSPPAG00000029951) #22	PYCR2 (ENSPPAG00000029624) #23	LEFTY1 (ENSPPAG00000031732) #24	TMEM63A (ENSPPAG00000035003) #25	EPHX1 (ENSPPAG00000037369) #26	SRP9 (ENSPPAG00000042680) #27	ENSPPAG00000027545 #28	LBR (ENSPPAG00000029928) #29	DNAH14 (ENSPPAG00000033548) #30	CNIH3 (ENSPPAG00000041930) #31	WDR26 (ENSPPAG00000030839) #32	CNIH4 (ENSPPAG00000037258) #33	NVL (ENSPPAG00000030596) #34	DEGS1 (ENSPPAG00000033472) #35	ENSPPAG00000005299 #36	FBXO28 (ENSPPAG00000034613) #37	ENSPPAG00000029629	ENSPPAG00000028543
Human	MODERN SPECIES		ZNF678 (ENSG00000181450)	CDC42BPA (ENSG00000143776) #10	COQ8A (ENSG00000163050) #11	PSEN2 (ENSG00000143801) #12	ITPKB (ENSG00000143772) #13	STUM (ENSG00000203685) #14	PARP1 (ENSG00000143799) #16	LIN9 (ENSG00000183814) #17	MIXL1 (ENSG00000185155) #18	ACBD3 (ENSG00000182827) #19	H3-3A (ENSG00000163041) #20	SDE2 (ENSG00000143751) #21	LEFTY2 (ENSG00000143768) #22	PYCR2 (ENSG00000143811) #23	ENSG00000255835	LEFTY1 (ENSG00000243709) #24	TMEM63A (ENSG00000196187) #25	EPHX1 (ENSG00000143819) #26	SRP9 (ENSG00000143742) #27	ENAH (ENSG00000154380) #28	LBR (ENSG00000143815) #29	DNAH14 (ENSG00000185842) #30	CNIH3 (ENSG00000143786) #31	WDR26 (ENSG00000162923) #32	CNIH4 (ENSG00000143771) #33	NVL (ENSG00000143748) #34	DEGS1 (ENSG00000143753) #35	FBXO28 (ENSG00000143756) #37	TP53BP2 (ENSG00000143514)	CAPN2 (ENSG00000162909)	CAPN8 (ENSG00000203697)
Gorilla	MODERN SPECIES		ENSGGOG00000041432	ZNF678 (ENSGGOG00000042328)	CDC42BPA (ENSGGOG00000009605) #10	COQ8A (ENSGGOG00000009596) #11	PSEN2 (ENSGGOG00000003332) #12	ENSGGOG00000015112 #13	ENSGGOG00000015658 #14	PARP1 (ENSGGOG00000006308) #16	LIN9 (ENSGGOG00000002125) #17	MIXL1 (ENSGGOG00000002122) #18	ACBD3 (ENSGGOG00000001129) #19	ENSGGOG00000022526 ##20	SDE2 (ENSGGOG00000009850) #21	LEFTY2 (ENSGGOG00000000866) #22	PYCR2 (ENSGGOG00000014247) #23	LEFTY1 (ENSGGOG00000038788) #24	TMEM63A (ENSGGOG00000000862) #25	EPHX1 (ENSGGOG00000000859) #26	SRP9 (ENSGGOG00000011555) #27	ENSGGOG00000022660 #28	LBR (ENSGGOG00000015250) #29	ENSGGOG00000040109 #30	DNAH14 (ENSGGOG00000040408)	CNIH3 (ENSGGOG00000000242) #31	WDR26 (ENSGGOG00000008231) #32	CNIH4 (ENSGGOG00000005708) #33	ENSGGOG00000038475	NVL (ENSGGOG00000034871) #34	DEGS1 (ENSGGOG00000009270) #35	ENSGGOG00000027698 #36	FBXO28 (ENSGGOG00000010974) #37
Orangutan	MODERN SPECIES		ENSPPYG00000000155	CDC42BPA (ENSPPYG00000000158) #10	COQ8A (ENSPPYG00000000159) #11	PSEN2 (ENSPPYG00000000160) #12	ITPKB (ENSPPYG00000000161) #13	STUM (ENSPPYG00000000162) #14	PARP1 (ENSPPYG00000000164) #16	ENSPPYG00000000165 #17	MIXL1 (ENSPPYG00000000166) #18	ACBD3 (ENSPPYG00000029541) #19	ENSPPYG00000032085	ENSPPYG00000000168 ##20	SDE2 (ENSPPYG00000000169) #21	LEFTY2 (ENSPPYG00000030151) #22	PYCR2 (ENSPPYG00000000171) #23	LEFTY1 (ENSPPYG00000033926) #24	TMEM63A (ENSPPYG00000029911) #25	EPHX1 (ENSPPYG00000039616) #26	ENSPPYG00000000173 #26	SRP9 (ENSPPYG00000000174) #27	ENSPPYG00000000175 #28	LBR (ENSPPYG00000000176) #29	DNAH14 (ENSPPYG00000039314) #30	CNIH3 (ENSPPYG00000000181) #31	ENSPPYG00000002704	WDR26 (ENSPPYG00000000182) #32	CNIH4 (ENSPPYG00000040381) #33	NVL (ENSPPYG00000000184) #34	DEGS1 (ENSPPYG00000010649) #35	FBXO28 (ENSPPYG00000000185) #37	TP53BP2 (ENSPPYG00000000186)
Gibbon	MODERN SPECIES	20	ZNF678 (ENSNLEG00000008917)	CDC42BPA (ENSNLEG00000013980) #10	COQ8A (ENSNLEG00000013937) #11	PSEN2 (ENSNLEG00000013924) #12	ITPKB (ENSNLEG00000013915) #13	ENSNLEG00000013913 #14	ENSNLEG00000032044 #15	PARP1 (ENSNLEG00000013905) #16	LIN9 (ENSNLEG00000013837) #17	MIXL1 (ENSNLEG00000032618) #18	ACBD3 (ENSNLEG00000034130) #19	ENSNLEG00000013798 ##20	SDE2 (ENSNLEG00000013788) #21	ENSNLEG00000013769 ##22	PYCR2 (ENSNLEG00000026763) #23	LEFTY1 (ENSNLEG00000036199) #24	TMEM63A (ENSNLEG00000013755) #25	EPHX1 (ENSNLEG00000013747) #26	SRP9 (ENSNLEG00000013740) #27	ENSNLEG00000013693 #28	LBR (ENSNLEG00000027476) #29	ENSNLEG00000013644	CNIH3 (ENSNLEG00000032625) #31	ENSNLEG00000033301	WDR26 (ENSNLEG00000013555) #32	ENSNLEG00000032458 #33	NVL (ENSNLEG00000013437) #34	DEGS1 (ENSNLEG00000013432) #35	FBXO28 (ENSNLEG00000013415) #37	TP53BP2 (ENSNLEG00000013377)	CAPN2 (ENSNLEG00000013341)
Hominoidea	ANCESTRAL SPECIES																	ENSGT00390000010056.r ##22
Gibbon	MODERN SPECIES	20	JMJD4 (ENSNLEG00000032639) #7	ENSNLEG00000031801	ZNF678 (ENSNLEG00000008917)	CDC42BPA (ENSNLEG00000013980) #10	COQ8A (ENSNLEG00000013937) #11	PSEN2 (ENSNLEG00000013924) #12	ITPKB (ENSNLEG00000013915) #13	ENSNLEG00000013913 #14	ENSNLEG00000032044 #15	PARP1 (ENSNLEG00000013905) #16	LIN9 (ENSNLEG00000013837) #17	MIXL1 (ENSNLEG00000032618) #18	ACBD3 (ENSNLEG00000034130) #19	ENSNLEG00000013798 ##20	SDE2 (ENSNLEG00000013788) #21	ENSNLEG00000013769 ##22	PYCR2 (ENSNLEG00000026763) #23	LEFTY1 (ENSNLEG00000036199) #24	TMEM63A (ENSNLEG00000013755) #25	EPHX1 (ENSNLEG00000013747) #26	SRP9 (ENSNLEG00000013740) #27	ENSNLEG00000013693 #28	LBR (ENSNLEG00000027476) #29	ENSNLEG00000013644	CNIH3 (ENSNLEG00000032625) #31	ENSNLEG00000033301	WDR26 (ENSNLEG00000013555) #32	ENSNLEG00000032458 #33	NVL (ENSNLEG00000013437) #34	DEGS1 (ENSNLEG00000013432) #35	FBXO28 (ENSNLEG00000013415) #37
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176 #8	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00390000018665.d
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT01090000260030.b	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00390000018665.d
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT01090000260030.b	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00390000018665.d
Macaca	ANCESTRAL SPECIES		ENSGT00940000159380 #7	ENSGT01090000260030.b	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT01030000238203	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00940000161627.a.b.a.a.b	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00950000183105.B.a.a.b	ENSGT00530000063651.a #19	ENSGT01040000240755.A.b.b.a	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00950000183044.a.a.a.c.d #23	ENSGT00390000010056.p #22	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.a.a ##27	ENSGT00940000173703	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Rhesus	MODERN SPECIES		COQ8A (ENSMMUG00000008636) #11	PSEN2 (ENSMMUG00000018525) #12	ITPKB (ENSMMUG00000061649) #13	STUM (ENSMMUG00000008640) #14	PARP1 (ENSMMUG00000021820) #16	ENSMMUG00000050685	LIN9 (ENSMMUG00000016014) #17	MIXL1 (ENSMMUG00000005129) #18	ENSMMUG00000063956	ACBD3 (ENSMMUG00000019058) #19	ENSMMUG00000059492	H3-3A (ENSMMUG00000055584) #20	SDE2 (ENSMMUG00000042699) #21	ENSMMUG00000056097	ENSMMUG00000011435 #22	PYCR2 (ENSMMUG00000011434) #22	TMEM63A (ENSMMUG00000005785) #25	EPHX1 (ENSMMUG00000005782) #26	SRP9 (ENSMMUG00000000134) ##27	ENAH (ENSMMUG00000002227) #28	LBR (ENSMMUG00000003472) #29	ENSMMUG00000051471	ENSMMUG00000060677	CNIH3 (ENSMMUG00000010335) #31	WDR26 (ENSMMUG00000012227) #32	CNIH4 (ENSMMUG00000063959) #33	NVL (ENSMMUG00000022510) #34	DEGS1 (ENSMMUG00000002400) #35	FBXO28 (ENSMMUG00000000676) #37	TP53BP2 (ENSMMUG00000011146)	CAPN2 (ENSMMUG00000011142)
Pig-tailed macaque	MODERN SPECIES	102	ENSMNEG00000033665	CDC42BPA (ENSMNEG00000034215) #10	COQ8A (ENSMNEG00000037185) #11	PSEN2 (ENSMNEG00000035904) #12	ITPKB (ENSMNEG00000032813) #13	STUM (ENSMNEG00000036609) #14	PARP1 (ENSMNEG00000034074) #16	LIN9 (ENSMNEG00000038790) #17	MIXL1 (ENSMNEG00000041606) #18	ENSMNEG00000041334	ACBD3 (ENSMNEG00000039320) #19	ENSMNEG00000029530 ##20	SDE2 (ENSMNEG00000038615) #21	ENSMNEG00000042256 #22	PYCR2 (ENSMNEG00000033158) #23	ENSMNEG00000035765 #22	TMEM63A (ENSMNEG00000035779) #25	EPHX1 (ENSMNEG00000041552) #26	SRP9 (ENSMNEG00000043512) #27	ENAH (ENSMNEG00000033447) #28	LBR (ENSMNEG00000008692) #29	ENSMNEG00000043544 #30	ENSMNEG00000034880	CNIH3 (ENSMNEG00000035965) #31	WDR26 (ENSMNEG00000031309) #32	CNIH4 (ENSMNEG00000041190) #33	NVL (ENSMNEG00000042774) #34	DEGS1 (ENSMNEG00000028734) #35	FBXO28 (ENSMNEG00000034283) #37	ENSMNEG00000029327	ENSMNEG00000041225
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176 #8	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00390000010283.`b.a.a.d	ENSGT00390000018665.d
Cercopithecinae_d	ANCESTRAL SPECIES	67			ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00390000010283.`b.a.a.d	ENSGT00390000018665.d
Drill	MODERN SPECIES	1249					ITPKB (ENSMLEG00000039007) #13	STUM (ENSMLEG00000013254) #14	PARP1 (ENSMLEG00000012344) #16	LIN9 (ENSMLEG00000030007) #17	MIXL1 (ENSMLEG00000030344) #18	ENSMLEG00000042005	ACBD3 (ENSMLEG00000037935) #19	ENSMLEG00000041187 ##20	SDE2 (ENSMLEG00000043885) #21	ENSMLEG00000043622 #22	PYCR2 (ENSMLEG00000038897) #23	ENSMLEG00000030559 #22	TMEM63A (ENSMLEG00000029246) #25	EPHX1 (ENSMLEG00000036654) #26	SRP9 (ENSMLEG00000037309) #27	ENAH (ENSMLEG00000039485) #28	LBR (ENSMLEG00000030506) #29	ENSMLEG00000032583 #30
Sooty mangabey	MODERN SPECIES	513			CDC42BPA (ENSCATG00000036374) #10	COQ8A (ENSCATG00000005294) #11	PSEN2 (ENSCATG00000043861) #12	ITPKB (ENSCATG00000031660) #13	STUM (ENSCATG00000035656) #14	PARP1 (ENSCATG00000038981) #16	LIN9 (ENSCATG00000035907) #17	MIXL1 (ENSCATG00000042419) #18	ACBD3 (ENSCATG00000043891) #19	H3-3A (ENSCATG00000036239) #20	SDE2 (ENSCATG00000035151) #21	ENSCATG00000038680 #22	PYCR2 (ENSCATG00000045074) #23	ENSCATG00000019235 #22	TMEM63A (ENSCATG00000039227) #25	EPHX1 (ENSCATG00000039564) #26	SRP9 (ENSCATG00000041813) #27	ENAH (ENSCATG00000006720) #28	LBR (ENSCATG00000031289) #29	DNAH14 (ENSCATG00000039957) #30	CNIH3 (ENSCATG00000042269) #31	ENSCATG00000030513	WDR26 (ENSCATG00000035046) #32	CNIH4 (ENSCATG00000043768) #33	NVL (ENSCATG00000040317) #34	DEGS1 (ENSCATG00000045366) #35	FBXO28 (ENSCATG00000035652) #37	ENSCATG00000014032	TP53BP2 (ENSCATG00000045377)
Olive baboon	MODERN SPECIES		CDC42BPA (ENSPANG00000007777) #10	COQ8A (ENSPANG00000005934) #11	PSEN2 (ENSPANG00000015683) #12	ENSPANG00000040643	ITPKB (ENSPANG00000014076) #13	ENSPANG00000042335 #14	ENSPANG00000041992	PARP1 (ENSPANG00000011198) #16	LIN9 (ENSPANG00000007503) #17	MIXL1 (ENSPANG00000007593) #18	ACBD3 (ENSPANG00000026078) #19	ENSPANG00000012291 ##20	SDE2 (ENSPANG00000017716) #21	ENSPANG00000031485 #22	PYCR2 (ENSPANG00000013395) #23	ENSPANG00000023521 #22	TMEM63A (ENSPANG00000009888) #25	EPHX1 (ENSPANG00000014172) #26	SRP9 (ENSPANG00000030164) #27	ENAH (ENSPANG00000007502) #28	LBR (ENSPANG00000006165) #29	ENSPANG00000043776	CNIH3 (ENSPANG00000016366) #31	ENSPANG00000030716	ENSPANG00000038502	WDR26 (ENSPANG00000012516) #32	CNIH4 (ENSPANG00000012290) #33	NVL (ENSPANG00000008349) #34	ENSPANG00000046984	DEGS1 (ENSPANG00000021909) #35	FBXO28 (ENSPANG00000035917) #37
Vervet Monkey	MODERN SPECIES	17	SNAP47 (ENSCSAG00000016423)	JMJD4 (ENSCSAG00000016420) #7	ENSCSAG00000016411	CDC42BPA (ENSCSAG00000016402) #10	COQ8A (ENSCSAG00000016382) #11	PSEN2 (ENSCSAG00000016372) #12	ITPKB (ENSCSAG00000016366) #13	STUM (ENSCSAG00000016358) #14	PARP1 (ENSCSAG00000016354) #16	LIN9 (ENSCSAG00000016351) #17	MIXL1 (ENSCSAG00000016345) #18	ACBD3 (ENSCSAG00000016340) #19	SDE2 (ENSCSAG00000016332) #21	ENSCSAG00000016323 #22	PYCR2 (ENSCSAG00000016314) #23	ENSCSAG00000016291 #22	TMEM63A (ENSCSAG00000016284) #25	EPHX1 (ENSCSAG00000016278) #26	ENAH (ENSCSAG00000016274) #28	LBR (ENSCSAG00000016260) #29	ENSCSAG00000016221	CNIH3 (ENSCSAG00000016214) #31	WDR26 (ENSCSAG00000016208) #32	CNIH4 (ENSCSAG00000016201) #33	NVL (ENSCSAG00000016196) #34	DEGS1 (ENSCSAG00000016186) #35	FBXO28 (ENSCSAG00000016176) #37	ENSCSAG00000000268	TP53BP2 (ENSCSAG00000016157)	CAPN2 (ENSCSAG00000016150)	CAPN8 (ENSCSAG00000016122)
Rhinopithecus	ANCESTRAL SPECIES	245	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058.o #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00950000183105.B.a.a.b.b	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT01100000263504.a.b.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505.a #30
Golden snub-nosed monkey	MODERN SPECIES	721	CDC42BPA (ENSRROG00000029107) #10	COQ8A (ENSRROG00000034012) #11	PSEN2 (ENSRROG00000031052) #12	ITPKB (ENSRROG00000033942) #13	STUM (ENSRROG00000009500) #14	ENSRROG00000020327	PARP1 (ENSRROG00000029280) #16	LIN9 (ENSRROG00000040247) #17	MIXL1 (ENSRROG00000043159) #18	ACBD3 (ENSRROG00000040704) #19	ENSRROG00000036089	ENSRROG00000033769 ##20	SDE2 (ENSRROG00000043133) #21	ENSRROG00000040509 #22	PYCR2 (ENSRROG00000044426) #23	ENSRROG00000038435 #22	ENSRROG00000029457 #25
Black snub-nosed monkey	MODERN SPECIES	851	TM4SF20 (ENSRBIG00000041706)	MFF (ENSRBIG00000042107)	COL4A3 (ENSRBIG00000038891)	COL4A4 (ENSRBIG00000030621)	RHBDD1 (ENSRBIG00000042928)	IRS1 (ENSRBIG00000030645)	NYAP2 (ENSRBIG00000031238)	LIN9 (ENSRBIG00000043619) #17	MIXL1 (ENSRBIG00000034282) #18	ENSRBIG00000038112	ACBD3 (ENSRBIG00000037536) #19	ENSRBIG00000012976 ##20	SDE2 (ENSRBIG00000042788) #21	ENSRBIG00000036291 #22	PYCR2 (ENSRBIG00000030213) #23	ENSRBIG00000043715 #22	TMEM63A (ENSRBIG00000042914) #25	EPHX1 (ENSRBIG00000033391) #26	SRP9 (ENSRBIG00000040480) #27	ENAH (ENSRBIG00000027849) #28	LBR (ENSRBIG00000043754) #29	ENSRBIG00000032234 #30
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT00950000182843.b	ENSGT00940000159380 #7	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176 #8	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT00950000182843.b	ENSGT00940000159380 #7	ENSGT01090000260030.b	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00950000182843.b	ENSGT00940000159380 #7	ENSGT01090000260030.b	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00950000182843.b	ENSGT00940000159380 #7	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176 #8	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37
Cercopithecinae_d	ANCESTRAL SPECIES	67					ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.l.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153272.a.b.o.b.b	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37
Drill	MODERN SPECIES	1249							ITPKB (ENSMLEG00000039007) #13	STUM (ENSMLEG00000013254) #14	PARP1 (ENSMLEG00000012344) #16	LIN9 (ENSMLEG00000030007) #17	MIXL1 (ENSMLEG00000030344) #18	ENSMLEG00000042005	ACBD3 (ENSMLEG00000037935) #19	ENSMLEG00000041187 ##20	SDE2 (ENSMLEG00000043885) #21	ENSMLEG00000043622 #22	PYCR2 (ENSMLEG00000038897) #23	ENSMLEG00000030559 #22	TMEM63A (ENSMLEG00000029246) #25	EPHX1 (ENSMLEG00000036654) #26	SRP9 (ENSMLEG00000037309) #27	ENAH (ENSMLEG00000039485) #28	LBR (ENSMLEG00000030506) #29	ENSMLEG00000032583 #30
Sooty mangabey	MODERN SPECIES	513					CDC42BPA (ENSCATG00000036374) #10	COQ8A (ENSCATG00000005294) #11	PSEN2 (ENSCATG00000043861) #12	ITPKB (ENSCATG00000031660) #13	STUM (ENSCATG00000035656) #14	PARP1 (ENSCATG00000038981) #16	LIN9 (ENSCATG00000035907) #17	MIXL1 (ENSCATG00000042419) #18	ACBD3 (ENSCATG00000043891) #19	H3-3A (ENSCATG00000036239) #20	SDE2 (ENSCATG00000035151) #21	ENSCATG00000038680 #22	PYCR2 (ENSCATG00000045074) #23	ENSCATG00000019235 #22	TMEM63A (ENSCATG00000039227) #25	EPHX1 (ENSCATG00000039564) #26	SRP9 (ENSCATG00000041813) #27	ENAH (ENSCATG00000006720) #28	LBR (ENSCATG00000031289) #29	DNAH14 (ENSCATG00000039957) #30	CNIH3 (ENSCATG00000042269) #31	ENSCATG00000030513	WDR26 (ENSCATG00000035046) #32	CNIH4 (ENSCATG00000043768) #33	NVL (ENSCATG00000040317) #34	DEGS1 (ENSCATG00000045366) #35	FBXO28 (ENSCATG00000035652) #37
Olive baboon	MODERN SPECIES		ENSPANG00000048924	ENSPANG00000048983 #8	CDC42BPA (ENSPANG00000007777) #10	COQ8A (ENSPANG00000005934) #11	PSEN2 (ENSPANG00000015683) #12	ENSPANG00000040643	ITPKB (ENSPANG00000014076) #13	ENSPANG00000042335 #14	ENSPANG00000041992	PARP1 (ENSPANG00000011198) #16	LIN9 (ENSPANG00000007503) #17	MIXL1 (ENSPANG00000007593) #18	ACBD3 (ENSPANG00000026078) #19	ENSPANG00000012291 ##20	SDE2 (ENSPANG00000017716) #21	ENSPANG00000031485 #22	PYCR2 (ENSPANG00000013395) #23	ENSPANG00000023521 #22	TMEM63A (ENSPANG00000009888) #25	EPHX1 (ENSPANG00000014172) #26	SRP9 (ENSPANG00000030164) #27	ENAH (ENSPANG00000007502) #28	LBR (ENSPANG00000006165) #29	ENSPANG00000043776	CNIH3 (ENSPANG00000016366) #31	ENSPANG00000030716	ENSPANG00000038502	WDR26 (ENSPANG00000012516) #32	CNIH4 (ENSPANG00000012290) #33	NVL (ENSPANG00000008349) #34	ENSPANG00000046984
Macaca	ANCESTRAL SPECIES		ENSGT00910000148086	ENSGT00950000182843.b	ENSGT00940000159380 #7	ENSGT01090000260030.b	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT01030000238203	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37
Pig-tailed macaque	MODERN SPECIES	102	JMJD4 (ENSMNEG00000044011) #7	ZNF678 (ENSMNEG00000027914)	ENSMNEG00000033665	CDC42BPA (ENSMNEG00000034215) #10	COQ8A (ENSMNEG00000037185) #11	PSEN2 (ENSMNEG00000035904) #12	ITPKB (ENSMNEG00000032813) #13	STUM (ENSMNEG00000036609) #14	PARP1 (ENSMNEG00000034074) #16	LIN9 (ENSMNEG00000038790) #17	MIXL1 (ENSMNEG00000041606) #18	ENSMNEG00000041334	ACBD3 (ENSMNEG00000039320) #19	ENSMNEG00000029530 ##20	SDE2 (ENSMNEG00000038615) #21	ENSMNEG00000042256 #22	PYCR2 (ENSMNEG00000033158) #23	ENSMNEG00000035765 #22	TMEM63A (ENSMNEG00000035779) #25	EPHX1 (ENSMNEG00000041552) #26	SRP9 (ENSMNEG00000043512) #27	ENAH (ENSMNEG00000033447) #28	LBR (ENSMNEG00000008692) #29	ENSMNEG00000043544 #30	ENSMNEG00000034880	CNIH3 (ENSMNEG00000035965) #31	WDR26 (ENSMNEG00000031309) #32	CNIH4 (ENSMNEG00000041190) #33	NVL (ENSMNEG00000042774) #34	DEGS1 (ENSMNEG00000028734) #35	FBXO28 (ENSMNEG00000034283) #37
Macaca_a	ANCESTRAL SPECIES		ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00940000161627.a.b.a.a.b	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00950000183105.B.a.a.b	ENSGT00530000063651.a #19	ENSGT01040000240755.A.b.b.a	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00950000183044.a.a.a.c.d #23	ENSGT00390000010056.p #22	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.a.a ##27	ENSGT00940000173703	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000054654	ENSMFAG00000053714	ITPKB (ENSMFAG00000035876) #13	STUM (ENSMFAG00000035398) #14	PARP1 (ENSMFAG00000002526) #16	ENSMFAG00000062286	LIN9 (ENSMFAG00000001110) #17	ENSMFAG00000027604	ENSMFAG00000051300	ACBD3 (ENSMFAG00000045670) #19	ENSMFAG00000048787	ENSMFAG00000050027	ENSMFAG00000045269 ##20	SDE2 (ENSMFAG00000031291) #21	ENSMFAG00000031760 #23	ENSMFAG00000039504 #22	ENSMFAG00000051570	SRP9 (ENSMFAG00000002641) #27	ENAH (ENSMFAG00000019058) #28	LBR (ENSMFAG00000034066) #29	DNAH14 (ENSMFAG00000036618) #30	CNIH3 (ENSMFAG00000039040) #31	WDR26 (ENSMFAG00000036710) #32	CNIH4 (ENSMFAG00000003700) #33	NVL (ENSMFAG00000003164) #34	DEGS1 (ENSMFAG00000039054) #35	FBXO28 (ENSMFAG00000000604) #37	ENSMFAG00000003807	CAPN2 (ENSMFAG00000003091)	CAPN8 (ENSMFAG00000042857)	ENSMFAG00000039325
Rhesus	MODERN SPECIES		CDC42BPA (ENSMMUG00000008638) #10	COQ8A (ENSMMUG00000008636) #11	PSEN2 (ENSMMUG00000018525) #12	ITPKB (ENSMMUG00000061649) #13	STUM (ENSMMUG00000008640) #14	PARP1 (ENSMMUG00000021820) #16	ENSMMUG00000050685	LIN9 (ENSMMUG00000016014) #17	MIXL1 (ENSMMUG00000005129) #18	ENSMMUG00000063956	ACBD3 (ENSMMUG00000019058) #19	ENSMMUG00000059492	H3-3A (ENSMMUG00000055584) #20	SDE2 (ENSMMUG00000042699) #21	ENSMMUG00000056097	ENSMMUG00000011435 #22	PYCR2 (ENSMMUG00000011434) #22	TMEM63A (ENSMMUG00000005785) #25	EPHX1 (ENSMMUG00000005782) #26	SRP9 (ENSMMUG00000000134) ##27	ENAH (ENSMMUG00000002227) #28	LBR (ENSMMUG00000003472) #29	ENSMMUG00000051471	ENSMMUG00000060677	CNIH3 (ENSMMUG00000010335) #31	WDR26 (ENSMMUG00000012227) #32	CNIH4 (ENSMMUG00000063959) #33	NVL (ENSMMUG00000022510) #34	DEGS1 (ENSMMUG00000002400) #35	FBXO28 (ENSMMUG00000000676) #37	TP53BP2 (ENSMMUG00000011146)
Vervet Monkey	MODERN SPECIES	17	WNT9A (ENSCSAG00000016440)	PRSS38 (ENSCSAG00000016434)	SNAP47 (ENSCSAG00000016423)	JMJD4 (ENSCSAG00000016420) #7	ENSCSAG00000016411	CDC42BPA (ENSCSAG00000016402) #10	COQ8A (ENSCSAG00000016382) #11	PSEN2 (ENSCSAG00000016372) #12	ITPKB (ENSCSAG00000016366) #13	STUM (ENSCSAG00000016358) #14	PARP1 (ENSCSAG00000016354) #16	LIN9 (ENSCSAG00000016351) #17	MIXL1 (ENSCSAG00000016345) #18	ACBD3 (ENSCSAG00000016340) #19	SDE2 (ENSCSAG00000016332) #21	ENSCSAG00000016323 #22	PYCR2 (ENSCSAG00000016314) #23	ENSCSAG00000016291 #22	TMEM63A (ENSCSAG00000016284) #25	EPHX1 (ENSCSAG00000016278) #26	ENAH (ENSCSAG00000016274) #28	LBR (ENSCSAG00000016260) #29	ENSCSAG00000016221	CNIH3 (ENSCSAG00000016214) #31	WDR26 (ENSCSAG00000016208) #32	CNIH4 (ENSCSAG00000016201) #33	NVL (ENSCSAG00000016196) #34	DEGS1 (ENSCSAG00000016186) #35	FBXO28 (ENSCSAG00000016176) #37	ENSCSAG00000000268	TP53BP2 (ENSCSAG00000016157)
Rhinopithecus	ANCESTRAL SPECIES	245		ENSGT00910000148176 #8	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058.o #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00950000183105.B.a.a.b.b	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT01100000263504.a.b.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.p #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.o #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505.a #30
Golden snub-nosed monkey	MODERN SPECIES	721		ENSRROG00000021333 #8	CDC42BPA (ENSRROG00000029107) #10	COQ8A (ENSRROG00000034012) #11	PSEN2 (ENSRROG00000031052) #12	ITPKB (ENSRROG00000033942) #13	STUM (ENSRROG00000009500) #14	ENSRROG00000020327	PARP1 (ENSRROG00000029280) #16	LIN9 (ENSRROG00000040247) #17	MIXL1 (ENSRROG00000043159) #18	ACBD3 (ENSRROG00000040704) #19	ENSRROG00000036089	ENSRROG00000033769 ##20	SDE2 (ENSRROG00000043133) #21	ENSRROG00000040509 #22	PYCR2 (ENSRROG00000044426) #23	ENSRROG00000038435 #22	ENSRROG00000029457 #25
Black snub-nosed monkey	MODERN SPECIES	851	ENSRBIG00000035997	AGFG1 (ENSRBIG00000033462)	TM4SF20 (ENSRBIG00000041706)	MFF (ENSRBIG00000042107)	COL4A3 (ENSRBIG00000038891)	COL4A4 (ENSRBIG00000030621)	RHBDD1 (ENSRBIG00000042928)	IRS1 (ENSRBIG00000030645)	NYAP2 (ENSRBIG00000031238)	LIN9 (ENSRBIG00000043619) #17	MIXL1 (ENSRBIG00000034282) #18	ENSRBIG00000038112	ACBD3 (ENSRBIG00000037536) #19	ENSRBIG00000012976 ##20	SDE2 (ENSRBIG00000042788) #21	ENSRBIG00000036291 #22	PYCR2 (ENSRBIG00000030213) #23	ENSRBIG00000043715 #22	TMEM63A (ENSRBIG00000042914) #25	EPHX1 (ENSRBIG00000033391) #26	SRP9 (ENSRBIG00000040480) #27	ENAH (ENSRBIG00000027849) #28	LBR (ENSRBIG00000043754) #29	ENSRBIG00000032234 #30
Platyrrhini	ANCESTRAL SPECIES	24	ENSGT00940000157464	ENSGT00910000146652	ENSGT00940000156644	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00390000001627.f	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Cebidae	DUPLICATION
Cebidae	ANCESTRAL SPECIES	23	ENSGT00390000003512	ENSGT00940000157464	ENSGT00940000156644	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00390000001627.f	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.k #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.l #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970.s.a #37	ENSGT00940000153463.b
Marmoset	MODERN SPECIES	10	RHOU (ENSCJAG00000046177)	ENSCJAG00000075541	CDC42BPA (ENSCJAG00000012980) #10	COQ8A (ENSCJAG00000012948) #11	PSEN2 (ENSCJAG00000012908) #12	ITPKB (ENSCJAG00000012894) #13	STUM (ENSCJAG00000012889) #14	PARP1 (ENSCJAG00000012831) #16	LIN9 (ENSCJAG00000012743) #17	ENSCJAG00000023047	MIXL1 (ENSCJAG00000012740) #18	ACBD3 (ENSCJAG00000038924) #19	ENSCJAG00000085157 #20	SDE2 (ENSCJAG00000012685) #21	ENSCJAG00000083204	ENSCJAG00000074352 #22	PYCR2 (ENSCJAG00000035770) #23	ENSCJAG00000081248 #22	TMEM63A (ENSCJAG00000012604) #25	EPHX1 (ENSCJAG00000012582) #26	ENSCJAG00000074178	SRP9 (ENSCJAG00000040095) #27	ENSCJAG00000057654	ENAH (ENSCJAG00000012510) #28	LBR (ENSCJAG00000004629) #29	ASPM (ENSCJAG00000004680)	ZBTB41 (ENSCJAG00000004794)	CRB1 (ENSCJAG00000004825)	ENSCJAG00000076740	ENSCJAG00000082951	DENND1B (ENSCJAG00000004852)
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00390000003512	ENSGT00940000157464	ENSGT00940000156644	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00390000001627.f	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.k #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.l #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970.s.a #37	ENSGT00940000153463.b
Capuchin	MODERN SPECIES	42	RAB4A (ENSCCAG00000024652)	RHOU (ENSCCAG00000011687)	CDC42BPA (ENSCCAG00000037751) #10	COQ8A (ENSCCAG00000028650) #11	ENSCCAG00000037794	PSEN2 (ENSCCAG00000037653) #12	ENSCCAG00000035298	ITPKB (ENSCCAG00000017443) #13	STUM (ENSCCAG00000027365) #14	PARP1 (ENSCCAG00000033484) #16	LIN9 (ENSCCAG00000024893) #17	MIXL1 (ENSCCAG00000030603) #18	ACBD3 (ENSCCAG00000029038) #19	ENSCCAG00000021678 ##20	SDE2 (ENSCCAG00000033106) #21	ENSCCAG00000024966 #22	PYCR2 (ENSCCAG00000029202) #23	ENSCCAG00000030395 #22	TMEM63A (ENSCCAG00000022581) #25	EPHX1 (ENSCCAG00000024699) #26	SRP9 (ENSCCAG00000034464) #27	ENSCCAG00000025068	ENAH (ENSCCAG00000026712) #28	LBR (ENSCCAG00000018433) #29	ENSCCAG00000017821	DNAH14 (ENSCCAG00000023187) #30	ENSCCAG00000023109	CNIH3 (ENSCCAG00000018443) #31	WDR26 (ENSCCAG00000035904) #32	CNIH4 (ENSCCAG00000037449) #33	NVL (ENSCCAG00000037416) #34
Bolivian squirrel monkey	MODERN SPECIES	79				CDC42BPA (ENSSBOG00000035079) #10	COQ8A (ENSSBOG00000030114) #11	PSEN2 (ENSSBOG00000028763) #12	ITPKB (ENSSBOG00000029300) #13	STUM (ENSSBOG00000035359) #14	ENSSBOG00000010799	PARP1 (ENSSBOG00000010144) #16	LIN9 (ENSSBOG00000034500) #17	MIXL1 (ENSSBOG00000030522) #18	ACBD3 (ENSSBOG00000033136) #19	ENSSBOG00000034792 #20	SDE2 (ENSSBOG00000023524) #21	ENSSBOG00000024940 #22	PYCR2 (ENSSBOG00000030067) #23	ENSSBOG00000025223 #22	TMEM63A (ENSSBOG00000034751) #25	EPHX1 (ENSSBOG00000019277) #26	SRP9 (ENSSBOG00000034573) #27	ENAH (ENSSBOG00000032372) #28	LBR (ENSSBOG00000032928) #29	DNAH14 (ENSSBOG00000027125) #30	ENSSBOG00000028635	ENSSBOG00000030414	ENSSBOG00000026740	CNIH3 (ENSSBOG00000028177) #31	WDR26 (ENSSBOG00000031377) #32	CNIH4 (ENSSBOG00000031048) #33	NVL (ENSSBOG00000034666) #34
Cebidae	ANCESTRAL SPECIES	23	ENSGT00940000156644	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00390000001627.f	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.k #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.l #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970.s.a #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Marmoset	MODERN SPECIES	10	CDC42BPA (ENSCJAG00000012980) #10	COQ8A (ENSCJAG00000012948) #11	PSEN2 (ENSCJAG00000012908) #12	ITPKB (ENSCJAG00000012894) #13	STUM (ENSCJAG00000012889) #14	PARP1 (ENSCJAG00000012831) #16	LIN9 (ENSCJAG00000012743) #17	ENSCJAG00000023047	MIXL1 (ENSCJAG00000012740) #18	ACBD3 (ENSCJAG00000038924) #19	ENSCJAG00000085157 #20	SDE2 (ENSCJAG00000012685) #21	ENSCJAG00000083204	ENSCJAG00000074352 #22	PYCR2 (ENSCJAG00000035770) #23	ENSCJAG00000081248 #22	TMEM63A (ENSCJAG00000012604) #25	EPHX1 (ENSCJAG00000012582) #26	ENSCJAG00000074178	SRP9 (ENSCJAG00000040095) #27	ENSCJAG00000057654	ENAH (ENSCJAG00000012510) #28	LBR (ENSCJAG00000004629) #29	ASPM (ENSCJAG00000004680)	ZBTB41 (ENSCJAG00000004794)	CRB1 (ENSCJAG00000004825)	ENSCJAG00000076740	ENSCJAG00000082951	DENND1B (ENSCJAG00000004852)	ENSCJAG00000058085	C1orf53 (ENSCJAG00000004910)
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00940000156644	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00390000001627.f	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb.n #20	ENSGT00530000063402.b #21	ENSGT00390000010056.k #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.l #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970.s.a #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Capuchin	MODERN SPECIES	42	CDC42BPA (ENSCCAG00000037751) #10	COQ8A (ENSCCAG00000028650) #11	ENSCCAG00000037794	PSEN2 (ENSCCAG00000037653) #12	ENSCCAG00000035298	ITPKB (ENSCCAG00000017443) #13	STUM (ENSCCAG00000027365) #14	PARP1 (ENSCCAG00000033484) #16	LIN9 (ENSCCAG00000024893) #17	MIXL1 (ENSCCAG00000030603) #18	ACBD3 (ENSCCAG00000029038) #19	ENSCCAG00000021678 ##20	SDE2 (ENSCCAG00000033106) #21	ENSCCAG00000024966 #22	PYCR2 (ENSCCAG00000029202) #23	ENSCCAG00000030395 #22	TMEM63A (ENSCCAG00000022581) #25	EPHX1 (ENSCCAG00000024699) #26	SRP9 (ENSCCAG00000034464) #27	ENSCCAG00000025068	ENAH (ENSCCAG00000026712) #28	LBR (ENSCCAG00000018433) #29	ENSCCAG00000017821	DNAH14 (ENSCCAG00000023187) #30	ENSCCAG00000023109	CNIH3 (ENSCCAG00000018443) #31	WDR26 (ENSCCAG00000035904) #32	CNIH4 (ENSCCAG00000037449) #33	NVL (ENSCCAG00000037416) #34	DEGS1 (ENSCCAG00000037018) #35	FBXO28 (ENSCCAG00000019791) #37
Bolivian squirrel monkey	MODERN SPECIES	79		CDC42BPA (ENSSBOG00000035079) #10	COQ8A (ENSSBOG00000030114) #11	PSEN2 (ENSSBOG00000028763) #12	ITPKB (ENSSBOG00000029300) #13	STUM (ENSSBOG00000035359) #14	ENSSBOG00000010799	PARP1 (ENSSBOG00000010144) #16	LIN9 (ENSSBOG00000034500) #17	MIXL1 (ENSSBOG00000030522) #18	ACBD3 (ENSSBOG00000033136) #19	ENSSBOG00000034792 #20	SDE2 (ENSSBOG00000023524) #21	ENSSBOG00000024940 #22	PYCR2 (ENSSBOG00000030067) #23	ENSSBOG00000025223 #22	TMEM63A (ENSSBOG00000034751) #25	EPHX1 (ENSSBOG00000019277) #26	SRP9 (ENSSBOG00000034573) #27	ENAH (ENSSBOG00000032372) #28	LBR (ENSSBOG00000032928) #29	DNAH14 (ENSSBOG00000027125) #30	ENSSBOG00000028635	ENSSBOG00000030414	ENSSBOG00000026740	CNIH3 (ENSSBOG00000028177) #31	WDR26 (ENSSBOG00000031377) #32	CNIH4 (ENSSBOG00000031048) #33	NVL (ENSSBOG00000034666) #34	ENSSBOG00000019803	DEGS1 (ENSSBOG00000031189) #35
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	958	RHOU (ENSANAG00000023279)	ENSANAG00000028192	CDC42BPA (ENSANAG00000030280) #10	COQ8A (ENSANAG00000027573) #11	ENSANAG00000020132	PSEN2 (ENSANAG00000028143) #12	ITPKB (ENSANAG00000024650) #13	STUM (ENSANAG00000027408) #14	PARP1 (ENSANAG00000032699) #16	LIN9 (ENSANAG00000004587) #17	MIXL1 (ENSANAG00000029392) #18	ACBD3 (ENSANAG00000034586) #19	ENSANAG00000017653	ENSANAG00000022092 #20	SDE2 (ENSANAG00000028299) #21	ENSANAG00000030058 #22	PYCR2 (ENSANAG00000027686) #23	ENSANAG00000029521 #22	TMEM63A (ENSANAG00000020164) #25	EPHX1 (ENSANAG00000027514) #26	SRP9 (ENSANAG00000022626) #27	ENSANAG00000027368 #28	LBR (ENSANAG00000021538) #29	ENSANAG00000037634 #30	ENSANAG00000029822	CNIH3 (ENSANAG00000035993) #31	ENSANAG00000017155	WDR26 (ENSANAG00000028722) #32	CNIH4 (ENSANAG00000022995) #33	ENSANAG00000015743	NVL (ENSANAG00000026330) #34
Mas night monkey	MODERN SPECIES	958	CDC42BPA (ENSANAG00000030280) #10	COQ8A (ENSANAG00000027573) #11	ENSANAG00000020132	PSEN2 (ENSANAG00000028143) #12	ITPKB (ENSANAG00000024650) #13	STUM (ENSANAG00000027408) #14	PARP1 (ENSANAG00000032699) #16	LIN9 (ENSANAG00000004587) #17	MIXL1 (ENSANAG00000029392) #18	ACBD3 (ENSANAG00000034586) #19	ENSANAG00000017653	ENSANAG00000022092 #20	SDE2 (ENSANAG00000028299) #21	ENSANAG00000030058 #22	PYCR2 (ENSANAG00000027686) #23	ENSANAG00000029521 #22	TMEM63A (ENSANAG00000020164) #25	EPHX1 (ENSANAG00000027514) #26	SRP9 (ENSANAG00000022626) #27	ENSANAG00000027368 #28	LBR (ENSANAG00000021538) #29	ENSANAG00000037634 #30	ENSANAG00000029822	CNIH3 (ENSANAG00000035993) #31	ENSANAG00000017155	WDR26 (ENSANAG00000028722) #32	CNIH4 (ENSANAG00000022995) #33	ENSANAG00000015743	NVL (ENSANAG00000026330) #34	DEGS1 (ENSANAG00000027303) #35	FBXO28 (ENSANAG00000023391) #37
Tarsier	MODERN SPECIES	6081															PYCR2 (ENSTSYG00000032908) #23	ENSTSYG00000030725 #22	TMEM63A (ENSTSYG00000036713) #25	EPHX1 (ENSTSYG00000034653) #26	SRP9 (ENSTSYG00000026832) #27
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Lemuriformes	ANCESTRAL SPECIES	6	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b.i.a #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Lemuriformes_a	ANCESTRAL SPECIES	113	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	304	ENSPCOG00000025467	CNST (ENSPCOG00000014228)	SCCPDH (ENSPCOG00000019439)	AHCTF1 (ENSPCOG00000027036)	CDC42BPA (ENSPCOG00000027076) #10	COQ8A (ENSPCOG00000022285) #11	PSEN2 (ENSPCOG00000013955) #12	ITPKB (ENSPCOG00000028557) #13	STUM (ENSPCOG00000013568) #14	PARP1 (ENSPCOG00000016918) #16	LIN9 (ENSPCOG00000007823) #17	MIXL1 (ENSPCOG00000024192) #18	ACBD3 (ENSPCOG00000010358) #19	ENSPCOG00000026943 ##20	SDE2 (ENSPCOG00000015642) #21	ENSPCOG00000028060 #22	PYCR2 (ENSPCOG00000018908) #23	ENSPCOG00000020232 #22	TMEM63A (ENSPCOG00000012985) #25	EPHX1 (ENSPCOG00000013150) #26	SRP9 (ENSPCOG00000021743) #27
Coquerels sifaka	MODERN SPECIES	304	SCCPDH (ENSPCOG00000019439)	AHCTF1 (ENSPCOG00000027036)	CDC42BPA (ENSPCOG00000027076) #10	COQ8A (ENSPCOG00000022285) #11	PSEN2 (ENSPCOG00000013955) #12	ITPKB (ENSPCOG00000028557) #13	STUM (ENSPCOG00000013568) #14	PARP1 (ENSPCOG00000016918) #16	LIN9 (ENSPCOG00000007823) #17	MIXL1 (ENSPCOG00000024192) #18	ACBD3 (ENSPCOG00000010358) #19	ENSPCOG00000026943 ##20	SDE2 (ENSPCOG00000015642) #21	ENSPCOG00000028060 #22	PYCR2 (ENSPCOG00000018908) #23	ENSPCOG00000020232 #22	TMEM63A (ENSPCOG00000012985) #25	EPHX1 (ENSPCOG00000013150) #26	SRP9 (ENSPCOG00000021743) #27
Mouse lemur	MODERN SPECIES	8	CNST (ENSMICG00000036496)	SCCPDH (ENSMICG00000014588)	ENSMICG00000034974	AHCTF1 (ENSMICG00000014617)	CDC42BPA (ENSMICG00000013466) #10	COQ8A (ENSMICG00000013440) #11	PSEN2 (ENSMICG00000013427) #12	ITPKB (ENSMICG00000038100) #13	STUM (ENSMICG00000042487) #14	PARP1 (ENSMICG00000017076) #16	LIN9 (ENSMICG00000017073) #17	MIXL1 (ENSMICG00000046165) #18	ACBD3 (ENSMICG00000035503) #19	H3-3A (ENSMICG00000044151) #20	SDE2 (ENSMICG00000004083) #21	ENSMICG00000041934 #22	PYCR2 (ENSMICG00000017416) #23	ENSMICG00000027213	TMEM63A (ENSMICG00000004058) #25	EPHX1 (ENSMICG00000034513) #26	ENSMICG00000030104 #27	ENSMICG00000009785	ENAH (ENSMICG00000010930) #28	LBR (ENSMICG00000010070) #29	ENSMICG00000031047	DNAH14 (ENSMICG00000037251) #30	CNIH3 (ENSMICG00000031871) #31	WDR26 (ENSMICG00000006896) #32	ENSMICG00000030956	CNIH4 (ENSMICG00000032337) #33	NVL (ENSMICG00000006602) #34
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	160	NUP133 (ENSOGAG00000006736)	ACTA1 (ENSOGAG00000016005)	ENSOGAG00000008357	RAB4A (ENSOGAG00000008356)	RHOU (ENSOGAG00000002345)	ENSOGAG00000027093	ENSOGAG00000026713 #14	ENSOGAG00000032900	PARP1 (ENSOGAG00000016206) #16	ENSOGAG00000007352 #17	MIXL1 (ENSOGAG00000027252) #18	ACBD3 (ENSOGAG00000004334) #19	ENSOGAG00000024312 ##20	SDE2 (ENSOGAG00000002069) #21	ENSOGAG00000033158	ENSOGAG00000002817 #22	VOPP1 (ENSOGAG00000008223)	LANCL2 (ENSOGAG00000009098)	EGFR (ENSOGAG00000009092)	ENSOGAG00000031014	SEC61G (ENSOGAG00000010262)	VSTM2A (ENSOGAG00000005539)
Bushbaby	MODERN SPECIES	160	ENSOGAG00000026713 #14	ENSOGAG00000027093	RHOU (ENSOGAG00000002345)	RAB4A (ENSOGAG00000008356)	ENSOGAG00000008357	ACTA1 (ENSOGAG00000016005)	NUP133 (ENSOGAG00000006736)	ENSOGAG00000006746	ENSOGAG00000003024	URB2 (ENSOGAG00000003021)	GALNT2 (ENSOGAG00000026642)	PGBD5 (ENSOGAG00000010600)	COG2 (ENSOGAG00000011283)	AGT (ENSOGAG00000011286)	PYCR2 (ENSOGAG00000024897) #23	ENSOGAG00000033220 #22	TMEM63A (ENSOGAG00000010346) #25	EPHX1 (ENSOGAG00000010341) #26	ENSOGAG00000001752 #27	ENAH (ENSOGAG00000031134) #28	LBR (ENSOGAG00000013724) #29	DNAH14 (ENSOGAG00000028956) #30	CNIH3 (ENSOGAG00000003349) #31	ENSOGAG00000029941	WDR26 (ENSOGAG00000015427) #32	CNIH4 (ENSOGAG00000008894) #33	NVL (ENSOGAG00000003955) #34	DEGS1 (ENSOGAG00000010827) #35	FBXO28 (ENSOGAG00000032645) #37	TP53BP2 (ENSOGAG00000012552)	CAPN2 (ENSOGAG00000012548)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	8788																ENSTBEG00000008328 #22	PYCR2 (ENSTBEG00000008382) #23
Tree shrew	MODERN SPECIES	2144																ENSTBEG00000000002 #22
Glires	ANCESTRAL SPECIES		ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT01100000263504.a.b.b.a.b.c ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Rodentia	ANCESTRAL SPECIES		ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Rodentia_B	ANCESTRAL SPECIES	45	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26
Myomorpha	ANCESTRAL SPECIES	16	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26
Muroidea	ANCESTRAL SPECIES	9	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Muroidea_A	DUPLICATION
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27
Golden Hamster	MODERN SPECIES	697	Sccpdh (ENSMAUG00000014050)	Kif28 (ENSMAUG00000011576)	Ahctf1 (ENSMAUG00000007505)	ENSMAUG00000018123	Cdc42bpa (ENSMAUG00000010864) #10	Coq8a (ENSMAUG00000016955) #11	Psen2 (ENSMAUG00000014629) #12	Itpkb (ENSMAUG00000013424) #13	Stum (ENSMAUG00000010054) #14	Parp1 (ENSMAUG00000008306) #16	Lin9 (ENSMAUG00000000458) #17	Mixl1 (ENSMAUG00000000244) #18	Acbd3 (ENSMAUG00000008514) #19	ENSMAUG00000019811 ##20	Sde2 (ENSMAUG00000019326) #21	Lefty2 (ENSMAUG00000018742) #22	Pycr2 (ENSMAUG00000017705) #23	Lefty1 (ENSMAUG00000009066) #22	ENSMAUG00000007599	ENSMAUG00000003804 #35	Nvl (ENSMAUG00000015157) #34	Cnih4 (ENSMAUG00000012691) #33	Wdr26 (ENSMAUG00000014280) #32	Cnih3 (ENSMAUG00000012379) #31	Ccdc121rt1 (ENSMAUG00000010926)	ENSMAUG00000014176 #30	Lbr (ENSMAUG00000012993) #29	Enah (ENSMAUG00000017836) #28	Srp9 (ENSMAUG00000017552) #27	Degs1 (ENSMAUG00000015951) #35	Fbxo28 (ENSMAUG00000017511) #37
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001016196	ENSCGRG00001014096	Kif28 (ENSCGRG00001022967)	Ahctf1 (ENSCGRG00001015843)	Cdc42bpa (ENSCGRG00001019928) #10	Coq8a (ENSCGRG00001022055) #11	Psen2 (ENSCGRG00001018733) #12	Itpkb (ENSCGRG00001024584) #13	Stum (ENSCGRG00001022399) #14	Parp1 (ENSCGRG00001020559) #16	Lin9 (ENSCGRG00001014165) #17	Mixl1 (ENSCGRG00001012768) #18	Acbd3 (ENSCGRG00001005103) #19	ENSCGRG00001021129 ##20	Sde2 (ENSCGRG00001018567) #21	Lefty2 (ENSCGRG00001017440) #22	Pycr2 (ENSCGRG00001024961) #23	Lefty1 (ENSCGRG00001024886) #22	Tmem63a (ENSCGRG00001022346) #25	Ephx1 (ENSCGRG00001023454) #26	9130409I23Rik (ENSCGRG00001023435) #35	ENSCGRG00001016864 #35	Nvl (ENSCGRG00001007917) #34	Cnih4 (ENSCGRG00001000385) #33	Wdr26 (ENSCGRG00001018374) #32	Cnih3 (ENSCGRG00001018492) #31	Ccdc121rt1 (ENSCGRG00001005549)	ENSCGRG00001009826 #30	Lbr (ENSCGRG00001022299) #29	Enah (ENSCGRG00001013627) #28	Srp9 (ENSCGRG00001008910) #27
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27
Prairie vole	MODERN SPECIES	14	Cnst (ENSMOCG00000006613)	Sccpdh (ENSMOCG00000017380)	Kif28 (ENSMOCG00000022053)	Ahctf1 (ENSMOCG00000004774)	Cdc42bpa (ENSMOCG00000019771) #10	Coq8a (ENSMOCG00000022622) #11	Psen2 (ENSMOCG00000021854) #12	Itpkb (ENSMOCG00000002630) #13	Stum (ENSMOCG00000020677) #14	Parp1 (ENSMOCG00000014315) #16	Lin9 (ENSMOCG00000021496) #17	Mixl1 (ENSMOCG00000022650) #18	Acbd3 (ENSMOCG00000021409) #19	ENSMOCG00000017501 ##20	Sde2 (ENSMOCG00000003863) #21	Lefty2 (ENSMOCG00000020511) #22	Pycr2 (ENSMOCG00000000522) #23	Lefty1 (ENSMOCG00000013803) #22	Tmem63a (ENSMOCG00000010850) #25	ENSMOCG00000002922 #26	9130409I23Rik (ENSMOCG00000021672) #35	Nvl (ENSMOCG00000017466) #34	Cnih4 (ENSMOCG00000014531) #33	Wdr26 (ENSMOCG00000018920) #32	Cnih3 (ENSMOCG00000011071) #31	ENSMOCG00000011930 #30	ENSMOCG00000009557	Enah (ENSMOCG00000016095) #28	ENSMOCG00000004862	ENSMOCG00000019142	Srp9 (ENSMOCG00000012590) #27
Northern American deer mouse	MODERN SPECIES	2	Sccpdh (ENSPEMG00000017539)	Kif28 (ENSPEMG00000014020)	ENSPEMG00000016591	Ahctf1 (ENSPEMG00000000305)	Cdc42bpa (ENSPEMG00000016582) #10	Coq8a (ENSPEMG00000010057) #11	Psen2 (ENSPEMG00000006562) #12	Itpkb (ENSPEMG00000000832) #13	Stum (ENSPEMG00000000087) #14	Parp1 (ENSPEMG00000020230) #16	Lin9 (ENSPEMG00000020176) #17	Mixl1 (ENSPEMG00000020007) #18	Acbd3 (ENSPEMG00000019971) #19	ENSPEMG00000019940 ##20	Sde2 (ENSPEMG00000001047) #21	Lefty2 (ENSPEMG00000018991) #22	Pycr2 (ENSPEMG00000018727) #23	Lefty1 (ENSPEMG00000026696) #22	Tmem63a (ENSPEMG00000016310) #25	ENSPEMG00000024494 #26	ENSPEMG00000025705 #26	9130409I23Rik (ENSPEMG00000011902) #35	ENSPEMG00000025337 #35	Nvl (ENSPEMG00000001236) #34	Cnih4 (ENSPEMG00000012374) #33	Wdr26 (ENSPEMG00000010249) #32	Cnih3 (ENSPEMG00000008307) #31	Ccdc121rt1 (ENSPEMG00000029360)	Dnah14 (ENSPEMG00000025670) #30	Lbr (ENSPEMG00000022439) #29	Enah (ENSPEMG00000022874) #28
Murinae	ANCESTRAL SPECIES	11	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27
Mus	ANCESTRAL SPECIES	5	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27
Mus_A	DUPLICATION
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT00860000135936	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT00860000135936	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00390000010056.y.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT00860000135936	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188.u #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28
spretus	MODERN SPECIES		Sccpdh (MGP_SPRETEiJ_G0015768)	Kif28 (MGP_SPRETEiJ_G0015769)	Ahctf1 (MGP_SPRETEiJ_G0015770)	MGP_SPRETEiJ_G0015771	Cdc42bpa (MGP_SPRETEiJ_G0015772) #10	Coq8a (MGP_SPRETEiJ_G0015773) #11	Psen2 (MGP_SPRETEiJ_G0015774) #12	Itpkb (MGP_SPRETEiJ_G0015775) #13	Stum (MGP_SPRETEiJ_G0015776) #14	Parp1 (MGP_SPRETEiJ_G0015777) #16	Lin9 (MGP_SPRETEiJ_G0015778) #17	Mixl1 (MGP_SPRETEiJ_G0015779) #18	Acbd3 (MGP_SPRETEiJ_G0015780) #19	MGP_SPRETEiJ_G0015781 ##20	Sde2 (MGP_SPRETEiJ_G0015782) #21	MGP_SPRETEiJ_G0015783 #22	MGP_SPRETEiJ_G0015784 #22	Pycr2 (MGP_SPRETEiJ_G0015785) #23	Tmem63a (MGP_SPRETEiJ_G0015786) #25	Ephx1 (MGP_SPRETEiJ_G0015787) #26	9130409I23Rik (MGP_SPRETEiJ_G0015788) #35	Nvl (MGP_SPRETEiJ_G0015789) #34	Cnih4 (MGP_SPRETEiJ_G0015790) #33	Wdr26 (MGP_SPRETEiJ_G0015791) #32	Cnih3 (MGP_SPRETEiJ_G0015792) #31	MGP_SPRETEiJ_G0015793	MGP_SPRETEiJ_G0015794 #30	Lbr (MGP_SPRETEiJ_G0015795) #29	Enah (MGP_SPRETEiJ_G0015796) #28	Srp9 (MGP_SPRETEiJ_G0015797) #27	Vmn1r1 (MGP_SPRETEiJ_G0015798)
Ryukyu mouse	MODERN SPECIES		Sccpdh (MGP_CAROLIEiJ_G0014969)	Kif28 (MGP_CAROLIEiJ_G0014970)	Ahctf1 (MGP_CAROLIEiJ_G0014971)	MGP_CAROLIEiJ_G0014972	Cdc42bpa (MGP_CAROLIEiJ_G0014973) #10	Coq8a (MGP_CAROLIEiJ_G0014974) #11	Psen2 (MGP_CAROLIEiJ_G0014975) #12	Itpkb (MGP_CAROLIEiJ_G0014976) #13	Stum (MGP_CAROLIEiJ_G0014977) #14	Parp1 (MGP_CAROLIEiJ_G0014978) #16	MGP_CAROLIEiJ_G0014979 #17	Mixl1 (MGP_CAROLIEiJ_G0014980) #18	Acbd3 (MGP_CAROLIEiJ_G0014981) #19	MGP_CAROLIEiJ_G0014982 ##20	Sde2 (MGP_CAROLIEiJ_G0014983) #21	MGP_CAROLIEiJ_G0014984 #22	MGP_CAROLIEiJ_G0014985 #22	Pycr2 (MGP_CAROLIEiJ_G0014986) #23	Tmem63a (MGP_CAROLIEiJ_G0014987) #25	Ephx1 (MGP_CAROLIEiJ_G0014988) #26	Nvl (MGP_CAROLIEiJ_G0014989) #34	Cnih4 (MGP_CAROLIEiJ_G0014990) #33	MGP_CAROLIEiJ_G0014991 #32	Cnih3 (MGP_CAROLIEiJ_G0014992) #31	Ccdc121rt1 (MGP_CAROLIEiJ_G0014993)	MGP_CAROLIEiJ_G0014994 #30	Lbr (MGP_CAROLIEiJ_G0014995) #29	Enah (MGP_CAROLIEiJ_G0014996) #28	Srp9 (MGP_CAROLIEiJ_G0014997) #27	Vmn1r1 (MGP_CAROLIEiJ_G0014998)	Degs1 (MGP_CAROLIEiJ_G0014999) #35
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000163104	ENSGT00390000018900	ENSGT00860000135936	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000163104	ENSGT00390000018900	ENSGT00860000135936	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00390000010056.y.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000163104	ENSGT00390000018900	ENSGT00860000135936	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188.u #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27
spretus	MODERN SPECIES		Kif28 (MGP_SPRETEiJ_G0015769)	Ahctf1 (MGP_SPRETEiJ_G0015770)	MGP_SPRETEiJ_G0015771	Cdc42bpa (MGP_SPRETEiJ_G0015772) #10	Coq8a (MGP_SPRETEiJ_G0015773) #11	Psen2 (MGP_SPRETEiJ_G0015774) #12	Itpkb (MGP_SPRETEiJ_G0015775) #13	Stum (MGP_SPRETEiJ_G0015776) #14	Parp1 (MGP_SPRETEiJ_G0015777) #16	Lin9 (MGP_SPRETEiJ_G0015778) #17	Mixl1 (MGP_SPRETEiJ_G0015779) #18	Acbd3 (MGP_SPRETEiJ_G0015780) #19	MGP_SPRETEiJ_G0015781 ##20	Sde2 (MGP_SPRETEiJ_G0015782) #21	MGP_SPRETEiJ_G0015783 #22	MGP_SPRETEiJ_G0015784 #22	Pycr2 (MGP_SPRETEiJ_G0015785) #23	Tmem63a (MGP_SPRETEiJ_G0015786) #25	Ephx1 (MGP_SPRETEiJ_G0015787) #26	9130409I23Rik (MGP_SPRETEiJ_G0015788) #35	Nvl (MGP_SPRETEiJ_G0015789) #34	Cnih4 (MGP_SPRETEiJ_G0015790) #33	Wdr26 (MGP_SPRETEiJ_G0015791) #32	Cnih3 (MGP_SPRETEiJ_G0015792) #31	MGP_SPRETEiJ_G0015793	MGP_SPRETEiJ_G0015794 #30	Lbr (MGP_SPRETEiJ_G0015795) #29	Enah (MGP_SPRETEiJ_G0015796) #28	Srp9 (MGP_SPRETEiJ_G0015797) #27	Vmn1r1 (MGP_SPRETEiJ_G0015798)	Degs1 (MGP_SPRETEiJ_G0015799) #35
Ryukyu mouse	MODERN SPECIES		Kif28 (MGP_CAROLIEiJ_G0014970)	Ahctf1 (MGP_CAROLIEiJ_G0014971)	MGP_CAROLIEiJ_G0014972	Cdc42bpa (MGP_CAROLIEiJ_G0014973) #10	Coq8a (MGP_CAROLIEiJ_G0014974) #11	Psen2 (MGP_CAROLIEiJ_G0014975) #12	Itpkb (MGP_CAROLIEiJ_G0014976) #13	Stum (MGP_CAROLIEiJ_G0014977) #14	Parp1 (MGP_CAROLIEiJ_G0014978) #16	MGP_CAROLIEiJ_G0014979 #17	Mixl1 (MGP_CAROLIEiJ_G0014980) #18	Acbd3 (MGP_CAROLIEiJ_G0014981) #19	MGP_CAROLIEiJ_G0014982 ##20	Sde2 (MGP_CAROLIEiJ_G0014983) #21	MGP_CAROLIEiJ_G0014984 #22	MGP_CAROLIEiJ_G0014985 #22	Pycr2 (MGP_CAROLIEiJ_G0014986) #23	Tmem63a (MGP_CAROLIEiJ_G0014987) #25	Ephx1 (MGP_CAROLIEiJ_G0014988) #26	Nvl (MGP_CAROLIEiJ_G0014989) #34	Cnih4 (MGP_CAROLIEiJ_G0014990) #33	MGP_CAROLIEiJ_G0014991 #32	Cnih3 (MGP_CAROLIEiJ_G0014992) #31	Ccdc121rt1 (MGP_CAROLIEiJ_G0014993)	MGP_CAROLIEiJ_G0014994 #30	Lbr (MGP_CAROLIEiJ_G0014995) #29	Enah (MGP_CAROLIEiJ_G0014996) #28	Srp9 (MGP_CAROLIEiJ_G0014997) #27	Vmn1r1 (MGP_CAROLIEiJ_G0014998)	Degs1 (MGP_CAROLIEiJ_G0014999) #35	Fbxo28 (MGP_CAROLIEiJ_G0015000) #37
Mus_A	ANCESTRAL SPECIES																	ENSGT00390000010056.y.b #22
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000018900	ENSGT00860000135936	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00390000010056.y.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27
Mouse	MODERN SPECIES		Cnst (ENSMUSG00000038949)	Sccpdh (ENSMUSG00000038936)	Kif28 (ENSMUSG00000087236)	Ahctf1 (ENSMUSG00000026491)	Cdc42bpa (ENSMUSG00000026490) #10	Coq8a (ENSMUSG00000026489) #11	Psen2 (ENSMUSG00000010609) #12	Itpkb (ENSMUSG00000038855) #13	Stum (ENSMUSG00000053963) #14	Parp1 (ENSMUSG00000026496) #16	Lin9 (ENSMUSG00000058729) #17	Mixl1 (ENSMUSG00000026497) #18	Acbd3 (ENSMUSG00000026499) #19	H3f3a (ENSMUSG00000060743) #20	Sde2 (ENSMUSG00000038806) #21	Lefty2 (ENSMUSG00000066652) #22	Pycr2 (ENSMUSG00000026520) #23	Lefty1 (ENSMUSG00000038793) #22	Tmem63a (ENSMUSG00000026519) #25	Ephx1 (ENSMUSG00000038776) #26	9130409I23Rik (ENSMUSG00000038768) #35	Nvl (ENSMUSG00000026516) #34	Cnih4 (ENSMUSG00000062169) #33	Wdr26 (ENSMUSG00000038733) #32	Cnih3 (ENSMUSG00000026514) #31	Ccdc121rt1 (ENSMUSG00000050625)	Dnah14 (ENSMUSG00000047369) #30	Lbr (ENSMUSG00000004880) #29	Enah (ENSMUSG00000022995) #28	Srp9 (ENSMUSG00000026511) #27	Vmn1r1 (ENSMUSG00000091013)
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000010056.y.b #22
Steppe mouse	MODERN SPECIES	3304	ENSMSIG00000005652	Kif28 (ENSMSIG00000005729)	Ahctf1 (ENSMSIG00000005983)	ENSMSIG00000006134	Cdc42bpa (ENSMSIG00000006204) #10	Coq8a (ENSMSIG00000007186) #11	Psen2 (ENSMSIG00000007254) #12	Itpkb (ENSMSIG00000007328) #13	Stum (ENSMSIG00000007366) #14	Parp1 (ENSMSIG00000007405) #16	ENSMSIG00000007488 #17	Mixl1 (ENSMSIG00000007539) #18	Acbd3 (ENSMSIG00000007560) #19	ENSMSIG00000007594 ##20	Sde2 (ENSMSIG00000007635) #21	Lefty2 (ENSMSIG00000007680) #22	Pycr2 (ENSMSIG00000007693) #23	Lefty1 (ENSMSIG00000007710) #22	Tmem63a (ENSMSIG00000007714) #25	Ephx1 (ENSMSIG00000007746) #26	ENSMSIG00000007797	ENSMSIG00000007826	9130409I23Rik (ENSMSIG00000007843) #35	ENSMSIG00000007861 #35	Nvl (ENSMSIG00000007946) #34	ENSMSIG00000008071 #33	Wdr26 (ENSMSIG00000008106) #32	ENSMSIG00000008233	Cnih3 (ENSMSIG00000008251) #31	Ccdc121rt1 (ENSMSIG00000008319)	Dnah14 (ENSMSIG00000008331) #30
Shrew mouse	MODERN SPECIES	18	Sccpdh (MGP_PahariEiJ_G0028200)	Kif28 (MGP_PahariEiJ_G0028201)	MGP_PahariEiJ_G0028202	MGP_PahariEiJ_G0028203	Cdc42bpa (MGP_PahariEiJ_G0028204) #10	Coq8a (MGP_PahariEiJ_G0028205) #11	Psen2 (MGP_PahariEiJ_G0028206) #12	Itpkb (MGP_PahariEiJ_G0028207) #13	Stum (MGP_PahariEiJ_G0028208) #14	MGP_PahariEiJ_G0028209 #16	Lin9 (MGP_PahariEiJ_G0028210) #17	Mixl1 (MGP_PahariEiJ_G0028211) #18	Acbd3 (MGP_PahariEiJ_G0028212) #19	MGP_PahariEiJ_G0028213 ##20	Sde2 (MGP_PahariEiJ_G0028214) #21	Lefty2 (MGP_PahariEiJ_G0028215) #22	MGP_PahariEiJ_G0028216 #22	Pycr2 (MGP_PahariEiJ_G0028217) #23	Tmem63a (MGP_PahariEiJ_G0028218) #25	MGP_PahariEiJ_G0028219 #26	9130409I23Rik (MGP_PahariEiJ_G0028220) #35	Nvl (MGP_PahariEiJ_G0028221) #34	Cnih4 (MGP_PahariEiJ_G0028222) #33	Wdr26 (MGP_PahariEiJ_G0028223) #32	Cnih3 (MGP_PahariEiJ_G0028224) #31	Ccdc121rt1 (MGP_PahariEiJ_G0028225)	MGP_PahariEiJ_G0028226 #30	Lbr (MGP_PahariEiJ_G0028227) #29	Enah (MGP_PahariEiJ_G0028228) #28	Srp9 (MGP_PahariEiJ_G0028229) #27	Vmn1r1 (MGP_PahariEiJ_G0028230)
Rat	MODERN SPECIES	4	Cnst (ENSRNOG00000002710)	Sccpdh (ENSRNOG00000066712)	Kif28p (ENSRNOG00000050602)	Ahctf1 (ENSRNOG00000023541)	Cdc42bpa (ENSRNOG00000002841) #10	Coq8a (ENSRNOG00000043201) #11	Psen2 (ENSRNOG00000002879) #12	Itpkb (ENSRNOG00000002969) #13	Stum (ENSRNOG00000071066) #14	Parp1 (ENSRNOG00000003084) #16	Lin9 (ENSRNOG00000023304) #17	Mixl1 (ENSRNOG00000003176) #18	Acbd3 (ENSRNOG00000003185) #19	H3f3b (ENSRNOG00000003220) #20	Sde2 (ENSRNOG00000003247) #21	Lefty2 (ENSRNOG00000060325) #22	Pycr2 (ENSRNOG00000003267) #23	Lefty1 (ENSRNOG00000003263) #22	Tmem63a (ENSRNOG00000003310) #25	Ephx1 (ENSRNOG00000003515) #26	LOC498300 (ENSRNOG00000050163) #35	RGD1564463 (ENSRNOG00000003601) #35	Nvl (ENSRNOG00000003629) #34	Cnih4 (ENSRNOG00000003717) #33	Wdr26 (ENSRNOG00000003723) #32	Cnih3 (ENSRNOG00000022724) #31	Ccdc121rt (ENSRNOG00000022717)	Dnah14 (ENSRNOG00000070092) #30	Lbr (ENSRNOG00000052574) #29	Enah (ENSRNOG00000031934) #28	Srp9 (ENSRNOG00000003211) #27
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #35
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #35
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #35
Chinese hamster chok1gshd	MODERN SPECIES	2	Kif28 (ENSCGRG00001022967)	Ahctf1 (ENSCGRG00001015843)	Cdc42bpa (ENSCGRG00001019928) #10	Coq8a (ENSCGRG00001022055) #11	Psen2 (ENSCGRG00001018733) #12	Itpkb (ENSCGRG00001024584) #13	Stum (ENSCGRG00001022399) #14	Parp1 (ENSCGRG00001020559) #16	Lin9 (ENSCGRG00001014165) #17	Mixl1 (ENSCGRG00001012768) #18	Acbd3 (ENSCGRG00001005103) #19	ENSCGRG00001021129 ##20	Sde2 (ENSCGRG00001018567) #21	Lefty2 (ENSCGRG00001017440) #22	Pycr2 (ENSCGRG00001024961) #23	Lefty1 (ENSCGRG00001024886) #22	Tmem63a (ENSCGRG00001022346) #25	Ephx1 (ENSCGRG00001023454) #26	9130409I23Rik (ENSCGRG00001023435) #35	ENSCGRG00001016864 #35	Nvl (ENSCGRG00001007917) #34	Cnih4 (ENSCGRG00001000385) #33	Wdr26 (ENSCGRG00001018374) #32	Cnih3 (ENSCGRG00001018492) #31	Ccdc121rt1 (ENSCGRG00001005549)	ENSCGRG00001009826 #30	Lbr (ENSCGRG00001022299) #29	Enah (ENSCGRG00001013627) #28	Srp9 (ENSCGRG00001008910) #27	Vmn1r1 (ENSCGRG00001010250)	Degs1 (ENSCGRG00001002610) #35
Golden Hamster	MODERN SPECIES	697	Ahctf1 (ENSMAUG00000007505)	ENSMAUG00000018123	Cdc42bpa (ENSMAUG00000010864) #10	Coq8a (ENSMAUG00000016955) #11	Psen2 (ENSMAUG00000014629) #12	Itpkb (ENSMAUG00000013424) #13	Stum (ENSMAUG00000010054) #14	Parp1 (ENSMAUG00000008306) #16	Lin9 (ENSMAUG00000000458) #17	Mixl1 (ENSMAUG00000000244) #18	Acbd3 (ENSMAUG00000008514) #19	ENSMAUG00000019811 ##20	Sde2 (ENSMAUG00000019326) #21	Lefty2 (ENSMAUG00000018742) #22	Pycr2 (ENSMAUG00000017705) #23	Lefty1 (ENSMAUG00000009066) #22	ENSMAUG00000007599	ENSMAUG00000003804 #35	Nvl (ENSMAUG00000015157) #34	Cnih4 (ENSMAUG00000012691) #33	Wdr26 (ENSMAUG00000014280) #32	Cnih3 (ENSMAUG00000012379) #31	Ccdc121rt1 (ENSMAUG00000010926)	ENSMAUG00000014176 #30	Lbr (ENSMAUG00000012993) #29	Enah (ENSMAUG00000017836) #28	Srp9 (ENSMAUG00000017552) #27	Degs1 (ENSMAUG00000015951) #35	Fbxo28 (ENSMAUG00000017511) #37	Trp53bp2 (ENSMAUG00000016823)	Capn2 (ENSMAUG00000012201)
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #35
Prairie vole	MODERN SPECIES	14	Kif28 (ENSMOCG00000022053)	Ahctf1 (ENSMOCG00000004774)	Cdc42bpa (ENSMOCG00000019771) #10	Coq8a (ENSMOCG00000022622) #11	Psen2 (ENSMOCG00000021854) #12	Itpkb (ENSMOCG00000002630) #13	Stum (ENSMOCG00000020677) #14	Parp1 (ENSMOCG00000014315) #16	Lin9 (ENSMOCG00000021496) #17	Mixl1 (ENSMOCG00000022650) #18	Acbd3 (ENSMOCG00000021409) #19	ENSMOCG00000017501 ##20	Sde2 (ENSMOCG00000003863) #21	Lefty2 (ENSMOCG00000020511) #22	Pycr2 (ENSMOCG00000000522) #23	Lefty1 (ENSMOCG00000013803) #22	Tmem63a (ENSMOCG00000010850) #25	ENSMOCG00000002922 #26	9130409I23Rik (ENSMOCG00000021672) #35	Nvl (ENSMOCG00000017466) #34	Cnih4 (ENSMOCG00000014531) #33	Wdr26 (ENSMOCG00000018920) #32	Cnih3 (ENSMOCG00000011071) #31	ENSMOCG00000011930 #30	ENSMOCG00000009557	Enah (ENSMOCG00000016095) #28	ENSMOCG00000004862	ENSMOCG00000019142	Srp9 (ENSMOCG00000012590) #27	Degs1 (ENSMOCG00000021480) #35	Fbxo28 (ENSMOCG00000006258) #37
Northern American deer mouse	MODERN SPECIES	2	ENSPEMG00000016591	Ahctf1 (ENSPEMG00000000305)	Cdc42bpa (ENSPEMG00000016582) #10	Coq8a (ENSPEMG00000010057) #11	Psen2 (ENSPEMG00000006562) #12	Itpkb (ENSPEMG00000000832) #13	Stum (ENSPEMG00000000087) #14	Parp1 (ENSPEMG00000020230) #16	Lin9 (ENSPEMG00000020176) #17	Mixl1 (ENSPEMG00000020007) #18	Acbd3 (ENSPEMG00000019971) #19	ENSPEMG00000019940 ##20	Sde2 (ENSPEMG00000001047) #21	Lefty2 (ENSPEMG00000018991) #22	Pycr2 (ENSPEMG00000018727) #23	Lefty1 (ENSPEMG00000026696) #22	Tmem63a (ENSPEMG00000016310) #25	ENSPEMG00000024494 #26	ENSPEMG00000025705 #26	9130409I23Rik (ENSPEMG00000011902) #35	ENSPEMG00000025337 #35	Nvl (ENSPEMG00000001236) #34	Cnih4 (ENSPEMG00000012374) #33	Wdr26 (ENSPEMG00000010249) #32	Cnih3 (ENSPEMG00000008307) #31	Ccdc121rt1 (ENSPEMG00000029360)	Dnah14 (ENSPEMG00000025670) #30	Lbr (ENSPEMG00000022439) #29	Enah (ENSPEMG00000022874) #28	Srp9 (ENSPEMG00000022774) #27	Vmn1r1 (ENSPEMG00000030686)
Murinae	ANCESTRAL SPECIES	11	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #35
Mus	ANCESTRAL SPECIES	5	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #35
Mus_A	ANCESTRAL SPECIES	5	ENSGT00860000135936	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #35
Mus_B	ANCESTRAL SPECIES	7	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00390000010056.y.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #35
Mouse	MODERN SPECIES		Kif28 (ENSMUSG00000087236)	Ahctf1 (ENSMUSG00000026491)	Cdc42bpa (ENSMUSG00000026490) #10	Coq8a (ENSMUSG00000026489) #11	Psen2 (ENSMUSG00000010609) #12	Itpkb (ENSMUSG00000038855) #13	Stum (ENSMUSG00000053963) #14	Parp1 (ENSMUSG00000026496) #16	Lin9 (ENSMUSG00000058729) #17	Mixl1 (ENSMUSG00000026497) #18	Acbd3 (ENSMUSG00000026499) #19	H3f3a (ENSMUSG00000060743) #20	Sde2 (ENSMUSG00000038806) #21	Lefty2 (ENSMUSG00000066652) #22	Pycr2 (ENSMUSG00000026520) #23	Lefty1 (ENSMUSG00000038793) #22	Tmem63a (ENSMUSG00000026519) #25	Ephx1 (ENSMUSG00000038776) #26	9130409I23Rik (ENSMUSG00000038768) #35	Nvl (ENSMUSG00000026516) #34	Cnih4 (ENSMUSG00000062169) #33	Wdr26 (ENSMUSG00000038733) #32	Cnih3 (ENSMUSG00000026514) #31	Ccdc121rt1 (ENSMUSG00000050625)	Dnah14 (ENSMUSG00000047369) #30	Lbr (ENSMUSG00000004880) #29	Enah (ENSMUSG00000022995) #28	Srp9 (ENSMUSG00000026511) #27	Vmn1r1 (ENSMUSG00000091013)	Degs1 (ENSMUSG00000038633) #35	Fbxo28 (ENSMUSG00000047539) #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00860000135936	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188.u #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.tb ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.y.a.a #22	ENSGT00390000010056.y.a.b #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.z #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013448.a.a.j.a #35	ENSGT00390000013448.a.a.j.b #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT01000000214622.a.a.a	ENSGT00940000160505 #30	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505.b #27	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000013448.a.a.i #35
Steppe mouse	MODERN SPECIES	3304	Ahctf1 (ENSMSIG00000005983)	ENSMSIG00000006134	Cdc42bpa (ENSMSIG00000006204) #10	Coq8a (ENSMSIG00000007186) #11	Psen2 (ENSMSIG00000007254) #12	Itpkb (ENSMSIG00000007328) #13	Stum (ENSMSIG00000007366) #14	Parp1 (ENSMSIG00000007405) #16	ENSMSIG00000007488 #17	Mixl1 (ENSMSIG00000007539) #18	Acbd3 (ENSMSIG00000007560) #19	ENSMSIG00000007594 ##20	Sde2 (ENSMSIG00000007635) #21	Lefty2 (ENSMSIG00000007680) #22	Pycr2 (ENSMSIG00000007693) #23	Lefty1 (ENSMSIG00000007710) #22	Tmem63a (ENSMSIG00000007714) #25	Ephx1 (ENSMSIG00000007746) #26	ENSMSIG00000007797	ENSMSIG00000007826	9130409I23Rik (ENSMSIG00000007843) #35	ENSMSIG00000007861 #35	Nvl (ENSMSIG00000007946) #34	ENSMSIG00000008071 #33	Wdr26 (ENSMSIG00000008106) #32	ENSMSIG00000008233	Cnih3 (ENSMSIG00000008251) #31	Ccdc121rt1 (ENSMSIG00000008319)	Dnah14 (ENSMSIG00000008331) #30	Lbr (ENSMSIG00000008545) #29	Enah (ENSMSIG00000008601) #28
Shrew mouse	MODERN SPECIES	18	Kif28 (MGP_PahariEiJ_G0028201)	MGP_PahariEiJ_G0028202	MGP_PahariEiJ_G0028203	Cdc42bpa (MGP_PahariEiJ_G0028204) #10	Coq8a (MGP_PahariEiJ_G0028205) #11	Psen2 (MGP_PahariEiJ_G0028206) #12	Itpkb (MGP_PahariEiJ_G0028207) #13	Stum (MGP_PahariEiJ_G0028208) #14	MGP_PahariEiJ_G0028209 #16	Lin9 (MGP_PahariEiJ_G0028210) #17	Mixl1 (MGP_PahariEiJ_G0028211) #18	Acbd3 (MGP_PahariEiJ_G0028212) #19	MGP_PahariEiJ_G0028213 ##20	Sde2 (MGP_PahariEiJ_G0028214) #21	Lefty2 (MGP_PahariEiJ_G0028215) #22	MGP_PahariEiJ_G0028216 #22	Pycr2 (MGP_PahariEiJ_G0028217) #23	Tmem63a (MGP_PahariEiJ_G0028218) #25	MGP_PahariEiJ_G0028219 #26	9130409I23Rik (MGP_PahariEiJ_G0028220) #35	Nvl (MGP_PahariEiJ_G0028221) #34	Cnih4 (MGP_PahariEiJ_G0028222) #33	Wdr26 (MGP_PahariEiJ_G0028223) #32	Cnih3 (MGP_PahariEiJ_G0028224) #31	Ccdc121rt1 (MGP_PahariEiJ_G0028225)	MGP_PahariEiJ_G0028226 #30	Lbr (MGP_PahariEiJ_G0028227) #29	Enah (MGP_PahariEiJ_G0028228) #28	Srp9 (MGP_PahariEiJ_G0028229) #27	Vmn1r1 (MGP_PahariEiJ_G0028230)	Degs1 (MGP_PahariEiJ_G0028231) #35
Rat	MODERN SPECIES	4	Kif28p (ENSRNOG00000050602)	Ahctf1 (ENSRNOG00000023541)	Cdc42bpa (ENSRNOG00000002841) #10	Coq8a (ENSRNOG00000043201) #11	Psen2 (ENSRNOG00000002879) #12	Itpkb (ENSRNOG00000002969) #13	Stum (ENSRNOG00000071066) #14	Parp1 (ENSRNOG00000003084) #16	Lin9 (ENSRNOG00000023304) #17	Mixl1 (ENSRNOG00000003176) #18	Acbd3 (ENSRNOG00000003185) #19	H3f3b (ENSRNOG00000003220) #20	Sde2 (ENSRNOG00000003247) #21	Lefty2 (ENSRNOG00000060325) #22	Pycr2 (ENSRNOG00000003267) #23	Lefty1 (ENSRNOG00000003263) #22	Tmem63a (ENSRNOG00000003310) #25	Ephx1 (ENSRNOG00000003515) #26	LOC498300 (ENSRNOG00000050163) #35	RGD1564463 (ENSRNOG00000003601) #35	Nvl (ENSRNOG00000003629) #34	Cnih4 (ENSRNOG00000003717) #33	Wdr26 (ENSRNOG00000003723) #32	Cnih3 (ENSRNOG00000022724) #31	Ccdc121rt (ENSRNOG00000022717)	Dnah14 (ENSRNOG00000070092) #30	Lbr (ENSRNOG00000052574) #29	Enah (ENSRNOG00000031934) #28	Srp9 (ENSRNOG00000003211) #27	Degs1 (ENSRNOG00000003223) #35	Fbxo28 (ENSRNOG00000000066) #37
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1795		Cdc42bpa (ENSNGAG00000016580) #10	ENSNGAG00000015462	Coq8a (ENSNGAG00000022006) #11	Psen2 (ENSNGAG00000023668) #12	ENSNGAG00000004558	Itpkb (ENSNGAG00000006387) #13	Stum (ENSNGAG00000007799) #14	Parp1 (ENSNGAG00000003885) #16	Lin9 (ENSNGAG00000010078) #17	Mixl1 (ENSNGAG00000018300) #18	Acbd3 (ENSNGAG00000019285) #19	ENSNGAG00000008728 ##20	Sde2 (ENSNGAG00000022889) #21	ENSNGAG00000006685	ENSNGAG00000023800 #22	Pycr2 (ENSNGAG00000004193) #23	ENSNGAG00000007205 #22	Tmem63a (ENSNGAG00000010999) #25	ENSNGAG00000013471 #26	ENSNGAG00000007235 #26
Upper Galilee mountains blind mole rat	MODERN SPECIES	1795	ENSNGAG00000015462	Coq8a (ENSNGAG00000022006) #11	Psen2 (ENSNGAG00000023668) #12	ENSNGAG00000004558	Itpkb (ENSNGAG00000006387) #13	Stum (ENSNGAG00000007799) #14	Parp1 (ENSNGAG00000003885) #16	Lin9 (ENSNGAG00000010078) #17	Mixl1 (ENSNGAG00000018300) #18	Acbd3 (ENSNGAG00000019285) #19	ENSNGAG00000008728 ##20	Sde2 (ENSNGAG00000022889) #21	ENSNGAG00000006685	ENSNGAG00000023800 #22	Pycr2 (ENSNGAG00000004193) #23	ENSNGAG00000007205 #22	Tmem63a (ENSNGAG00000010999) #25	ENSNGAG00000013471 #26	ENSNGAG00000007235 #26
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	51	Cnst (ENSJJAG00000019924)	Sccpdh (ENSJJAG00000016528)	Kif28 (ENSJJAG00000009428)	Ahctf1 (ENSJJAG00000015815)	Cdc42bpa (ENSJJAG00000010408) #10	Coq8a (ENSJJAG00000001225) #11	Psen2 (ENSJJAG00000023570) #12	Itpkb (ENSJJAG00000010265) #13	Stum (ENSJJAG00000021582) #14	Parp1 (ENSJJAG00000023497) #16	Lin9 (ENSJJAG00000019828) #17	ENSJJAG00000018401 #18	Acbd3 (ENSJJAG00000014401) #19	ENSJJAG00000000867 ##20	Sde2 (ENSJJAG00000002996) #21	ENSJJAG00000011178 #22	Pycr2 (ENSJJAG00000014536) #23	ENSJJAG00000009374 #22	Tmem63a (ENSJJAG00000016345) #25	Ephx1 (ENSJJAG00000022906) #26	ENSJJAG00000022098	ENSJJAG00000000689 #35	Nvl (ENSJJAG00000003012) #34	ENSJJAG00000020517 #33	Wdr26 (ENSJJAG00000019959) #32	Cnih3 (ENSJJAG00000023601) #31	Dnah14 (ENSJJAG00000023244) #30	ENSJJAG00000007609	ENSJJAG00000023116	Enah (ENSJJAG00000023846) #28	Srp9 (ENSJJAG00000016583) #27
Lesser Egyptian jerboa	MODERN SPECIES	51	Kif28 (ENSJJAG00000009428)	Ahctf1 (ENSJJAG00000015815)	Cdc42bpa (ENSJJAG00000010408) #10	Coq8a (ENSJJAG00000001225) #11	Psen2 (ENSJJAG00000023570) #12	Itpkb (ENSJJAG00000010265) #13	Stum (ENSJJAG00000021582) #14	Parp1 (ENSJJAG00000023497) #16	Lin9 (ENSJJAG00000019828) #17	ENSJJAG00000018401 #18	Acbd3 (ENSJJAG00000014401) #19	ENSJJAG00000000867 ##20	Sde2 (ENSJJAG00000002996) #21	ENSJJAG00000011178 #22	Pycr2 (ENSJJAG00000014536) #23	ENSJJAG00000009374 #22	Tmem63a (ENSJJAG00000016345) #25	Ephx1 (ENSJJAG00000022906) #26	ENSJJAG00000022098	ENSJJAG00000000689 #35	Nvl (ENSJJAG00000003012) #34	ENSJJAG00000020517 #33	Wdr26 (ENSJJAG00000019959) #32	Cnih3 (ENSJJAG00000023601) #31	Dnah14 (ENSJJAG00000023244) #30	ENSJJAG00000007609	ENSJJAG00000023116	Enah (ENSJJAG00000023846) #28	Srp9 (ENSJJAG00000016583) #27	ENSJJAG00000015313 #35	Fbxo28 (ENSJJAG00000010586) #37
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Hystricomorpha	ANCESTRAL SPECIES	29	ENSGT00940000159420.b	ENSGT00530000063876.a	ENSGT00530000063629.a	ENSGT00940000155793	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00390000002089.a.b	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c.f #23
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000000295	ENSHGLG00000000284	LYN (ENSHGLG00000002926)	ENSHGLG00000033196	MOS (ENSHGLG00000049453)	PLAG1 (ENSHGLG00000001672)	ENSHGLG00000035038	Parp1 (ENSHGLG00000003992) #16	LIN9 (ENSHGLG00000007823) #17	MIXL1 (ENSHGLG00000045669) #18	ENSHGLG00000041314	ACBD3 (ENSHGLG00000005012) #19	ENSHGLG00000048882	ENSHGLG00000035710 ##20	SDE2 (ENSHGLG00000003670) #21	ENSHGLG00000003338 #22	ENSHGLG00000036089	ENSHGLG00000039078 #23	ENSHGLG00000006919	INTS3 (ENSHGLG00000008354)	ENSHGLG00000041750	NPR1 (ENSHGLG00000009046)	ILF2 (ENSHGLG00000004134)	SNAPIN (ENSHGLG00000043471)	ENSHGLG00000042410	CHTOP (ENSHGLG00000010389)	S100A1 (ENSHGLG00000044434)	S100A14 (ENSHGLG00000008860)	ENSHGLG00000009571	S100A3 (ENSHGLG00000033057)	S100A4 (ENSHGLG00000016459)
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00940000159420.b	ENSGT00530000063876.a	ENSGT00530000063629.a	ENSGT00940000155793	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00390000002089.a.b	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c.f #23
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00940000159420.b	ENSGT00530000063876.a	ENSGT00530000063629.a	ENSGT00940000155793	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00390000002089.a.b	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c.f #23
Degu	MODERN SPECIES	172	HHAT (ENSODEG00000006027)	KCNH1 (ENSODEG00000006391)	RCOR3 (ENSODEG00000007158)	TRAF5 (ENSODEG00000010010)	RD3 (ENSODEG00000010438)	ITPKB (ENSODEG00000006556) #13	STUM (ENSODEG00000006865) #14	PARP1 (ENSODEG00000007424) #16	LIN9 (ENSODEG00000007495) #17	ENSODEG00000006883 #18	ACBD3 (ENSODEG00000007029) #19	ENSODEG00000007126	ENSODEG00000006347 #20	ENSODEG00000006974	SDE2 (ENSODEG00000007391) #21	ENSODEG00000008453 #22	ENSODEG00000006478 #23	ENSODEG00000009205
Long-tailed chinchilla	MODERN SPECIES	196	ENSCLAG00000003749	HHAT (ENSCLAG00000003158)	ENSCLAG00000003578	KCNH1 (ENSCLAG00000003074)	RCOR3 (ENSCLAG00000002506)	TRAF5 (ENSCLAG00000005710)	ENSCLAG00000004308	ITPKB (ENSCLAG00000004247) #13	STUM (ENSCLAG00000003663) #14	PARP1 (ENSCLAG00000006637) #16	LIN9 (ENSCLAG00000005536) #17	ENSCLAG00000005251 #18	ACBD3 (ENSCLAG00000004643) #19	ENSCLAG00000003662 ##20	SDE2 (ENSCLAG00000003280) #21	ENSCLAG00000003115 #22	PYCR2 (ENSCLAG00000002964) #23
Guinea pig	MODERN SPECIES	137	HTR7 (ENSCPOG00000007482)	RPP30 (ENSCPOG00000033174)	ANKRD1 (ENSCPOG00000002565)	PCGF5 (ENSCPOG00000013156)	HECTD2 (ENSCPOG00000008922)	PPP1R3C (ENSCPOG00000038237)	RD3 (ENSCPOG00000022572)	ITPKB (ENSCPOG00000013483) #13	STUM (ENSCPOG00000031019) #14	PARP1 (ENSCPOG00000015643) #16	LIN9 (ENSCPOG00000015642) #17	ACBD3 (ENSCPOG00000007184) #19	ENSCPOG00000039202 ##20	ENSCPOG00000025231	SDE2 (ENSCPOG00000014756) #21	ENSCPOG00000014755 #22	PYCR2 (ENSCPOG00000005663) #23
Sciuridae	DUPLICATION
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Marmotini	ANCESTRAL SPECIES	21	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a.n #35	ENSGT00390000013448.a.a.m.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Marmotini_b	ANCESTRAL SPECIES	84	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a.n #35	ENSGT00390000013448.a.a.m.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Squirrel	MODERN SPECIES	126	AHCTF1 (ENSSTOG00000010795)	CDC42BPA (ENSSTOG00000015415) #10	COQ8A (ENSSTOG00000015395) #11	PSEN2 (ENSSTOG00000025166) #12	ENSSTOG00000033187	ITPKB (ENSSTOG00000019688) #13	STUM (ENSSTOG00000004805) #14	PARP1 (ENSSTOG00000016000) #16	LIN9 (ENSSTOG00000015992) #17	MIXL1 (ENSSTOG00000019392) #18	ACBD3 (ENSSTOG00000005981) #19	ENSSTOG00000026628 ##20	SDE2 (ENSSTOG00000012572) #21	ENSSTOG00000032692 #22	PYCR2 (ENSSTOG00000026618) #23	ENSSTOG00000024360 #22	TMEM63A (ENSSTOG00000028603) #25	EPHX1 (ENSSTOG00000026627) #26	SRP9 (ENSSTOG00000026827) #27	ENAH (ENSSTOG00000028215) #28	LBR (ENSSTOG00000005936) #29	DNAH14 (ENSSTOG00000021317) #30	CNIH3 (ENSSTOG00000028458) #31	WDR26 (ENSSTOG00000021796) #32	CNIH4 (ENSSTOG00000027396) #33	NVL (ENSSTOG00000014728) #34	ENSSTOG00000031649 #35	ENSSTOG00000021334	ENSSTOG00000025481 #35	FBXO28 (ENSSTOG00000009419) #37	TP53BP2 (ENSSTOG00000009398)
Arctic ground squirrel	MODERN SPECIES	325	ENSUPAG00010000500	AHCTF1 (ENSUPAG00010000506)	CDC42BPA (ENSUPAG00010000636) #10	COQ8A (ENSUPAG00010002144) #11	PSEN2 (ENSUPAG00010002205) #12	ITPKB (ENSUPAG00010002261) #13	STUM (ENSUPAG00010002286) #14	PARP1 (ENSUPAG00010002304) #16	LIN9 (ENSUPAG00010002320) #17	MIXL1 (ENSUPAG00010002339) #18	ACBD3 (ENSUPAG00010002347) #19	ENSUPAG00010002363 ##20	SDE2 (ENSUPAG00010002379) #21	ENSUPAG00010002390 #22	PYCR2 (ENSUPAG00010002405) #23	ENSUPAG00010002430 #22	TMEM63A (ENSUPAG00010002441) #25	EPHX1 (ENSUPAG00010002463) #26	SRP9 (ENSUPAG00010002484) #27	ENAH (ENSUPAG00010002499) #28	LBR (ENSUPAG00010002925) #29	ENSUPAG00010002965 #30	ENSUPAG00010002969 #30
Alpin marmot	MODERN SPECIES	12	CDC42BPA (ENSMMMG00000024041) #10	COQ8A (ENSMMMG00000024059) #11	PSEN2 (ENSMMMG00000024062) #12	ITPKB (ENSMMMG00000024065) #13	STUM (ENSMMMG00000024066) #14	ENSMMMG00000024067	ENSMMMG00000024068	PARP1 (ENSMMMG00000024069) #16	LIN9 (ENSMMMG00000024070) #17	MIXL1 (ENSMMMG00000024071) #18	ACBD3 (ENSMMMG00000024072) #19	ENSMMMG00000024073 ##20	SDE2 (ENSMMMG00000024074) #21	ENSMMMG00000024075 #22	PYCR2 (ENSMMMG00000024076) #23	ENSMMMG00000024077 #22	TMEM63A (ENSMMMG00000024078) #25	EPHX1 (ENSMMMG00000024079) #26	SRP9 (ENSMMMG00000024080) #27	ENAH (ENSMMMG00000024082) #28	LBR (ENSMMMG00000024148) #29	ENSMMMG00000024149 #30	ENSMMMG00000024150 #30	ENSMMMG00000024151	CNIH3 (ENSMMMG00000024152) #31	WDR26 (ENSMMMG00000024153) #32	CNIH4 (ENSMMMG00000024154) #33	NVL (ENSMMMG00000024155) #34	ENSMMMG00000024156	ENSMMMG00000024157	DEGS1 (ENSMMMG00000024159) #35
Eurasian red squirrel	MODERN SPECIES	3	ENSSVLG00005009948	COQ8A (ENSSVLG00005009997) #11	ENSSVLG00005010048	PSEN2 (ENSSVLG00005010078) #12	ITPKB (ENSSVLG00005010130) #13	STUM (ENSSVLG00005010162) #14	PARP1 (ENSSVLG00005010193) #16	ENSSVLG00005010227	ENSSVLG00005010350 #17	MIXL1 (ENSSVLG00005010553) #18	ACBD3 (ENSSVLG00005010595) #19	ENSSVLG00005010668 ##20	SDE2 (ENSSVLG00005010717) #21	ENSSVLG00005010786 #22	PYCR2 (ENSSVLG00005010901) #23	ENSSVLG00005010994 #22	TMEM63A (ENSSVLG00005011067) #25	EPHX1 (ENSSVLG00005011131) #26	SRP9 (ENSSVLG00005011178) #27	ENAH (ENSSVLG00005011282) #28	BOP1 (ENSSVLG00005011521)	ENSSVLG00005011588	ENSSVLG00005011663	ENSSVLG00005011720	ENSSVLG00005011796	LBR (ENSSVLG00005012135) #29	ENSSVLG00005012197 #30	ENSSVLG00005012320 #30	ENSSVLG00005012453	CNIH3 (ENSSVLG00005012576) #31	WDR26 (ENSSVLG00005012677) #32
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37
Marmotini	ANCESTRAL SPECIES	21	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a.n #35	ENSGT00390000013448.a.a.m.a #35
Marmotini_b	ANCESTRAL SPECIES	84	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b.c.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.eb #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.db #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a.n #35	ENSGT00390000013448.a.a.m.a #35	ENSGT00390000002970 #37
Arctic ground squirrel	MODERN SPECIES	325			ENSUPAG00010000500	AHCTF1 (ENSUPAG00010000506)	CDC42BPA (ENSUPAG00010000636) #10	COQ8A (ENSUPAG00010002144) #11	PSEN2 (ENSUPAG00010002205) #12	ITPKB (ENSUPAG00010002261) #13	STUM (ENSUPAG00010002286) #14	PARP1 (ENSUPAG00010002304) #16	LIN9 (ENSUPAG00010002320) #17	MIXL1 (ENSUPAG00010002339) #18	ACBD3 (ENSUPAG00010002347) #19	ENSUPAG00010002363 ##20	SDE2 (ENSUPAG00010002379) #21	ENSUPAG00010002390 #22	PYCR2 (ENSUPAG00010002405) #23	ENSUPAG00010002430 #22	TMEM63A (ENSUPAG00010002441) #25	EPHX1 (ENSUPAG00010002463) #26	SRP9 (ENSUPAG00010002484) #27	ENAH (ENSUPAG00010002499) #28	LBR (ENSUPAG00010002925) #29	ENSUPAG00010002965 #30	ENSUPAG00010002969 #30
Squirrel	MODERN SPECIES	126	SCCPDH (ENSSTOG00000007502)	ENSSTOG00000021998	AHCTF1 (ENSSTOG00000010795)	CDC42BPA (ENSSTOG00000015415) #10	COQ8A (ENSSTOG00000015395) #11	PSEN2 (ENSSTOG00000025166) #12	ENSSTOG00000033187	ITPKB (ENSSTOG00000019688) #13	STUM (ENSSTOG00000004805) #14	PARP1 (ENSSTOG00000016000) #16	LIN9 (ENSSTOG00000015992) #17	MIXL1 (ENSSTOG00000019392) #18	ACBD3 (ENSSTOG00000005981) #19	ENSSTOG00000026628 ##20	SDE2 (ENSSTOG00000012572) #21	ENSSTOG00000032692 #22	PYCR2 (ENSSTOG00000026618) #23	ENSSTOG00000024360 #22	TMEM63A (ENSSTOG00000028603) #25	EPHX1 (ENSSTOG00000026627) #26	SRP9 (ENSSTOG00000026827) #27	ENAH (ENSSTOG00000028215) #28	LBR (ENSSTOG00000005936) #29	DNAH14 (ENSSTOG00000021317) #30	CNIH3 (ENSSTOG00000028458) #31	WDR26 (ENSSTOG00000021796) #32	CNIH4 (ENSSTOG00000027396) #33	NVL (ENSSTOG00000014728) #34	ENSSTOG00000031649 #35	ENSSTOG00000021334	ENSSTOG00000025481 #35
Alpin marmot	MODERN SPECIES	12	ENSMMMG00000024027	AHCTF1 (ENSMMMG00000024028)	CDC42BPA (ENSMMMG00000024041) #10	COQ8A (ENSMMMG00000024059) #11	PSEN2 (ENSMMMG00000024062) #12	ITPKB (ENSMMMG00000024065) #13	STUM (ENSMMMG00000024066) #14	ENSMMMG00000024067	ENSMMMG00000024068	PARP1 (ENSMMMG00000024069) #16	LIN9 (ENSMMMG00000024070) #17	MIXL1 (ENSMMMG00000024071) #18	ACBD3 (ENSMMMG00000024072) #19	ENSMMMG00000024073 ##20	SDE2 (ENSMMMG00000024074) #21	ENSMMMG00000024075 #22	PYCR2 (ENSMMMG00000024076) #23	ENSMMMG00000024077 #22	TMEM63A (ENSMMMG00000024078) #25	EPHX1 (ENSMMMG00000024079) #26	SRP9 (ENSMMMG00000024080) #27	ENAH (ENSMMMG00000024082) #28	LBR (ENSMMMG00000024148) #29	ENSMMMG00000024149 #30	ENSMMMG00000024150 #30	ENSMMMG00000024151	CNIH3 (ENSMMMG00000024152) #31	WDR26 (ENSMMMG00000024153) #32	CNIH4 (ENSMMMG00000024154) #33	NVL (ENSMMMG00000024155) #34	ENSMMMG00000024156
Eurasian red squirrel	MODERN SPECIES	3	AHCTF1 (ENSSVLG00005009197)	CDC42BPA (ENSSVLG00005009702) #10	ENSSVLG00005009948	COQ8A (ENSSVLG00005009997) #11	ENSSVLG00005010048	PSEN2 (ENSSVLG00005010078) #12	ITPKB (ENSSVLG00005010130) #13	STUM (ENSSVLG00005010162) #14	PARP1 (ENSSVLG00005010193) #16	ENSSVLG00005010227	ENSSVLG00005010350 #17	MIXL1 (ENSSVLG00005010553) #18	ACBD3 (ENSSVLG00005010595) #19	ENSSVLG00005010668 ##20	SDE2 (ENSSVLG00005010717) #21	ENSSVLG00005010786 #22	PYCR2 (ENSSVLG00005010901) #23	ENSSVLG00005010994 #22	TMEM63A (ENSSVLG00005011067) #25	EPHX1 (ENSSVLG00005011131) #26	SRP9 (ENSSVLG00005011178) #27	ENAH (ENSSVLG00005011282) #28	BOP1 (ENSSVLG00005011521)	ENSSVLG00005011588	ENSSVLG00005011663	ENSSVLG00005011720	ENSSVLG00005011796	LBR (ENSSVLG00005012135) #29	ENSSVLG00005012197 #30	ENSSVLG00005012320 #30	ENSSVLG00005012453
Lagomorpha	ANCESTRAL SPECIES	199										ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	7	CAPN2 (ENSOCUG00000004612)	TP53BP2 (ENSOCUG00000004626)	FBXO28 (ENSOCUG00000004012) #37	ENSOCUG00000023942 #35	NVL (ENSOCUG00000005530) #34	CNIH4 (ENSOCUG00000000520) #33	WDR26 (ENSOCUG00000003294) #32	CNIH3 (ENSOCUG00000007694) #31	PARP1 (ENSOCUG00000017820) #16	LIN9 (ENSOCUG00000010028) #17	ENSOCUG00000022544	MIXL1 (ENSOCUG00000000103) #18	ACBD3 (ENSOCUG00000014391) #19	ENSOCUG00000024644 ##20	SDE2 (ENSOCUG00000001919) #21	ENSOCUG00000023218 #22	PYCR2 (ENSOCUG00000001915) #23	ENSOCUG00000021555 #22	TMEM63A (ENSOCUG00000001907) #25	EPHX1 (ENSOCUG00000011934) #26	SRP9 (ENSOCUG00000010791) #27	ENAH (ENSOCUG00000002299) #28	LBR (ENSOCUG00000000285) #29	ENSOCUG00000032314 #30	ENSOCUG00000038705 #30	ENSOCUG00000030155	ITPKB (ENSOCUG00000004970) #13	ENSOCUG00000029073 #14	ENSOCUG00000032837	ENSOCUG00000024367	ENSOCUG00000016466
Rabbit	MODERN SPECIES	7	MEIG1 (ENSOCUG00000010165)	ENSOCUG00000021476	ENSOCUG00000016466	ENSOCUG00000024367	ENSOCUG00000032837	ENSOCUG00000029073 #14	ITPKB (ENSOCUG00000004970) #13	ENSOCUG00000030155	ENSOCUG00000038705 #30	ENSOCUG00000032314 #30	LBR (ENSOCUG00000000285) #29	ENAH (ENSOCUG00000002299) #28	SRP9 (ENSOCUG00000010791) #27	EPHX1 (ENSOCUG00000011934) #26	TMEM63A (ENSOCUG00000001907) #25	ENSOCUG00000021555 #22	PYCR2 (ENSOCUG00000001915) #23	ENSOCUG00000023218 #22	SDE2 (ENSOCUG00000001919) #21	ENSOCUG00000024644 ##20	ACBD3 (ENSOCUG00000014391) #19	MIXL1 (ENSOCUG00000000103) #18	ENSOCUG00000022544	LIN9 (ENSOCUG00000010028) #17	PARP1 (ENSOCUG00000017820) #16	CNIH3 (ENSOCUG00000007694) #31	WDR26 (ENSOCUG00000003294) #32	CNIH4 (ENSOCUG00000000520) #33	NVL (ENSOCUG00000005530) #34	ENSOCUG00000023942 #35	FBXO28 (ENSOCUG00000004012) #37
Pika	MODERN SPECIES	1847																ENSOPRG00000012162 #22
Laurasiatheria	ANCESTRAL SPECIES	28	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Artiodactyla	ANCESTRAL SPECIES	25	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Suina	ANCESTRAL SPECIES	55	ENSGT00390000004799.j	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a.b #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35
Pig	DUPLICATION
Pig	MODERN SPECIES	1	SCCPDH (ENSSSCG00000010866)	ENSSSCG00000060854	AHCTF1 (ENSSSCG00000010863)	CDC42BPA (ENSSSCG00000010862) #10	COQ8A (ENSSSCG00000010861) #11	PSEN2 (ENSSSCG00000010860) #12	ENSSSCG00000040100 #13	ENSSSCG00000046588 #13	STUM (ENSSSCG00000024288) #14	PARP1 (ENSSSCG00000023660) #16	LIN9 (ENSSSCG00000021310) #17	MIXL1 (ENSSSCG00000030675) #18	ACBD3 (ENSSSCG00000024180) #19	H3-3A (ENSSSCG00000023971) ##20	SDE2 (ENSSSCG00000010858) #21	LEFTY2 (ENSSSCG00000032299) #22	PYCR2 (ENSSSCG00000010855) #23	ENSSSCG00000038188 #22	TMEM63A (ENSSSCG00000010854) #25	EPHX1 (ENSSSCG00000010853) #26	SRP9 (ENSSSCG00000031664) #27	ENSSSCG00000017768	ENAH (ENSSSCG00000038646) #28	LBR (ENSSSCG00000032397) #29	DNAH14 (ENSSSCG00000031483) #30	CNIH3 (ENSSSCG00000034972) #31	WDR26 (ENSSSCG00000010849) #32	CNIH4 (ENSSSCG00000035034) #33	NVL (ENSSSCG00000026705) #34	DEGS1 (ENSSSCG00000024484) #35	ZNF596 (ENSSSCG00000025290)
Pig	MODERN SPECIES	1	AHCTF1 (ENSSSCG00000010863)	CDC42BPA (ENSSSCG00000010862) #10	COQ8A (ENSSSCG00000010861) #11	PSEN2 (ENSSSCG00000010860) #12	ENSSSCG00000040100 #13	ENSSSCG00000046588 #13	STUM (ENSSSCG00000024288) #14	PARP1 (ENSSSCG00000023660) #16	LIN9 (ENSSSCG00000021310) #17	MIXL1 (ENSSSCG00000030675) #18	ACBD3 (ENSSSCG00000024180) #19	H3-3A (ENSSSCG00000023971) ##20	SDE2 (ENSSSCG00000010858) #21	LEFTY2 (ENSSSCG00000032299) #22	PYCR2 (ENSSSCG00000010855) #23	ENSSSCG00000038188 #22	TMEM63A (ENSSSCG00000010854) #25	EPHX1 (ENSSSCG00000010853) #26	SRP9 (ENSSSCG00000031664) #27	ENSSSCG00000017768	ENAH (ENSSSCG00000038646) #28	LBR (ENSSSCG00000032397) #29	DNAH14 (ENSSSCG00000031483) #30	CNIH3 (ENSSSCG00000034972) #31	WDR26 (ENSSSCG00000010849) #32	CNIH4 (ENSSSCG00000035034) #33	NVL (ENSSSCG00000026705) #34	DEGS1 (ENSSSCG00000024484) #35	ZNF596 (ENSSSCG00000025290)	KMO (ENSSSCG00000025686)	FH (ENSSSCG00000028178)
Chacoan peccary	MODERN SPECIES	50														H3-3A (ENSCWAG00000007368) #20	SDE2 (ENSCWAG00000007407) #21	ENSCWAG00000007440 #22	PYCR2 (ENSCWAG00000007472) #23	TMEM63A (ENSCWAG00000007524) #25	EPHX1 (ENSCWAG00000007633) #26	SRP9 (ENSCWAG00000007657) #27	ENAH (ENSCWAG00000007692) #28	LBR (ENSCWAG00000007748) #29	ENSCWAG00000007806 #30	ENSCWAG00000007839 #30	ENSCWAG00000007925	ENSCWAG00000008140 ##31	WDR26 (ENSCWAG00000008179) #32	CNIH4 (ENSCWAG00000008250) #33	NVL (ENSCWAG00000008427) #34	DEGS1 (ENSCWAG00000008714) #35	F13B (ENSCWAG00000008757)
Artiodactyla_a	ANCESTRAL SPECIES	26	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Artiodactyla_b	ANCESTRAL SPECIES	26	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Cetacea	ANCESTRAL SPECIES	23	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376.tb.a #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Odontoceti	ANCESTRAL SPECIES	24	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376.tb.a #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Odontoceti_a	ANCESTRAL SPECIES	27	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376.tb.a #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056 #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013102.e.a.c.b	ENSGT00390000018505.b #27	ENSGT00940000157376.tb.a #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Monodontidae	ANCESTRAL SPECIES		ENSGT00390000018900	ENSGT00390000014577.a.b	ENSGT00530000063929.a.a.e.a	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056 #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000013102.e.a.c.b	ENSGT00390000018505.b #27	ENSGT00940000157376.tb.a #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	304	SCCPDH (ENSMMNG00015001432)	ENSMMNG00015001366	AHCTF1 (ENSMMNG00015001241)	ENSMMNG00015001190	CDC42BPA (ENSMMNG00015000504) #10	COQ8A (ENSMMNG00015000182) #11	PSEN2 (ENSMMNG00015000131) #12	ITPKB (ENSMMNG00015000098) #13	STUM (ENSMMNG00015008698) #14	PARP1 (ENSMMNG00015008660) #16	LIN9 (ENSMMNG00015008632) #17	MIXL1 (ENSMMNG00015008612) #18	ACBD3 (ENSMMNG00015008597) #19	ENSMMNG00015008586 ##20	SDE2 (ENSMMNG00015008574) #21	ENSMMNG00015008553 #22	PYCR2 (ENSMMNG00015008531) #23	ENSMMNG00015008515 #22	TMEM63A (ENSMMNG00015008488) #25	EPHX1 (ENSMMNG00015008464) #26	SRP9 (ENSMMNG00015008443) #27	ENSMMNG00015008420 #28	LBR (ENSMMNG00015008386) #29	CNIH3 (ENSMMNG00015008371) #31	WDR26 (ENSMMNG00015008361) #32	CNIH4 (ENSMMNG00015008342) #33	NVL (ENSMMNG00015008286) #34	DEGS1 (ENSMMNG00015008254) #35	ENSMMNG00015008235 #37	TP53BP2 (ENSMMNG00015008201)	CAPN2 (ENSMMNG00015008136)
Narwhal	MODERN SPECIES	304	AHCTF1 (ENSMMNG00015001241)	ENSMMNG00015001190	CDC42BPA (ENSMMNG00015000504) #10	COQ8A (ENSMMNG00015000182) #11	PSEN2 (ENSMMNG00015000131) #12	ITPKB (ENSMMNG00015000098) #13	STUM (ENSMMNG00015008698) #14	PARP1 (ENSMMNG00015008660) #16	LIN9 (ENSMMNG00015008632) #17	MIXL1 (ENSMMNG00015008612) #18	ACBD3 (ENSMMNG00015008597) #19	ENSMMNG00015008586 ##20	SDE2 (ENSMMNG00015008574) #21	ENSMMNG00015008553 #22	PYCR2 (ENSMMNG00015008531) #23	ENSMMNG00015008515 #22	TMEM63A (ENSMMNG00015008488) #25	EPHX1 (ENSMMNG00015008464) #26	SRP9 (ENSMMNG00015008443) #27	ENSMMNG00015008420 #28	LBR (ENSMMNG00015008386) #29	CNIH3 (ENSMMNG00015008371) #31	WDR26 (ENSMMNG00015008361) #32	CNIH4 (ENSMMNG00015008342) #33	NVL (ENSMMNG00015008286) #34	DEGS1 (ENSMMNG00015008254) #35	ENSMMNG00015008235 #37	TP53BP2 (ENSMMNG00015008201)	CAPN2 (ENSMMNG00015008136)	ENSMMNG00015008104	ENSMMNG00015008084
Beluga whale	MODERN SPECIES	21	AHCTF1 (ENSDLEG00000011885)	ENSDLEG00000011853	ENSDLEG00000011842	CDC42BPA (ENSDLEG00000003384) #10	COQ8A (ENSDLEG00000001874) #11	PSEN2 (ENSDLEG00000001858) #12	ITPKB (ENSDLEG00000001845) #13	STUM (ENSDLEG00000001836) #14	PARP1 (ENSDLEG00000001796) #16	LIN9 (ENSDLEG00000001768) #17	MIXL1 (ENSDLEG00000001757) #18	ACBD3 (ENSDLEG00000001749) #19	H3-3A (ENSDLEG00000001740) #20	SDE2 (ENSDLEG00000001732) #21	PYCR2 (ENSDLEG00000001719) #23	ENSDLEG00000001704 #22	TMEM63A (ENSDLEG00000001668) #25	EPHX1 (ENSDLEG00000001643) #26	ENSDLEG00000001631	SRP9 (ENSDLEG00000001626) #27	ENSDLEG00000000835 #28	LBR (ENSDLEG00000000619) #29	ENSDLEG00000000602	CNIH3 (ENSDLEG00000000564) #31	WDR26 (ENSDLEG00000000539) #32	CNIH4 (ENSDLEG00000000514) #33	NVL (ENSDLEG00000000461) #34	DEGS1 (ENSDLEG00000000439) #35	FBXO28 (ENSDLEG00000000426) #37	TP53BP2 (ENSDLEG00000000370)	CAPN2 (ENSDLEG00000000249)
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES		SCCPDH (ENSPSNG00000002932)	ENSPSNG00000002969	AHCTF1 (ENSPSNG00000003012)	CDC42BPA (ENSPSNG00000003179) #10	ENSPSNG00000003290	COQ8A (ENSPSNG00000003309) #11	PSEN2 (ENSPSNG00000003404) #12	ITPKB (ENSPSNG00000003506) #13	STUM (ENSPSNG00000003602) #14	PARP1 (ENSPSNG00000003624) #16	LIN9 (ENSPSNG00000003691) #17	MIXL1 (ENSPSNG00000003754) #18	ACBD3 (ENSPSNG00000003774) #19	H3-3A (ENSPSNG00000003793) #20	SDE2 (ENSPSNG00000003818) #21	ENSPSNG00000003838 #22	PYCR2 (ENSPSNG00000003860) #23	ENSPSNG00000003871 #22	TMEM63A (ENSPSNG00000000052) #25	EPHX1 (ENSPSNG00000000088) #26	ENSPSNG00000000117	ENSPSNG00000000145 #27	ENSPSNG00000000246 #28	LBR (ENSPSNG00000000326) #29	CNIH3 (ENSPSNG00000000369) #31	WDR26 (ENSPSNG00000000396) #32	CNIH4 (ENSPSNG00000000427) #33	NVL (ENSPSNG00000000479) #34	DEGS1 (ENSPSNG00000000518) #35	FBXO28 (ENSPSNG00000000541) #37	TP53BP2 (ENSPSNG00000000569)
Vaquita	MODERN SPECIES		AHCTF1 (ENSPSNG00000003012)	CDC42BPA (ENSPSNG00000003179) #10	ENSPSNG00000003290	COQ8A (ENSPSNG00000003309) #11	PSEN2 (ENSPSNG00000003404) #12	ITPKB (ENSPSNG00000003506) #13	STUM (ENSPSNG00000003602) #14	PARP1 (ENSPSNG00000003624) #16	LIN9 (ENSPSNG00000003691) #17	MIXL1 (ENSPSNG00000003754) #18	ACBD3 (ENSPSNG00000003774) #19	H3-3A (ENSPSNG00000003793) #20	SDE2 (ENSPSNG00000003818) #21	ENSPSNG00000003838 #22	PYCR2 (ENSPSNG00000003860) #23	ENSPSNG00000003871 #22	TMEM63A (ENSPSNG00000000052) #25	EPHX1 (ENSPSNG00000000088) #26	ENSPSNG00000000117	ENSPSNG00000000145 #27	ENSPSNG00000000246 #28	LBR (ENSPSNG00000000326) #29	CNIH3 (ENSPSNG00000000369) #31	WDR26 (ENSPSNG00000000396) #32	CNIH4 (ENSPSNG00000000427) #33	NVL (ENSPSNG00000000479) #34	DEGS1 (ENSPSNG00000000518) #35	FBXO28 (ENSPSNG00000000541) #37	TP53BP2 (ENSPSNG00000000569)	CAPN2 (ENSPSNG00000000652)	ENSPSNG00000000722
Dolphin	DUPLICATION
Dolphin	MODERN SPECIES	6575																ENSTTRG00000014474 #22
Dolphin	MODERN SPECIES	789														ENSTTRG00000012389	SDE2 (ENSTTRG00000012379) #21	ENSTTRG00000012370 #22	PYCR2 (ENSTTRG00000012363) #23
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	15	ENSPCTG00005002183	ENSPCTG00005002174	ENSPCTG00005002163	SCCPDH (ENSPCTG00005002144)	AHCTF1 (ENSPCTG00005001979)	CDC42BPA (ENSPCTG00005001336) #10	PSEN2 (ENSPCTG00005001191) #12	ITPKB (ENSPCTG00005001181) #13	STUM (ENSPCTG00005001169) #14	PARP1 (ENSPCTG00005001077) #16	LIN9 (ENSPCTG00005000990) #17	MIXL1 (ENSPCTG00005000953) #18	ACBD3 (ENSPCTG00005000938) #19	ENSPCTG00005000927 ##20	SDE2 (ENSPCTG00005000908) #21	ENSPCTG00005000889 #22	PYCR2 (ENSPCTG00005000862) #23	ENSPCTG00005000846 #22	TMEM63A (ENSPCTG00005000810) #25	EPHX1 (ENSPCTG00005000792) #26	SRP9 (ENSPCTG00005000768) #27	ENAH (ENSPCTG00005000731) #28	LBR (ENSPCTG00005000679) #29	CNIH3 (ENSPCTG00005000645) #31	WDR26 (ENSPCTG00005000611) #32	CNIH4 (ENSPCTG00005000590) #33	ENSPCTG00005000568	NVL (ENSPCTG00005000438) #34	DEGS1 (ENSPCTG00005000386) #35	FBXO28 (ENSPCTG00005000364) #37	TP53BP2 (ENSPCTG00005000322)
Sperm whale	MODERN SPECIES	15	ENSPCTG00005002163	SCCPDH (ENSPCTG00005002144)	AHCTF1 (ENSPCTG00005001979)	CDC42BPA (ENSPCTG00005001336) #10	PSEN2 (ENSPCTG00005001191) #12	ITPKB (ENSPCTG00005001181) #13	STUM (ENSPCTG00005001169) #14	PARP1 (ENSPCTG00005001077) #16	LIN9 (ENSPCTG00005000990) #17	MIXL1 (ENSPCTG00005000953) #18	ACBD3 (ENSPCTG00005000938) #19	ENSPCTG00005000927 ##20	SDE2 (ENSPCTG00005000908) #21	ENSPCTG00005000889 #22	PYCR2 (ENSPCTG00005000862) #23	ENSPCTG00005000846 #22	TMEM63A (ENSPCTG00005000810) #25	EPHX1 (ENSPCTG00005000792) #26	SRP9 (ENSPCTG00005000768) #27	ENAH (ENSPCTG00005000731) #28	LBR (ENSPCTG00005000679) #29	CNIH3 (ENSPCTG00005000645) #31	WDR26 (ENSPCTG00005000611) #32	CNIH4 (ENSPCTG00005000590) #33	ENSPCTG00005000568	NVL (ENSPCTG00005000438) #34	DEGS1 (ENSPCTG00005000386) #35	FBXO28 (ENSPCTG00005000364) #37	TP53BP2 (ENSPCTG00005000322)	CAPN2 (ENSPCTG00005000250)	ENSPCTG00005000213
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES		SCCPDH (ENSBMSG00010000887)	ENSBMSG00010000922	AHCTF1 (ENSBMSG00010000995)	ENSBMSG00010001133	CDC42BPA (ENSBMSG00010001349) #10	COQ8A (ENSBMSG00010002111) #11	PSEN2 (ENSBMSG00010002147) #12	ITPKB (ENSBMSG00010002191) #13	STUM (ENSBMSG00010002214) #14	PARP1 (ENSBMSG00010002247) #16	LIN9 (ENSBMSG00010002409) #17	MIXL1 (ENSBMSG00010002500) #18	ACBD3 (ENSBMSG00010002517) #19	ENSBMSG00010002563 #20	SDE2 (ENSBMSG00010002582) #21	ENSBMSG00010002616 #22	PYCR2 (ENSBMSG00010002659) #23	ENSBMSG00010002682 #22	TMEM63A (ENSBMSG00010002709) #25	EPHX1 (ENSBMSG00010002828) #26	ENSBMSG00010002850	ENSBMSG00010002862 #27	ENSBMSG00010002887 #28	LBR (ENSBMSG00010002944) #29	ENSBMSG00010002963 #30	ENSBMSG00010002972	ENSBMSG00010002975	CNIH3 (ENSBMSG00010003002) #31	WDR26 (ENSBMSG00010003042) #32	CNIH4 (ENSBMSG00010003094) #33	NVL (ENSBMSG00010003127) #34
Blue whale	MODERN SPECIES		AHCTF1 (ENSBMSG00010000995)	ENSBMSG00010001133	CDC42BPA (ENSBMSG00010001349) #10	COQ8A (ENSBMSG00010002111) #11	PSEN2 (ENSBMSG00010002147) #12	ITPKB (ENSBMSG00010002191) #13	STUM (ENSBMSG00010002214) #14	PARP1 (ENSBMSG00010002247) #16	LIN9 (ENSBMSG00010002409) #17	MIXL1 (ENSBMSG00010002500) #18	ACBD3 (ENSBMSG00010002517) #19	ENSBMSG00010002563 #20	SDE2 (ENSBMSG00010002582) #21	ENSBMSG00010002616 #22	PYCR2 (ENSBMSG00010002659) #23	ENSBMSG00010002682 #22	TMEM63A (ENSBMSG00010002709) #25	EPHX1 (ENSBMSG00010002828) #26	ENSBMSG00010002850	ENSBMSG00010002862 #27	ENSBMSG00010002887 #28	LBR (ENSBMSG00010002944) #29	ENSBMSG00010002963 #30	ENSBMSG00010002972	ENSBMSG00010002975	CNIH3 (ENSBMSG00010003002) #31	WDR26 (ENSBMSG00010003042) #32	CNIH4 (ENSBMSG00010003094) #33	NVL (ENSBMSG00010003127) #34	DEGS1 (ENSBMSG00010003230) #35	ENSBMSG00010003239
Pecora	ANCESTRAL SPECIES	22	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Percora_a	ANCESTRAL SPECIES	15	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Bovidae	DUPLICATION
Bovidae	ANCESTRAL SPECIES	15	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Caprinae	ANCESTRAL SPECIES	12	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090	ENSGT00740000115684
Goat	MODERN SPECIES	7	CDC42BPA (ENSCHIG00000021878) #10	COQ8A (ENSCHIG00000012633) #11	PSEN2 (ENSCHIG00000025180) #12	ITPKB (ENSCHIG00000016348) #13	STUM (ENSCHIG00000026813) #14	PARP1 (ENSCHIG00000018072) #16	LIN9 (ENSCHIG00000003005) #17	MIXL1 (ENSCHIG00000017640) #18	ACBD3 (ENSCHIG00000010539) #19	ENSCHIG00000021907 ##20	ENSCHIG00000013022	SDE2 (ENSCHIG00000022358) #21	ENSCHIG00000016605	ENSCHIG00000010623 #22	PYCR2 (ENSCHIG00000022032) #23	ENSCHIG00000017375 #22	TMEM63A (ENSCHIG00000026549) #25	EPHX1 (ENSCHIG00000017919) #26	SRP9 (ENSCHIG00000006407) #27	ENSCHIG00000004057	ENSCHIG00000000542	ENAH (ENSCHIG00000022407) #28	LBR (ENSCHIG00000013607) #29	DNAH14 (ENSCHIG00000021801) #30	CNIH3 (ENSCHIG00000015311) #31	ENSCHIG00000008380	WDR26 (ENSCHIG00000020527) #32	CNIH4 (ENSCHIG00000014392) #33	NVL (ENSCHIG00000001224) #34	DEGS1 (ENSCHIG00000021163) #35	ENSCHIG00000014707 #37
Rambouillet Sheep	MODERN SPECIES	3	ENSOARG00020003724	AHCTF1 (ENSOARG00020003268)	CDC42BPA (ENSOARG00020019926) #10	COQ8A (ENSOARG00020019681) #11	PSEN2 (ENSOARG00020019535) #12	ITPKB (ENSOARG00020019465) #13	STUM (ENSOARG00020019418) #14	PARP1 (ENSOARG00020019277) #16	LIN9 (ENSOARG00020018902) #17	MIXL1 (ENSOARG00020018842) #18	ACBD3 (ENSOARG00020018756) #19	H3F3A (ENSOARG00020018672) ##20	SDE2 (ENSOARG00020018625) #21	ENSOARG00020018575 #22	PYCR2 (ENSOARG00020018457) #23	ENSOARG00020018411 #22	TMEM63A (ENSOARG00020018308) #25	EPHX1 (ENSOARG00020018225) #26	SRP9 (ENSOARG00020018121) #27	ENSOARG00020018102	ENSOARG00020018058 #28	ENAH (ENSOARG00020017437) #28	LBR (ENSOARG00020017338) #29	ENSOARG00020017311	DNAH14 (ENSOARG00020016617) #30	CNIH3 (ENSOARG00020016440) #31	ENSOARG00020016393	WDR26 (ENSOARG00020016098) #32	CNIH4 (ENSOARG00020015970) #33	NVL (ENSOARG00020015361) #34	DEGS1 (ENSOARG00020015261) #35
Bovinae	ANCESTRAL SPECIES	12	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Bos	ANCESTRAL SPECIES	12	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Bos_b	ANCESTRAL SPECIES	9	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Cow	MODERN SPECIES	7	CDC42BPA (ENSBTAG00000022777) #10	COQ8A (ENSBTAG00000021880) #11	PSEN2 (ENSBTAG00000013197) #12	ITPKB (ENSBTAG00000053007) #13	ENSBTAG00000033252	STUM (ENSBTAG00000024560) #14	ENSBTAG00000047233	PARP1 (ENSBTAG00000000837) #16	LIN9 (ENSBTAG00000033267) #17	MIXL1 (ENSBTAG00000002139) #18	ACBD3 (ENSBTAG00000013128) #19	H3-3A (ENSBTAG00000024561) ##20	SDE2 (ENSBTAG00000012787) #21	ENSBTAG00000054752 #22	PYCR2 (ENSBTAG00000005835) #23	LEFTY2 (ENSBTAG00000055022) #22	TMEM63A (ENSBTAG00000002854) #25	EPHX1 (ENSBTAG00000000140) #26	SRP9 (ENSBTAG00000033322) #27	ENAH (ENSBTAG00000016185) #28	LBR (ENSBTAG00000008453) #29	DNAH14 (ENSBTAG00000008449) #30	CNIH3 (ENSBTAG00000053199) #31	WDR26 (ENSBTAG00000011785) #32	CNIH4 (ENSBTAG00000019471) #33	NVL (ENSBTAG00000006718) #34	DEGS1 (ENSBTAG00000012705) #35	FBXO28 (ENSBTAG00000019538) #37	TP53BP2 (ENSBTAG00000012781)	CAPN2 (ENSBTAG00000012778)	CAPN8 (ENSBTAG00000003600)
Hybrid Bos Indicus	MODERN SPECIES	7	COQ8A (ENSBIXG00005027082) #11	PSEN2 (ENSBIXG00005004681) #12	ITPKB (ENSBIXG00005027239) #13	ENSBIXG00005027257	ENSBIXG00005027292 #14	ENSBIXG00005007774	PARP1 (ENSBIXG00005027371) #16	LIN9 (ENSBIXG00005027424) #17	MIXL1 (ENSBIXG00005027457) #18	ENSBIXG00005027464	ACBD3 (ENSBIXG00005027541) #19	ENSBIXG00005027583 ##20	SDE2 (ENSBIXG00005027604) #21	ENSBIXG00005027638 #22	PYCR2 (ENSBIXG00005004750) #23	ENSBIXG00005004759 #22	TMEM63A (ENSBIXG00005027791) #25	EPHX1 (ENSBIXG00005027913) #26	SRP9 (ENSBIXG00005027974) #27	ENAH (ENSBIXG00005028092) #28	LBR (ENSBIXG00005028146) #29	DNAH14 (ENSBIXG00005004917) #30	CNIH3 (ENSBIXG00005028617) #31	WDR26 (ENSBIXG00005002380) #32	CNIH4 (ENSBIXG00005002358) #33	DEGS1 (ENSBIXG00005028737) #35	NVL (ENSBIXG00005028887) #34	FBXO28 (ENSBIXG00005028929) #37	TP53BP2 (ENSBIXG00005002081)	CAPN2 (ENSBIXG00005029036)	CAPN8 (ENSBIXG00005005137)
Bos_a	ANCESTRAL SPECIES	8	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Domestic yak	MODERN SPECIES	5	COQ8A (ENSBGRG00000005906) #11	PSEN2 (ENSBGRG00000005715) #12	ITPKB (ENSBGRG00000005683) #13	ENSBGRG00000005664 #14	PARP1 (ENSBGRG00000005223) #16	LIN9 (ENSBGRG00000005002) #17	MIXL1 (ENSBGRG00000004952) #18	ENSBGRG00000004942	ACBD3 (ENSBGRG00000004916) #19	ENSBGRG00000004896	H3-3A (ENSBGRG00000004866) #20	ENSBGRG00000004846	SDE2 (ENSBGRG00000004760) #21	ENSBGRG00000004709 #22	PYCR2 (ENSBGRG00000004674) #23	ENSBGRG00000004607 #22	TMEM63A (ENSBGRG00000004465) #25	EPHX1 (ENSBGRG00000004302) #26	SRP9 (ENSBGRG00000004171) #27	ENAH (ENSBGRG00000003960) #28	LBR (ENSBGRG00000003827) #29	ENSBGRG00000003785 #30	ENSBGRG00000003740 #30	ENSBGRG00000003672	CNIH3 (ENSBGRG00000011424) #31	WDR26 (ENSBGRG00000011013) #32	CNIH4 (ENSBGRG00000010701) #33	NVL (ENSBGRG00000010007) #34	DEGS1 (ENSBGRG00000009888) #35	FBXO28 (ENSBGRG00000009777) #37	TP53BP2 (ENSBGRG00000009682)
Wild yak	MODERN SPECIES	1552																ENSBMUG00000006287 #22	TMEM63A (ENSBMUG00000006305) #25	EPHX1 (ENSBMUG00000006359) #26	SRP9 (ENSBMUG00000006383) #27	ENAH (ENSBMUG00000006434) #28	LBR (ENSBMUG00000006450) #29	DNAH14 (ENSBMUG00000006523) #30	CNIH3 (ENSBMUG00000006554) #31	WDR26 (ENSBMUG00000006567) #32	CNIH4 (ENSBMUG00000006608) #33	NVL (ENSBMUG00000006678) #34	DEGS1 (ENSBMUG00000006787) #35	ENSBMUG00000006795 #37	TP53BP2 (ENSBMUG00000006820)	CAPN2 (ENSBMUG00000006868)	CAPN8 (ENSBMUG00000006928)
American bison	MODERN SPECIES	3231	AHCTF1 (ENSBBBG00000011807)	CDC42BPA (ENSBBBG00000012129) #10	COQ8A (ENSBBBG00000012196) #11	PSEN2 (ENSBBBG00000012223) #12	ITPKB (ENSBBBG00000012230) #13	STUM (ENSBBBG00000012244) #14	ENSBBBG00000012249	PARP1 (ENSBBBG00000012265) #16	LIN9 (ENSBBBG00000002326) #17	ENSBBBG00000001928	ACBD3 (ENSBBBG00000012298) #19	ENSBBBG00000012307 #20	SDE2 (ENSBBBG00000012313) #21	ENSBBBG00000012320 #22	PYCR2 (ENSBBBG00000012333) #23	ENSBBBG00000012339 #22	TMEM63A (ENSBBBG00000012352) #25	EPHX1 (ENSBBBG00000002344) #26	SRP9 (ENSBBBG00000002346) #27	ENAH (ENSBBBG00000002368) #28	LBR (ENSBBBG00000012450) #29	DNAH14 (ENSBBBG00000007448) #30	CNIH3 (ENSBBBG00000002423) #31	ENSBBBG00000012622	WDR26 (ENSBBBG00000012642) #32	CNIH4 (ENSBBBG00000012671) #33	NVL (ENSBBBG00000002471) #34	DEGS1 (ENSBBBG00000012791) #35	FBXO28 (ENSBBBG00000012804) #37	TP53BP2 (ENSBBBG00000001782)	CAPN2 (ENSBBBG00000007450)
Bovidae	ANCESTRAL SPECIES	15	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37
Caprinae	ANCESTRAL SPECIES	12	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Goat	MODERN SPECIES	7	AHCTF1 (ENSCHIG00000023392)	ENSCHIG00000010278	CDC42BPA (ENSCHIG00000021878) #10	COQ8A (ENSCHIG00000012633) #11	PSEN2 (ENSCHIG00000025180) #12	ITPKB (ENSCHIG00000016348) #13	STUM (ENSCHIG00000026813) #14	PARP1 (ENSCHIG00000018072) #16	LIN9 (ENSCHIG00000003005) #17	MIXL1 (ENSCHIG00000017640) #18	ACBD3 (ENSCHIG00000010539) #19	ENSCHIG00000021907 ##20	ENSCHIG00000013022	SDE2 (ENSCHIG00000022358) #21	ENSCHIG00000016605	ENSCHIG00000010623 #22	PYCR2 (ENSCHIG00000022032) #23	ENSCHIG00000017375 #22	TMEM63A (ENSCHIG00000026549) #25	EPHX1 (ENSCHIG00000017919) #26	SRP9 (ENSCHIG00000006407) #27	ENSCHIG00000004057	ENSCHIG00000000542	ENAH (ENSCHIG00000022407) #28	LBR (ENSCHIG00000013607) #29	DNAH14 (ENSCHIG00000021801) #30	CNIH3 (ENSCHIG00000015311) #31	ENSCHIG00000008380	WDR26 (ENSCHIG00000020527) #32	CNIH4 (ENSCHIG00000014392) #33	NVL (ENSCHIG00000001224) #34
Rambouillet Sheep	MODERN SPECIES	3	ENSOARG00020003854 ##20	SCCPDH (ENSOARG00020003810)	ENSOARG00020003724	AHCTF1 (ENSOARG00020003268)	CDC42BPA (ENSOARG00020019926) #10	COQ8A (ENSOARG00020019681) #11	PSEN2 (ENSOARG00020019535) #12	ITPKB (ENSOARG00020019465) #13	STUM (ENSOARG00020019418) #14	PARP1 (ENSOARG00020019277) #16	LIN9 (ENSOARG00020018902) #17	MIXL1 (ENSOARG00020018842) #18	ACBD3 (ENSOARG00020018756) #19	H3F3A (ENSOARG00020018672) ##20	SDE2 (ENSOARG00020018625) #21	ENSOARG00020018575 #22	PYCR2 (ENSOARG00020018457) #23	ENSOARG00020018411 #22	TMEM63A (ENSOARG00020018308) #25	EPHX1 (ENSOARG00020018225) #26	SRP9 (ENSOARG00020018121) #27	ENSOARG00020018102	ENSOARG00020018058 #28	ENAH (ENSOARG00020017437) #28	LBR (ENSOARG00020017338) #29	ENSOARG00020017311	DNAH14 (ENSOARG00020016617) #30	CNIH3 (ENSOARG00020016440) #31	ENSOARG00020016393	WDR26 (ENSOARG00020016098) #32	CNIH4 (ENSOARG00020015970) #33
Bovinae	ANCESTRAL SPECIES	12	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37
Bos	ANCESTRAL SPECIES	12	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37
Bos_a	ANCESTRAL SPECIES	8	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37
Domestic yak	MODERN SPECIES	5	AHCTF1 (ENSBGRG00000006477)	CDC42BPA (ENSBGRG00000006051) #10	COQ8A (ENSBGRG00000005906) #11	PSEN2 (ENSBGRG00000005715) #12	ITPKB (ENSBGRG00000005683) #13	ENSBGRG00000005664 #14	PARP1 (ENSBGRG00000005223) #16	LIN9 (ENSBGRG00000005002) #17	MIXL1 (ENSBGRG00000004952) #18	ENSBGRG00000004942	ACBD3 (ENSBGRG00000004916) #19	ENSBGRG00000004896	H3-3A (ENSBGRG00000004866) #20	ENSBGRG00000004846	SDE2 (ENSBGRG00000004760) #21	ENSBGRG00000004709 #22	PYCR2 (ENSBGRG00000004674) #23	ENSBGRG00000004607 #22	TMEM63A (ENSBGRG00000004465) #25	EPHX1 (ENSBGRG00000004302) #26	SRP9 (ENSBGRG00000004171) #27	ENAH (ENSBGRG00000003960) #28	LBR (ENSBGRG00000003827) #29	ENSBGRG00000003785 #30	ENSBGRG00000003740 #30	ENSBGRG00000003672	CNIH3 (ENSBGRG00000011424) #31	WDR26 (ENSBGRG00000011013) #32	CNIH4 (ENSBGRG00000010701) #33	NVL (ENSBGRG00000010007) #34	DEGS1 (ENSBGRG00000009888) #35
Wild yak	MODERN SPECIES	1893										ENSBMUG00000014506 #16	LIN9 (ENSBMUG00000015437) #17	MIXL1 (ENSBMUG00000015459) #18	ACBD3 (ENSBMUG00000015476) #19	ENSBMUG00000015502 ##20	SDE2 (ENSBMUG00000015514) #21	ENSBMUG00000015525 #22	PYCR2 (ENSBMUG00000015566) #23
Bos_b	ANCESTRAL SPECIES	9	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT01100000263474.a.b.b.e.a.b.a	ENSGT00940000156058.l #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT00530000063402.b #21	ENSGT00390000010056.ub #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.tb #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Cow	MODERN SPECIES	7	ENSBTAG00000049714	AHCTF1 (ENSBTAG00000013949)	CDC42BPA (ENSBTAG00000022777) #10	COQ8A (ENSBTAG00000021880) #11	PSEN2 (ENSBTAG00000013197) #12	ITPKB (ENSBTAG00000053007) #13	ENSBTAG00000033252	STUM (ENSBTAG00000024560) #14	ENSBTAG00000047233	PARP1 (ENSBTAG00000000837) #16	LIN9 (ENSBTAG00000033267) #17	MIXL1 (ENSBTAG00000002139) #18	ACBD3 (ENSBTAG00000013128) #19	H3-3A (ENSBTAG00000024561) ##20	SDE2 (ENSBTAG00000012787) #21	ENSBTAG00000054752 #22	PYCR2 (ENSBTAG00000005835) #23	LEFTY2 (ENSBTAG00000055022) #22	TMEM63A (ENSBTAG00000002854) #25	EPHX1 (ENSBTAG00000000140) #26	SRP9 (ENSBTAG00000033322) #27	ENAH (ENSBTAG00000016185) #28	LBR (ENSBTAG00000008453) #29	DNAH14 (ENSBTAG00000008449) #30	CNIH3 (ENSBTAG00000053199) #31	WDR26 (ENSBTAG00000011785) #32	CNIH4 (ENSBTAG00000019471) #33	NVL (ENSBTAG00000006718) #34	DEGS1 (ENSBTAG00000012705) #35	FBXO28 (ENSBTAG00000019538) #37	TP53BP2 (ENSBTAG00000012781)
Hybrid Bos Indicus	MODERN SPECIES	7	AHCTF1 (ENSBIXG00005026527)	CDC42BPA (ENSBIXG00005026924) #10	COQ8A (ENSBIXG00005027082) #11	PSEN2 (ENSBIXG00005004681) #12	ITPKB (ENSBIXG00005027239) #13	ENSBIXG00005027257	ENSBIXG00005027292 #14	ENSBIXG00005007774	PARP1 (ENSBIXG00005027371) #16	LIN9 (ENSBIXG00005027424) #17	MIXL1 (ENSBIXG00005027457) #18	ENSBIXG00005027464	ACBD3 (ENSBIXG00005027541) #19	ENSBIXG00005027583 ##20	SDE2 (ENSBIXG00005027604) #21	ENSBIXG00005027638 #22	PYCR2 (ENSBIXG00005004750) #23	ENSBIXG00005004759 #22	TMEM63A (ENSBIXG00005027791) #25	EPHX1 (ENSBIXG00005027913) #26	SRP9 (ENSBIXG00005027974) #27	ENAH (ENSBIXG00005028092) #28	LBR (ENSBIXG00005028146) #29	DNAH14 (ENSBIXG00005004917) #30	CNIH3 (ENSBIXG00005028617) #31	WDR26 (ENSBIXG00005002380) #32	CNIH4 (ENSBIXG00005002358) #33	DEGS1 (ENSBIXG00005028737) #35	NVL (ENSBIXG00005028887) #34	FBXO28 (ENSBIXG00005028929) #37	TP53BP2 (ENSBIXG00005002081)
American bison	MODERN SPECIES	3231	SCCPDH (ENSBBBG00000011719)	ENSBBBG00000002173	AHCTF1 (ENSBBBG00000011807)	CDC42BPA (ENSBBBG00000012129) #10	COQ8A (ENSBBBG00000012196) #11	PSEN2 (ENSBBBG00000012223) #12	ITPKB (ENSBBBG00000012230) #13	STUM (ENSBBBG00000012244) #14	ENSBBBG00000012249	PARP1 (ENSBBBG00000012265) #16	LIN9 (ENSBBBG00000002326) #17	ENSBBBG00000001928	ACBD3 (ENSBBBG00000012298) #19	ENSBBBG00000012307 #20	SDE2 (ENSBBBG00000012313) #21	ENSBBBG00000012320 #22	PYCR2 (ENSBBBG00000012333) #23	ENSBBBG00000012339 #22	TMEM63A (ENSBBBG00000012352) #25	EPHX1 (ENSBBBG00000002344) #26	SRP9 (ENSBBBG00000002346) #27	ENAH (ENSBBBG00000002368) #28	LBR (ENSBBBG00000012450) #29	DNAH14 (ENSBBBG00000007448) #30	CNIH3 (ENSBBBG00000002423) #31	ENSBBBG00000012622	WDR26 (ENSBBBG00000012642) #32	CNIH4 (ENSBBBG00000012671) #33	NVL (ENSBBBG00000002471) #34	DEGS1 (ENSBBBG00000012791) #35	FBXO28 (ENSBBBG00000012804) #37
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	188				PARP1 (ENSMMSG00000019082) #16	LIN9 (ENSMMSG00000019171) #17	MIXL1 (ENSMMSG00000019256) #18	ENSMMSG00000019292	ENSMMSG00000019312	ENSMMSG00000019330	ACBD3 (ENSMMSG00000019345) #19	ENSMMSG00000019373 ##20	SDE2 (ENSMMSG00000019388) #21	ENSMMSG00000019422	ENSMMSG00000019436 #22	PYCR2 (ENSMMSG00000019466) #23	ENSMMSG00000019519 #22	TMEM63A (ENSMMSG00000019545) #25	EPHX1 (ENSMMSG00000019599) #26	SRP9 (ENSMMSG00000019636) #27	ENAH (ENSMMSG00000019676) #28	LBR (ENSMMSG00000019704) #29	DNAH14 (ENSMMSG00000019767) #30	CNIH3 (ENSMMSG00000020039) #31	WDR26 (ENSMMSG00000020076) #32	ENSMMSG00000020244 #33	NVL (ENSMMSG00000020360) #34	ENSMMSG00000020522	DEGS1 (ENSMMSG00000020549) #35	FBXO28 (ENSMMSG00000020579) #37	ENSMMSG00000020616	TP53BP2 (ENSMMSG00000020632)
Siberian musk deer	MODERN SPECIES	188						PARP1 (ENSMMSG00000019082) #16	LIN9 (ENSMMSG00000019171) #17	MIXL1 (ENSMMSG00000019256) #18	ENSMMSG00000019292	ENSMMSG00000019312	ENSMMSG00000019330	ACBD3 (ENSMMSG00000019345) #19	ENSMMSG00000019373 ##20	SDE2 (ENSMMSG00000019388) #21	ENSMMSG00000019422	ENSMMSG00000019436 #22	PYCR2 (ENSMMSG00000019466) #23	ENSMMSG00000019519 #22	TMEM63A (ENSMMSG00000019545) #25	EPHX1 (ENSMMSG00000019599) #26	SRP9 (ENSMMSG00000019636) #27	ENAH (ENSMMSG00000019676) #28	LBR (ENSMMSG00000019704) #29	DNAH14 (ENSMMSG00000019767) #30	CNIH3 (ENSMMSG00000020039) #31	WDR26 (ENSMMSG00000020076) #32	ENSMMSG00000020244 #33	NVL (ENSMMSG00000020360) #34	ENSMMSG00000020522	DEGS1 (ENSMMSG00000020549) #35	FBXO28 (ENSMMSG00000020579) #37
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	5	AHCTF1 (ENSCHYG00000011282)	ENSCHYG00000011242	CDC42BPA (ENSCHYG00000010016) #10	COQ8A (ENSCHYG00000009793) #11	PSEN2 (ENSCHYG00000009644) #12	ITPKB (ENSCHYG00000009603) #13	ENSCHYG00000009567 #14	PARP1 (ENSCHYG00000009348) #16	LIN9 (ENSCHYG00000009023) #17	MIXL1 (ENSCHYG00000008961) #18	ACBD3 (ENSCHYG00000008896) #19	ENSCHYG00000008774 #20	SDE2 (ENSCHYG00000008711) #21	ENSCHYG00000008669 #22	PYCR2 (ENSCHYG00000008616) #23	ENSCHYG00000008576 #22	TMEM63A (ENSCHYG00000008498) #25	EPHX1 (ENSCHYG00000008370) #26	ENAH (ENSCHYG00000008178) #28	LBR (ENSCHYG00000008100) #29	DNAH14 (ENSCHYG00000007743) #30	ENSCHYG00000007691	ENSCHYG00000007678	CNIH3 (ENSCHYG00000007606) #31	ENSCHYG00000007572	WDR26 (ENSCHYG00000007505) #32	CNIH4 (ENSCHYG00000007424) #33	ENSCHYG00000007273 #34	DEGS1 (ENSCHYG00000007227) #35	FBXO28 (ENSCHYG00000007189) #37	TP53BP2 (ENSCHYG00000006921)
Yarkand deer	MODERN SPECIES	5	ENSCHYG00000011947	ENSCHYG00000011764	AHCTF1 (ENSCHYG00000011282)	ENSCHYG00000011242	CDC42BPA (ENSCHYG00000010016) #10	COQ8A (ENSCHYG00000009793) #11	PSEN2 (ENSCHYG00000009644) #12	ITPKB (ENSCHYG00000009603) #13	ENSCHYG00000009567 #14	PARP1 (ENSCHYG00000009348) #16	LIN9 (ENSCHYG00000009023) #17	MIXL1 (ENSCHYG00000008961) #18	ACBD3 (ENSCHYG00000008896) #19	ENSCHYG00000008774 #20	SDE2 (ENSCHYG00000008711) #21	ENSCHYG00000008669 #22	PYCR2 (ENSCHYG00000008616) #23	ENSCHYG00000008576 #22	TMEM63A (ENSCHYG00000008498) #25	EPHX1 (ENSCHYG00000008370) #26	ENAH (ENSCHYG00000008178) #28	LBR (ENSCHYG00000008100) #29	DNAH14 (ENSCHYG00000007743) #30	ENSCHYG00000007691	ENSCHYG00000007678	CNIH3 (ENSCHYG00000007606) #31	ENSCHYG00000007572	WDR26 (ENSCHYG00000007505) #32	CNIH4 (ENSCHYG00000007424) #33	ENSCHYG00000007273 #34	DEGS1 (ENSCHYG00000007227) #35
Camelidae	ANCESTRAL SPECIES	42	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	15	SCCPDH (ENSCDRG00005009923)	ENSCDRG00005009657	AHCTF1 (ENSCDRG00005008653)	CDC42BPA (ENSCDRG00005004650) #10	COQ8A (ENSCDRG00005004392) #11	PSEN2 (ENSCDRG00005004293) #12	ITPKB (ENSCDRG00005004264) #13	STUM (ENSCDRG00005004232) #14	PARP1 (ENSCDRG00005004094) #16	LIN9 (ENSCDRG00005003856) #17	MIXL1 (ENSCDRG00005003819) #18	ACBD3 (ENSCDRG00005003797) #19	ENSCDRG00005003780	ENSCDRG00005003751 #20	SDE2 (ENSCDRG00005003707) #21	ENSCDRG00005003588 #22	PYCR2 (ENSCDRG00005020074) #23	ENSCDRG00005020045 #22	TMEM63A (ENSCDRG00005020005) #25	EPHX1 (ENSCDRG00005019981) #26	SRP9 (ENSCDRG00005019952) #27	ENSCDRG00005019933	ENAH (ENSCDRG00005019805) #28	LBR (ENSCDRG00005019758) #29	DNAH14 (ENSCDRG00005019610) #30	CNIH3 (ENSCDRG00005019575) #31	WDR26 (ENSCDRG00005019563) #32	CNIH4 (ENSCDRG00005019545) #33	NVL (ENSCDRG00005019414) #34	DEGS1 (ENSCDRG00005019393) #35	FBXO28 (ENSCDRG00005019370) #37
Arabian camel	MODERN SPECIES	15	AHCTF1 (ENSCDRG00005008653)	CDC42BPA (ENSCDRG00005004650) #10	COQ8A (ENSCDRG00005004392) #11	PSEN2 (ENSCDRG00005004293) #12	ITPKB (ENSCDRG00005004264) #13	STUM (ENSCDRG00005004232) #14	PARP1 (ENSCDRG00005004094) #16	LIN9 (ENSCDRG00005003856) #17	MIXL1 (ENSCDRG00005003819) #18	ACBD3 (ENSCDRG00005003797) #19	ENSCDRG00005003780	ENSCDRG00005003751 #20	SDE2 (ENSCDRG00005003707) #21	ENSCDRG00005003588 #22	PYCR2 (ENSCDRG00005020074) #23	ENSCDRG00005020045 #22	TMEM63A (ENSCDRG00005020005) #25	EPHX1 (ENSCDRG00005019981) #26	SRP9 (ENSCDRG00005019952) #27	ENSCDRG00005019933	ENAH (ENSCDRG00005019805) #28	LBR (ENSCDRG00005019758) #29	DNAH14 (ENSCDRG00005019610) #30	CNIH3 (ENSCDRG00005019575) #31	WDR26 (ENSCDRG00005019563) #32	CNIH4 (ENSCDRG00005019545) #33	NVL (ENSCDRG00005019414) #34	DEGS1 (ENSCDRG00005019393) #35	FBXO28 (ENSCDRG00005019370) #37	TP53BP2 (ENSCDRG00005019295)	CAPN2 (ENSCDRG00005019228)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Carnivora	ANCESTRAL SPECIES	14	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Caniformia	ANCESTRAL SPECIES	10	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00940000161841.n	ENSGT00390000002970 #37
Ursidae	ANCESTRAL SPECIES	4	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00940000161841.n	ENSGT00390000002970 #37
Ursus	ANCESTRAL SPECIES	90	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505.u #30	ENSGT00390000000412	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00940000161841.n	ENSGT00390000002970 #37
American black bear	MODERN SPECIES	870																ENSUAMG00000028421 #22	PYCR2 (ENSUAMG00000028420) #23	TMEM63A (ENSUAMG00000028419) #25	EPHX1 (ENSUAMG00000028418) #26
Giant Panda	MODERN SPECIES	18	CNST (ENSAMEG00000006589)	SCCPDH (ENSAMEG00000006562)	ENSAMEG00000029183	ENSAMEG00000006501	ENSAMEG00000008890 #10	COQ8A (ENSAMEG00000009019) #11	PSEN2 (ENSAMEG00000009070) #12	ITPKB (ENSAMEG00000009097) #13	STUM (ENSAMEG00000009117) #14	PARP1 (ENSAMEG00000014451) #16	LIN9 (ENSAMEG00000014535) #17	MIXL1 (ENSAMEG00000014565) #18	ACBD3 (ENSAMEG00000014568) #19	ENSAMEG00000029116 ##20	SDE2 (ENSAMEG00000014591) #21	ENSAMEG00000014607 #22	PYCR2 (ENSAMEG00000014626) #23	TMEM63A (ENSAMEG00000014638) #25	EPHX1 (ENSAMEG00000027522) #26	SRP9 (ENSAMEG00000014710) #27	ENAH (ENSAMEG00000015746) #28	LBR (ENSAMEG00000015778) #29	DNAH14 (ENSAMEG00000015805) #30	CNIH3 (ENSAMEG00000024773) #31	WDR26 (ENSAMEG00000015955) #32	CNIH4 (ENSAMEG00000015944) #33	NVL (ENSAMEG00000015910) #34	DEGS1 (ENSAMEG00000015906) #35	ENSAMEG00000029292	FBXO28 (ENSAMEG00000015894) #37	TP53BP2 (ENSAMEG00000015840)
Mustelinae	ANCESTRAL SPECIES	51	ENSGT00940000159554	ENSGT01030000234618.B	ENSGT00390000013877	ENSGT00940000155161	ENSGT00390000008829	ENSGT00520000059630	ENSGT00940000162785	ENSGT00550000074794	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.b.a.b.ib ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00940000161841.n	ENSGT00390000002970 #37	ENSGT00940000153463.b
American mink	DUPLICATION
American mink	MODERN SPECIES	73	ZBTB37 (ENSNVIG00000014530)	DARS2 (ENSNVIG00000014589)	CENPL (ENSNVIG00000014636)	KLHL20 (ENSNVIG00000014655)	ANKRD45 (ENSNVIG00000014684)	TEX50 (ENSNVIG00000014691)	SLC9C2 (ENSNVIG00000014705)	PRDX6 (ENSNVIG00000014746)	ITPKB (ENSNVIG00000014754) #13	STUM (ENSNVIG00000014784) #14	PARP1 (ENSNVIG00000014805) #16	LIN9 (ENSNVIG00000014864) #17	ACBD3 (ENSNVIG00000014901) #19	ENSNVIG00000014926 ##20	SDE2 (ENSNVIG00000014947) #21	ENSNVIG00000014955 #22	PYCR2 (ENSNVIG00000014966) #23	ENSNVIG00000015022 #22	TMEM63A (ENSNVIG00000015042) #25	EPHX1 (ENSNVIG00000015107) #26	SRP9 (ENSNVIG00000015125) #27	ENAH (ENSNVIG00000015156) #28	LBR (ENSNVIG00000015260) #29	DNAH14 (ENSNVIG00000015327) #30	CNIH3 (ENSNVIG00000015610) #31	WDR26 (ENSNVIG00000015630) #32	CNIH4 (ENSNVIG00000015648) #33	NVL (ENSNVIG00000015670) #34	DEGS1 (ENSNVIG00000015892) #35	ENSNVIG00000015907	ENSNVIG00000015922 #37
American mink	MODERN SPECIES	73	CENPL (ENSNVIG00000014636)	KLHL20 (ENSNVIG00000014655)	ANKRD45 (ENSNVIG00000014684)	TEX50 (ENSNVIG00000014691)	SLC9C2 (ENSNVIG00000014705)	PRDX6 (ENSNVIG00000014746)	ITPKB (ENSNVIG00000014754) #13	STUM (ENSNVIG00000014784) #14	PARP1 (ENSNVIG00000014805) #16	LIN9 (ENSNVIG00000014864) #17	ACBD3 (ENSNVIG00000014901) #19	ENSNVIG00000014926 ##20	SDE2 (ENSNVIG00000014947) #21	ENSNVIG00000014955 #22	PYCR2 (ENSNVIG00000014966) #23	ENSNVIG00000015022 #22	TMEM63A (ENSNVIG00000015042) #25	EPHX1 (ENSNVIG00000015107) #26	SRP9 (ENSNVIG00000015125) #27	ENAH (ENSNVIG00000015156) #28	LBR (ENSNVIG00000015260) #29	DNAH14 (ENSNVIG00000015327) #30	CNIH3 (ENSNVIG00000015610) #31	WDR26 (ENSNVIG00000015630) #32	CNIH4 (ENSNVIG00000015648) #33	NVL (ENSNVIG00000015670) #34	DEGS1 (ENSNVIG00000015892) #35	ENSNVIG00000015907	ENSNVIG00000015922 #37	TP53BP2 (ENSNVIG00000015939)	CAPN2 (ENSNVIG00000015965)
Ferret	MODERN SPECIES	246	ZBTB37 (ENSMPUG00000004728)	DARS2 (ENSMPUG00000004716)	CENPL (ENSMPUG00000004707)	KLHL20 (ENSMPUG00000004695)	ANKRD45 (ENSMPUG00000004688)	SLC9C2 (ENSMPUG00000004656)	PRDX6 (ENSMPUG00000004648)	ENSMPUG00000018474	ITPKB (ENSMPUG00000004596) #13	PARP1 (ENSMPUG00000004585) #16	LIN9 (ENSMPUG00000004573) #17	ACBD3 (ENSMPUG00000004563) #19	ENSMPUG00000004555 #20	SDE2 (ENSMPUG00000004543) #21	ENSMPUG00000004540	ENSMPUG00000004487 #22	PYCR2 (ENSMPUG00000004479) #23	TMEM63A (ENSMPUG00000004462) #25	ENSMPUG00000004459	EPHX1 (ENSMPUG00000004409) #26	ENAH (ENSMPUG00000004394) #28	LBR (ENSMPUG00000004384) #29	ENSMPUG00000004174 #30	CNIH3 (ENSMPUG00000004163) #31	WDR26 (ENSMPUG00000004049) #32	NVL (ENSMPUG00000004031) #34	DEGS1 (ENSMPUG00000004010) #35	FBXO28 (ENSMPUG00000004002) #37	ENSMPUG00000003995	TP53BP2 (ENSMPUG00000003981)	CAPN2 (ENSMPUG00000003968)
Canidae	ANCESTRAL SPECIES	1	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000182891.a.a.b.a.a.a.b.a.a.x.a	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00390000004799	ENSGT00950000183029.B.c.b.b.b.i.b	ENSGT00940000178689	ENSGT00390000018900	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT01030000238203	ENSGT00390000000411.g.b	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00390000000412	ENSGT00950000183123.g.a.a.b	ENSGT00950000182891.a.a.b.a.a.a.b.a.a.x.a	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35
Dog	DUPLICATION
Dog	MODERN SPECIES	35	ENSCAFG00845006225	AHCTF1 (ENSCAFG00845006427)	CDC42BPA (ENSCAFG00845007016) #10	ENSCAFG00845007754	COQ8A (ENSCAFG00845007817) #11	PSEN2 (ENSCAFG00845008023) #12	ITPKB (ENSCAFG00845008212) #13	STUM (ENSCAFG00845008283) #14	PARP1 (ENSCAFG00845008325) #16	LIN9 (ENSCAFG00845008477) #17	MIXL1 (ENSCAFG00845008836) #18	ENSCAFG00845008860	ACBD3 (ENSCAFG00845008884) #19	ENSCAFG00845008917 ##20	SDE2 (ENSCAFG00845008939) #21	ENSCAFG00845008972 #22	ENSCAFG00845009009	PYCR2 (ENSCAFG00845009034) #23	ENSCAFG00845009114 #22	TMEM63A (ENSCAFG00845009155) #25	EPHX1 (ENSCAFG00845009397) #26	SRP9 (ENSCAFG00845009505) #27	ENAH (ENSCAFG00845009892) #28	LBR (ENSCAFG00845010980) #29	DNAH14 (ENSCAFG00845011498) #30	ENSCAFG00845012247	ENSCAFG00845012260	CNIH3 (ENSCAFG00845012278) #31	WDR26 (ENSCAFG00845012382) #32	CNIH4 (ENSCAFG00845012452) #33	NVL (ENSCAFG00845012656) #34
Dog	MODERN SPECIES	35	ENSCAFG00845007754	COQ8A (ENSCAFG00845007817) #11	PSEN2 (ENSCAFG00845008023) #12	ITPKB (ENSCAFG00845008212) #13	STUM (ENSCAFG00845008283) #14	PARP1 (ENSCAFG00845008325) #16	LIN9 (ENSCAFG00845008477) #17	MIXL1 (ENSCAFG00845008836) #18	ENSCAFG00845008860	ACBD3 (ENSCAFG00845008884) #19	ENSCAFG00845008917 ##20	SDE2 (ENSCAFG00845008939) #21	ENSCAFG00845008972 #22	ENSCAFG00845009009	PYCR2 (ENSCAFG00845009034) #23	ENSCAFG00845009114 #22	TMEM63A (ENSCAFG00845009155) #25	EPHX1 (ENSCAFG00845009397) #26	SRP9 (ENSCAFG00845009505) #27	ENAH (ENSCAFG00845009892) #28	LBR (ENSCAFG00845010980) #29	DNAH14 (ENSCAFG00845011498) #30	ENSCAFG00845012247	ENSCAFG00845012260	CNIH3 (ENSCAFG00845012278) #31	WDR26 (ENSCAFG00845012382) #32	CNIH4 (ENSCAFG00845012452) #33	NVL (ENSCAFG00845012656) #34	ENSCAFG00845012857	DEGS1 (ENSCAFG00845012915) #35	FBXO28 (ENSCAFG00845012940) #37
Dingo	MODERN SPECIES	271	AHCTF1 (ENSCAFG00020001201)	ENSCAFG00020001339 #10	ENSCAFG00020001351 #10	CDC42BPA (ENSCAFG00020001364) #10	COQ8A (ENSCAFG00020001368) #11	PSEN2 (ENSCAFG00020001399) #12	ITPKB (ENSCAFG00020001406) #13	STUM (ENSCAFG00020001421) #14	PARP1 (ENSCAFG00020001660) #16	LIN9 (ENSCAFG00020003192) #17	ENSCAFG00020003200	ENSCAFG00020003202	ACBD3 (ENSCAFG00020003210) #19	ENSCAFG00020003228 ##20	SDE2 (ENSCAFG00020003247) #21	ENSCAFG00020003248 #22	PYCR2 (ENSCAFG00020003264) #23	TMEM63A (ENSCAFG00020003274) #25	EPHX1 (ENSCAFG00020003279) #26	SRP9 (ENSCAFG00020003285) #27	ENAH (ENSCAFG00020003296) #28	LBR (ENSCAFG00020003321) #29	ENSCAFG00020003326 #30	ENSCAFG00020003333 #30	ENSCAFG00020003357	ENSCAFG00020003361	ENSCAFG00020003365	CNIH3 (ENSCAFG00020003397) #31	WDR26 (ENSCAFG00020003429) #32	CNIH4 (ENSCAFG00020003678) #33	NVL (ENSCAFG00020003680) #34
Felidae	ANCESTRAL SPECIES	11	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Panthera	ANCESTRAL SPECIES	19	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a.v #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Panthera_a	ANCESTRAL SPECIES	19	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a.v #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
leopard	DUPLICATION
leopard	MODERN SPECIES	4	TFB2M (ENSPPRG00000007350)	CNST (ENSPPRG00000008188)	SCCPDH (ENSPPRG00000008599)	ENSPPRG00000009605	CDC42BPA (ENSPPRG00000024128) #10	COQ8A (ENSPPRG00000022935) #11	PSEN2 (ENSPPRG00000002017) #12	ITPKB (ENSPPRG00000002311) #13	STUM (ENSPPRG00000002817) #14	PARP1 (ENSPPRG00000003528) #16	LIN9 (ENSPPRG00000003816) #17	MIXL1 (ENSPPRG00000004369) #18	ENSPPRG00000004470 #19	H3-3A (ENSPPRG00000004900) #20	SDE2 (ENSPPRG00000005139) #21	ENSPPRG00000006189 #22	PYCR2 (ENSPPRG00000008433) #23	ENSPPRG00000008898 #22	TMEM63A (ENSPPRG00000010133) #25	EPHX1 (ENSPPRG00000011566) #26	SRP9 (ENSPPRG00000011732) #27	ENAH (ENSPPRG00000015078) #28	LBR (ENSPPRG00000018166) #29	DNAH14 (ENSPPRG00000006163) #30
leopard	MODERN SPECIES	4	SCCPDH (ENSPPRG00000008599)	ENSPPRG00000009605	CDC42BPA (ENSPPRG00000024128) #10	COQ8A (ENSPPRG00000022935) #11	PSEN2 (ENSPPRG00000002017) #12	ITPKB (ENSPPRG00000002311) #13	STUM (ENSPPRG00000002817) #14	PARP1 (ENSPPRG00000003528) #16	LIN9 (ENSPPRG00000003816) #17	MIXL1 (ENSPPRG00000004369) #18	ENSPPRG00000004470 #19	H3-3A (ENSPPRG00000004900) #20	SDE2 (ENSPPRG00000005139) #21	ENSPPRG00000006189 #22	PYCR2 (ENSPPRG00000008433) #23	ENSPPRG00000008898 #22	TMEM63A (ENSPPRG00000010133) #25	EPHX1 (ENSPPRG00000011566) #26	SRP9 (ENSPPRG00000011732) #27	ENAH (ENSPPRG00000015078) #28	LBR (ENSPPRG00000018166) #29	DNAH14 (ENSPPRG00000006163) #30
lion	MODERN SPECIES	464																ENSPLOG00000019030 #22
Cat	MODERN SPECIES	248	TFB2M (ENSFCAG00000021951)	CNST (ENSFCAG00000028075)	SCCPDH (ENSFCAG00000010642)	ENSFCAG00000024485	AHCTF1 (ENSFCAG00000014392)	CDC42BPA (ENSFCAG00000008784) #10	COQ8A (ENSFCAG00000044578) #11	PSEN2 (ENSFCAG00000008781) #12	ITPKB (ENSFCAG00000025620) #13	STUM (ENSFCAG00000043992) #14	PARP1 (ENSFCAG00000005777) #16	LIN9 (ENSFCAG00000010528) #17	ACBD3 (ENSFCAG00000030208) #19	SDE2 (ENSFCAG00000015082) #21	PYCR2 (ENSFCAG00000012541) #23	ENSFCAG00000039160 #22	TMEM63A (ENSFCAG00000044147) #25	EPHX1 (ENSFCAG00000006965) #26	SRP9 (ENSFCAG00000010275) #27	ENAH (ENSFCAG00000028416) #28	DNAH14 (ENSFCAG00000023988) #30	CNIH3 (ENSFCAG00000014101) #31	WDR26 (ENSFCAG00000002464) #32	CNIH4 (ENSFCAG00000038772) #33	NVL (ENSFCAG00000009876) #34	DEGS1 (ENSFCAG00000000202) #35	FBXO28 (ENSFCAG00000022457) #37	TP53BP2 (ENSFCAG00000010673)	CAPN2 (ENSFCAG00000010671)	ENSFCAG00000010669	CCDC185 (ENSFCAG00000050667)
Laurasiatheria_c	ANCESTRAL SPECIES	25	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Chiroptera	ANCESTRAL SPECIES	30	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000178689	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Megabat	DUPLICATION
Megabat	MODERN SPECIES	1071														ENSPVAG00000004797 #20	SDE2 (ENSPVAG00000004796) #21	ENSPVAG00000004795 #22	PYCR2 (ENSPVAG00000004794) #23	ENSPVAG00000004790 #22	TMEM63A (ENSPVAG00000004786) #25	EPHX1 (ENSPVAG00000004784) #26
Megabat	MODERN SPECIES	1071												ENSPVAG00000004797 #20	SDE2 (ENSPVAG00000004796) #21	ENSPVAG00000004795 #22	PYCR2 (ENSPVAG00000004794) #23	ENSPVAG00000004790 #22	TMEM63A (ENSPVAG00000004786) #25	EPHX1 (ENSPVAG00000004784) #26
Microchiroptera	ANCESTRAL SPECIES	32	ENSGT00390000004799	ENSGT00940000178689	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.a.yb #20	ENSGT01100000263504.a.b.b.b.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	19	ENSRFEG00010015342	AHCTF1 (ENSRFEG00010015223)	ENSRFEG00010015186	CDC42BPA (ENSRFEG00010014755) #10	COQ8A (ENSRFEG00010014597) #11	PSEN2 (ENSRFEG00010014406) #12	ENSRFEG00010014341	ITPKB (ENSRFEG00010014319) #13	STUM (ENSRFEG00010014278) #14	PARP1 (ENSRFEG00010014181) #16	LIN9 (ENSRFEG00010013701) #17	MIXL1 (ENSRFEG00010013582) #18	ACBD3 (ENSRFEG00010013539) #19	ENSRFEG00010021810 ##20	SDE2 (ENSRFEG00010021807) #21	ENSRFEG00010021799 #22	PYCR2 (ENSRFEG00010021788) #23	ENSRFEG00010021782 #22	TMEM63A (ENSRFEG00010021763) #25	EPHX1 (ENSRFEG00010021750) #26	ENSRFEG00010021741 #27	ENAH (ENSRFEG00010021710) #28	LBR (ENSRFEG00010021686) #29	DNAH14 (ENSRFEG00010021629) #30	CNIH3 (ENSRFEG00010021586) #31	WDR26 (ENSRFEG00010021568) #32	CNIH4 (ENSRFEG00010021549) #33	NVL (ENSRFEG00010021511) #34	DEGS1 (ENSRFEG00010021497) #35	FBXO28 (ENSRFEG00010021487) #37	TP53BP2 (ENSRFEG00010021449)
Greater horseshoe bat	MODERN SPECIES	19	ENSRFEG00010015186	CDC42BPA (ENSRFEG00010014755) #10	COQ8A (ENSRFEG00010014597) #11	PSEN2 (ENSRFEG00010014406) #12	ENSRFEG00010014341	ITPKB (ENSRFEG00010014319) #13	STUM (ENSRFEG00010014278) #14	PARP1 (ENSRFEG00010014181) #16	LIN9 (ENSRFEG00010013701) #17	MIXL1 (ENSRFEG00010013582) #18	ACBD3 (ENSRFEG00010013539) #19	ENSRFEG00010021810 ##20	SDE2 (ENSRFEG00010021807) #21	ENSRFEG00010021799 #22	PYCR2 (ENSRFEG00010021788) #23	ENSRFEG00010021782 #22	TMEM63A (ENSRFEG00010021763) #25	EPHX1 (ENSRFEG00010021750) #26	ENSRFEG00010021741 #27	ENAH (ENSRFEG00010021710) #28	LBR (ENSRFEG00010021686) #29	DNAH14 (ENSRFEG00010021629) #30	CNIH3 (ENSRFEG00010021586) #31	WDR26 (ENSRFEG00010021568) #32	CNIH4 (ENSRFEG00010021549) #33	NVL (ENSRFEG00010021511) #34	DEGS1 (ENSRFEG00010021497) #35	FBXO28 (ENSRFEG00010021487) #37	TP53BP2 (ENSRFEG00010021449)	CAPN2 (ENSRFEG00010021418)	CAPN8 (ENSRFEG00010021382)
Microbat	MODERN SPECIES	2094															SDE2 (ENSMLUG00000015272) #21	ENSMLUG00000005154 #22	PYCR2 (ENSMLUG00000000978) #23
Equus	DUPLICATION
Equus	ANCESTRAL SPECIES	41	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.mc #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.lc #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090
Donkey	MODERN SPECIES	23	ENSEASG00005031616	SCCPDH (ENSEASG00005005739)	ENSEASG00005036075	ENSEASG00005005859	ENSEASG00005006206 #10	COQ8A (ENSEASG00005013257) #11	PSEN2 (ENSEASG00005013260) #12	ITPKB (ENSEASG00005013263) #13	STUM (ENSEASG00005033549) #14	PARP1 (ENSEASG00005013275) #16	LIN9 (ENSEASG00005013290) #17	MIXL1 (ENSEASG00005013350) #18	ACBD3 (ENSEASG00005013353) #19	ENSEASG00005013355 ##20	SDE2 (ENSEASG00005013356) #21	ENSEASG00005030091 #22	PYCR2 (ENSEASG00005013358) #23	ENSEASG00005025761 #22	TMEM63A (ENSEASG00005013377) #25	EPHX1 (ENSEASG00005013496) #26	ENSEASG00005013509 #27	ENAH (ENSEASG00005013528) #28	LBR (ENSEASG00005013556) #29	DNAH14 (ENSEASG00005033325) #30	CNIH3 (ENSEASG00005038744) #31	WDR26 (ENSEASG00005013590) #32	CNIH4 (ENSEASG00005013594) #33	NVL (ENSEASG00005013599) #34	DEGS1 (ENSEASG00005013608) #35	FBXO28 (ENSEASG00005013614) #37	TP53BP2 (ENSEASG00005013621)
Horse	MODERN SPECIES	23	ENSECAG00000038309	AHCTF1 (ENSECAG00000011125)	CDC42BPA (ENSECAG00000017881) #10	COQ8A (ENSECAG00000019955) #11	PSEN2 (ENSECAG00000008285) #12	ITPKB (ENSECAG00000014769) #13	STUM (ENSECAG00000037774) #14	PARP1 (ENSECAG00000019207) #16	LIN9 (ENSECAG00000014325) #17	MIXL1 (ENSECAG00000033929) #18	ACBD3 (ENSECAG00000000084) #19	H3-3A (ENSECAG00000006904) ##20	SDE2 (ENSECAG00000008052) #21	ENSECAG00000038401 #22	PYCR2 (ENSECAG00000010882) #23	ENSECAG00000039385 #22	TMEM63A (ENSECAG00000018566) #25	EPHX1 (ENSECAG00000019677) #26	SRP9 (ENSECAG00000054865) ##27	ENAH (ENSECAG00000022447) #28	LBR (ENSECAG00000011192) #29	DNAH14 (ENSECAG00000044830) #30	ENSECAG00000060177	CNIH3 (ENSECAG00000019237) #31	WDR26 (ENSECAG00000020139) #32	CNIH4 (ENSECAG00000010873) #33	NVL (ENSECAG00000014421) #34	DEGS1 (ENSECAG00000000186) #35	FBXO28 (ENSECAG00000002428) #37	TP53BP2 (ENSECAG00000005927)	CAPN2 (ENSECAG00000008742)
Equus	ANCESTRAL SPECIES	41	ENSGT00940000171704	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056.mc #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00390000010056.lc #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505.b #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Donkey	MODERN SPECIES	23	ENSEASG00005036075	ENSEASG00005005859	ENSEASG00005006206 #10	COQ8A (ENSEASG00005013257) #11	PSEN2 (ENSEASG00005013260) #12	ITPKB (ENSEASG00005013263) #13	STUM (ENSEASG00005033549) #14	PARP1 (ENSEASG00005013275) #16	LIN9 (ENSEASG00005013290) #17	MIXL1 (ENSEASG00005013350) #18	ACBD3 (ENSEASG00005013353) #19	ENSEASG00005013355 ##20	SDE2 (ENSEASG00005013356) #21	ENSEASG00005030091 #22	PYCR2 (ENSEASG00005013358) #23	ENSEASG00005025761 #22	TMEM63A (ENSEASG00005013377) #25	EPHX1 (ENSEASG00005013496) #26	ENSEASG00005013509 #27	ENAH (ENSEASG00005013528) #28	LBR (ENSEASG00005013556) #29	DNAH14 (ENSEASG00005033325) #30	CNIH3 (ENSEASG00005038744) #31	WDR26 (ENSEASG00005013590) #32	CNIH4 (ENSEASG00005013594) #33	NVL (ENSEASG00005013599) #34	DEGS1 (ENSEASG00005013608) #35	FBXO28 (ENSEASG00005013614) #37	TP53BP2 (ENSEASG00005013621)	CAPN2 (ENSEASG00005013647)	CAPN8 (ENSEASG00005013672)
Horse	MODERN SPECIES	23	CNST (ENSECAG00000019039)	SCCPDH (ENSECAG00000020866)	ENSECAG00000038309	AHCTF1 (ENSECAG00000011125)	CDC42BPA (ENSECAG00000017881) #10	COQ8A (ENSECAG00000019955) #11	PSEN2 (ENSECAG00000008285) #12	ITPKB (ENSECAG00000014769) #13	STUM (ENSECAG00000037774) #14	PARP1 (ENSECAG00000019207) #16	LIN9 (ENSECAG00000014325) #17	MIXL1 (ENSECAG00000033929) #18	ACBD3 (ENSECAG00000000084) #19	H3-3A (ENSECAG00000006904) ##20	SDE2 (ENSECAG00000008052) #21	ENSECAG00000038401 #22	PYCR2 (ENSECAG00000010882) #23	ENSECAG00000039385 #22	TMEM63A (ENSECAG00000018566) #25	EPHX1 (ENSECAG00000019677) #26	SRP9 (ENSECAG00000054865) ##27	ENAH (ENSECAG00000022447) #28	LBR (ENSECAG00000011192) #29	DNAH14 (ENSECAG00000044830) #30	ENSECAG00000060177	CNIH3 (ENSECAG00000019237) #31	WDR26 (ENSECAG00000020139) #32	CNIH4 (ENSECAG00000010873) #33	NVL (ENSECAG00000014421) #34	DEGS1 (ENSECAG00000000186) #35	FBXO28 (ENSECAG00000002428) #37
Eulipotyphla	ANCESTRAL SPECIES	440																ENSGT00390000010056 #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	4072																ENSEEUG00000002371 #22
Hedgehog	MODERN SPECIES	4075																ENSEEUG00000001111 #22
Common shrew	MODERN SPECIES	3088																ENSSARG00000014089 #22	TMEM63A (ENSSARG00000014071) #25	ENSSARG00000014069 #26
Atlantogenata	ANCESTRAL SPECIES	44	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Afrotheria	ANCESTRAL SPECIES	47	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861	ENSGT00390000004799	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00400000023425	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Afrotheria_a	ANCESTRAL SPECIES	48	ENSGT00940000156766	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861	ENSGT00390000004799	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Hyrax	DUPLICATION
Hyrax	MODERN SPECIES	10153															SDE2 (ENSPCAG00000011809) #21	ENSPCAG00000011877 #22
Hyrax	MODERN SPECIES	3258																ENSPCAG00000002575 #22
Elephant	DUPLICATION
Elephant	MODERN SPECIES	126	SCCPDH (ENSLAFG00000001357)	AHCTF1 (ENSLAFG00000009243)	CDC42BPA (ENSLAFG00000002527) #10	COQ8A (ENSLAFG00000002525) #11	PSEN2 (ENSLAFG00000007445) #12	ENSLAFG00000011453 #13	ENSLAFG00000028339 #13	PARP1 (ENSLAFG00000007830) #16	LIN9 (ENSLAFG00000002421) #17	MIXL1 (ENSLAFG00000022623) #18	ACBD3 (ENSLAFG00000009011) #19	ENSLAFG00000021624 ##20	SDE2 (ENSLAFG00000002195) #21	ENSLAFG00000002111 #22	ENSLAFG00000002110 #23	ENSLAFG00000002109 #22	TMEM63A (ENSLAFG00000017739) #25	EPHX1 (ENSLAFG00000017733) #26	SRP9 (ENSLAFG00000004081) #27	ENAH (ENSLAFG00000003931) #28	LBR (ENSLAFG00000010594) #29	ENSLAFG00000026932 #30	CNIH3 (ENSLAFG00000005787) #31	WDR26 (ENSLAFG00000013154) #32	CNIH4 (ENSLAFG00000014819) #33	NVL (ENSLAFG00000014807) #34	DEGS1 (ENSLAFG00000001728) #35	FBXO28 (ENSLAFG00000000621) #37	TP53BP2 (ENSLAFG00000001919)	CAPN2 (ENSLAFG00000001917)	CAPN8 (ENSLAFG00000001457)
Elephant	MODERN SPECIES	126	TFB2M (ENSLAFG00000015061)	CNST (ENSLAFG00000016089)	SCCPDH (ENSLAFG00000001357)	AHCTF1 (ENSLAFG00000009243)	CDC42BPA (ENSLAFG00000002527) #10	COQ8A (ENSLAFG00000002525) #11	PSEN2 (ENSLAFG00000007445) #12	ENSLAFG00000011453 #13	ENSLAFG00000028339 #13	PARP1 (ENSLAFG00000007830) #16	LIN9 (ENSLAFG00000002421) #17	MIXL1 (ENSLAFG00000022623) #18	ACBD3 (ENSLAFG00000009011) #19	ENSLAFG00000021624 ##20	SDE2 (ENSLAFG00000002195) #21	ENSLAFG00000002111 #22	ENSLAFG00000002110 #23	ENSLAFG00000002109 #22	TMEM63A (ENSLAFG00000017739) #25	EPHX1 (ENSLAFG00000017733) #26	SRP9 (ENSLAFG00000004081) #27	ENAH (ENSLAFG00000003931) #28	LBR (ENSLAFG00000010594) #29	ENSLAFG00000026932 #30	CNIH3 (ENSLAFG00000005787) #31	WDR26 (ENSLAFG00000013154) #32	CNIH4 (ENSLAFG00000014819) #33	NVL (ENSLAFG00000014807) #34	DEGS1 (ENSLAFG00000001728) #35	FBXO28 (ENSLAFG00000000621) #37	TP53BP2 (ENSLAFG00000001919)
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	13143																ENSETEG00000004742 #22
Tenrec	MODERN SPECIES	11781																ENSETEG00000016785 #22
Xenarthra	ANCESTRAL SPECIES	1004													ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c #23
Sloth	MODERN SPECIES	3588																ENSCHOG00000009015 #22
Armadillo	MODERN SPECIES	549													ENSDNOG00000013412 #27	EPHX1 (ENSDNOG00000009266) #26	TMEM63A (ENSDNOG00000024203) #25	ENSDNOG00000034833 #22	PYCR2 (ENSDNOG00000023877) #23
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c.a #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165101	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B.i #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c.a #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165101	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B.i #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Diprotodontia	ANCESTRAL SPECIES	7	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c.a #23	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B.i #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00390000005861	ENSGT00390000004799	ENSGT00940000163104	ENSGT00390000018900	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000157923 #12	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT00390000003188 #17	ENSGT00940000162190 #18	ENSGT00530000063651.a #19	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00950000183044.a.a.a.c.a #23	ENSGT00940000154582.b.b.b.b	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000160505 #30	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B.i #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1035	ENSVURG00010008362	ENSVURG00010008373	ENSVURG00010008421	ENSVURG00010008436	ENSVURG00010008553 #10	ENSVURG00010008694 #11	ENSVURG00010008755 #12	ENSVURG00010008828 #13	ENSVURG00010008845 #14	ENSVURG00010008888 #16	ENSVURG00010008938 #17	ENSVURG00010008959 #18	ENSVURG00010008978 #19	H3-3A (ENSVURG00010009028) #20	ENSVURG00010009034 #21	ENSVURG00010009049 #22	ENSVURG00010009077 #23	ENSVURG00010009085	ENSVURG00010009115 #25	ENSVURG00010009136 #26	ENSVURG00010009142 #27	ENSVURG00010009183 #28	ENSVURG00010009206 #29	ENSVURG00010009226 #30	ENSVURG00010009246	ENSVURG00010009284 #31	ENSVURG00010009303 #32	ENSVURG00010009318 #33	ENSVURG00010009330 #34	ENSVURG00010009362 #35	ENSVURG00010009368 #37
Common wonbat	MODERN SPECIES	1035	ENSVURG00010015915	ENSVURG00010015925	ENSVURG00010015938	ENSVURG00010015965	ENSVURG00010016001 #10	ENSVURG00010016076 #11	ENSVURG00010016090 #12	ENSVURG00010016107 #13	ENSVURG00010016121 #14	ENSVURG00010016132 #16	ENSVURG00010016145 #17	ENSVURG00010016150 #18	ENSVURG00010016163 #19	ENSVURG00010016172 ##20	ENSVURG00010016188 #21	ENSVURG00010016197 #22	ENSVURG00010016219 #23	ENSVURG00010016227	ENSVURG00010016235 #25	ENSVURG00010016255 #26	ENSVURG00010016263 #27	ENSVURG00010016298 #28	ENSVURG00010016408 #29	ENSVURG00010016426 #30	ENSVURG00010016446	ENSVURG00010016460 #31	ENSVURG00010016481 #32	ENSVURG00010016496 #33	ENSVURG00010016506 #34	ENSVURG00010016543 #35	ENSVURG00010016554 #37
koala	MODERN SPECIES	12	CNST (ENSPCIG00000003285)	SCCPDH (ENSPCIG00000003299)	ENSPCIG00000003346	AHCTF1 (ENSPCIG00000003367)	CDC42BPA (ENSPCIG00000006500) #10	COQ8A (ENSPCIG00000006475) #11	PSEN2 (ENSPCIG00000006466) #12	ITPKB (ENSPCIG00000006460) #13	STUM (ENSPCIG00000006458) #14	PARP1 (ENSPCIG00000006436) #16	LIN9 (ENSPCIG00000017472) #17	MIXL1 (ENSPCIG00000033591) #18	ACBD3 (ENSPCIG00000017469) #19	ENSPCIG00000017467 ##20	SDE2 (ENSPCIG00000017466) #21	ENSPCIG00000017464 #22	ENSPCIG00000017431 #23	ENSPCIG00000017425	TMEM63A (ENSPCIG00000017422) #25	EPHX1 (ENSPCIG00000017401) #26	SRP9 (ENSPCIG00000017399) #27	ENAH (ENSPCIG00000017396) #28	LBR (ENSPCIG00000016938) #29	ENSPCIG00000016927 #30	ENSPCIG00000016922 #30	ENSPCIG00000016915	CNIH3 (ENSPCIG00000016913) #31	WDR26 (ENSPCIG00000016910) #32	ENSPCIG00000016909 #33	ENSPCIG00000031021	NVL (ENSPCIG00000016904) #34
Wallaby	MODERN SPECIES	5117																ENSMEUG00000001000 #22
Tasmanian devil	MODERN SPECIES	3	CNST (ENSSHAG00000009416)	SCCPDH (ENSSHAG00000023977)	ENSSHAG00000007631	ENSSHAG00000010887 #10	COQ8A (ENSSHAG00000010722) #11	PSEN2 (ENSSHAG00000010004) #12	ITPKB (ENSSHAG00000026815) #13	STUM (ENSSHAG00000025821) #14	PARP1 (ENSSHAG00000001991) #16	LIN9 (ENSSHAG00000008594) #17	MIXL1 (ENSSHAG00000008490) #18	ENSSHAG00000032275	ACBD3 (ENSSHAG00000007387) #19	ENSSHAG00000031306 ##20	SDE2 (ENSSHAG00000023306) #21	ENSSHAG00000014418 #22	ENSSHAG00000014345 #23	TMEM63A (ENSSHAG00000020965) #25	EPHX1 (ENSSHAG00000013636) #26	SRP9 (ENSSHAG00000013504) #27	ENAH (ENSSHAG00000029257) #28	LBR (ENSSHAG00000011098) #29	ENSSHAG00000024047	WDR26 (ENSSHAG00000007205) #32	CNIH4 (ENSSHAG00000027162) #33	NVL (ENSSHAG00000005391) #34	DEGS1 (ENSSHAG00000004372) #35	FBXO28 (ENSSHAG00000029324) #37	TP53BP2 (ENSSHAG00000015392)	CAPN2 (ENSSHAG00000027599)	ENSSHAG00000014684
Opossum	MODERN SPECIES	1	SCCPDH (ENSMODG00000006356)	ENSMODG00000024676	AHCTF1 (ENSMODG00000006310)	CDC42BPA (ENSMODG00000006246) #10	COQ8A (ENSMODG00000006151) #11	PSEN2 (ENSMODG00000006114) #12	ITPKB (ENSMODG00000006095) #13	STUM (ENSMODG00000027423) #14	PARP1 (ENSMODG00000006076) #16	LIN9 (ENSMODG00000006033) #17	MIXL1 (ENSMODG00000005994) #18	ACBD3 (ENSMODG00000005990) #19	H3F3B (ENSMODG00000045947) ##20	SDE2 (ENSMODG00000005979) #21	ENSMODG00000050067	ENSMODG00000005964 #22	ENSMODG00000005956 #23	TMEM63A (ENSMODG00000005934) #25	EPHX1 (ENSMODG00000005882) #26	SRP9 (ENSMODG00000038570) #27	ENAH (ENSMODG00000005856) #28	ENSMODG00000005848 #29	ENSMODG00000043253	ENSMODG00000005822	ENSMODG00000005248	CNIH3 (ENSMODG00000038171) #31	ENSMODG00000040191	WDR26 (ENSMODG00000005227) #32	ENSMODG00000005180 #33	NVL (ENSMODG00000005163) #34	DEGS1 (ENSMODG00000005128) #37
Platypus	MODERN SPECIES	10	CAPN8 (ENSOANG00000001449)	CAPN2 (ENSOANG00000001450)	TP53BP2 (ENSOANG00000001453)	FBXO28 (ENSOANG00000001454) #37	DEGS1 (ENSOANG00000001455) #35	NVL (ENSOANG00000001457) #34	CNIH4 (ENSOANG00000043482) #33	WDR26 (ENSOANG00000037128) #32	ENSOANG00000050981 #31	ENSOANG00000001463	LBR (ENSOANG00000001469) #29	ENAH (ENSOANG00000001471) #28	SRP9 (ENSOANG00000050463) #27	EPHX1 (ENSOANG00000001473) #26	ENSOANG00000001474 #25	ENSOANG00000001480 #22	SDE2 (ENSOANG00000001481) #21	ENSOANG00000037953 #20	ENSOANG00000050350 #19	ENSOANG00000043340 #19	MIXL1 (ENSOANG00000001484) #18	LIN9 (ENSOANG00000001486) #17	PARP1 (ENSOANG00000001488) #16	ENSOANG00000050466 #14	ENSOANG00000001517 #13	PSEN2 (ENSOANG00000010238) #12	COQ8A (ENSOANG00000010237) #11	CDC42BPA (ENSOANG00000010240) #10	AHCTF1 (ENSOANG00000010242)	SCCPDH (ENSOANG00000010244)	CNST (ENSOANG00000010245)
Sauria	ANCESTRAL SPECIES	1	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00940000170165	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Lepidosauria	ANCESTRAL SPECIES		ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00940000170165	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000162640	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Episquamata	ANCESTRAL SPECIES		ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000162640	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000162640	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Elapidae	ANCESTRAL SPECIES		ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000160421	ENSGT00940000158182	ENSGT00960000189514
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000158182	ENSGT00960000189514	ENSGT00950000182836.a
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000158182	ENSGT00960000189514	ENSGT00950000182836.a
Eastern brown snake	MODERN SPECIES	5	CAPN2 (ENSPTXG00000012829)	TP53BP2 (ENSPTXG00000012826)	FBXO28 (ENSPTXG00000012824) #37	DEGS1 (ENSPTXG00000012823) #35	NVL (ENSPTXG00000012820) #34	CNIH4 (ENSPTXG00000012819) #33	WDR26 (ENSPTXG00000012818) #32	CNIH3 (ENSPTXG00000012817) #31	ENSPTXG00000012816	ENSPTXG00000012815	LBR (ENSPTXG00000012814) #29	ENAH (ENSPTXG00000012813) #28	SRP9 (ENSPTXG00000012812) #27	EPHX1 (ENSPTXG00000012811) #26	TMEM63A (ENSPTXG00000012810) #25	ENSPTXG00000012809 #22	SDE2 (ENSPTXG00000012808) #21	ENSPTXG00000012807 ##20	ACBD3 (ENSPTXG00000012806) #19	LIN9 (ENSPTXG00000012798) #17	PARP1 (ENSPTXG00000012779) #16	STUM (ENSPTXG00000012777) #14	ITPKB (ENSPTXG00000012775) #13	PSEN2 (ENSPTXG00000012773) #12	COQ8A (ENSPTXG00000012772) #11	CDC42BPA (ENSPTXG00000012771) #10	XDH (ENSPTXG00000012770)	ENSPTXG00000012769	GALNT14 (ENSPTXG00000012766)	ENSPTXG00000012763	LCLAT1 (ENSPTXG00000012762)
Mainland tiger snake	MODERN SPECIES	3	TP53BP2 (ENSNSUG00000009945)	FBXO28 (ENSNSUG00000009944) #37	DEGS1 (ENSNSUG00000009943) #35	NVL (ENSNSUG00000009942) #34	CNIH4 (ENSNSUG00000009941) #33	WDR26 (ENSNSUG00000009940) #32	CNIH3 (ENSNSUG00000009939) #31	ENSNSUG00000009938	ENSNSUG00000009937	LBR (ENSNSUG00000009936) #29	ENSNSUG00000009935	ENAH (ENSNSUG00000009934) #28	SRP9 (ENSNSUG00000009933) #27	EPHX1 (ENSNSUG00000009932) #26	TMEM63A (ENSNSUG00000009855) #25	ENSNSUG00000009854 #22	SDE2 (ENSNSUG00000009853) #21	ENSNSUG00000009852 ##20	ACBD3 (ENSNSUG00000009851) #19	LIN9 (ENSNSUG00000009850) #17	PARP1 (ENSNSUG00000009467) #16	STUM (ENSNSUG00000009466) #14	ITPKB (ENSNSUG00000009465) #13	PSEN2 (ENSNSUG00000009464) #12	COQ8A (ENSNSUG00000009463) #11	ENSNSUG00000009462	CDC42BPA (ENSNSUG00000009460) #10	XDH (ENSNSUG00000009459)	ENSNSUG00000009458	GALNT14 (ENSNSUG00000009455)	ENSNSUG00000009454
Blue-lipped sea krait	MODERN SPECIES	4314															TMEM63A (ENSLLTG00000014098) #25	ENSLLTG00000014089 #22
Indian cobra	MODERN SPECIES		CAPN8 (ENSNNAG00000016395)	CAPN2 (ENSNNAG00000016514)	TP53BP2 (ENSNNAG00000016530)	FBXO28 (ENSNNAG00000016574) #37	NVL (ENSNNAG00000016588) #34	ENSNNAG00000016608	CNIH4 (ENSNNAG00000016610) #33	WDR26 (ENSNNAG00000016619) #32	CNIH3 (ENSNNAG00000016652) #31	ENSNNAG00000000009	LBR (ENSNNAG00000000014) #29	ENAH (ENSNNAG00000000021) #28	SRP9 (ENSNNAG00000000026) #27	ENSNNAG00000000028	TMEM63A (ENSNNAG00000000031) #25	ENSNNAG00000000034 #22	SDE2 (ENSNNAG00000000037) #21	ENSNNAG00000000040 ##20	ACBD3 (ENSNNAG00000000043) #19	LIN9 (ENSNNAG00000000045) #17	PARP1 (ENSNNAG00000000049) #16	STUM (ENSNNAG00000000052) #14	ITPKB (ENSNNAG00000000056) #13	PSEN2 (ENSNNAG00000000059) #12	COQ8A (ENSNNAG00000000067) #11	CDC42BPA (ENSNNAG00000001082) #10	ENSNNAG00000015682	XDH (ENSNNAG00000015694)	CAPN14 (ENSNNAG00000015750)	GALNT14 (ENSNNAG00000015783)	LCLAT1 (ENSNNAG00000015804)
Lizard	MODERN SPECIES		NVL (ENSACAG00000005476) #34	CNIH4 (ENSACAG00000005510) #33	WDR26 (ENSACAG00000005514) #32	CNIH3 (ENSACAG00000037336) #31	ENSACAG00000031958	ENSACAG00000038832	ENSACAG00000005625	LBR (ENSACAG00000005649) #29	ENSACAG00000038070	ENAH (ENSACAG00000005736) #28	ENSACAG00000037803	SRP9 (ENSACAG00000005788) #27	ENSACAG00000043572	EPHX1 (ENSACAG00000005795) #26	TMEM63A (ENSACAG00000005883) #25	ENSACAG00000005997 #22	SDE2 (ENSACAG00000006012) #21	ENSACAG00000026224 ##20	ACBD3 (ENSACAG00000006052) #19	LIN9 (ENSACAG00000006122) #17	PARP1 (ENSACAG00000006189) #16	STUM (ENSACAG00000006377) #14	ITPKB (ENSACAG00000006393) #13	PSEN2 (ENSACAG00000006455) #12	COQ8A (ENSACAG00000006522) #11	CDC42BPA (ENSACAG00000006624) #10	XDH (ENSACAG00000006868)	ENSACAG00000041707	ehd3 (ENSACAG00000043712)	ENSACAG00000007149	ENSACAG00000041838
Laterata	ANCESTRAL SPECIES	4	ENSGT00940000154784.D.a.b.e	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.b ##20	ENSGT00530000063651.a #19	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000162640	ENSGT00940000159274.c.a	ENSGT00940000160421	ENSGT00940000158182
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000002992 #35	ENSPMRG00000002985 #35	ENSPMRG00000002976	NVL (ENSPMRG00000002952) #34	CNIH4 (ENSPMRG00000002935) #33	WDR26 (ENSPMRG00000002904) #32	CNIH3 (ENSPMRG00000002879) #31	ENSPMRG00000002859	ENSPMRG00000002834	ENSPMRG00000002825	LBR (ENSPMRG00000002811) #29	SRP9 (ENSPMRG00000002803) #27	ENAH (ENSPMRG00000002767) #28	EPHX1 (ENSPMRG00000002742) #26	TMEM63A (ENSPMRG00000002722) #25	ENSPMRG00000002710 #22	SDE2 (ENSPMRG00000002691) #21	ENSPMRG00000002676 ##20	ACBD3 (ENSPMRG00000002653) #19	ENSPMRG00000002641	LIN9 (ENSPMRG00000002605) #17	PARP1 (ENSPMRG00000002352) #16	STUM (ENSPMRG00000002290) #14	ENSPMRG00000002286	ITPKB (ENSPMRG00000002280) #13	PSEN2 (ENSPMRG00000002276) #12	COQ8A (ENSPMRG00000002258) #11	CDC42BPA (ENSPMRG00000002174) #10	XDH (ENSPMRG00000002140)	ENSPMRG00000002135	ENSPMRG00000002129
Argentine black and white tegu	MODERN SPECIES	7	CAPN2 (ENSSMRG00000000459)	TP53BP2 (ENSSMRG00000000543)	ENSSMRG00000000585	FBXO28 (ENSSMRG00000000640) #37	DEGS1 (ENSSMRG00000000647) #35	NVL (ENSSMRG00000000653) #34	CNIH4 (ENSSMRG00000000692) #33	WDR26 (ENSSMRG00000000713) #32	CNIH3 (ENSSMRG00000000764) #31	ENSSMRG00000000780	LBR (ENSSMRG00000000922) #29	ENAH (ENSSMRG00000000950) #28	SRP9 (ENSSMRG00000000983) #27	EPHX1 (ENSSMRG00000000993) #26	TMEM63A (ENSSMRG00000001043) #25	ENSSMRG00000001070 #22	SDE2 (ENSSMRG00000001076) #21	H3-3A (ENSSMRG00000001173) #20	ENSSMRG00000001178	ACBD3 (ENSSMRG00000001183) #19	LIN9 (ENSSMRG00000001191) #17	PARP1 (ENSSMRG00000001210) #16	ENSSMRG00000001231	STUM (ENSSMRG00000001238) #14	ITPKB (ENSSMRG00000001272) #13	PSEN2 (ENSSMRG00000001279) #12	COQ8A (ENSSMRG00000001316) #11	CDC42BPA (ENSSMRG00000001396) #10	XDH (ENSSMRG00000001429)	ENSSMRG00000001438	ENSSMRG00000001440
tuatara	MODERN SPECIES	1150														EPHX1 (ENSSPUG00000007688) #26	ENSSPUG00000007703 #25	ENSSPUG00000007732 #22	SDE2 (ENSSPUG00000007741) #21	ENSSPUG00000007754 #20	ACBD3 (ENSSPUG00000007760) #19	LIN9 (ENSSPUG00000007769) #17	PARP1 (ENSSPUG00000007790) #16
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00940000170165	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00940000170165	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.a #20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Aves	ANCESTRAL SPECIES	12	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00940000170165	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00940000170165	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000159274	ENSGT00940000160421
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00940000170165	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000159274	ENSGT00940000160421
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000160410	ENSGT00940000160090	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.a #20	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000159274
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000160410	ENSGT00940000160090	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.a #20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000159274	ENSGT00940000160421
Passeriformes_g	ANCESTRAL SPECIES	52			ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000159274	ENSGT00940000160421
Medium ground finch	MODERN SPECIES	137		KIF16B (ENSGFOG00000009148)	CAPN2 (ENSGFOG00000009111)	TP53BP2 (ENSGFOG00000009095)	FBXO28 (ENSGFOG00000009085) #37	DEGS1 (ENSGFOG00000009082) #35	NVL (ENSGFOG00000008086) #34	CNIH4 (ENSGFOG00000008026) #33	WDR26 (ENSGFOG00000007978) #32	CNIH3 (ENSGFOG00000007963) #31	LBR (ENSGFOG00000007940) #29	ENAH (ENSGFOG00000007895) #28	SRP9 (ENSGFOG00000007887) #27	EPHX1 (ENSGFOG00000007862) #26	TMEM63A (ENSGFOG00000007843) #25	ENSGFOG00000007831 #22	SDE2 (ENSGFOG00000007825) #21	ENSGFOG00000007821 #20	ACBD3 (ENSGFOG00000007812) #19	LIN9 (ENSGFOG00000007804) #17	PARP1 (ENSGFOG00000005482) #16	STUM (ENSGFOG00000005336) #14	ITPKB (ENSGFOG00000005295) #13	PSEN2 (ENSGFOG00000005275) #12	COQ8A (ENSGFOG00000005254) #11	CDC42BPA (ENSGFOG00000005198) #10	XDH (ENSGFOG00000005138)	EHD3 (ENSGFOG00000005125)	ENSGFOG00000005113	GALNT14 (ENSGFOG00000005014)	ENSGFOG00000004987
Passeroidea	ANCESTRAL SPECIES	52			ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00960000189414	ENSGT00940000159274	ENSGT00940000160421
Zebra finch	MODERN SPECIES	23	EPAS1 (ENSTGUG00000003933)	PIGF (ENSTGUG00000028368)	CRIPT (ENSTGUG00000021464)	ENSTGUG00000024367	TP53BP2 (ENSTGUG00000003997)	FBXO28 (ENSTGUG00000004015) #37	DEGS1 (ENSTGUG00000021206) #35	NVL (ENSTGUG00000004033) #34	CNIH4 (ENSTGUG00000025113) #33	WDR26 (ENSTGUG00000004059) #32	CNIH3 (ENSTGUG00000004070) #31	LBR (ENSTGUG00000004083) #29	ENAH (ENSTGUG00000004097) #28	EPHX1 (ENSTGUG00000004133) #26	TMEM63A (ENSTGUG00000004155) #25	ENSTGUG00000004196 #22	SDE2 (ENSTGUG00000004203) #21	H3F3A (ENSTGUG00000004210) ##20	ACBD3 (ENSTGUG00000004214) #19	MIXL1 (ENSTGUG00000004229) #18	LIN9 (ENSTGUG00000004230) #17	PARP1 (ENSTGUG00000004260) #16	STUM (ENSTGUG00000019558) #14	ITPKB (ENSTGUG00000004318) #13	PSEN2 (ENSTGUG00000004332) #12	COQ8A (ENSTGUG00000004345) #11	CDC42BPA (ENSTGUG00000004365) #10	XDH (ENSTGUG00000004450)	ENSTGUG00000027533	EHD3 (ENSTGUG00000004572)	CAPN14 (ENSTGUG00000004597)
Common canary	MODERN SPECIES	23	KIF16B (ENSSCAG00000015062)	CAPN2 (ENSSCAG00000015110)	TP53BP2 (ENSSCAG00000015158)	FBXO28 (ENSSCAG00000015167) #37	DEGS1 (ENSSCAG00000015175) #35	NVL (ENSSCAG00000015178) #34	CNIH4 (ENSSCAG00000015185) #33	ENSSCAG00000015189	WDR26 (ENSSCAG00000015199) #32	CNIH3 (ENSSCAG00000015221) #31	LBR (ENSSCAG00000015229) #29	ENAH (ENSSCAG00000015236) #28	SRP9 (ENSSCAG00000015245) #27	EPHX1 (ENSSCAG00000015248) #26	TMEM63A (ENSSCAG00000015253) #25	ENSSCAG00000015254 #22	SDE2 (ENSSCAG00000015257) #21	ENSSCAG00000015261 ##20	ACBD3 (ENSSCAG00000015263) #19	LIN9 (ENSSCAG00000015268) #17	PARP1 (ENSSCAG00000015316) #16
Flycatcher	MODERN SPECIES	21	CAPN8 (ENSFALG00000011920)	CAPN2 (ENSFALG00000011873)	TP53BP2 (ENSFALG00000011838)	FBXO28 (ENSFALG00000026434) #37	ENSFALG00000024961	NVL (ENSFALG00000011798) #34	DEGS1 (ENSFALG00000011808) #35	WDR26 (ENSFALG00000011769) #32	CNIH3 (ENSFALG00000011756) #31	LBR (ENSFALG00000011738) #29	ENAH (ENSFALG00000011701) #28	ENSFALG00000024751	SRP9 (ENSFALG00000023050) #27	EPHX1 (ENSFALG00000011683) #26	TMEM63A (ENSFALG00000011672) #25	ENSFALG00000011659 #22	SDE2 (ENSFALG00000011644) #21	ENSFALG00000011637 #20	ACBD3 (ENSFALG00000011626) #19	LIN9 (ENSFALG00000011618) #17	PARP1 (ENSFALG00000011578) #16	STUM (ENSFALG00000024398) #14	ENSFALG00000023589	ITPKB (ENSFALG00000027989) #13	PSEN2 (ENSFALG00000011534) #12	COQ8A (ENSFALG00000011530) #11	CDC42BPA (ENSFALG00000011522) #10	XDH (ENSFALG00000011478)	ENSFALG00000025053	EHD3 (ENSFALG00000011448)	CAPN14 (ENSFALG00000011401)
Great tit	MODERN SPECIES	22	CAPN8 (ENSPMJG00000011885)	CAPN2 (ENSPMJG00000011884)	TP53BP2 (ENSPMJG00000011883)	FBXO28 (ENSPMJG00000011881) #37	DEGS1 (ENSPMJG00000011880) #35	NVL (ENSPMJG00000011879) #34	CNIH4 (ENSPMJG00000011878) #33	WDR26 (ENSPMJG00000011842) #32	CNIH3 (ENSPMJG00000011841) #31	LBR (ENSPMJG00000011840) #29	ENSPMJG00000011839	ENAH (ENSPMJG00000011838) #28	ENSPMJG00000011836	EPHX1 (ENSPMJG00000011835) #26	TMEM63A (ENSPMJG00000011834) #25	ENSPMJG00000011833 #22	SDE2 (ENSPMJG00000011831) #21	ENSPMJG00000011830 ##20	ACBD3 (ENSPMJG00000011829) #19	ENSPMJG00000011828 #18	LIN9 (ENSPMJG00000011827) #17	PARP1 (ENSPMJG00000011359) #16	STUM (ENSPMJG00000011358) #14	ITPKB (ENSPMJG00000011356) #13	PSEN2 (ENSPMJG00000011355) #12	COQ8A (ENSPMJG00000011352) #11	CDC42BPA (ENSPMJG00000011335) #10	XDH (ENSPMJG00000009005)	ENSPMJG00000008998	EHD3 (ENSPMJG00000008997)	CAPN14 (ENSPMJG00000008988)
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00940000170165	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000158182	ENSGT00940000160921
Kakapo	MODERN SPECIES	2	CAPN2 (ENSSHBG00005019972)	TP53BP2 (ENSSHBG00005019959)	FBXO28 (ENSSHBG00005019953) #37	DEGS1 (ENSSHBG00005019951) #35	NVL (ENSSHBG00005019949) #34	ENSSHBG00005019945	CNIH4 (ENSSHBG00005019944) #33	WDR26 (ENSSHBG00005019940) #32	CNIH3 (ENSSHBG00005019936) #31	ENSSHBG00005019932	LBR (ENSSHBG00005019928) #29	ENAH (ENSSHBG00005019923) #28	SRP9 (ENSSHBG00005019918) #27	EPHX1 (ENSSHBG00005019915) #26	TMEM63A (ENSSHBG00005019913) #25	ENSSHBG00005019911 #22	SDE2 (ENSSHBG00005019907) #21	ENSSHBG00005019904 ##20	ACBD3 (ENSSHBG00005019903) #19	MIXL1 (ENSSHBG00005019902) #18	LIN9 (ENSSHBG00005019901) #17	PARP1 (ENSSHBG00005019898) #16	ITPKB (ENSSHBG00005019893) #13	PSEN2 (ENSSHBG00005019888) #12	COQ8A (ENSSHBG00005019880) #11	CDC42BPA (ENSSHBG00005019873) #10	XDH (ENSSHBG00005013552)	EHD3 (ENSSHBG00005012372)	ENSSHBG00005012362	GALNT14 (ENSSHBG00005012346)	ENSSHBG00005012332
Golden eagle	MODERN SPECIES	4	SUSD4 (ENSACCG00020013772)	CAPN8 (ENSACCG00020013745)	CAPN2 (ENSACCG00020013713)	TP53BP2 (ENSACCG00020013658)	FBXO28 (ENSACCG00020013552) #37	DEGS1 (ENSACCG00020013532) #35	NVL (ENSACCG00020013513) #34	CNIH4 (ENSACCG00020013489) #33	WDR26 (ENSACCG00020013450) #32	CNIH3 (ENSACCG00020013406) #31	LBR (ENSACCG00020013359) #29	ENAH (ENSACCG00020013315) #28	SRP9 (ENSACCG00020013255) #27	EPHX1 (ENSACCG00020013246) #26	TMEM63A (ENSACCG00020013208) #25	ENSACCG00020013138 #22	SDE2 (ENSACCG00020013122) #21	ENSACCG00020013104 ##20	ACBD3 (ENSACCG00020013090) #19	ENSACCG00020013075	LIN9 (ENSACCG00020013062) #17	PARP1 (ENSACCG00020013013) #16	STUM (ENSACCG00020012947) #14	ITPKB (ENSACCG00020012928) #13	ENSACCG00020012909	PSEN2 (ENSACCG00020012879) #12	COQ8A (ENSACCG00020012847) #11	CDC42BPA (ENSACCG00020012470) #10	XDH (ENSACCG00020012219)	ENSACCG00020012159	EHD3 (ENSACCG00020012137)
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Anatidae	ANCESTRAL SPECIES	11	ENSGT00940000156560	ENSGT00730000111187.b	ENSGT00730000111187.a.b	ENSGT00940000156874	ENSGT00940000157082	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00940000157391	ENSGT00390000012703.a	ENSGT01030000234625.B.c	ENSGT00720000108846.a	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000158182	ENSGT00940000160921
Pink-footed goose	MODERN SPECIES	3	KCNK2 (ENSABRG00000015838)	ENSABRG00000015844	CENPF (ENSABRG00000015855)	PTPN14 (ENSABRG00000015879)	SMYD2 (ENSABRG00000015892)	PROX1 (ENSABRG00000015908)	RPS6KC1 (ENSABRG00000015926)	ANGEL2 (ENSABRG00000015955)	VASH2 (ENSABRG00000015959)	FLVCR1 (ENSABRG00000015963)	TATDN3 (ENSABRG00000015988)	NSL1 (ENSABRG00000015997)	BATF3 (ENSABRG00000016001)	ATF3 (ENSABRG00000016011)	ENSABRG00000016021 #25	ENSABRG00000016026 #22	SDE2 (ENSABRG00000016032) #21	ENSABRG00000016045 ##20	ACBD3 (ENSABRG00000016051) #19	LIN9 (ENSABRG00000016056) #17	PARP1 (ENSABRG00000016116) #16	STUM (ENSABRG00000016739) #14	ITPKB (ENSABRG00000016742) #13	PSEN2 (ENSABRG00000016747) #12	COQ8A (ENSABRG00000016752) #11	CDC42BPA (ENSABRG00000016763) #10	XDH (ENSABRG00000016799)	EHD3 (ENSABRG00000016823)	GALNT14 (ENSABRG00000016844)	ENSABRG00000016916	ENSABRG00000016923
Duck	MODERN SPECIES	21	ENSAPLG00000026344	ENSAPLG00000023638	CENPF (ENSAPLG00000009924)	PTPN14 (ENSAPLG00000010016)	SMYD2 (ENSAPLG00000010622)	PROX1 (ENSAPLG00000028813)	RPS6KC1 (ENSAPLG00000011098)	ANGEL2 (ENSAPLG00000011269)	VASH2 (ENSAPLG00000011439)	FLVCR1 (ENSAPLG00000011448)	TATDN3 (ENSAPLG00000011801)	NSL1 (ENSAPLG00000024285)	BATF3 (ENSAPLG00000025402)	ATF3 (ENSAPLG00000012304)	ENSAPLG00000012312 #25	ENSAPLG00000013195 #22	SDE2 (ENSAPLG00000013231) #21	ENSAPLG00000024151 ##20	ACBD3 (ENSAPLG00000013267) #19	MIXL1 (ENSAPLG00000025166) #18	LIN9 (ENSAPLG00000013627) #17	PARP1 (ENSAPLG00000014039) #16	STUM (ENSAPLG00000017920) #14	ITPKB (ENSAPLG00000014056) #13	PSEN2 (ENSAPLG00000014082) #12	COQ8A (ENSAPLG00000014501) #11	CDC42BPA (ENSAPLG00000012422) #10	XDH (ENSAPLG00000010946)	EHD3 (ENSAPLG00000010467)	GALNT14 (ENSAPLG00000009654)	CAPN13 (ENSAPLG00000009169)
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00530000063557.b	ENSGT00940000155483
Japanese quail	MODERN SPECIES	21	SUSD4 (ENSCJPG00005007148)	CAPN8 (ENSCJPG00005007128)	CAPN2 (ENSCJPG00005007127)	TP53BP2 (ENSCJPG00005007112)	FBXO28 (ENSCJPG00005007111) #37	DEGS1 (ENSCJPG00005007110) #35	NVL (ENSCJPG00005006952) #34	CNIH4 (ENSCJPG00005006951) #33	WDR26 (ENSCJPG00005006800) #32	CNIH3 (ENSCJPG00005006786) #31	LBR (ENSCJPG00005006681) #29	ENAH (ENSCJPG00005006656) #28	SRP9 (ENSCJPG00005006653) #27	EPHX1 (ENSCJPG00005006652) #26	TMEM63A (ENSCJPG00005006368) #25	ENSCJPG00005006343 #22	SDE2 (ENSCJPG00005006290) #21	ENSCJPG00005006285 ##20	ACBD3 (ENSCJPG00005006282) #19	ENSCJPG00005006281	LIN9 (ENSCJPG00005006227) #17	PARP1 (ENSCJPG00005006094) #16	STUM (ENSCJPG00005006093) #14	CRLS1 (ENSCJPG00005006070)	MCM8 (ENSCJPG00005006040)	TRMT6 (ENSCJPG00005005974)	CHGB (ENSCJPG00005005973)	SHLD1 (ENSCJPG00005005971)	GPCPD1 (ENSCJPG00005005678)	THUMPD2 (ENSCJPG00005005677)	ENSCJPG00005005676
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165801	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00530000063557.b	ENSGT00940000155483
Turkey	MODERN SPECIES	11	CAPN8 (ENSMGAG00000008330)	CAPN2 (ENSMGAG00000008632)	TP53BP2 (ENSMGAG00000008584)	FBXO28 (ENSMGAG00000008318) #37	DEGS1 (ENSMGAG00000008298) #35	NVL (ENSMGAG00000008258) #34	CNIH4 (ENSMGAG00000008252) #33	WDR26 (ENSMGAG00000008239) #32	CNIH3 (ENSMGAG00000008216) #31	LBR (ENSMGAG00000022445) #29	ENSMGAG00000008149	ENAH (ENSMGAG00000008071) #28	SRP9 (ENSMGAG00000008061) #27	EPHX1 (ENSMGAG00000008044) #26	TMEM63A (ENSMGAG00000007986) #25	ENSMGAG00000007976 #22	SDE2 (ENSMGAG00000007959) #21	ENSMGAG00000020931 ##20	ACBD3 (ENSMGAG00000007919) #19	LIN9 (ENSMGAG00000007858) #17	PARP1 (ENSMGAG00000007760) #16	STUM (ENSMGAG00000022723) #14	CRLS1 (ENSMGAG00000007742)	MCM8 (ENSMGAG00000007701)	TRMT6 (ENSMGAG00000007678)	CHGB (ENSMGAG00000007670)	ENSMGAG00000007668	ENSMGAG00000007629	ENSMGAG00000007605	ENSMGAG00000007494	ENSMGAG00000019993
Chicken	MODERN SPECIES	22	CAPN8 (ENSGALG00010016656)	CAPN2 (ENSGALG00010016626)	TP53BP2 (ENSGALG00010016604)	FBXO28 (ENSGALG00010016589) #37	DEGS1 (ENSGALG00010016573) #35	NVL (ENSGALG00010016565) #34	CNIH4 (ENSGALG00010016533) #33	WDR26 (ENSGALG00010016483) #32	CNIH3 (ENSGALG00010016477) #31	ENSGALG00010016467	LBR (ENSGALG00010016460) #29	SRP9 (ENSGALG00010016047) #27	ENAH (ENSGALG00010015989) #28	EPHX1 (ENSGALG00010015935) #26	TMEM63A (ENSGALG00010015917) #25	LEFTY1 (ENSGALG00010017549) #22	SDE2 (ENSGALG00010017544) #21	H3F3C (ENSGALG00010017538) ##20	MIXL1 (ENSGALG00010017532) #18	ACBD3 (ENSGALG00010017524) #19	LIN9 (ENSGALG00010017517) #17	PARP1 (ENSGALG00010017496) #16	STUM (ENSGALG00010017475) #14	CRLS1 (ENSGALG00010017471)	MCM8 (ENSGALG00010017462)	TRMT6 (ENSGALG00010017449)	CHGB (ENSGALG00010017418)	GPCPD1 (ENSGALG00010017352)	THUMPD2 (ENSGALG00010017335)	MAP4K3 (ENSGALG00010017313)	SOS1 (ENSGALG00010017280)
African ostrich	MODERN SPECIES	211	CAPN2 (ENSSCUG00000003204)	TP53BP2 (ENSSCUG00000003200)	FBXO28 (ENSSCUG00000003199) #37	DEGS1 (ENSSCUG00000003198) #35	NVL (ENSSCUG00000003175) #34	CNIH4 (ENSSCUG00000003156) #33	WDR26 (ENSSCUG00000003155) #32	CNIH3 (ENSSCUG00000003149) #31	ENSSCUG00000003148	LBR (ENSSCUG00000003144) #29	ENAH (ENSSCUG00000003136) #28	ENSSCUG00000003131	ENSSCUG00000003130	EPHX1 (ENSSCUG00000003127) #26	TMEM63A (ENSSCUG00000003125) #25	ENSSCUG00000003119 #22	SDE2 (ENSSCUG00000003112) #21	ENSSCUG00000003110 ##20	ACBD3 (ENSSCUG00000003107) #19	LIN9 (ENSSCUG00000003104) #17	PARP1 (ENSSCUG00000003097) #16	STUM (ENSSCUG00000003096) #14	PSEN2 (ENSSCUG00000003093) #12	COQ8A (ENSSCUG00000003091) #11	CDC42BPA (ENSSCUG00000003085) #10	ENSSCUG00000003078	XDH (ENSSCUG00000003075)	ENSSCUG00000003071	EHD3 (ENSSCUG00000003068)	CAPN14 (ENSSCUG00000003062)	GALNT14 (ENSSCUG00000003057)
Australian saltwater crocodile	MODERN SPECIES	60	NVL (ENSCPRG00005002926) #34	DEGS1 (ENSCPRG00005002958) #35	CNIH4 (ENSCPRG00005002963) #33	WDR26 (ENSCPRG00005002982) #32	CNIH3 (ENSCPRG00005003107) #31	ENSCPRG00005003133	ENSCPRG00005003164	ENSCPRG00005003169	LBR (ENSCPRG00005003175) #29	ENSCPRG00005003203	ENSCPRG00005003215 #28	ENSCPRG00005003221 #28	SRP9 (ENSCPRG00005003245) #27	EPHX1 (ENSCPRG00005003255) #26	TMEM63A (ENSCPRG00005003380) #25	ENSCPRG00005003387 #22	SDE2 (ENSCPRG00005003391) #21	ENSCPRG00005003407 #20	ACBD3 (ENSCPRG00005003412) #19	LIN9 (ENSCPRG00005003428) #17	PARP1 (ENSCPRG00005003441) #16	PSEN2 (ENSCPRG00005003466) #12	COQ8A (ENSCPRG00005003488) #11	CDC42BPA (ENSCPRG00005004049) #10	XDH (ENSCPRG00005008316)	EHD3 (ENSCPRG00005008338)	CAPN14 (ENSCPRG00005008377)	GALNT14 (ENSCPRG00005008412)	ENSCPRG00005008477	LCLAT1 (ENSCPRG00005008504)	ENSCPRG00005008514
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000154784.D.a.b	ENSGT00940000153463.b.f	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00940000171204	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000159274
Emydidae	ANCESTRAL SPECIES	9	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b.f	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.b.a.b ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT00940000158249	ENSGT01030000234517.G.g.a ##10	ENSGT00930000151054	ENSGT00530000063721.B	ENSGT00940000161002
Three-toed box turtle	MODERN SPECIES	186				DEGS1 (ENSTMTG00000015289) #35	NVL (ENSTMTG00000015273) #34	CNIH4 (ENSTMTG00000015260) #33	ENSTMTG00000015235 #32	CNIH3 (ENSTMTG00000015221) #31	ENSTMTG00000015215	ENSTMTG00000015003	LBR (ENSTMTG00000014956) #29	ENAH (ENSTMTG00000014893) #28	SRP9 (ENSTMTG00000014878) #27	EPHX1 (ENSTMTG00000014860) #26	TMEM63A (ENSTMTG00000014830) #25	ENSTMTG00000014798 #22	SDE2 (ENSTMTG00000014789) #21	ENSTMTG00000014776 ##20	ACBD3 (ENSTMTG00000014768) #19	MIXL1 (ENSTMTG00000014749) #18	LIN9 (ENSTMTG00000014586) #17	PARP1 (ENSTMTG00000014530) #16	ITPKB (ENSTMTG00000014515) #13	PSEN2 (ENSTMTG00000014490) #12	COQ8A (ENSTMTG00000014449) #11	CDC42BPA (ENSTMTG00000014403) #10	XDH (ENSTMTG00000014323)	ENSTMTG00000014311	EHD3 (ENSTMTG00000014300)	ENSTMTG00000014287	GALNT14 (ENSTMTG00000014235)
painted turtle	MODERN SPECIES	12	CAPN2 (ENSCPBG00000012405)	TP53BP2 (ENSCPBG00000012100)	FBXO28 (ENSCPBG00000012092) #37	NVL (ENSCPBG00000012087) #34	CNIH4 (ENSCPBG00000012084) #33	WDR26 (ENSCPBG00000012078) #32	CNIH3 (ENSCPBG00000012068) #31	ENSCPBG00000012064	ENSCPBG00000012038	ENSCPBG00000012036	LBR (ENSCPBG00000012020) #29	ENSCPBG00000012008 #28	SRP9 (ENSCPBG00000011999) #27	EPHX1 (ENSCPBG00000011996) #26	TMEM63A (ENSCPBG00000011988) #25	ENSCPBG00000011981 #22	SDE2 (ENSCPBG00000011980) #21	ENSCPBG00000011977 ##20	ACBD3 (ENSCPBG00000011972) #19	MIXL1 (ENSCPBG00000011969) #18	LIN9 (ENSCPBG00000011963) #17	PARP1 (ENSCPBG00000011958) #16	STUM (ENSCPBG00000011954) #14	ITPKB (ENSCPBG00000011950) #13	PSEN2 (ENSCPBG00000011947) #12	COQ8A (ENSCPBG00000011936) #11	CDC42BPA (ENSCPBG00000011916) #10	XDH (ENSCPBG00000011892)	EHD3 (ENSCPBG00000011884)	ENSCPBG00000011876	GALNT14 (ENSCPBG00000011857)
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00940000154784.D.a.b	ENSGT00940000153463.b.f	ENSGT00390000002970 #37	ENSGT00390000013448.a.a #35	ENSGT00570000079239 #34	ENSGT00950000182834.B #33	ENSGT00940000153634.b #32	ENSGT00950000182834.A.a.b.c #31	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000157376 #28	ENSGT00390000018505 #27	ENSGT00390000002210.d #26	ENSGT00940000159576 #25	ENSGT00390000010056 #22	ENSGT00530000063402.b #21	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063651.a #19	ENSGT00940000162190 #18	ENSGT00390000003188 #17	ENSGT00940000156058 #16	ENSGT00390000008003 #14	ENSGT00950000183107.a.b.a	ENSGT00940000156764.a #13	ENSGT00940000157923 #12	ENSGT00940000156810 #11	ENSGT01030000234517.H.b #10	ENSGT00950000183114.a.a	ENSGT00940000159274	ENSGT00950000186173
Abingdon island giant tortoise	MODERN SPECIES	634	CCDC148 (ENSCABG00000012745)	ENSCABG00000012748	DAPL1 (ENSCABG00000012752)	MELK (ENSCABG00000012754)	PAX5 (ENSCABG00000012761)	ENSCABG00000012773	ENSCABG00000012777	GRHPR (ENSCABG00000012780)	ZBTB5 (ENSCABG00000012782)	POLR1E (ENSCABG00000012784)	FBXO10 (ENSCABG00000012785)	ENAH (ENSCABG00000012789) #28	SRP9 (ENSCABG00000012832) #27	EPHX1 (ENSCABG00000012837) #26	TMEM63A (ENSCABG00000012878) #25	ENSCABG00000013283 #22	SDE2 (ENSCABG00000013288) #21
Goode s thornscrub tortoise	MODERN SPECIES	17	DEGS1 (ENSGEVG00005015810) #35	ENSGEVG00005015801	NVL (ENSGEVG00005015719) #34	CNIH4 (ENSGEVG00005015701) #33	WDR26 (ENSGEVG00005015598) #32	CNIH3 (ENSGEVG00005015546) #31	ENSGEVG00005015495	ENSGEVG00005015462	ENSGEVG00005015408	ENSGEVG00005015386	LBR (ENSGEVG00005015360) #29	ENAH (ENSGEVG00005015322) #28	SRP9 (ENSGEVG00005015297) #27	EPHX1 (ENSGEVG00005015263) #26	TMEM63A (ENSGEVG00005015156) #25	ENSGEVG00005015097 #22	SDE2 (ENSGEVG00005015082) #21	ENSGEVG00005015026 ##20	ACBD3 (ENSGEVG00005015002) #19	MIXL1 (ENSGEVG00005014953) #18	LIN9 (ENSGEVG00005014867) #17	PARP1 (ENSGEVG00005014820) #16	STUM (ENSGEVG00005014790) #14	ENSGEVG00005014678	ITPKB (ENSGEVG00005014643) #13	PSEN2 (ENSGEVG00005014558) #12	COQ8A (ENSGEVG00005014517) #11	CDC42BPA (ENSGEVG00005014464) #10	ENSGEVG00005014287 #10	XDH (ENSGEVG00005014160)	EHD3 (ENSGEVG00005014115)
Chinese turtle	MODERN SPECIES	686										ENSPSIG00000011407	LBR (ENSPSIG00000013788) #29	ENAH (ENSPSIG00000014372) #28	SRP9 (ENSPSIG00000014842) #27	EPHX1 (ENSPSIG00000015003) #26	TMEM63A (ENSPSIG00000015072) #25	ENSPSIG00000016169 #22	SDE2 (ENSPSIG00000016286) #21	ENSPSIG00000016288	ENSPSIG00000016297 ##20	ACBD3 (ENSPSIG00000016300) #19	ENSPSIG00000016352	LIN9 (ENSPSIG00000016362) #17	PARP1 (ENSPSIG00000016374) #16	STUM (ENSPSIG00000017291) #14	ITPKB (ENSPSIG00000017341) #13	PSEN2 (ENSPSIG00000017347) #12	COQ8A (ENSPSIG00000017351) #11	CDC42BPA (ENSPSIG00000017372) #10	XDH (ENSPSIG00000007446)	EHD3 (ENSPSIG00000017757)	CAPN14 (ENSPSIG00000017963)
Anura	ANCESTRAL SPECIES	21	ENSGT00940000160421	ENSGT00940000159274	ENSGT00950000183114.a.a	ENSGT00390000017697.b	ENSGT01030000234517.H.b #10	ENSGT00940000156810 #11	ENSGT00940000156764.a #13	ENSGT00390000008003 #14	ENSGT00940000156058 #16	ENSGT01030000234555.a.b	ENSGT00390000003188 #17	ENSGT00530000063651.a #19	ENSGT00390000007539.c	ENSGT01100000263504.a.b.a.a ##20	ENSGT00530000063402.b #21	ENSGT00390000010056 #22	ENSGT00940000159576 #25	ENSGT00390000002210.d #26	ENSGT00390000018505 #27	ENSGT00940000157376 #28	ENSGT00390000000417.a.a.b.a.b #29	ENSGT00940000165101	ENSGT00950000182834.A.a.b.c #31	ENSGT00940000153634.b #32	ENSGT00950000182834.B #33	ENSGT00570000079239 #34	ENSGT00390000013448.a.a #35	ENSGT00390000002970 #37	ENSGT00940000153463.b	ENSGT00940000154784.D.a.b	ENSGT00940000160090.a
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	1276																ENSLLEG00000020450 #22
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000012568	XDH (ENSLLEG00000012626)	CIAO2B (ENSLLEG00000013103)	CDC42BPA (ENSLLEG00000013288) #10	COQ8A (ENSLLEG00000015209) #11	ITPKB (ENSLLEG00000015339) #13	STUM (ENSLLEG00000015570) #14	PARP1 (ENSLLEG00000015662) #16	ENSLLEG00000015804	LIN9 (ENSLLEG00000015844) #17	ACBD3 (ENSLLEG00000016048) #19	ENSLLEG00000016183	ENSLLEG00000016221	ENSLLEG00000016356 ##20	SDE2 (ENSLLEG00000016419) #21	ENSLLEG00000016508 #22	TMEM63A (ENSLLEG00000016581) #25	EPHX1 (ENSLLEG00000017054) #26	SRP9 (ENSLLEG00000017161) #27	ENAH (ENSLLEG00000017268) #28	LBR (ENSLLEG00000017765) #29	ENSLLEG00000018068	CNIH3 (ENSLLEG00000019334) #31	WDR26 (ENSLLEG00000019495) #32	ENSLLEG00000019926 #33	ENSLLEG00000019991	NVL (ENSLLEG00000020025) #34	FBXO28 (ENSLLEG00000020481) #37	TP53BP2 (ENSLLEG00000020879)	CAPN2 (ENSLLEG00000021003)	CAPN8 (ENSLLEG00000021455)
Frog	MODERN SPECIES	5	cdc42bpa (ENSXETG00000022112) #10	coq8a (ENSXETG00000022587) #11	itpkb (ENSXETG00000022603) #13	stum (ENSXETG00000045792) #14	parp1 (ENSXETG00000022610) #16	ENSXETG00000036773	lin9 (ENSXETG00000022620) #17	ENSXETG00000048528	mix1 (ENSXETG00000025923)	bix1.2 (ENSXETG00000042078)	bix1.1 (ENSXETG00000022633)	acbd3 (ENSXETG00000022634) #19	ENSXETG00000022637	h3-3a (ENSXETG00000022641) ##20	sde2 (ENSXETG00000022643) #21	lefty (ENSXETG00000043657) #22	tmem63a (ENSXETG00000022650) #25	ENSXETG00000044567	ephx1 (ENSXETG00000022654) #26	ENSXETG00000041953	srp9 (ENSXETG00000040743) #27	enah (ENSXETG00000018550) #28	lbr (ENSXETG00000018551) #29	dnah14 (ENSXETG00000018553)	cnih3 (ENSXETG00000045361) #31	wdr26 (ENSXETG00000018563) #32	cnih4 (ENSXETG00000037711) #33	nvl (ENSXETG00000018569) #34	degs1 (ENSXETG00000018586) #35	fbxo28 (ENSXETG00000049150) #37	ENSXETG00000045761
Coelacanth	MODERN SPECIES	1472													SRP9 (ENSLACG00000007546) #27	EPHX1 (ENSLACG00000006130) #26	TMEM63A (ENSLACG00000004141) #25	lft2 (ENSLACG00000000877) #22
Actinopterygii	ANCESTRAL SPECIES	539																ENSGT00390000010056 #22	ENSGT00940000159576 #25	ENSGT00390000018686	ENSGT00390000006493	ENSGT00940000157284
Neopterygii	ANCESTRAL SPECIES	279				ENSGT00390000011270	ENSGT00410000025698.a	ENSGT00940000153433.B.a.b	ENSGT00940000158456	ENSGT00940000165654	ENSGT00940000153881.a	ENSGT00940000155605.a.a	ENSGT00940000155605.a.b	ENSGT00390000004700.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056 #22
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	137			ENSGT00410000025698.a	ENSGT00940000153433.B.a.b	ENSGT00940000170735	ENSGT00940000158456	ENSGT00940000165654	ENSGT00940000153881.a	ENSGT00940000155605.a.a	ENSGT00940000155605.a.b	ENSGT00390000004700.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00390000010056.a #22	ENSGT00390000017953.B	ENSGT00940000156546.`b.b	ENSGT00940000160590	ENSGT00940000165019	ENSGT00940000156992.f	ENSGT00940000156766	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861.b	ENSGT00980000199001	ENSGT01030000235230	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799	ENSGT00940000178689
Clupeocephala	ANCESTRAL SPECIES	21					ENSGT00390000017067	ENSGT00940000157219.f	ENSGT00390000008041.A	ENSGT00390000011270	ENSGT00940000153433.B.a.b	ENSGT00940000170735	ENSGT00940000158456	ENSGT00940000165654	ENSGT00940000153881.a	ENSGT00940000155605.a.b	ENSGT00390000004700.b	ENSGT00390000010056.a #22	ENSGT00390000017953.B	ENSGT00940000156546.`b.b	ENSGT00940000160590	ENSGT00940000165019	ENSGT00940000156992.f	ENSGT00940000156766	ENSGT00950000183142.a.b.a.b	ENSGT00980000199001	ENSGT01030000235230	ENSGT00940000178689	ENSGT00390000018900	ENSGT00950000182843.a.a.a.b.a.a.b	ENSGT00940000156852.c	ENSGT00390000007458	ENSGT01030000234633.A.a.a
Otomorpha	ANCESTRAL SPECIES	48					ENSGT00940000155936.a.a	ENSGT00390000017067	ENSGT00940000157219.f	ENSGT00390000008041.A	ENSGT00390000011270	ENSGT00940000153433.B.a.b	ENSGT00940000158456	ENSGT00940000153881.a	ENSGT00390000004700.b	ENSGT00940000156491.a.c	ENSGT01030000234517.H.b.l #10	ENSGT00390000010056.a #22	ENSGT00390000017953.B	ENSGT00940000156546.`b.b	ENSGT00940000160590	ENSGT00940000165019	ENSGT00940000156992.f	ENSGT00940000156766	ENSGT00950000183142.a.b.a.b	ENSGT01030000235230	ENSGT00940000178689	ENSGT00390000018900	ENSGT00950000182843.a.a.a.b.a.a.b	ENSGT00940000156852.c	ENSGT00390000007458	ENSGT01030000234633.A.a.a	ENSGT00950000183172.C
Otophysi	ANCESTRAL SPECIES	113												ENSGT00940000171352	ENSGT00390000004700.b	ENSGT00940000156491.a.c	ENSGT01030000234517.H.b.l #10	ENSGT00390000010056.a #22	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000158401	ENSGT00730000111244.a.b	ENSGT00940000157477	ENSGT01050000244948.c.b.a.a.a.e	ENSGT01050000244948.c.b.a.a.a.f	ENSGT00510000047616.a.b	ENSGT00940000166222.h.a	ENSGT00390000010872
Characiphysae	ANCESTRAL SPECIES	4	ENSGT00940000159561	ENSGT00390000011854	ENSGT00530000064222.b	ENSGT00940000165169.b.a	ENSGT00950000183181.B.a	ENSGT00390000012397	ENSGT00940000162596	ENSGT00940000160102	ENSGT00940000156159	ENSGT00550000074912	ENSGT00390000017953.B	ENSGT00940000171352	ENSGT00390000004700.b	ENSGT00940000156491.a.c	ENSGT01030000234517.H.b.l #10	ENSGT00390000010056.a #22	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000158401	ENSGT00730000111244.a.b	ENSGT00940000157477	ENSGT00950000182998.B	ENSGT01010000222336.a.a.a.a.b	ENSGT00940000157120.c	ENSGT00940000158275	ENSGT00950000182808.a.a.b.a.c
Characiphysae_b	ANCESTRAL SPECIES	13	ENSGT00940000159561	ENSGT00390000011854	ENSGT00530000064222.b	ENSGT00940000165169.b.a	ENSGT00950000183181.B.a	ENSGT00390000012397	ENSGT00940000162596	ENSGT00940000160102	ENSGT00940000156159	ENSGT00550000074912	ENSGT00390000017953.B	ENSGT00940000171352	ENSGT00390000004700.b	ENSGT00940000156491.a.c	ENSGT01030000234517.H.b.l #10	ENSGT00390000010056.a #22	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000158401	ENSGT00730000111244.a.b	ENSGT00940000157477	ENSGT00950000182998.B	ENSGT01010000222336.a.a.a.a.b	ENSGT00940000157120.c	ENSGT00940000158275	ENSGT00950000182808.a.a.b.a.c
Characoidei	ANCESTRAL SPECIES	57	ENSGT00940000159561	ENSGT00390000011854	ENSGT00530000064222.b	ENSGT00940000165169.b.a	ENSGT00950000183181.B.a	ENSGT00390000012397	ENSGT00940000162596	ENSGT00940000160102	ENSGT00940000156159	ENSGT00550000074912	ENSGT00390000017953.B	ENSGT00940000171352	ENSGT00390000004700.b	ENSGT00940000156491.a.c	ENSGT01030000234517.H.b.l #10	ENSGT00390000010056.a #22	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000158401	ENSGT00730000111244.a.b	ENSGT00940000157477	ENSGT00950000182998.B	ENSGT01010000222336.a.a.a.a.b.w	ENSGT00940000157120.c	ENSGT00940000158275	ENSGT00950000182808.a.a.b.a.c
Red-bellied piranha	MODERN SPECIES	64	tbpl2 (ENSPNAG00000008275)	atg14 (ENSPNAG00000000848)	fbxo34 (ENSPNAG00000008261)	lgals3b (ENSPNAG00000000827)	dact1 (ENSPNAG00000008247)	si:ch211-185a18.2 (ENSPNAG00000008234)	irf2bpl (ENSPNAG00000000727)	timm9 (ENSPNAG00000000720)	arid4a (ENSPNAG00000000710)	psma3 (ENSPNAG00000000682)	ENSPNAG00000000670	ENSPNAG00000000660	KRTCAP3 (ENSPNAG00000008078)	fzd3b (ENSPNAG00000000637)	CDC42BPA (ENSPNAG00000008060) #10	lft2 (ENSPNAG00000000608) #22	ahi1 (ENSPNAG00000008019)	slc18b1 (ENSPNAG00000007997)	TULP4 (ENSPNAG00000007981)	ENSPNAG00000007966	ENSPNAG00000006409	ENSPNAG00000000522	CCDC170 (ENSPNAG00000000476)	rmnd1 (ENSPNAG00000007803)	zbtb2a (ENSPNAG00000007788)	ENSPNAG00000000460	stx11a (ENSPNAG00000004944)	ENSPNAG00000007784	ENSPNAG00000000454	fbxo30a (ENSPNAG00000007781)	ENSPNAG00000007776
Mexicana tetra	MODERN SPECIES	24	tbpl2 (ENSAMXG00000000325)	atg14 (ENSAMXG00000000329)	fbxo34 (ENSAMXG00000035812)	lgals3b (ENSAMXG00000042316)	dact1 (ENSAMXG00000029795)	si:ch211-185a18.2 (ENSAMXG00000000355)	irf2bpl (ENSAMXG00000035489)	arid4a (ENSAMXG00000000379)	timm9 (ENSAMXG00000000418)	psma3 (ENSAMXG00000000426)	ENSAMXG00000040049	ENSAMXG00000000443	ENSAMXG00000000454	fzd3b (ENSAMXG00000000459)	CDC42BPA (ENSAMXG00000000461) #10	lft2 (ENSAMXG00000000468) #22	ahi1 (ENSAMXG00000000479)	slc18b1 (ENSAMXG00000000489)	TULP4 (ENSAMXG00000000495)	ENSAMXG00000000501	ENSAMXG00000043596	ENSAMXG00000000506	CCDC170 (ENSAMXG00000000516)	rmnd1 (ENSAMXG00000000526)	zbtb2a (ENSAMXG00000039547)	ENSAMXG00000039559	stx11a (ENSAMXG00000025382)	ENSAMXG00000037969	ENSAMXG00000000543	fbxo30a (ENSAMXG00000000546)	SHPRH (ENSAMXG00000000549)
Electric eel	MODERN SPECIES	177	ZBTB48 (ENSEEEG00000019516)	NOL9 (ENSEEEG00000019514)	galnt6 (ENSEEEG00000019503)	zgc:158263 (ENSEEEG00000019501)	tmem269 (ENSEEEG00000019484)	irf2bpl (ENSEEEG00000019483)	ENSEEEG00000019481	arid4a (ENSEEEG00000019476)	psma3 (ENSEEEG00000019468)	ENSEEEG00000019460	ENSEEEG00000019458	KRTCAP3 (ENSEEEG00000019455)	ENSEEEG00000019454	fzd3b (ENSEEEG00000019453)	CDC42BPA (ENSEEEG00000019451) #10	lft2 (ENSEEEG00000019450) #22	ahi1 (ENSEEEG00000019449)
Channel catfish	MODERN SPECIES	28	tbpl2 (ENSIPUG00000001811)	atg14 (ENSIPUG00000001820)	fbxo34 (ENSIPUG00000001840)	lgals3 (ENSIPUG00000001850)	dact1 (ENSIPUG00000001860)	si:ch211-185a18.2 (ENSIPUG00000001880)	timm9 (ENSIPUG00000001961)	arid4a (ENSIPUG00000001971)	psma3 (ENSIPUG00000002025)	ENSIPUG00000002072	ENSIPUG00000002087	ENSIPUG00000002098	KRTCAP3 (ENSIPUG00000002138)	fzd3b (ENSIPUG00000002151)	cdc42bpa (ENSIPUG00000002186) #10	lft2 (ENSIPUG00000002384) #22	ahi1 (ENSIPUG00000002400)	slc18b1 (ENSIPUG00000002449)	tulp4 (ENSIPUG00000002465)	myct1 (ENSIPUG00000002522)	ENSIPUG00000002546	ENSIPUG00000002743	rmnd1 (ENSIPUG00000002797)	ENSIPUG00000002821	stx11a (ENSIPUG00000002832)	ENSIPUG00000002842	ENSIPUG00000002848	fbxo30 (ENSIPUG00000002857)	ENSIPUG00000002863	SHPRH (ENSIPUG00000002900)	grm1 (ENSIPUG00000003028)
Cyprinoidei	ANCESTRAL SPECIES	24	ENSGT00940000158745	ENSGT00940000158051	ENSGT00810000125473.B	ENSGT00940000158045.b	ENSGT01020000230346.C.q.b	ENSGT00510000050935.b	ENSGT00510000050935.a	ENSGT00940000160188	ENSGT00390000014797	ENSGT00940000175884	ENSGT00940000154430.c.b	ENSGT00940000171352	ENSGT00390000004700.b	ENSGT00940000156491.a.c	ENSGT01030000234517.H.b.l #10	ENSGT00390000010056.a #22	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000158401.h	ENSGT00730000111244.a.b	ENSGT00940000157477	ENSGT01050000244948.c.b.a.a.a.e	ENSGT01050000244948.c.b.a.a.a.f	ENSGT00510000047616.a.b	ENSGT00730000111244.a.a	ENSGT01050000244948.c.b.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	42	ENSGT00940000155704.jb	ENSGT00940000158745.k.b	ENSGT00940000158051.d	ENSGT00810000125473.B.f	ENSGT00940000158045.b.c	ENSGT01000000220214	ENSGT00510000050935.a.b.a.b	ENSGT00510000050935.a.a.b	ENSGT00940000160188.f	ENSGT00390000014797.l	ENSGT00940000175884	ENSGT00940000171352.e	ENSGT00390000004700.b.d	ENSGT00940000156491.a.c.a.b	ENSGT01030000234517.H.b.l.b #10	ENSGT00390000010056.a.a #22	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.b.a.b.a.a.a.a.b.a.b	ENSGT00940000156509.i	ENSGT00940000156674.i.b	ENSGT00940000155913.c.b	ENSGT00390000011642.f.a	ENSGT00940000154481.a.a.k.b	ENSGT00390000013337.b	ENSGT00940000158401.h.c.a	ENSGT00730000111244.a.a.a	ENSGT01050000244948.c.b.b.g	ENSGT00990000210035	ENSGT00730000111244.a.a.b	ENSGT01050000244948.c.b.b.h	ENSGT00940000153467.a.a.gc	ENSGT00950000183204.b.b.b.e
Goldfish	MODERN SPECIES	8	zranb1b (ENSCARG00000038942)	psmc1a (ENSCARG00000039024)	ENSCARG00000039498	nkl.2 (ENSCARG00000039502)	nkl.2 (ENSCARG00000039519)	ENSCARG00000039524	ENSCARG00000039532	ENSCARG00000039539	ENSCARG00000039559	ENSCARG00000039568	EDRF1 (ENSCARG00000039593)	ctbp2a (ENSCARG00000039685)	ENSCARG00000040000	fzd3b (ENSCARG00000040029)	ENSCARG00000040915 #10	lft2 (ENSCARG00000059633) #22	ENSCARG00000059639	ahi1 (ENSCARG00000059659)	slc18b1 (ENSCARG00000059687)	TULP4 (ENSCARG00000059874)	ENSCARG00000060470	ENSCARG00000062776	rmnd1 (ENSCARG00000062793)	ENSCARG00000062958	stx11a (ENSCARG00000062964)	fbxo30a (ENSCARG00000062981)	KLHL10 (ENSCARG00000062999)	GRM1 (ENSCARG00000063030)	RAB32 (ENSCARG00000063276)	STXBP5 (ENSCARG00000063553)	SAMD5 (ENSCARG00000065633)
Cyprininae_a	ANCESTRAL SPECIES	108	ENSGT00940000158051.d	ENSGT00810000125473.B.f	ENSGT00940000158045.b.c	ENSGT01020000230346.C.q.b.b	ENSGT00510000050935.b.a.a.a	ENSGT01000000220214	ENSGT00510000050935.a.b.a.b	ENSGT00510000050935.a.a.b	ENSGT00940000160188.f	ENSGT00390000014797.l	ENSGT00940000175884	ENSGT00940000171352.e	ENSGT00390000004700.b.d	ENSGT00940000156491.a.c.a.b	ENSGT01030000234517.H.b.l.b #10	ENSGT00390000010056.a.a #22	ENSGT00940000156509.i	ENSGT00940000156674.i.b	ENSGT00940000155913.c.b	ENSGT00390000011642.f.a	ENSGT00940000154481.a.a.k.b	ENSGT00390000013337.b	ENSGT00940000158401.h.c.a	ENSGT00730000111244.a.a.a	ENSGT01050000244948.c.b.b.g	ENSGT00940000153467.a.a.gc.a	ENSGT00950000183204.b.b.b.e	ENSGT00940000154664.h.a.b	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.b.a.b.a.a.a.a.a	ENSGT01030000234595.A.b.a.a.a	ENSGT00940000162477.d.c
Common carp reference	MODERN SPECIES	30	zranb1b (ENSCCRG00000025422)	psmc1a (ENSCCRG00000025380)	nkl.2 (ENSCCRG00000075616)	ENSCCRG00000036841	ENSCCRG00000069426	ENSCCRG00000074338	ENSCCRG00000035978	nkl.2 (ENSCCRG00000025414)	ENSCCRG00000057207	ENSCCRG00000005827	tex36 (ENSCCRG00000039127)	ENSCCRG00000063832	ENSCCRG00000005871	fzd3b (ENSCCRG00000029980)	ENSCCRG00000005981 #10	lft2 (ENSCCRG00000068825) #22	ahi1 (ENSCCRG00000041268)	slc18b1 (ENSCCRG00000001494)	ENSCCRG00000060005	ENSCCRG00000008370	ENSCCRG00000008344	CCDC170 (ENSCCRG00000008363)	rmnd1 (ENSCCRG00000008300)	zbtb2a (ENSCCRG00000067105)	ENSCCRG00000066398	stx11a (ENSCCRG00000008284)	ENSCCRG00000008274	fbxo30a (ENSCCRG00000058434)	ENSCCRG00000007810	ENSCCRG00000028999	ENSCCRG00000007471
Golden-line barbel	MODERN SPECIES	83	NPAS3 (ENSSGRG00000049055)	ENSSGRG00000049054	zranb1b (ENSSGRG00000048996)	psmc1a (ENSSGRG00000048815)	nkl.2 (ENSSGRG00000048813)	ENSSGRG00000048812	ENSSGRG00000048811	ENSSGRG00000048810	tonsl (ENSSGRG00000048809)	EDRF1 (ENSSGRG00000048764)	tex36 (ENSSGRG00000048763)	ENSSGRG00000048762	ENSSGRG00000048761	fzd3b (ENSSGRG00000048760)	ENSSGRG00000048747 #10	lft2 (ENSSGRG00000048740) #22	ahi1 (ENSSGRG00000048726)	TULP4 (ENSSGRG00000048655)	ENSSGRG00000048651	rmnd1 (ENSSGRG00000048616)	zbtb2a (ENSSGRG00000048613)	ENSSGRG00000048610	stx11a (ENSSGRG00000048609)	ENSSGRG00000048607	ENSSGRG00000048606	fbxo30a (ENSSGRG00000048605)	ENSSGRG00000048603	KLHL10 (ENSSGRG00000048590)	GRM1 (ENSSGRG00000048589)	RAB32 (ENSSGRG00000048588)	RAB32 (ENSSGRG00000048586)
Cyprininae	ANCESTRAL SPECIES	626									ENSGT00510000050935.a.a.a	ENSGT00940000160188.e	ENSGT00390000014797.k.b	ENSGT00940000154430.c.b	ENSGT00390000004700.b.c	ENSGT00940000156491.a.c.a.a	ENSGT01030000234517.H.b.l.a #10	ENSGT00390000010056.a.b #22	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.b.a.b.a.a.b.b	ENSGT00940000156509.j	ENSGT00940000156674.j	ENSGT00940000156674.i.a	ENSGT00940000155913.c.a	ENSGT00390000011642.f.b	ENSGT00940000154481.a.a.k.a
Cyprininae_a	ANCESTRAL SPECIES	24	ENSGT00390000002766.b.b	ENSGT00940000158745.k.a	ENSGT00940000158051.c	ENSGT00810000125473.B.e	ENSGT00940000158045.b.d	ENSGT01020000230346.C.q.b.a	ENSGT00510000050935.b.b	ENSGT00510000050935.a.b.b	ENSGT00510000050935.a.a.a	ENSGT00940000160188.e	ENSGT00390000014797.k.b	ENSGT00940000154430.c.b	ENSGT00390000004700.b.c	ENSGT00940000156491.a.c.a.a	ENSGT01030000234517.H.b.l.a #10	ENSGT00390000010056.a.b #22	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.b.a.b.a.a.b.b	ENSGT00940000156509.j	ENSGT00940000156674.j	ENSGT00940000156674.i.a	ENSGT00940000155913.c.a	ENSGT00390000011642.f.b	ENSGT00940000154481.a.a.k.a
Golden-line barbel	MODERN SPECIES	117	egln3 (ENSSGRG00000030384)	NPAS3 (ENSSGRG00000030383)	NPAS3 (ENSSGRG00000030382)	ENSSGRG00000030380	zranb1b (ENSSGRG00000030336)	psmc1a (ENSSGRG00000030186)	nkl.2 (ENSSGRG00000030175)	ENSSGRG00000030174	ENSSGRG00000030173	tonsl (ENSSGRG00000030106)	ctbp2a (ENSSGRG00000029873)	ENSSGRG00000029866	ENSSGRG00000029864	fzd3b (ENSSGRG00000029863)	CDC42BPA (ENSSGRG00000024275) #10	lft2 (ENSSGRG00000024181) #22	ahi1 (ENSSGRG00000024180)	slc18b1 (ENSSGRG00000024178)	TULP4 (ENSSGRG00000024177)	ENSSGRG00000024176	ENSSGRG00000024172
Common carp reference	MODERN SPECIES	4	AKAP6 (ENSCCRG00000025431)	zranb1b (ENSCCRG00000036676)	ENSCCRG00000062747	ENSCCRG00000060192	nkl.2 (ENSCCRG00000028988)	ENSCCRG00000073254	ENSCCRG00000028984	ENSCCRG00000067120	ENSCCRG00000074393	tonsl (ENSCCRG00000036565)	ENSCCRG00000036587	ctbp2a (ENSCCRG00000067035)	ENSCCRG00000069331	fzd3b (ENSCCRG00000005883)	ENSCCRG00000008877 #10	lft2 (ENSCCRG00000077178) #22	ENSCCRG00000075118	ahi1 (ENSCCRG00000009378)	slc18b1 (ENSCCRG00000009370)	ENSCCRG00000009332	ENSCCRG00000009327	ENSCCRG00000007993	ENSCCRG00000018231	rmnd1 (ENSCCRG00000017837)	zbtb2a (ENSCCRG00000081653)	ENSCCRG00000052950	stx11a (ENSCCRG00000017820)	ENSCCRG00000068056	fbxo30a (ENSCCRG00000072634)	SHPRH (ENSCCRG00000006891)	ENSCCRG00000082070
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	36	tmx4 (ENSCARG00000046176)	hao1 (ENSCARG00000046129)	AKAP6 (ENSCARG00000045574)	zranb1b (ENSCARG00000045457)	nkl.2 (ENSCARG00000045430)	ENSCARG00000045411	ENSCARG00000045398	ENSCARG00000045319	ENSCARG00000045266	tonsl (ENSCARG00000044851)	EDRF1 (ENSCARG00000044779)	ctbp2a (ENSCARG00000043816)	ENSCARG00000043701	fzd3b (ENSCARG00000043671)	ENSCARG00000023967 #10	lft2 (ENSCARG00000023312) #22	slc18b1 (ENSCARG00000023119)	TULP4 (ENSCARG00000022820)	ENSCARG00000022797	rmnd1 (ENSCARG00000019817)	zbtb2a (ENSCARG00000019804)	stx11a (ENSCARG00000019801)	fbxo30a (ENSCARG00000019797)	SHPRH (ENSCARG00000019753)	KLHL10 (ENSCARG00000019739)	ENSCARG00000019733	ENSCARG00000019727	GRM1 (ENSCARG00000019638)	ENSCARG00000019626	STXBP5 (ENSCARG00000017065)	SAMD5 (ENSCARG00000016949)
Goldfish	MODERN SPECIES	1039															ENSCARG00000060182 #10	ENSCARG00000060235 #22	slc18b1 (ENSCARG00000060259)	TULP4 (ENSCARG00000060395)	ENSCARG00000060506	ENSCARG00000060582
Zebrafish	MODERN SPECIES	8	NPAS3 (ENSDARG00000109820)	AKAP6 (ENSDARG00000077295)	zranb1b (ENSDARG00000063190)	psmc1a (ENSDARG00000030537)	nkl.2 (ENSDARG00000058673)	nkl.3 (ENSDARG00000089202)	nkl.4 (ENSDARG00000044023)	tonsl (ENSDARG00000071294)	EDRF1 (ENSDARG00000019834)	tex36 (ENSDARG00000097920)	ctbp2a (ENSDARG00000044062)	ENSDARG00000090072	ENSDARG00000103562	fzd3b (ENSDARG00000058692)	CDC42BPA (ENSDARG00000104283) #10	lft2 (ENSDARG00000044059) #22	ENSDARG00000086418	ENSDARG00000086256	ahi1 (ENSDARG00000044056)	slc18b1 (ENSDARG00000044047)	TULP4 (ENSDARG00000063056)	ENSDARG00000088546	ENSDARG00000063068	ENSDARG00000016161	rmnd1 (ENSDARG00000027465)	zbtb2a (ENSDARG00000044038)	ENSDARG00000091792	stx11a (ENSDARG00000044039)	fbxo30a (ENSDARG00000058561)	ENSDARG00000087784	SHPRH (ENSDARG00000075884)
Clupeiformes	ANCESTRAL SPECIES	6	ENSGT00390000018900	ENSGT00940000163104	ENSGT00390000004799	ENSGT00390000005861.b	ENSGT00940000155936.a.a	ENSGT00390000017067	ENSGT00940000157219.f	ENSGT00390000008041.A	ENSGT00390000011270	ENSGT00940000153433.B.a.b	ENSGT00940000158456	ENSGT00940000153881.a	ENSGT00390000004700.b	ENSGT00940000156491.a.c	ENSGT01030000234517.H.b.l #10	ENSGT00390000010056.a #22	ENSGT00390000017953.B	ENSGT00940000156546.`b.b.a	ENSGT00940000160590	ENSGT00940000165019	ENSGT00940000156992.f	ENSGT00940000156766	ENSGT00950000183142.a.b.a.b	ENSGT00940000156829	ENSGT00390000008402	ENSGT00940000157776.c.a	ENSGT00950000183147.A.a.g.a	ENSGT00940000158910	ENSGT00390000003581	ENSGT00940000157441.e	ENSGT00390000003855.b.e.a
Atlantic herring	MODERN SPECIES	5	sccpdha.1 (ENSCHAG00000005821)	ENSCHAG00000006578	ENSCHAG00000006592	lpin1a (ENSCHAG00000006633)	itsn2b (ENSCHAG00000007275)	pfn4 (ENSCHAG00000008901)	ENSCHAG00000008971	spata17 (ENSCHAG00000009222)	esrrga (ENSCHAG00000009230)	USH2A (ENSCHAG00000009254)	KCTD3 (ENSCHAG00000010109)	ENSCHAG00000011468	fzd3b (ENSCHAG00000011478)	ENSCHAG00000011584 #10	ENSCHAG00000015563	lft2 (ENSCHAG00000015578) #22	ENSCHAG00000015583	HNRNPU (ENSCHAG00000015653)	EFCAB2 (ENSCHAG00000017495)	ENSCHAG00000017604	KIF26B (ENSCHAG00000017646)	smyd3 (ENSCHAG00000017656)	ENSCHAG00000017710	tfb2m (ENSCHAG00000017853)	pomt2 (ENSCHAG00000017895)	lin52 (ENSCHAG00000018858)	ENSCHAG00000018908	vsx2 (ENSCHAG00000018950)	ENSCHAG00000018965	ENSCHAG00000018979	DLL4 (ENSCHAG00000018994)
Euteleosteomorpha	ANCESTRAL SPECIES	239																ENSGT00390000010056.a #22	ENSGT00390000017953.B	ENSGT00940000156546.`b.b	ENSGT00940000160590	ENSGT00940000165019	ENSGT00940000156992.f	ENSGT00940000156766	ENSGT00390000005861.b	ENSGT00950000183142.a.b.a.b	ENSGT00390000018900	ENSGT00940000178689	ENSGT00940000157219.f	ENSGT00390000008041.A	ENSGT00390000011270	ENSGT00940000153433.B.a.b	ENSGT00940000170735
Protacanthopterygii	ANCESTRAL SPECIES	72	ENSGT01030000234564.a.a.a.a.b.b	ENSGT00940000155734	ENSGT00940000156714.a	ENSGT01030000234564.a.a.a.a.b.a	ENSGT00940000155623	ENSGT00390000003990	ENSGT00390000008069	ENSGT00940000155443.c	ENSGT01090000260040.b.b.b.a.m.a.a	ENSGT00940000157612	ENSGT00940000155982.e.a	ENSGT00940000157136.a	ENSGT00950000183149.C.a	ENSGT00940000155500.e	ENSGT00940000154928.c.a.a	ENSGT00390000010056.a #22	ENSGT00390000017953.B	ENSGT00940000156546.`b.b	ENSGT00940000160590	ENSGT00940000156992.f	ENSGT00940000156766	ENSGT00980000199001	ENSGT00390000005861.b	ENSGT00950000183142.a.b.a.b	ENSGT00390000018900	ENSGT00940000163104	ENSGT00940000157219.f	ENSGT00390000008041.A	ENSGT00390000011270	ENSGT00940000153433.B.a.b	ENSGT00940000158456
Salmoninae	ANCESTRAL SPECIES	234	ENSGT00940000157701.l.b.a.b	ENSGT00940000156464.mb.b.a	ENSGT00940000156714.a.c	ENSGT01030000234564.a.a.a.a.b.a.b	ENSGT00940000155623.ib.a.a	ENSGT00390000003990	ENSGT00390000008069	ENSGT00940000155443.c.c	ENSGT01090000260040.b.b.b.a.m.a.a.c	ENSGT00940000157612.a.a	ENSGT00940000155982.e.a.d	ENSGT00940000157136.a.c	ENSGT00950000183149.C.a.c	ENSGT00940000155500.e.d	ENSGT00940000154928.c.a.a.c	ENSGT00390000010056.a #22	ENSGT00390000017953.B.d	ENSGT00940000165019.e	ENSGT00940000156992.f.c	ENSGT00940000156766	ENSGT00980000199001	ENSGT00390000004799.cc.b
Salmoninae_a	ANCESTRAL SPECIES	36	ENSGT00940000157701.l.b.a.b	ENSGT00940000156464.mb.b.a	ENSGT00940000156714.a.c	ENSGT01030000234564.a.a.a.a.b.a.b	ENSGT00940000155623.ib.a.a	ENSGT00390000003990	ENSGT00390000008069	ENSGT00940000155443.c.c	ENSGT01090000260040.b.b.b.a.m.a.a.c	ENSGT00940000157612.a.a	ENSGT00940000155982.e.a.d	ENSGT00940000157136.a.c	ENSGT00950000183149.C.a.c	ENSGT00940000155500.e.d	ENSGT00940000154928.c.a.a.c	ENSGT00390000010056.a #22	ENSGT00390000017953.B.d	ENSGT00940000165019.e	ENSGT00940000156992.f.c	ENSGT00940000156766	ENSGT00390000005861.b.c	ENSGT00390000004799.cc.b	ENSGT00390000018900.r	ENSGT00940000163104	ENSGT00940000157219.f.c	ENSGT00390000008041.A.c	ENSGT00390000011270	ENSGT00940000153433.B.a.b.g.b	ENSGT00940000153881.a.e	ENSGT00940000155605.a.b.a.a	ENSGT00390000004700.b.f
Salmo	ANCESTRAL SPECIES	11	ENSGT00940000157701.l.a	ENSGT00940000156464.mb.b.a	ENSGT00940000156714.a.c	ENSGT01030000234564.a.a.a.a.b.a.b	ENSGT00940000155623.ib.a.a	ENSGT00390000003990	ENSGT00390000008069	ENSGT00940000155443.c.c	ENSGT01090000260040.b.b.b.a.m.a.a.c	ENSGT00940000157612.a.a	ENSGT00940000159405.c	ENSGT00940000157136.a.c	ENSGT00950000183149.C.a.c	ENSGT00940000155500.e.d	ENSGT00940000154928.c.a.a.c	ENSGT00390000010056.a #22	ENSGT00390000017953.B.d	ENSGT00940000156992.f.c	ENSGT00940000156766	ENSGT00390000005861.b.c	ENSGT00390000004799.cc.b	ENSGT00390000018900.r	ENSGT00940000163104	ENSGT00940000157219.f.c	ENSGT00390000008041.A.c	ENSGT00390000011270	ENSGT00940000153433.B.a.b.g.b	ENSGT00940000153881.a.e	ENSGT00940000155605.a.b.a.a	ENSGT00390000004700.b.f	ENSGT00940000156491.b.b
River trout	MODERN SPECIES	17	rnf144aa (ENSSTUG00000032541)	id2a (ENSSTUG00000032529)	KIDINS220 (ENSSTUG00000032081)	MBOAT2 (ENSSTUG00000031347)	asap2a (ENSSTUG00000029463)	itgb1bp1 (ENSSTUG00000029391)	iah1 (ENSSTUG00000029379)	adam17a (ENSSTUG00000025308)	ENSSTUG00000025080	grhl1 (ENSSTUG00000024466)	ENSSTUG00000024428	znf395a (ENSSTUG00000024417)	ENSSTUG00000024409	KIF13B (ENSSTUG00000020959)	hmbox1a (ENSSTUG00000020701)	ENSSTUG00000020671 #22	ENSSTUG00000020638	KIF26B (ENSSTUG00000020563)	smyd3 (ENSSTUG00000020480)	ENSSTUG00000020467	SCCPDH (ENSSTUG00000020342)	AHCTF1 (ENSSTUG00000020104)	ENSSTUG00000020031	lpin1a (ENSSTUG00000019820)	ENSSTUG00000019073	ENSSTUG00000019005	spata17 (ENSSTUG00000018983)	ENSSTUG00000018978	ENSSTUG00000018976	KCTD3 (ENSSTUG00000018651)	NRBP1 (ENSSTUG00000017785)
Atlantic salmon	MODERN SPECIES	28	KIDINS220 (ENSSSAG00000008076)	ENSSSAG00000093491	MBOAT2 (ENSSSAG00000118144)	asap2a (ENSSSAG00000015430)	itgb1bp1 (ENSSSAG00000044455)	iah1 (ENSSSAG00000044498)	adam17a (ENSSSAG00000044555)	1433b (ENSSSAG00000045629)	GRHL1 (ENSSSAG00000045675)	ENSSSAG00000046216	znf395a (ENSSSAG00000046223)	ENSSSAG00000114233	ENSSSAG00000046229	ENSSSAG00000046425	hmbox1a (ENSSSAG00000107279)	ENSSSAG00000098966 #22	ENSSSAG00000054082	ENSSSAG00000055146	smyd3 (ENSSSAG00000055172)	ENSSSAG00000122290	scpdh (ENSSSAG00000055195)	ENSSSAG00000055265	ENSSSAG00000057210	lpin1a (ENSSSAG00000057291)	ENSSSAG00000058771	spata17 (ENSSSAG00000060462)	esrrga (ENSSSAG00000115275)	ENSSSAG00000060769	ENSSSAG00000062750	ENSSSAG00000086547	ENSSSAG00000062929
Oncorhynchus	ANCESTRAL SPECIES	36	ENSGT00940000156464.mb.b.a	ENSGT00940000156714.a.c	ENSGT01030000234564.a.a.a.a.b.a.b	ENSGT00940000155623.ib.a.a	ENSGT00390000003990	ENSGT00390000008069	ENSGT00940000155443.c.c	ENSGT01090000260040.b.b.b.a.m.a.a.c	ENSGT00940000157612.a.a	ENSGT00940000155982.e.a.d	ENSGT00940000159405.c	ENSGT00940000157136.a.c	ENSGT00950000183149.C.a.c	ENSGT00940000155500.e.d	ENSGT00940000154928.c.a.a.c	ENSGT00390000010056.a #22	ENSGT00390000017953.B.d	ENSGT00940000165019.e	ENSGT00940000156992.f.c	ENSGT00940000156766	ENSGT00390000005861.b.c	ENSGT00390000004799.cc.b	ENSGT00390000018900.r	ENSGT00940000163104	ENSGT00940000157219.f.c	ENSGT00390000008041.A.c	ENSGT00390000011270	ENSGT00940000170735	ENSGT00940000153881.a.e	ENSGT00940000155605.a.b.a.a	ENSGT00390000004700.b.f
Rainbow trout	MODERN SPECIES	17	asap2a (ENSOMYG00000025517)	ENSOMYG00000039364	itgb1bp1 (ENSOMYG00000028983)	iah1 (ENSOMYG00000029015)	adam17a (ENSOMYG00000029732)	ENSOMYG00000030603	ENSOMYG00000057253	ENSOMYG00000030683	ENSOMYG00000030928	znf395a (ENSOMYG00000030940)	ENSOMYG00000066884	ENSOMYG00000031233	ENSOMYG00000032113	hmbox1a (ENSOMYG00000032119)	ENSOMYG00000057324	ENSOMYG00000032131 #22	ENSOMYG00000032141	ENSOMYG00000032210	ENSOMYG00000032216	ENSOMYG00000032245	ENSOMYG00000032506	lpin1a (ENSOMYG00000033049)	ENSOMYG00000033124	spata17 (ENSOMYG00000033179)	ENSOMYG00000052199	esrrga (ENSOMYG00000071373)	ENSOMYG00000067341	ENSOMYG00000033271	ENSOMYG00000033377	ENSOMYG00000014639	ENSOMYG00000033451
Oncorhynchus_a	ANCESTRAL SPECIES	33	ENSGT00940000157701.l.b.a.b	ENSGT00940000156464.mb.b.a	ENSGT00940000156714.a.c	ENSGT01030000234564.a.a.a.a.b.a.b	ENSGT00940000155623.ib.a.a	ENSGT00390000003990	ENSGT00390000008069	ENSGT00940000155443.c.c	ENSGT01090000260040.b.b.b.a.m.a.a.c	ENSGT00940000157612.a.a	ENSGT00940000155982.e.a.d	ENSGT00940000157136.a.c	ENSGT00950000183149.C.a.c	ENSGT00940000155500.e.d	ENSGT00940000154928.c.a.a.c	ENSGT00390000010056.a #22	ENSGT00390000017953.B.d	ENSGT00940000165019.e	ENSGT00940000156992.f.c	ENSGT00940000156766	ENSGT00390000005861.b.c	ENSGT00390000004799.cc.b	ENSGT00390000018900.r	ENSGT00940000163104	ENSGT00940000157219.f.c	ENSGT00390000008041.A.c	ENSGT00390000011270	ENSGT00940000170735	ENSGT00940000153881.a.e	ENSGT00940000155605.a.b.a.a	ENSGT00390000004700.b.f
Coho salmon	MODERN SPECIES	5	rnf144aa (ENSOKIG00005005477)	id2a (ENSOKIG00005005464)	KIDINS220 (ENSOKIG00005005405)	MBOAT2 (ENSOKIG00005004613)	asap2a (ENSOKIG00005004401)	itgb1bp1 (ENSOKIG00005049877)	iah1 (ENSOKIG00005049874)	adam17a (ENSOKIG00005049208)	ywhaqb (ENSOKIG00005049092)	GRHL1 (ENSOKIG00005049051)	ENSOKIG00005049033	znf395a (ENSOKIG00005049026)	ENSOKIG00005049022	KIF13B (ENSOKIG00005048648)	hmbox1a (ENSOKIG00005048605)	ENSOKIG00005048596 #22	ENSOKIG00005048592	smyd3 (ENSOKIG00005048583)	ENSOKIG00005048578	SCCPDH (ENSOKIG00005048541)	ENSOKIG00005048526	ENSOKIG00005048370	ENSOKIG00005048346	lpin1a (ENSOKIG00005048336)	ENSOKIG00005048292	spata17 (ENSOKIG00005048275)	ENSOKIG00005048268	ENSOKIG00005048260	KCTD3 (ENSOKIG00005048138)	ENSOKIG00005048118	NRBP1 (ENSOKIG00005048070)
Chinook salmon	MODERN SPECIES	32	id2a (ENSOTSG00005022922)	KIDINS220 (ENSOTSG00005022924)	MBOAT2 (ENSOTSG00005023056)	asap2a (ENSOTSG00005023061)	itgb1bp1 (ENSOTSG00005023578)	iah1 (ENSOTSG00005023586)	adam17a (ENSOTSG00005023608)	ywhaqb (ENSOTSG00005024325)	grhl1 (ENSOTSG00005024345)	klf11b (ENSOTSG00005025136)	znf395a (ENSOTSG00005025139)	ENSOTSG00005025142	KIF13B (ENSOTSG00005025169)	ENSOTSG00005027420	hmbox1a (ENSOTSG00005027422)	ENSOTSG00005027426 #22	ENSOTSG00005027428	ENSOTSG00005027431	KIF26B (ENSOTSG00005027433)	smyd3 (ENSOTSG00005027435)	SCCPDH (ENSOTSG00005004134)	ENSOTSG00005004326	ENSOTSG00005004338	ENSOTSG00005004406	lpin1a (ENSOTSG00005004410)	ENSOTSG00005004415	spata17 (ENSOTSG00005004417)	ENSOTSG00005004421	NRBP1 (ENSOTSG00005005319)	ENSOTSG00005005531	ENSOTSG00005005532
Huchen	MODERN SPECIES	809						ITGB1BP1 (ENSHHUG00000047153)	iah1 (ENSHHUG00000047165)	adam17a (ENSHHUG00000047178)	ywhaqb (ENSHHUG00000047266)	grhl1 (ENSHHUG00000047306)	klf11b (ENSHHUG00000047332)	znf395a (ENSHHUG00000047336)	ENSHHUG00000047341	KIF13B (ENSHHUG00000047346)	hmbox1a (ENSHHUG00000047765)	ENSHHUG00000047768 #22	ENSHHUG00000047775	ENSHHUG00000047785
Northern pike	MODERN SPECIES	14	KIDINS220 (ENSELUG00000013043)	MBOAT2 (ENSELUG00000012971)	ENSELUG00000032775	ENSELUG00000032565	asap2a (ENSELUG00000012839)	itgb1bp1 (ENSELUG00000024673)	iah1 (ENSELUG00000012701)	adam17a (ENSELUG00000012677)	ywhaqb (ENSELUG00000012647)	grhl1 (ENSELUG00000012598)	klf11b (ENSELUG00000012527)	znf395a (ENSELUG00000012502)	ENSELUG00000012441	KIF13B (ENSELUG00000012362)	hmbox1a (ENSELUG00000012058)	ENSELUG00000012028 #22	ENSELUG00000012002	HNRNPU (ENSELUG00000011966)	EFCAB2 (ENSELUG00000001169)	KIF26B (ENSELUG00000019398)	ENSELUG00000032455	smyd3 (ENSELUG00000019343)	ENSELUG00000031203
Osteoglossiformes	ANCESTRAL SPECIES	4	ENSGT00940000155936.b.m	ENSGT00940000171406	ENSGT00520000055570.B.l	ENSGT00940000157219.e	ENSGT00390000008041.B.j	ENSGT00410000025698.a	ENSGT00940000153433.B.a.b	ENSGT00940000170735	ENSGT00940000158456	ENSGT00940000153881.a	ENSGT00940000155605.a.a.b	ENSGT00390000004700.b	ENSGT00940000156491.a.a	ENSGT01030000234517.H.b.b #10	ENSGT00390000010056.b.a #22	ENSGT00390000010056.a #22	ENSGT00390000017953.B	ENSGT00940000156546.`b.b	ENSGT00940000160590	ENSGT00940000165019	ENSGT00940000156992.f	ENSGT00940000156766	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861.b	ENSGT00390000004799	ENSGT00940000176994	ENSGT00940000163104	ENSGT00390000018900	ENSGT00390000007458	ENSGT01030000234633.A.a.a.f	ENSGT00950000183172.C
Asian bonytongue	MODERN SPECIES		efhc1 (ENSSFOG00015000342)	ENSSFOG00015000355 ##20	ENSSFOG00015029839	mrpl19 (ENSSFOG00015000393)	ITSN2 (ENSSFOG00015000415)	ENSSFOG00015000597	GNPAT (ENSSFOG00015000601)	LPIN1 (ENSSFOG00015000617)	ENSSFOG00015000663	si:ch73-21k16.4 (ENSSFOG00015000674)	esrrga (ENSSFOG00015000691)	nrbp1 (ENSSFOG00015000718)	fbxo16 (ENSSFOG00015000776)	fzd3a (ENSSFOG00015000788)	cdc42bpab (ENSSFOG00015000828) #10	ENSSFOG00015000984 #22	ENSSFOG00015031684	hnrnpub (ENSSFOG00015001124)	KIF26B (ENSSFOG00015001188)	cnstb (ENSSFOG00015001287)	snap25a (ENSSFOG00015001305)	ankef1a (ENSSFOG00015001355)	EMILIN1 (ENSSFOG00015001373)	stmn4 (ENSSFOG00015001386)	il17a/f3 (ENSSFOG00015001417)	mcm3 (ENSSFOG00015001433)	paqr8 (ENSSFOG00015001521)	pnocb (ENSSFOG00015001572)	si:ch211-63o20.7 (ENSSFOG00015001614)	elp3 (ENSSFOG00015001622)	ENSSFOG00015001678
Osteoglossocephalai	ANCESTRAL SPECIES	137				ENSGT00410000025698.a	ENSGT00940000153433.B.a.b	ENSGT00940000170735	ENSGT00940000158456	ENSGT00940000165654	ENSGT00940000153881.a	ENSGT00940000155605.a.a	ENSGT00940000155605.a.b	ENSGT00390000004700.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00390000010056.a #22	ENSGT00390000017953.B	ENSGT00940000156546.`b.b	ENSGT00940000160590	ENSGT00940000165019	ENSGT00940000156992.f	ENSGT00940000156766	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861.b	ENSGT00980000199001	ENSGT01030000235230	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	4	ENSGT00390000009415	ENSGT00940000155936.b.m	ENSGT00940000171406	ENSGT00520000055570.B.l	ENSGT00940000157219.e	ENSGT00390000008041.B.j	ENSGT00410000025698.a	ENSGT00940000153433.B.a.b	ENSGT00940000170735	ENSGT00940000158456	ENSGT00940000153881.a	ENSGT00940000155605.a.a.b	ENSGT00390000004700.b	ENSGT00940000156491.a.a	ENSGT01030000234517.H.b.b #10	ENSGT00390000010056.b.a #22	ENSGT00390000010056.a #22	ENSGT00390000017953.B	ENSGT00940000156546.`b.b	ENSGT00940000160590	ENSGT00940000165019	ENSGT00940000156992.f	ENSGT00940000156766	ENSGT00950000183142.a.b.a.b	ENSGT00390000005861.b	ENSGT00390000004799	ENSGT00940000176994	ENSGT00940000163104	ENSGT00390000018900	ENSGT00390000007458	ENSGT01030000234633.A.a.a.f
P. kingsleyae	MODERN SPECIES	333															cdc42bpab (ENSPKIG00000006313) #10	lft1 (ENSPKIG00000006839) #22	ENSPKIG00000006849	HNRNPU (ENSPKIG00000006885)	EFCAB2 (ENSPKIG00000006927)	ENSPKIG00000006949	KIF26B (ENSPKIG00000006990)	smyd3 (ENSPKIG00000007049)	tfb2m (ENSPKIG00000007071)	ENSPKIG00000007104	sccpdha.1 (ENSPKIG00000007129)	ENSPKIG00000007167	ENSPKIG00000007191	AHCTF1 (ENSPKIG00000007223)	snap25b (ENSPKIG00000007301)	khk (ENSPKIG00000007365)	EMILIN1 (ENSPKIG00000007414)
Asian bonytongue	MODERN SPECIES	6	ENSSFOG00015018084	tram2 (ENSSFOG00015018111)	ENSSFOG00015025221	gcfc2 (ENSSFOG00015018151)	ITSN2 (ENSSFOG00015018180)	lpin1a (ENSSFOG00015018301)	ENSSFOG00015018391	spata17 (ENSSFOG00015018438)	esrrga (ENSSFOG00015018472)	USH2A (ENSSFOG00015018545)	KCTD3 (ENSSFOG00015018701)	nrbp1 (ENSSFOG00015018795)	KRTCAP3 (ENSSFOG00015018828)	fzd3a (ENSSFOG00015018866)	cdc42bpab (ENSSFOG00015018896) #10	lft1 (ENSSFOG00015018966) #22	ENSSFOG00015018981	HNRNPU (ENSSFOG00015019004)	efcab2 (ENSSFOG00015026474)	KIF26B (ENSSFOG00015019068)	smyd3 (ENSSFOG00015027818)	tfb2m (ENSSFOG00015019107)	tfb2m (ENSSFOG00015019121)	ENSSFOG00015019136	sccpdha.1 (ENSSFOG00015019145)	ENSSFOG00015019185	AHCTF1 (ENSSFOG00015019216)	snap25b (ENSSFOG00015019346)	khk (ENSSFOG00015019381)	ENSSFOG00015019426	gpn1 (ENSSFOG00015019441)
Osteoglossiformes	ANCESTRAL SPECIES	126														ENSGT00940000156491.a.b	ENSGT01030000234517.H.b.a #10	ENSGT00390000010056.b.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00940000156852	ENSGT01030000234633.A.a.a.e	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917
P. kingsleyae	MODERN SPECIES	82	BCLAF1 (ENSPKIG00000023059)	MAP7 (ENSPKIG00000022970)	ppp1r14c (ENSPKIG00000022914)	iyd (ENSPKIG00000022903)	PLEKHG1 (ENSPKIG00000022866)	tcp1 (ENSPKIG00000022823)	acat2 (ENSPKIG00000022793)	wtap (ENSPKIG00000022767)	wtap (ENSPKIG00000022748)	sod2 (ENSPKIG00000022722)	FNDC1 (ENSPKIG00000022686)	OTOF (ENSPKIG00000022619)	fzd3a (ENSPKIG00000022575)	ENSPKIG00000022561	cdc42bpab (ENSPKIG00000022461) #10	lft1 (ENSPKIG00000022403) #22	ENSPKIG00000022375	hnrnpub (ENSPKIG00000022332)	KIF26B (ENSPKIG00000022242)	cnstb (ENSPKIG00000022184)	snap25a (ENSPKIG00000022134)	ankef1a (ENSPKIG00000022097)	EMILIN1 (ENSPKIG00000022077)	stmn4 (ENSPKIG00000022059)	il17a/f3 (ENSPKIG00000022047)	mcm3 (ENSPKIG00000021999)	paqr8 (ENSPKIG00000021982)	znf395b (ENSPKIG00000021950)	pnocb (ENSPKIG00000021933)	si:ch211-63o20.7 (ENSPKIG00000021912)	elp3 (ENSPKIG00000021890)
Clupeocephala	ANCESTRAL SPECIES	1	ENSGT00940000156212	ENSGT00940000161228	ENSGT00940000154603.B	ENSGT00940000161541	ENSGT00940000154603.A.f.b	ENSGT00950000183111.a.b	ENSGT00950000183111.a.a	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Otomorpha	ANCESTRAL SPECIES	64	ENSGT00940000157566	ENSGT00940000156212	ENSGT00940000161228	ENSGT00940000154603.B	ENSGT00940000154603.A.f.b	ENSGT00950000183111.a.b	ENSGT00950000183111.a.a	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a.d	ENSGT01030000234517.H.b.k #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Clupeiformes	ANCESTRAL SPECIES	274		ENSGT01030000234625.B.d.c.b	ENSGT00940000159745	ENSGT00940000154603.B.h	ENSGT00940000154603.A.f.b	ENSGT00950000183111.a.b	ENSGT00950000183111.a.a	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a.d	ENSGT01030000234517.H.b.k #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b
Atlantic herring	MODERN SPECIES	6	ENSCHAG00000004335	ENSCHAG00000004233	ENSCHAG00000004193	ENSCHAG00000004128	mep1a.2 (ENSCHAG00000003989)	mep1a.1 (ENSCHAG00000003734)	pla2g7 (ENSCHAG00000002750)	tdrd6 (ENSCHAG00000002651)	sf3b6 (ENSCHAG00000002532)	VSNL1 (ENSCHAG00000002389)	ENSCHAG00000026402	fam49a (ENSCHAG00000026381)	fbxo16 (ENSCHAG00000026367)	fzd3a (ENSCHAG00000026363)	cdc42bpab (ENSCHAG00000026335) #10	lft1 (ENSCHAG00000026327) #22	hnrnpub (ENSCHAG00000026311)	ENSCHAG00000026300	cnstb (ENSCHAG00000026297)	sccpdhb (ENSCHAG00000026292)	SNAP25 (ENSCHAG00000026280)	ankef1a (ENSCHAG00000026273)	emilin1a (ENSCHAG00000026270)	stmn4 (ENSCHAG00000026263)	ENSCHAG00000026259	mcm3 (ENSCHAG00000026249)	GPX1 (ENSCHAG00000026244)	mboat2b (ENSCHAG00000026224)	e2f6 (ENSCHAG00000026214)	ENSCHAG00000023959	slc35f6 (ENSCHAG00000023842)
Denticle herring	MODERN SPECIES	5	slbp (ENSDCDG00000035552)	ENSDCDG00000035544	ENSDCDG00000035538	ENSDCDG00000035535	pla2g7 (ENSDCDG00000035533)	tdrd6 (ENSDCDG00000035528)	sf3b6 (ENSDCDG00000035526)	vsnl1a (ENSDCDG00000035525)	ENSDCDG00000035521	ENSDCDG00000035520	fam49a (ENSDCDG00000035510)	fbxo16 (ENSDCDG00000035504)	fzd3a (ENSDCDG00000035500)	ENSDCDG00000035499	cdc42bpab (ENSDCDG00000034016) #10	lft1 (ENSDCDG00000033672) #22	hnrnpub (ENSDCDG00000033646)	ENSDCDG00000033636	ttc32 (ENSDCDG00000033629)	ENSDCDG00000033620	kcns3b (ENSDCDG00000033614)	mideasa (ENSDCDG00000033613)	ttbk2b (ENSDCDG00000033610)	churc1 (ENSDCDG00000033609)	ENSDCDG00000033322	nrbp1 (ENSDCDG00000033160)	ENSDCDG00000033140	rhag (ENSDCDG00000033067)	si:ch211-22i13.2 (ENSDCDG00000033049)	rd3 (ENSDCDG00000033048)	ENSDCDG00000033046
Otophysi	ANCESTRAL SPECIES	7	ENSGT00940000156212	ENSGT00940000161228	ENSGT00940000154603.B	ENSGT00730000113053	ENSGT00940000154603.A.f.b	ENSGT00950000183111.a.b	ENSGT00950000183111.a.a	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a.d	ENSGT01030000234517.H.b.k #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000180531	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b
Characiphysae	ANCESTRAL SPECIES	24	ENSGT00940000156212	ENSGT00940000161228.a	ENSGT00940000154603.B	ENSGT00730000113053	ENSGT00940000154603.A.f.b	ENSGT00950000183111.a.b	ENSGT00950000183111.a.a	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a.d	ENSGT01030000234517.H.b.k #10	ENSGT00390000010056.b #22	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000164927.a	ENSGT00950000183190.a.a.b.c.b
Channel catfish	MODERN SPECIES	17	nkx2.4b (ENSIPUG00000006672)	ENSIPUG00000006689	insm1a (ENSIPUG00000006693)	cfap61 (ENSIPUG00000006707)	crnkl1 (ENSIPUG00000006751)	naa20 (ENSIPUG00000006781)	cd109 (ENSIPUG00000006809)	ENSIPUG00000006882	COX7A2 (ENSIPUG00000007356)	TMEM30A (ENSIPUG00000007370)	vsnl1a (ENSIPUG00000007389)	fam49a (ENSIPUG00000007421)	fbxo16 (ENSIPUG00000007590)	FZD3 (ENSIPUG00000007603)	cdc42bpab (ENSIPUG00000007633) #10	lft1 (ENSIPUG00000007713) #22	hnrnpu (ENSIPUG00000007749)	ENSIPUG00000007794	cnstb (ENSIPUG00000007828)	snap25 (ENSIPUG00000007864)	ankef1a (ENSIPUG00000007880)	emilin1a (ENSIPUG00000007899)	Stmn4 (ENSIPUG00000007910)	Il17f (ENSIPUG00000007931)	MCM3 (ENSIPUG00000007956)	paqr8 (ENSIPUG00000008073)	znf395 (ENSIPUG00000008084)	pnoc (ENSIPUG00000008105)	PDIK1L (ENSIPUG00000008116)	elp3 (ENSIPUG00000008133)	slc25a24 (ENSIPUG00000008225)
Characiphysae_b	ANCESTRAL SPECIES	23	ENSGT01100000263524.B.a.b	ENSGT00940000157566	ENSGT00940000156212	ENSGT00940000161228.a	ENSGT00940000154603.A.f.b	ENSGT00950000183111.a.b	ENSGT00950000183111.a.a	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a.d	ENSGT01030000234517.H.b.k #10	ENSGT00390000010056.b #22	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000164927.a	ENSGT00950000183190.a.a.b.c.b	ENSGT00940000159466.c	ENSGT00390000014886
Electric eel	MODERN SPECIES	250				ENSEEEG00000006579	mep1a.2 (ENSEEEG00000006578)	mep1a.1 (ENSEEEG00000006577)	pla2g7 (ENSEEEG00000006576)	tdrd6 (ENSEEEG00000006575)	sf3b6 (ENSEEEG00000006573)	vsnl1a (ENSEEEG00000006572)	fam49a (ENSEEEG00000006173)	fbxo16 (ENSEEEG00000006160)	fzd3a (ENSEEEG00000006159)	ENSEEEG00000006157	cdc42bpab (ENSEEEG00000005658) #10	lft1 (ENSEEEG00000005622) #22	hnrnpub (ENSEEEG00000005540)	ENSEEEG00000005526	snap25a (ENSEEEG00000005459)	ankef1a (ENSEEEG00000005449)	emilin1a (ENSEEEG00000005444)	stmn4 (ENSEEEG00000005443)	il17a/f3 (ENSEEEG00000005440)	mcm3 (ENSEEEG00000005426)	paqr8 (ENSEEEG00000005421)	znf395b (ENSEEEG00000005419)	pnocb (ENSEEEG00000005418)	si:ch211-63o20.7 (ENSEEEG00000005417)	elp3 (ENSEEEG00000005247)	slc25a24 (ENSEEEG00000005231)	ENSEEEG00000005222
Characoidei	ANCESTRAL SPECIES	148	ENSGT00940000156212	ENSGT00940000161228.a.c	ENSGT00940000164218.pb	ENSGT00940000161228.a.d	ENSGT00940000154603.A.f.b	ENSGT00950000183111.a.b	ENSGT00950000183111.a.a	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a.d	ENSGT01030000234517.H.b.k #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a
Red-bellied piranha	MODERN SPECIES	380		ENSPNAG00000001295	ENSPNAG00000009050	ENSPNAG00000009012	mep1a.2 (ENSPNAG00000001269)	ENSPNAG00000001238	mep1a.1 (ENSPNAG00000008891)	pla2g7 (ENSPNAG00000008870)	tdrd6 (ENSPNAG00000008860)	sf3b6 (ENSPNAG00000008845)	vsnl1a (ENSPNAG00000005235)	fam49a (ENSPNAG00000001208)	fbxo16 (ENSPNAG00000008805)	fzd3a (ENSPNAG00000001200)	cdc42bpab (ENSPNAG00000008750) #10	lft1 (ENSPNAG00000008516) #22	hnrnpub (ENSPNAG00000001055)
Cyprinoidei	ANCESTRAL SPECIES	8	ENSGT00940000156212	ENSGT00940000161228.c.b	ENSGT00940000154603.A.f.b	ENSGT00950000183111.a.b	ENSGT00950000183111.a.a	ENSGT00940000161228.c.a.b	ENSGT00940000161541	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b.c	ENSGT00940000159021	ENSGT00940000156491.a.d	ENSGT01030000234517.H.b.k #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000180531	ENSGT00940000159887.e	ENSGT00940000157501.h	ENSGT00390000005861.a	ENSGT00390000004799	ENSGT00940000163104	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000157136.b	ENSGT00950000183149.C.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	58	ENSGT00940000161228.c.b.b.a	ENSGT00950000183158.B.b	ENSGT00950000183158.D.b.f.qb	ENSGT00940000161228.c.a.b.b	ENSGT00940000161541	ENSGT00950000183111.a.b	ENSGT00950000183111.a.a	ENSGT00390000005233.b.c	ENSGT00940000159049.a.a	ENSGT00390000005908.b.b	ENSGT00940000156513.a.b.b.a.a	ENSGT00390000015159.a.b.c.a	ENSGT00940000159021.a	ENSGT00940000156491.a.d.a.a	ENSGT01030000234517.H.b.k.b #10	ENSGT00390000010056.b.c #22	ENSGT00940000156546.`b.a.a	ENSGT00940000159075.B.j.b	ENSGT00390000005861.a.a	ENSGT00940000156852.d.b	ENSGT01030000234633.A.a.b.a	ENSGT01030000234597.a.b.a.b.e	ENSGT00940000156618.c.a.a	ENSGT01050000244824.B.db.b	ENSGT00940000159860.e.b	ENSGT00940000157136.b.b	ENSGT00950000183149.C.b.c	ENSGT00940000166937.b	ENSGT00390000013141.a	ENSGT00940000164927.a.a	ENSGT00950000183190.a.a.b.c.b.a.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	39	opn5 (ENSCARG00000028711)	cd2ap (ENSCARG00000028733)	tnfrsf21 (ENSCARG00000028767)	ENSCARG00000028777	ENSCARG00000028787	mep1a.2 (ENSCARG00000028797)	mep1a.1 (ENSCARG00000028839)	pla2g7 (ENSCARG00000029062)	tdrd6 (ENSCARG00000029078)	sf3b6 (ENSCARG00000029100)	vsnl1a (ENSCARG00000029106)	fam49a (ENSCARG00000029119)	fbxo16 (ENSCARG00000029185)	fzd3a (ENSCARG00000029219)	cdc42bpab (ENSCARG00000029283) #10	lft1 (ENSCARG00000031196) #22	ywhaqa (ENSCARG00000031208)	ENSCARG00000031235	cpsf3 (ENSCARG00000031673)	asap2b (ENSCARG00000031807)	e2f6 (ENSCARG00000033078)	ENSCARG00000033098	heca (ENSCARG00000033106)	ENSCARG00000033118	slc25a27 (ENSCARG00000033128)	NCOA1 (ENSCARG00000033214)	rpl7l1 (ENSCARG00000033274)	slc5a6a (ENSCARG00000033370)	cdc42bpab (ENSCARG00000034083) #10	lft1 (ENSCARG00000049599) #22	hnrnpub (ENSCARG00000049625)
Goldfish	MODERN SPECIES	39	cdc42bpab (ENSCARG00000029283) #10	lft1 (ENSCARG00000031196) #22	ywhaqa (ENSCARG00000031208)	ENSCARG00000031235	cpsf3 (ENSCARG00000031673)	asap2b (ENSCARG00000031807)	e2f6 (ENSCARG00000033078)	ENSCARG00000033098	heca (ENSCARG00000033106)	ENSCARG00000033118	slc25a27 (ENSCARG00000033128)	NCOA1 (ENSCARG00000033214)	rpl7l1 (ENSCARG00000033274)	slc5a6a (ENSCARG00000033370)	cdc42bpab (ENSCARG00000034083) #10	lft1 (ENSCARG00000049599) #22	hnrnpub (ENSCARG00000049625)	ENSCARG00000049799	cnstb (ENSCARG00000049812)	snap25a (ENSCARG00000049820)	emilin1a (ENSCARG00000049857)	ppfia1 (ENSCARG00000050096)	ENSCARG00000056998	ST7 (ENSCARG00000057129)	ENSCARG00000062639	CTTN (ENSCARG00000062656)	ENSCARG00000054359	rap2b (ENSCARG00000054464)	P2RY1 (ENSCARG00000054471)	ENSCARG00000054477	ENSCARG00000054529
Cyprininae_a	ANCESTRAL SPECIES	257												ENSGT00390000015159.a.b.c.a	ENSGT00940000159021.a	ENSGT00940000156491.a.d.a.a	ENSGT01030000234517.H.b.k.b #10	ENSGT00390000010056.b.c #22	ENSGT00940000156546.`b.a.a	ENSGT00940000159075.B.j.b	ENSGT00390000005861.a.a	ENSGT00940000156852.d.b	ENSGT01030000234633.A.a.b.a	ENSGT01030000234597.a.b.a.b.e	ENSGT00940000156618.c.a.a	ENSGT01050000244824.B.db.b	ENSGT00940000157136.b.b	ENSGT00950000183149.C.b.c	ENSGT00940000166937.b	ENSGT00390000013141.a	ENSGT00940000164927.a.a	ENSGT00950000183190.a.a.b.c.b.a.a	ENSGT00950000183190.a.a.b.c.b.b
Common carp reference	MODERN SPECIES	28	ENSCCRG00000056549	ENSCCRG00000044474	ENSCCRG00000078758	ENSCCRG00000008903	ENSCCRG00000031365	mep1a.2 (ENSCCRG00000031366)	mep1a.1 (ENSCCRG00000031371)	pla2g7 (ENSCCRG00000022724)	tdrd6 (ENSCCRG00000068253)	ENSCCRG00000073435	ENSCCRG00000022773	ENSCCRG00000050960	fbxo16 (ENSCCRG00000050979)	fzd3a (ENSCCRG00000011341)	cdc42bpab (ENSCCRG00000010550) #10	lft1 (ENSCCRG00000023109) #22	hnrnpub (ENSCCRG00000009415)	ENSCCRG00000009391	cnstb (ENSCCRG00000078235)	sccpdhb (ENSCCRG00000009379)	snap25a (ENSCCRG00000034090)	ankef1a (ENSCCRG00000032559)	emilin1a (ENSCCRG00000056865)	stmn4 (ENSCCRG00000068496)	il17a/f3 (ENSCCRG00000078734)	mcm3 (ENSCCRG00000020414)	znf395b (ENSCCRG00000007688)	si:ch211-63o20.7 (ENSCCRG00000066954)	elp3 (ENSCCRG00000007703)	slc25a24 (ENSCCRG00000062518)	ENSCCRG00000070865
Golden-line barbel	MODERN SPECIES	259				pak2b (ENSSGRG00000033029)	aqp12 (ENSSGRG00000033369)	ENSSGRG00000033370	AMPD2 (ENSSGRG00000033371)	ENSSGRG00000033373	irf6 (ENSSGRG00000033374)	ENSSGRG00000033376	ENSSGRG00000033377	fam49a (ENSSGRG00000033378)	fbxo16 (ENSSGRG00000033389)	fzd3a (ENSSGRG00000033390)	cdc42bpab (ENSSGRG00000033401) #10	lft1 (ENSSGRG00000034692) #22	hnrnpub (ENSSGRG00000034693)	cnstb (ENSSGRG00000034694)	sccpdhb (ENSSGRG00000034695)	cnstb (ENSSGRG00000034696)	snap25a (ENSSGRG00000034697)	ENSSGRG00000034703	emilin1a (ENSSGRG00000034705)	stmn4 (ENSSGRG00000034706)	il17a/f3 (ENSSGRG00000034707)	mcm3 (ENSSGRG00000034715)	znf395b (ENSSGRG00000035919)	pnocb (ENSSGRG00000035920)	si:ch211-63o20.7 (ENSSGRG00000035921)	elp3 (ENSSGRG00000035922)	slc25a24 (ENSSGRG00000036074)
Cyprininae	ANCESTRAL SPECIES	339		ENSGT00940000156827.cc.a.a.b	ENSGT01100000263524.B.a.b.b	ENSGT00940000157566.p	ENSGT00940000156212.m.a	ENSGT00940000161228.c.b.a	ENSGT00940000154603.A.f.b	ENSGT00390000005233.b.d	ENSGT00940000159049.a.b	ENSGT00390000005908.b.a	ENSGT00940000156513.a.b.a	ENSGT00390000015159.a.b.c.b.a.a	ENSGT00940000159021.b	ENSGT00940000156491.a.d.a.b	ENSGT01030000234517.H.b.k.a #10	ENSGT00390000010056.b.d #22	ENSGT00940000156546.`b.a.b	ENSGT00940000159075.B.j.a	ENSGT00390000005861.a.b	ENSGT00390000004799.n	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d.a	ENSGT01030000234633.A.a.b.b	ENSGT01030000234597.a.b.a.b.f	ENSGT00940000156618.c.a.b	ENSGT01050000244824.B.db.a	ENSGT00940000159860.e.a	ENSGT00940000157136.b.a	ENSGT00950000183149.C.b.d	ENSGT00940000166937.a	ENSGT00390000013141.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1236																lft1 (ENSCARG00000032747) #22
Goldfish	MODERN SPECIES	12	ENSCARG00000035062	lratd1 (ENSCARG00000035073)	tnfrsf21 (ENSCARG00000035080)	ENSCARG00000035097	ENSCARG00000035127	ENSCARG00000035138	ENSCARG00000035149	pla2g7 (ENSCARG00000035163)	tdrd6 (ENSCARG00000035483)	sf3b6 (ENSCARG00000035496)	vsnl1a (ENSCARG00000035506)	fam49a (ENSCARG00000035535)	ENSCARG00000003651	fzd3a (ENSCARG00000003670)	cdc42bpab (ENSCARG00000003756) #10	lft1 (ENSCARG00000004860) #22	hnrnpub (ENSCARG00000004898)	ENSCARG00000005266	cnstb (ENSCARG00000005271)	sccpdhb (ENSCARG00000005286)	snap25a (ENSCARG00000005536)	ankef1a (ENSCARG00000005555)	emilin1a (ENSCARG00000005563)	stmn4 (ENSCARG00000005572)	il17a/f3 (ENSCARG00000005581)	mcm3 (ENSCARG00000005596)	paqr8 (ENSCARG00000005646)	znf395b (ENSCARG00000005649)	pnocb (ENSCARG00000005656)	si:ch211-63o20.7 (ENSCARG00000005660)	elp3 (ENSCARG00000005669)
Cyprininae_a	ANCESTRAL SPECIES	323		ENSGT00940000156827.cc.a.a.b	ENSGT01100000263524.B.a.b.b	ENSGT00940000157566.p	ENSGT00940000156212.m.a	ENSGT00940000161228.c.b.a	ENSGT00940000154603.A.f.b	ENSGT00390000005233.b.d	ENSGT00940000159049.a.b	ENSGT00390000005908.a	ENSGT00940000156513.a.b.b.b	ENSGT00390000015159.a.b.c.b.a.a	ENSGT00940000159021.b	ENSGT00940000156491.a.d.a.b	ENSGT01030000234517.H.b.k.a #10	ENSGT00390000010056.b.d #22	ENSGT00940000156546.`b.a.b	ENSGT00940000159075.B.j.a	ENSGT00390000005861.a.b	ENSGT00390000004799.n	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d.a	ENSGT01030000234633.A.a.b.b	ENSGT01030000234597.a.b.a.b.f	ENSGT00940000156618.c.a.b	ENSGT01050000244824.B.db.a	ENSGT00940000159860.e.a	ENSGT00940000157136.b.a	ENSGT00950000183149.C.b.d	ENSGT00940000166937.a	ENSGT00390000013141.b
Golden-line barbel	MODERN SPECIES	472	CNIH3 (ENSSGRG00000034644) #31	ENSSGRG00000034645	ptchd4 (ENSSGRG00000034646)	opn5 (ENSSGRG00000034647)	cd2ap (ENSSGRG00000034648)	tnfrsf21 (ENSSGRG00000034650)	ENSSGRG00000034651	ENSSGRG00000034653	pla2g7 (ENSSGRG00000034654)	tdrd6 (ENSSGRG00000034655)	vsnl1a (ENSSGRG00000034656)	fam49a (ENSSGRG00000034659)	fbxo16 (ENSSGRG00000034720)	fzd3a (ENSSGRG00000034722)	cdc42bpab (ENSSGRG00000034778) #10	lft1 (ENSSGRG00000041489) #22	hnrnpub (ENSSGRG00000041491)	ENSSGRG00000041512	cnstb (ENSSGRG00000041514)	sccpdhb (ENSSGRG00000041516)	SNAP25 (ENSSGRG00000041520)	ankef1a (ENSSGRG00000041525)	emilin1a (ENSSGRG00000041528)	stmn4 (ENSSGRG00000041532)	il17a/f3 (ENSSGRG00000041534)	mcm3 (ENSSGRG00000041541)	paqr8 (ENSSGRG00000041955)	znf395b (ENSSGRG00000041956)	pnocb (ENSSGRG00000041957)	si:ch211-63o20.7 (ENSSGRG00000041959)	elp3 (ENSSGRG00000041972)
Common carp reference	MODERN SPECIES	34	tnfrsf21 (ENSCCRG00000037055)	ENSCCRG00000009075	ENSCCRG00000061979	ENSCCRG00000081206	ENSCCRG00000062316	ENSCCRG00000014027	ENSCCRG00000014053	pla2g7 (ENSCCRG00000015127)	tdrd6 (ENSCCRG00000022759)	sf3b6 (ENSCCRG00000054842)	vsnl1a (ENSCCRG00000059197)	fam49a (ENSCCRG00000050994)	fbxo16 (ENSCCRG00000011349)	fzd3a (ENSCCRG00000050984)	cdc42bpab (ENSCCRG00000033766) #10	lft1 (ENSCCRG00000010540) #22	hnrnpub (ENSCCRG00000023049)	ENSCCRG00000023045	cnstb (ENSCCRG00000061873)	sccpdhb (ENSCCRG00000003293)	ENSCCRG00000057731	ankef1a (ENSCCRG00000034142)	emilin1a (ENSCCRG00000075193)	stmn4 (ENSCCRG00000074692)	il17a/f3 (ENSCCRG00000067104)	mcm3 (ENSCCRG00000005245)	paqr8 (ENSCCRG00000072910)	znf395b (ENSCCRG00000005473)	pnocb (ENSCCRG00000059629)	si:ch211-63o20.7 (ENSCCRG00000054786)	elp3 (ENSCCRG00000047319)
Zebrafish	MODERN SPECIES	12	ENSDARG00000042829	ADGRF1 (ENSDARG00000091757)	ENSDARG00000086445	ENSDARG00000075134	ENSDARG00000093008	mep1a.2 (ENSDARG00000008029)	mep1a.1 (ENSDARG00000029747)	pla2g7 (ENSDARG00000003584)	tdrd6 (ENSDARG00000070052)	sf3b6 (ENSDARG00000009753)	vsnl1a (ENSDARG00000023228)	fam49a (ENSDARG00000006672)	fzd3a (ENSDARG00000021664)	fbxo16 (ENSDARG00000033949)	cdc42bpab (ENSDARG00000016464) #10	lft1 (ENSDARG00000019920) #22	hnrnpub (ENSDARG00000004735)	ENSDARG00000024575	cnstb (ENSDARG00000042759)	sccpdhb (ENSDARG00000024564)	snap25a (ENSDARG00000020609)	ankef1a (ENSDARG00000019135)	emilin1a (ENSDARG00000024537)	il17a/f3 (ENSDARG00000041976)	stmn4 (ENSDARG00000030106)	mcm3 (ENSDARG00000024204)	paqr8 (ENSDARG00000088828)	znf395b (ENSDARG00000024195)	pnocb (ENSDARG00000024189)	si:ch211-63o20.7 (ENSDARG00000042000)	elp3 (ENSDARG00000042005)
Euteleosteomorpha	ANCESTRAL SPECIES	87	ENSGT00550000074807.d.a.a	ENSGT00390000016736.a.j	ENSGT00940000158937.b	ENSGT00940000160877	ENSGT00940000159056.g	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937
Acanthomorphata	ANCESTRAL SPECIES	35	ENSGT00940000160877	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000180472	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.c.f	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT00390000000568	ENSGT00950000183111.b.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00940000160877	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000180472	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00940000160877	ENSGT00940000159056.g	ENSGT00940000159462.b	ENSGT00940000180472	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937
Tiger tail seahorse	MODERN SPECIES	500	KIF13B (ENSHCOG00000004099)	elp3 (ENSHCOG00000004054)	si:ch211-63o20.7 (ENSHCOG00000004037)	pnocb (ENSHCOG00000004019)	znf395b (ENSHCOG00000004001)	paqr8 (ENSHCOG00000003989)	mcm3 (ENSHCOG00000003973)	stmn4 (ENSHCOG00000003923)	emilin1a (ENSHCOG00000003905)	ankef1a (ENSHCOG00000003891)	snap25a (ENSHCOG00000003838)	sccpdhb (ENSHCOG00000003809)	ENSHCOG00000003795	fzd3a (ENSHCOG00000003769)	cdc42bpab (ENSHCOG00000003743) #10	lft1 (ENSHCOG00000020138) #22	hnrnpub (ENSHCOG00000020091)	fbxo16 (ENSHCOG00000020077)	fam49a (ENSHCOG00000020000)	vsnl1a (ENSHCOG00000000609)	sf3b6 (ENSHCOG00000019962)	tdrd6 (ENSHCOG00000019950)	pla2g7 (ENSHCOG00000019935)	ints9 (ENSHCOG00000019893)	prkrip1 (ENSHCOG00000019826)	glrx5 (ENSHCOG00000019793)	serpina1l (ENSHCOG00000019784)	flrt2 (ENSHCOG00000019778)	zgc:153383 (ENSHCOG00000019764)	psma6b (ENSHCOG00000019759)	nfkbiaa (ENSHCOG00000019736)
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000158937.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917
Oryzias	ANCESTRAL SPECIES	19	ENSGT00390000016736.a.j	ENSGT00940000158937.b	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000175238
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT00550000074807.d.a.a	ENSGT00390000016736.a.j	ENSGT00940000158937.b	ENSGT00940000160877.g.a	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000175238
Indian medaka	MODERN SPECIES	22	zgc:153383 (ENSOMEG00000000355)	flrt2 (ENSOMEG00000014286)	serpina1l (ENSOMEG00000014294)	ENSOMEG00000014319	glrx5 (ENSOMEG00000014329)	prkrip1 (ENSOMEG00000014339)	ints9 (ENSOMEG00000014390)	pla2g7 (ENSOMEG00000014433)	tdrd6 (ENSOMEG00000014481)	sf3b6 (ENSOMEG00000014506)	vsnl1a (ENSOMEG00000014521)	fam49a (ENSOMEG00000014624)	fbxo16 (ENSOMEG00000000364)	fzd3a (ENSOMEG00000001038)	cdc42bpab (ENSOMEG00000014868) #10	lft1 (ENSOMEG00000014909) #22	hnrnpub (ENSOMEG00000014951)	ENSOMEG00000014992	cnstb (ENSOMEG00000015019)	snap25a (ENSOMEG00000015054)	ankef1a (ENSOMEG00000015083)	emilin1a (ENSOMEG00000015102)	stmn4 (ENSOMEG00000015119)	il17a/f3 (ENSOMEG00000015139)	mcm3 (ENSOMEG00000015230)	paqr8 (ENSOMEG00000015257)	znf395b (ENSOMEG00000015274)	pnocb (ENSOMEG00000015283)	si:ch211-63o20.7 (ENSOMEG00000015299)	elp3 (ENSOMEG00000015360)	ENSOMEG00000015389
Javanese ricefish	MODERN SPECIES	16	flrt2 (ENSOJAG00000008514)	ENSOJAG00000008520	serpina1l (ENSOJAG00000008525)	ENSOJAG00000008531	prkrip1 (ENSOJAG00000008544)	glrx5 (ENSOJAG00000008555)	ints9 (ENSOJAG00000008592)	pla2g7 (ENSOJAG00000009042)	tdrd6 (ENSOJAG00000003614)	sf3b6 (ENSOJAG00000003639)	vsnl1a (ENSOJAG00000003661)	fam49a (ENSOJAG00000003754)	fbxo16 (ENSOJAG00000004130)	fzd3a (ENSOJAG00000004150)	cdc42bpab (ENSOJAG00000005241) #10	lft1 (ENSOJAG00000015234) #22	hnrnpub (ENSOJAG00000015260)	ENSOJAG00000015382	cnstb (ENSOJAG00000015449)	snap25a (ENSOJAG00000015504)	ankef1a (ENSOJAG00000015571)	emilin1a (ENSOJAG00000015582)	stmn4 (ENSOJAG00000015593)	il17a/f3 (ENSOJAG00000015606)	mcm3 (ENSOJAG00000015618)	paqr8 (ENSOJAG00000015988)	znf395b (ENSOJAG00000015995)	pnocb (ENSOJAG00000015999)	si:ch211-63o20.7 (ENSOJAG00000016004)	elp3 (ENSOJAG00000016009)	ENSOJAG00000016197
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT00390000016736.a.j	ENSGT00940000158937.b	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000175238
Chinese medaka	MODERN SPECIES	796			flrt2 (ENSOSIG00000020584)	serpina1l (ENSOSIG00000020582)	clmnb (ENSOSIG00000020578)	prkrip1 (ENSOSIG00000020574)	glrx5 (ENSOSIG00000020573)	pla2g7 (ENSOSIG00000020570)	tdrd6 (ENSOSIG00000020567)	sf3b6 (ENSOSIG00000020566)	VSNL1 (ENSOSIG00000020565)	fam49a (ENSOSIG00000020436)	fbxo16 (ENSOSIG00000020402)	fzd3a (ENSOSIG00000020399)	cdc42bpab (ENSOSIG00000013919) #10	lft1 (ENSOSIG00000013816) #22	hnrnpub (ENSOSIG00000013815)	ENSOSIG00000013811	ENSOSIG00000013807	cnstb (ENSOSIG00000013803)	snap25a (ENSOSIG00000013608)	ankef1a (ENSOSIG00000013599)	emilin1a (ENSOSIG00000013585)	stmn4 (ENSOSIG00000013574)	il17a/f3 (ENSOSIG00000013568)	mcm3 (ENSOSIG00000013558)	znf395b (ENSOSIG00000013555)	pnocb (ENSOSIG00000013551)	si:ch211-63o20.7 (ENSOSIG00000013548)	elp3 (ENSOSIG00000013540)	ENSOSIG00000013536
Japanese Medaka HdrR	MODERN SPECIES	16	ENSORLG00000029674	serpina1l (ENSORLG00000015892)	ENSORLG00000015895	ints9 (ENSORLG00000015930)	glrx5 (ENSORLG00000025628)	pla2g7 (ENSORLG00000015947)	amh (ENSORLG00000015951)	sf3b6 (ENSORLG00000015955)	VSNL1 (ENSORLG00000015960)	ENSORLG00000029879	ENSORLG00000023053	fam49a (ENSORLG00000015966)	fbxo16 (ENSORLG00000015978)	fzd3a (ENSORLG00000015986)	cdc42bpab (ENSORLG00000016081) #10	lft1 (ENSORLG00000016105) #22	hnrnpub (ENSORLG00000016114)	ENSORLG00000016117	cnstb (ENSORLG00000026472)	snap25a (ENSORLG00000016124)	ankef1a (ENSORLG00000016142)	emilin1a (ENSORLG00000016152)	stmn4 (ENSORLG00000016161)	il17a/f3 (ENSORLG00000027446)	mcm3 (ENSORLG00000016187)	paqr8 (ENSORLG00000016192)	znf395b (ENSORLG00000016195)	pnocb (ENSORLG00000016198)	si:ch211-63o20.7 (ENSORLG00000016204)	elp3 (ENSORLG00000016211)	ENSORLG00000025386
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00940000158937.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Aplocheiloidei	ANCESTRAL SPECIES	34	ENSGT00940000158937.b	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00940000156513.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a
Turquoise killifish	MODERN SPECIES	1613	ENSNFUG00015010203	HMBOX1 (ENSNFUG00015010215)	KIF13B (ENSNFUG00015010336)	elp3 (ENSNFUG00015011836)	si:ch211-63o20.7 (ENSNFUG00015012319)	ENSNFUG00015012325	PNOCB (ENSNFUG00015012328)	znf395b (ENSNFUG00015012332)	fam49a (ENSNFUG00015012353)	ENSNFUG00015012390	ENSNFUG00015012397	ENSNFUG00015012398	ENSNFUG00015012404	ENSNFUG00015012409	ENSNFUG00015012410	LFT1 (ENSNFUG00015012414) #22	ENSNFUG00015012421	HNRNPUA (ENSNFUG00015012457)	ENSNFUG00015012587	ENSNFUG00015012601	SNAP25 (ENSNFUG00015012613)	EMILIN1A (ENSNFUG00015012650)	ENSNFUG00015012671	ENSNFUG00015012673
Mangrove rivulus	MODERN SPECIES	12	flrt2 (ENSKMAG00000003794)	SERPINA4 (ENSKMAG00000003801)	ENSKMAG00000003812	ENSKMAG00000003829	prkrip1 (ENSKMAG00000003842)	glrx5 (ENSKMAG00000003866)	ints9 (ENSKMAG00000003883)	pla2g7 (ENSKMAG00000003957)	ENSKMAG00000003969	sf3b6 (ENSKMAG00000004000)	VSNL1 (ENSKMAG00000004010)	fam49a (ENSKMAG00000004030)	fbxo16 (ENSKMAG00000004106)	fzd3a (ENSKMAG00000004123)	cdc42bpab (ENSKMAG00000004203) #10	lft1 (ENSKMAG00000004477) #22	hnrnpub (ENSKMAG00000004532)	ENSKMAG00000004551	cnstb (ENSKMAG00000004586)	snap25a (ENSKMAG00000004613)
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00940000158937.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000174799	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937
NAME_4	ANCESTRAL SPECIES	167		ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000174799	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Mummichog	MODERN SPECIES	2396		serpina1l (ENSFHEG00000023056)	ENSFHEG00000023036	clmnb (ENSFHEG00000023021)	prkrip1 (ENSFHEG00000022975)	glrx5 (ENSFHEG00000022962)	ints9 (ENSFHEG00000022949)	pla2g7 (ENSFHEG00000022930)	tdrd6 (ENSFHEG00000022915)	sf3b6 (ENSFHEG00000000685)	VSNL1 (ENSFHEG00000022867)	fam49a (ENSFHEG00000022849)	fbxo16 (ENSFHEG00000022818)	fzd3a (ENSFHEG00000022807)	cdc42bpab (ENSFHEG00000000836) #10	lft1 (ENSFHEG00000022654) #22	hnrnpub (ENSFHEG00000022639)	ENSFHEG00000022632	cnstb (ENSFHEG00000022509)	snap25a (ENSFHEG00000022492)	ENSFHEG00000022455	ankef1a (ENSFHEG00000022436)	emilin1a (ENSFHEG00000022428)
Sheepshead minnow	MODERN SPECIES	673												fam49a (ENSCVAG00000004748)	fbxo16 (ENSCVAG00000004708)	fzd3a (ENSCVAG00000004608)	cdc42bpab (ENSCVAG00000004580) #10	lft1 (ENSCVAG00000004301) #22	hnrnpub (ENSCVAG00000004280)	ENSCVAG00000004063	cnstb (ENSCVAG00000004051)	snap25a (ENSCVAG00000004040)	ankef1a (ENSCVAG00000004008)	emilin1a (ENSCVAG00000003993)	stmn4 (ENSCVAG00000003980)	il17a/f3 (ENSCVAG00000003976)	mcm3 (ENSCVAG00000003962)
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT01040000244242	ENSGT00940000180472	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000174799	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937
Poecilia	ANCESTRAL SPECIES	9	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT01040000244242	ENSGT00940000180472	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
NAME_6	ANCESTRAL SPECIES	85	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT01040000244242	ENSGT00940000180472	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917
Amazon molly	MODERN SPECIES	463												fam49a (ENSPFOG00000004341)	fbxo16 (ENSPFOG00000004233)	fzd3a (ENSPFOG00000004133)	cdc42bpab (ENSPFOG00000003122) #10	lft1 (ENSPFOG00000003010) #22	hnrnpub (ENSPFOG00000002908)	ENSPFOG00000002809	cnstb (ENSPFOG00000002789)	snap25a (ENSPFOG00000002657)	ankef1a (ENSPFOG00000002517)	emilin1a (ENSPFOG00000002432)	stmn4 (ENSPFOG00000002375)	il17a/f3 (ENSPFOG00000024626)	mcm3 (ENSPFOG00000002039)	paqr8 (ENSPFOG00000020530)	znf395b (ENSPFOG00000001931)	pnocb (ENSPFOG00000001912)	si:ch211-63o20.7 (ENSPFOG00000001871)	elp3 (ENSPFOG00000001657)	KIF13B (ENSPFOG00000001119)
Sailfin molly	MODERN SPECIES	440															ENSPLAG00000004090 #10	lft1 (ENSPLAG00000004151) #22	hnrnpub (ENSPLAG00000004160)	ENSPLAG00000004197	ENSPLAG00000004210	snap25a (ENSPLAG00000004225)	ankef1a (ENSPLAG00000004292)	ENSPLAG00000004303	emilin1a (ENSPLAG00000004313)	stmn4 (ENSPLAG00000004324)
Guppy	MODERN SPECIES	452	flrt2 (ENSPREG00000018631)	serpina1l (ENSPREG00000018644)	ENSPREG00000018661	prkrip1 (ENSPREG00000018690)	glrx5 (ENSPREG00000018701)	ints9 (ENSPREG00000018730)	pla2g7 (ENSPREG00000018803)	tdrd6 (ENSPREG00000018829)	sf3b6 (ENSPREG00000018852)	ENSPREG00000018863	vsnl1a (ENSPREG00000018875)	fam49a (ENSPREG00000018894)	fbxo16 (ENSPREG00000018940)	fzd3a (ENSPREG00000018969)	cdc42bpab (ENSPREG00000019012) #10	lft1 (ENSPREG00000019085) #22	ENSPREG00000019117	ENSPREG00000019131	ENSPREG00000019145	cnstb (ENSPREG00000019179)	snap25a (ENSPREG00000019226)	ankef1a (ENSPREG00000019273)	emilin1a (ENSPREG00000019292)	stmn4 (ENSPREG00000019308)	ENSPREG00000019327	mcm3 (ENSPREG00000019355)	paqr8 (ENSPREG00000019405)	znf395b (ENSPREG00000019411)	pnocb (ENSPREG00000019418)	si:ch211-63o20.7 (ENSPREG00000019424)	elp3 (ENSPREG00000019454)
Platyfish	MODERN SPECIES	6	ENSXMAG00000021364	flrt2 (ENSXMAG00000019679)	serpina1l (ENSXMAG00000010698)	ENSXMAG00000010707	prkrip1 (ENSXMAG00000019896)	glrx5 (ENSXMAG00000025645)	ints9 (ENSXMAG00000010715)	pla2g7 (ENSXMAG00000010731)	tdrd6 (ENSXMAG00000025787)	sf3b6 (ENSXMAG00000010747)	vsnl1a (ENSXMAG00000010752)	fam49a (ENSXMAG00000010759)	fbxo16 (ENSXMAG00000010768)	fzd3a (ENSXMAG00000010779)	cdc42bpab (ENSXMAG00000010796) #10	lft1 (ENSXMAG00000014683) #22	hnrnpub (ENSXMAG00000010356)	ENSXMAG00000010348	cnstb (ENSXMAG00000028462)	snap25a (ENSXMAG00000007734)	ENSXMAG00000028320	ankef1a (ENSXMAG00000007741)	emilin1a (ENSXMAG00000007750)	stmn4 (ENSXMAG00000007755)	ENSXMAG00000024073	mcm3 (ENSXMAG00000007764)	paqr8 (ENSXMAG00000019722)	znf395b (ENSXMAG00000007800)	pnocb (ENSXMAG00000007809)	si:ch211-63o20.7 (ENSXMAG00000025014)	elp3 (ENSXMAG00000001825)
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917
Pomacentridae	ANCESTRAL SPECIES	30	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917
Pomacentridae_A	ANCESTRAL SPECIES	26	ENSGT00940000160877.g.b.a	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917
Amphiprion	ANCESTRAL SPECIES	113	ENSGT00940000160877.g.b.a	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917
Clown anemonefish	MODERN SPECIES	610															cdc42bpab (ENSAOCG00000015715) #10	lft1 (ENSAOCG00000015825) #22	hnrnpub (ENSAOCG00000015843)	ENSAOCG00000015897
Orange clownfish	MODERN SPECIES	2	ENSAPEG00000015518	SERPINA4 (ENSAPEG00000015491)	ENSAPEG00000015475	clmnb (ENSAPEG00000015453)	prkrip1 (ENSAPEG00000015439)	glrx5 (ENSAPEG00000015433)	ints9 (ENSAPEG00000015363)	pla2g7 (ENSAPEG00000015345)	tdrd6 (ENSAPEG00000015328)	sf3b6 (ENSAPEG00000015311)	vsnl1a (ENSAPEG00000015297)	fam49a (ENSAPEG00000015213)	fbxo16 (ENSAPEG00000015182)	fzd3a (ENSAPEG00000015142)	cdc42bpab (ENSAPEG00000014843) #10	lft1 (ENSAPEG00000014731) #22	hnrnpub (ENSAPEG00000014679)	ENSAPEG00000014631	cnstb (ENSAPEG00000014613)	sccpdhb (ENSAPEG00000014595)	snap25a (ENSAPEG00000014574)	ankef1a (ENSAPEG00000014440)	emilin1a (ENSAPEG00000014361)	stmn4 (ENSAPEG00000014317)	ENSAPEG00000014273	mcm3 (ENSAPEG00000014200)	paqr8 (ENSAPEG00000014188)	znf395b (ENSAPEG00000014182)	pnocb (ENSAPEG00000014170)	si:ch211-63o20.7 (ENSAPEG00000014157)	elp3 (ENSAPEG00000014113)
Spiny chromis	MODERN SPECIES	606											ENSAPOG00000017287	pgam2 (ENSAPOG00000017307)	neflb (ENSAPOG00000017313)	nefma (ENSAPOG00000017321)	ENSAPOG00000000468 #10	lft1 (ENSAPOG00000017349) #22	hnrnpub (ENSAPOG00000017400)	ENSAPOG00000017413	cnstb (ENSAPOG00000017427)	sccpdhb (ENSAPOG00000017439)	snap25a (ENSAPOG00000017456)
Bicolor damselfish	MODERN SPECIES	2474															cdc42bpab (ENSSPAG00000011744) #10	lft1 (ENSSPAG00000011839) #22	hnrnpub (ENSSPAG00000011853)	ENSSPAG00000011879
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00940000158937.b	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00940000154856.A.b	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000160877.g.b.c	ENSGT00940000160877.g.b.d	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00940000154856.A.b	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000160877.g.b.c	ENSGT00940000160877.g.b.d	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00940000154856.A.b	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00940000160877.g.b.d	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT00940000154856.A.b.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00940000154856.A.b.h	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e.c	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00940000160877.g.b.d	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT00940000154856.A.b.h	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00940000154856.A.b.g	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e.c	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Haplochromini_B	ANCESTRAL SPECIES	22	ENSGT00940000160877.g.b.d	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT00940000154856.A.b.g.b	ENSGT00390000005003.c	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00940000154856.A.b.g.a.b	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e.c	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Eastern happy	MODERN SPECIES	6	prkrip1 (ENSACLG00000007523)	glrx5 (ENSACLG00000007530)	ints9 (ENSACLG00000007637)	pla2g7 (ENSACLG00000007662)	tdrd6 (ENSACLG00000007717)	prkrip1 (ENSACLG00000007735)	ENSACLG00000007742	glrx5 (ENSACLG00000007774)	ENSACLG00000007777	sf3b6 (ENSACLG00000007793)	vsnl1a (ENSACLG00000007802)	fam49a (ENSACLG00000008056)	fbxo16 (ENSACLG00000008073)	fzd3a (ENSACLG00000008090)	cdc42bpab (ENSACLG00000008108) #10	lft1 (ENSACLG00000008151) #22	hnrnpub (ENSACLG00000008165)	ENSACLG00000008195	cnstb (ENSACLG00000008204)	ENSACLG00000008209	snap25a (ENSACLG00000008238)	ankef1a (ENSACLG00000008259)	emilin1a (ENSACLG00000008275)	stmn4 (ENSACLG00000008407)	ENSACLG00000008427	mcm3 (ENSACLG00000008434)	ENSACLG00000008462	znf395b (ENSACLG00000008468)	pnocb (ENSACLG00000008488)	si:ch211-63o20.7 (ENSACLG00000008500)	elp3 (ENSACLG00000008972)
Zebra mbuna	MODERN SPECIES	1097	ENSMZEG00005006040	SERPINA4 (ENSMZEG00005006035)	clmnb (ENSMZEG00005006019)	ENSMZEG00005003774	prkrip1 (ENSMZEG00005003748)	glrx5 (ENSMZEG00005003740)	ints9 (ENSMZEG00005003651)	pla2g7 (ENSMZEG00005003610)	tdrd6 (ENSMZEG00005003573)	sf3b6 (ENSMZEG00005003557)	vsnl1a (ENSMZEG00005003539)	fam49a (ENSMZEG00005003512)	fbxo16 (ENSMZEG00005003482)	fzd3a (ENSMZEG00005003453)	cdc42bpab (ENSMZEG00005003324) #10	lft1 (ENSMZEG00005003242) #22	hnrnpub (ENSMZEG00005003185)	ENSMZEG00005003141	cnstb (ENSMZEG00005003109)	ENSMZEG00005002760	snap25a (ENSMZEG00005002732)	ankef1a (ENSMZEG00005002682)	emilin1a (ENSMZEG00005002680)
P. nyererei	MODERN SPECIES	308	ENSPNYG00000021975	SERPINA4 (ENSPNYG00000021959)	ENSPNYG00000021943	ENSPNYG00000021937	prkrip1 (ENSPNYG00000021914)	ints9 (ENSPNYG00000021900)	glrx5 (ENSPNYG00000021865)	pla2g7 (ENSPNYG00000021856)	tdrd6 (ENSPNYG00000021847)	sf3b6 (ENSPNYG00000021832)	vsnl1a (ENSPNYG00000021821)	fam49a (ENSPNYG00000021805)	fbxo16 (ENSPNYG00000021787)	fzd3a (ENSPNYG00000021766)	cdc42bpab (ENSPNYG00000021718) #10	lft1 (ENSPNYG00000021680) #22	hnrnpub (ENSPNYG00000021642)	ENSPNYG00000021572	cnstb (ENSPNYG00000021537)	ENSPNYG00000021503	snap25a (ENSPNYG00000021470)	ankef1a (ENSPNYG00000021429)	emilin1a (ENSPNYG00000021397)	stmn4 (ENSPNYG00000021377)	ENSPNYG00000021361	mcm3 (ENSPNYG00000021333)	ENSPNYG00000021315	znf395b (ENSPNYG00000021284)	pnocb (ENSPNYG00000021265)	si:ch211-63o20.7 (ENSPNYG00000021251)	elp3 (ENSPNYG00000021199)
Burton s mouthbrooder	MODERN SPECIES	286	ENSHBUG00000012908	SERPINA4 (ENSHBUG00000012898)	ENSHBUG00000012892	ENSHBUG00000012844	prkrip1 (ENSHBUG00000012745)	glrx5 (ENSHBUG00000012723)	ints9 (ENSHBUG00000000821)	pla2g7 (ENSHBUG00000012629)	tdrd6 (ENSHBUG00000012579)	sf3b6 (ENSHBUG00000012556)	vsnl1a (ENSHBUG00000012542)	fam49a (ENSHBUG00000012532)	fbxo16 (ENSHBUG00000012505)	fzd3a (ENSHBUG00000012457)	cdc42bpab (ENSHBUG00000000350) #10	lft1 (ENSHBUG00000000814) #22	hnrnpub (ENSHBUG00000012290)	ENSHBUG00000012254	cnstb (ENSHBUG00000012245)	ENSHBUG00000012237	snap25a (ENSHBUG00000012144)	ankef1a (ENSHBUG00000012124)	emilin1a (ENSHBUG00000012025)	stmn4 (ENSHBUG00000011752)	ENSHBUG00000011737	mcm3 (ENSHBUG00000011722)	paqr8 (ENSHBUG00000011665)	znf395b (ENSHBUG00000011443)	pnocb (ENSHBUG00000011424)	si:ch211-63o20.7 (ENSHBUG00000011405)	elp3 (ENSHBUG00000011383)
Lyretail cichlid	MODERN SPECIES	316	zgc:153383 (ENSNBRG00000018391)	flrt2 (ENSNBRG00000018372)	ENSNBRG00000018360	SERPINA4 (ENSNBRG00000018355)	prkrip1 (ENSNBRG00000018332)	ints9 (ENSNBRG00000018303)	pla2g7 (ENSNBRG00000018273)	tdrd6 (ENSNBRG00000018258)	sf3b6 (ENSNBRG00000018244)	vsnl1a (ENSNBRG00000018237)	fam49a (ENSNBRG00000018205)	fbxo16 (ENSNBRG00000018191)	ENSNBRG00000018181	ARPC5 (ENSNBRG00000018168)	cdc42bpab (ENSNBRG00000018000) #10	lft1 (ENSNBRG00000017915) #22	hnrnpub (ENSNBRG00000017855)	ENSNBRG00000017796	ENSNBRG00000017762	snap25a (ENSNBRG00000017728)	ankef1a (ENSNBRG00000017686)	emilin1a (ENSNBRG00000017653)	stmn4 (ENSNBRG00000017485)	ENSNBRG00000017430	mcm3 (ENSNBRG00000017357)	paqr8 (ENSNBRG00000017333)	znf395b (ENSNBRG00000017316)	pnocb (ENSNBRG00000017299)	si:ch211-63o20.7 (ENSNBRG00000017284)
Nile tilapia	MODERN SPECIES	6	ENSONIG00000042314	clmnb (ENSONIG00000029179)	ENSONIG00000030358	prkrip1 (ENSONIG00000020920)	glrx5 (ENSONIG00000001199)	ints9 (ENSONIG00000001202)	pla2g7 (ENSONIG00000001212)	ENSONIG00000027917	tdrd6 (ENSONIG00000001218)	sf3b6 (ENSONIG00000040116)	VSNL1 (ENSONIG00000001225)	fam49a (ENSONIG00000001228)	fbxo16 (ENSONIG00000001230)	fzd3a (ENSONIG00000001234)	cdc42bpab (ENSONIG00000001238) #10	lft1 (ENSONIG00000001253) #22	hnrnpub (ENSONIG00000001260)	ENSONIG00000001269	cnstb (ENSONIG00000032036)	he1.2 (ENSONIG00000037262)	snap25a (ENSONIG00000001276)	ankef1a (ENSONIG00000001282)	emilin1a (ENSONIG00000001290)	stmn4 (ENSONIG00000001293)	ENSONIG00000001294	mcm3 (ENSONIG00000001295)	paqr8 (ENSONIG00000020922)	znf395b (ENSONIG00000036384)	pnocb (ENSONIG00000040429)	si:ch211-63o20.7 (ENSONIG00000001306)	elp3 (ENSONIG00000001307)
Midas cichlid	MODERN SPECIES	711	flrt2 (ENSACIG00000012909)	serpina1l (ENSACIG00000012825)	ENSACIG00000012793	prkrip1 (ENSACIG00000012768)	glrx5 (ENSACIG00000012724)	ints9 (ENSACIG00000012679)	pla2g7 (ENSACIG00000012654)	ENSACIG00000012633	ENSACIG00000012623	sf3b6 (ENSACIG00000012608)	vsnl1a (ENSACIG00000012597)	fam49a (ENSACIG00000012571)	fbxo16 (ENSACIG00000012556)	fzd3a (ENSACIG00000012531)	cdc42bpab (ENSACIG00000012444) #10	lft1 (ENSACIG00000012429) #22	hnrnpub (ENSACIG00000012138)	ENSACIG00000012055	cnstb (ENSACIG00000012033)	ENSACIG00000012004	snap25a (ENSACIG00000011995)	HMBOX1 (ENSACIG00000011971)	disp1 (ENSACIG00000011853)	TLR5 (ENSACIG00000011731)	ENSACIG00000011715	ENSACIG00000011702	ENSACIG00000011696	brox (ENSACIG00000011669)	ENSACIG00000011649	mep1a.1 (ENSACIG00000011626)	mep1a.2 (ENSACIG00000011571)
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937
Tetraodontidae	ANCESTRAL SPECIES	15	ENSGT00550000074807.d.a.a	ENSGT00390000016736.a.j	ENSGT00940000158937.b	ENSGT00940000160877.h	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000159075.B	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000162581	ENSGT01050000244879.b.a.b.b	ENSGT00530000063353.a.b.a	ENSGT00940000155208.b	ENSGT00940000155089.r.b	ENSGT00940000155089.r.a	ENSGT00390000013943	ENSGT00940000154856.B.d	ENSGT00990000203619.A.b.b.a.g	ENSGT00990000203619.A.b.b.a.h
Fugu	MODERN SPECIES	7	flrt2 (ENSTRUG00000005506)	flrt2 (ENSTRUG00000032580)	serpina1l (ENSTRUG00000005548)	ENSTRUG00000024190	ENSTRUG00000030778	prkrip1 (ENSTRUG00000005932)	glrx5 (ENSTRUG00000021703)	ENSTRUG00000030053	ENSTRUG00000031160	ints9 (ENSTRUG00000006014)	sf3b6 (ENSTRUG00000025286)	vsnl1a (ENSTRUG00000022140)	fam49a (ENSTRUG00000006726)	fzd3a (ENSTRUG00000031124)	cdc42bpab (ENSTRUG00000007283) #10	lft1 (ENSTRUG00000007659) #22	hnrnpub (ENSTRUG00000007759)	ENSTRUG00000029286	cnstb (ENSTRUG00000021404)	snap25a (ENSTRUG00000008313)	tdrd15 (ENSTRUG00000008435)	rfx6 (ENSTRUG00000008447)	vgll2a (ENSTRUG00000008567)	slc22a2 (ENSTRUG00000022622)	slc22a2 (ENSTRUG00000008932)	igf2r (ENSTRUG00000009213)	ENSTRUG00000020488	plg (ENSTRUG00000008578)	ENSTRUG00000010359	GPR31 (ENSTRUG00000022624)	ENSTRUG00000027031
Tetraodon	MODERN SPECIES	5	psma6b (ENSTNIG00000009709)	zgc:153383 (ENSTNIG00000009710)	flrt2 (ENSTNIG00000009711)	serpina1l (ENSTNIG00000009712)	ENSTNIG00000009713	ENSTNIG00000009714	prkrip1 (ENSTNIG00000009715)	glrx5 (ENSTNIG00000009716)	ints9 (ENSTNIG00000009717)	pla2g7 (ENSTNIG00000009718)	sf3b6 (ENSTNIG00000009719)	vsnl1a (ENSTNIG00000009720)	fam49a (ENSTNIG00000009721)	ENSTNIG00000009722	cdc42bpab (ENSTNIG00000009723) #10	lft1 (ENSTNIG00000009724) #22	hnrnpub (ENSTNIG00000009725)	ENSTNIG00000009726	snap25a (ENSTNIG00000009727)	tdrd15 (ENSTNIG00000000258)	rfx6 (ENSTNIG00000009728)	vgll2a (ENSTNIG00000009729)	plg (ENSTNIG00000009730)	slc22a2 (ENSTNIG00000000453)	slc22a2 (ENSTNIG00000000787)	slc22a2 (ENSTNIG00000009731)	slc22a2 (ENSTNIG00000009732)	slc22a2 (ENSTNIG00000009733)	igf2r (ENSTNIG00000009734)	ENSTNIG00000009735	ENSTNIG00000001141
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937
Ballan wrasse	MODERN SPECIES	41		ENSLBEG00000023148	SERPINA4 (ENSLBEG00000023129)	ENSLBEG00000023109	prkrip1 (ENSLBEG00000023056)	glrx5 (ENSLBEG00000023044)	ints9 (ENSLBEG00000023003)	pla2g7 (ENSLBEG00000022973)	tdrd6 (ENSLBEG00000022955)	sf3b6 (ENSLBEG00000022937)	vsnl1a (ENSLBEG00000022928)	fam49a (ENSLBEG00000022873)	fbxo16 (ENSLBEG00000022850)	fzd3a (ENSLBEG00000022728)	cdc42bpab (ENSLBEG00000022609) #10	lft1 (ENSLBEG00000022573) #22	hnrnpub (ENSLBEG00000022520)	ENSLBEG00000022484	cnstb (ENSLBEG00000022460)	ENSLBEG00000022446	sccpdhb (ENSLBEG00000022425)	snap25a (ENSLBEG00000022394)	ankef1a (ENSLBEG00000022262)	emilin1a (ENSLBEG00000022192)	stmn4 (ENSLBEG00000022173)	ENSLBEG00000022137	mcm3 (ENSLBEG00000022065)	paqr8 (ENSLBEG00000022027)	znf395b (ENSLBEG00000022000)	pnocb (ENSLBEG00000021986)	si:ch211-63o20.7 (ENSLBEG00000021971)
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937
Perciformes	ANCESTRAL SPECIES	14	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00980000199001	ENSGT01030000235230	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937
Cottioidei	ANCESTRAL SPECIES	28	ENSGT00940000158937.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00980000199001	ENSGT01030000235230	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f
Lumpfish	MODERN SPECIES	16	flrt2 (ENSCLMG00005005904)	serpina1l (ENSCLMG00005005833)	ENSCLMG00005005830	clmnb (ENSCLMG00005005828)	prkrip1 (ENSCLMG00005005825)	glrx5 (ENSCLMG00005005824)	ints9 (ENSCLMG00005003240)	pla2g7 (ENSCLMG00005003171)	tdrd6 (ENSCLMG00005003166)	sf3b6 (ENSCLMG00005003164)	vsnl1a (ENSCLMG00005003163)	fam49a (ENSCLMG00005002940)	fbxo16 (ENSCLMG00005002871)	fzd3a (ENSCLMG00005002830)	cdc42bpab (ENSCLMG00005020405) #10	lft1 (ENSCLMG00005020334) #22	hnrnpub (ENSCLMG00005020305)	ENSCLMG00005020301	snap25a (ENSCLMG00005020299)	ankef1a (ENSCLMG00005020291)	emilin1a (ENSCLMG00005020290)	stmn4 (ENSCLMG00005020288)	ENSCLMG00005020285	mcm3 (ENSCLMG00005020280)	znf395b (ENSCLMG00005020277)	pnocb (ENSCLMG00005020276)	si:ch211-63o20.7 (ENSCLMG00005020275)	elp3 (ENSCLMG00005020255)	KIF13B (ENSCLMG00005020093)	HMBOX1 (ENSCLMG00005020065)	disp1 (ENSCLMG00005020064)
Stickleback	MODERN SPECIES	18	zgc:153383 (ENSGACG00000005017)	flrt2 (ENSGACG00000005013)	serpina1l (ENSGACG00000004940)	prkrip1 (ENSGACG00000004935)	glrx5 (ENSGACG00000004913)	ints9 (ENSGACG00000004893)	pla2g7 (ENSGACG00000004825)	tdrd6 (ENSGACG00000004820)	sf3b6 (ENSGACG00000004803)	vsnl1a (ENSGACG00000004784)	fam49a (ENSGACG00000004727)	ENSGACG00000004726	fbxo16 (ENSGACG00000004722)	fzd3a (ENSGACG00000004714)	cdc42bpab (ENSGACG00000004707) #10	lft1 (ENSGACG00000004693) #22	hnrnpub (ENSGACG00000004679)	ENSGACG00000004668	ENSGACG00000004658	ENSGACG00000004657	ENSGACG00000004653	ENSGACG00000004618	snap25a (ENSGACG00000004546)	ankef1a (ENSGACG00000004520)	emilin1a (ENSGACG00000004508)	stmn4 (ENSGACG00000004482)	mcm3 (ENSGACG00000004469)	znf395b (ENSGACG00000004464)	pnocb (ENSGACG00000004461)	si:ch211-63o20.7 (ENSGACG00000004453)	elp3 (ENSGACG00000004427)
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b
Channel bull blenny	MODERN SPECIES	16	flrt2 (ENSCGOG00000016526)	ENSCGOG00000016532	ENSCGOG00000016645	ENSCGOG00000016647	ENSCGOG00000016653	prkrip1 (ENSCGOG00000016656)	glrx5 (ENSCGOG00000016659)	ints9 (ENSCGOG00000016684)	pla2g7 (ENSCGOG00000017181)	tdrd6 (ENSCGOG00000017316)	sf3b6 (ENSCGOG00000017320)	VSNL1 (ENSCGOG00000017323)	fam49a (ENSCGOG00000017328)	fbxo16 (ENSCGOG00000017358)	cdc42bpab (ENSCGOG00000017526) #10	lft1 (ENSCGOG00000022197) #22	hnrnpub (ENSCGOG00000022201)	ENSCGOG00000022216	cnstb (ENSCGOG00000022223)	sccpdhb (ENSCGOG00000022232)	snap25a (ENSCGOG00000002816)	ENSCGOG00000002918	ankef1a (ENSCGOG00000002928)	emilin1a (ENSCGOG00000002936)	stmn4 (ENSCGOG00000002938)	il17a/f3 (ENSCGOG00000002946)	mcm3 (ENSCGOG00000002993)	paqr8 (ENSCGOG00000003937)	znf395b (ENSCGOG00000003942)	pnocb (ENSCGOG00000003945)	si:ch211-63o20.7 (ENSCGOG00000003948)
Pike perch	MODERN SPECIES	129		ENSSLUG00000012123	SERPINA4 (ENSSLUG00000012128)	prkrip1 (ENSSLUG00000012139)	glrx5 (ENSSLUG00000012143)	ints9 (ENSSLUG00000012161)	pla2g7 (ENSSLUG00000012216)	tdrd6 (ENSSLUG00000012258)	sf3b6 (ENSSLUG00000012269)	vsnl1a (ENSSLUG00000012273)	ENSSLUG00000012279	fam49a (ENSSLUG00000012296)	fbxo16 (ENSSLUG00000012553)	fzd3a (ENSSLUG00000012560)	cdc42bpab (ENSSLUG00000012618) #10	lft1 (ENSSLUG00000012848) #22	hnrnpub (ENSSLUG00000012886)	ENSSLUG00000013010	ENSSLUG00000013024	ENSSLUG00000013030	ENSSLUG00000013036	sccpdhb (ENSSLUG00000013041)	ENSSLUG00000013049	snap25a (ENSSLUG00000013056)	ankef1a (ENSSLUG00000013081)	emilin1a (ENSSLUG00000013089)	stmn4 (ENSSLUG00000013099)	ENSSLUG00000013112	mcm3 (ENSSLUG00000013146)	paqr8 (ENSSLUG00000013262)	znf395b (ENSSLUG00000013264)
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00940000158937.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937
Gilthead seabream	MODERN SPECIES	14	serpina1l (ENSSAUG00010011214)	ENSSAUG00010011215	ENSSAUG00010011216	prkrip1 (ENSSAUG00010011218)	glrx5 (ENSSAUG00010011219)	ints9 (ENSSAUG00010011220)	pla2g7 (ENSSAUG00010011236)	tdrd6 (ENSSAUG00010011244)	sf3b6 (ENSSAUG00010011245)	vsnl1a (ENSSAUG00010011247)	fam49a (ENSSAUG00010011251)	fbxo16 (ENSSAUG00010011755)	fzd3a (ENSSAUG00010011760)	cdc42bpab (ENSSAUG00010011853) #10	ENSSAUG00010016609	lft1 (ENSSAUG00010016610) #22	hnrnpub (ENSSAUG00010016615)	ENSSAUG00010016648	cnstb (ENSSAUG00010016650)	sccpdhb (ENSSAUG00010016662)	snap25a (ENSSAUG00010017119)	ankef1a (ENSSAUG00010017130)	emilin1a (ENSSAUG00010017133)	si:ch211-63o20.7 (ENSSAUG00010017137)	ENSSAUG00010017139	mcm3 (ENSSAUG00010017176)	znf395b (ENSSAUG00010017431)	pnocb (ENSSAUG00010017434)	elp3 (ENSSAUG00010017444)	KIF13B (ENSSAUG00010017552)	HMBOX1 (ENSSAUG00010020875)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00940000158937.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Large yellow croaker	MODERN SPECIES	482	dnm1b (ENSLCRG00005001285)	ENSLCRG00005007661	pomt1 (ENSLCRG00005007669)	ENSLCRG00005008077	snapc4 (ENSLCRG00005008078)	ENSLCRG00005008079	ENSLCRG00005008082	gopc (ENSLCRG00005008086)	ENSLCRG00005008096	sf3b6 (ENSLCRG00005008098)	vsnl1a (ENSLCRG00005008100)	fam49a (ENSLCRG00005008104)	fbxo16 (ENSLCRG00005008133)	fzd3a (ENSLCRG00005008135)	cdc42bpab (ENSLCRG00005008268) #10	lft1 (ENSLCRG00005020460) #22	hnrnpub (ENSLCRG00005020466)	ENSLCRG00005020666	ENSLCRG00005020667	cnstb (ENSLCRG00005020670)	snap25a (ENSLCRG00005020677)	ankef1a (ENSLCRG00005020693)	emilin1a (ENSLCRG00005020694)	stmn4 (ENSLCRG00005020695)	il17a/f3 (ENSLCRG00005020696)	mcm3 (ENSLCRG00005020698)	paqr8 (ENSLCRG00005020699)	znf395b (ENSLCRG00005020700)	pnocb (ENSLCRG00005020701)	si:ch211-63o20.7 (ENSLCRG00005020703)	elp3 (ENSLCRG00005020704)
European seabass	MODERN SPECIES	7	serpina1l (ENSDLAG00005016069)	ENSDLAG00005034336	ENSDLAG00005016037	ENSDLAG00005029987	glrx5 (ENSDLAG00005016017)	ENSDLAG00005015287	ENSDLAG00005015263	tdrd6 (ENSDLAG00005015258)	ENSDLAG00005034488	ENSDLAG00005033766	vsnl1a (ENSDLAG00005032329)	ENSDLAG00005015016	fbxo16 (ENSDLAG00005014987)	fzd3a (ENSDLAG00005014961)	cdc42bpab (ENSDLAG00005001801) #10	lft1 (ENSDLAG00005001061) #22	hnrnpub (ENSDLAG00005001043)	ENSDLAG00005001037	ENSDLAG00005001031	cnstb (ENSDLAG00005028602)	sccpdhb (ENSDLAG00005000966)	snap25a (ENSDLAG00005000946)	ankef1a (ENSDLAG00005000937)	emilin1a (ENSDLAG00005000932)	stmn4 (ENSDLAG00005000928)	ENSDLAG00005000925	mcm3 (ENSDLAG00005000903)	znf395b (ENSDLAG00005000893)	si:ch211-63o20.7 (ENSDLAG00005000871)	elp3 (ENSDLAG00005028766)	ENSDLAG00005000329
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Carangaria	ANCESTRAL SPECIES	18	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Barramundi perch	MODERN SPECIES	126	flrt2 (ENSLCAG00010004299)	ENSLCAG00010004304	ENSLCAG00010004306	ENSLCAG00010004309	prkrip1 (ENSLCAG00010004317)	glrx5 (ENSLCAG00010004318)	ints9 (ENSLCAG00010004329)	pla2g7 (ENSLCAG00010004359)	ENSLCAG00010004395	sf3b6 (ENSLCAG00010004406)	vsnl1a (ENSLCAG00010004412)	fam49a (ENSLCAG00010004431)	fbxo16 (ENSLCAG00010004458)	fzd3a (ENSLCAG00010004464)	cdc42bpab (ENSLCAG00010004587) #10	lft1 (ENSLCAG00010005297) #22	hnrnpub (ENSLCAG00010005315)	ENSLCAG00010005369	cnstb (ENSLCAG00010005375)	sccpdhb (ENSLCAG00010005391)	snap25a (ENSLCAG00010005413)	ankef1a (ENSLCAG00010005442)	emilin1a (ENSLCAG00010005443)	stmn4 (ENSLCAG00010005448)	ENSLCAG00010005449	mcm3 (ENSLCAG00010005468)	paqr8 (ENSLCAG00010005512)	znf395b (ENSLCAG00010005513)	pnocb (ENSLCAG00010005519)	si:ch211-63o20.7 (ENSLCAG00010005523)	elp3 (ENSLCAG00010005534)
Seriola	ANCESTRAL SPECIES	4	ENSGT00940000160877.g.b.e.b	ENSGT00940000160877.g.a	ENSGT00940000159462.b	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00940000163960.b	ENSGT01100000263671	ENSGT00940000177235	ENSGT00940000177326
Yellowtail amberjack	MODERN SPECIES	3189	SERPINA4 (ENSSLDG00000004025)	ENSSLDG00000004077	ENSSLDG00000004276	ENSSLDG00000004283	prkrip1 (ENSSLDG00000004322)	glrx5 (ENSSLDG00000004359)	ints9 (ENSSLDG00000004386)	pla2g7 (ENSSLDG00000004445)	tdrd6 (ENSSLDG00000004470)	sf3b6 (ENSSLDG00000004494)	vsnl1a (ENSSLDG00000004517)	fam49a (ENSSLDG00000004552)	fbxo16 (ENSSLDG00000004622)	fzd3a (ENSSLDG00000004639)	cdc42bpab (ENSSLDG00000004690) #10	lft1 (ENSSLDG00000004819) #22	hnrnpub (ENSSLDG00000004899)	ENSSLDG00000004961	cnstb (ENSSLDG00000004976)	sccpdhb (ENSSLDG00000005004)	snap25a (ENSSLDG00000005036)	ankef1a (ENSSLDG00000005191)	emilin1a (ENSSLDG00000005310)	ccdc25 (ENSSLDG00000005342)	ESCO2 (ENSSLDG00000005387)	pbk (ENSSLDG00000005406)	scara5 (ENSSLDG00000005438)	ENSSLDG00000005469	ENSSLDG00000005483	ENSSLDG00000005498	GNPAT (ENSSLDG00000005511)
Greater amberjack	MODERN SPECIES	10	ENSSDUG00000006798	ENSSDUG00000006794	ENSSDUG00000006778	ENSSDUG00000006761	prkrip1 (ENSSDUG00000006727)	glrx5 (ENSSDUG00000006717)	ints9 (ENSSDUG00000006662)	pla2g7 (ENSSDUG00000006633)	tdrd6 (ENSSDUG00000006559)	sf3b6 (ENSSDUG00000006538)	vsnl1a (ENSSDUG00000006520)	fam49a (ENSSDUG00000006465)	fbxo16 (ENSSDUG00000006444)	fzd3a (ENSSDUG00000006414)	cdc42bpab (ENSSDUG00000006033) #10	lft1 (ENSSDUG00000005938) #22	hnrnpub (ENSSDUG00000005912)	ENSSDUG00000005888	cnstb (ENSSDUG00000005871)	sccpdhb (ENSSDUG00000005787)	snap25a (ENSSDUG00000005763)	ankef1a (ENSSDUG00000005717)	emilin1a (ENSSDUG00000005684)	ccdc25 (ENSSDUG00000005633)	esco2 (ENSSDUG00000005598)	pbk (ENSSDUG00000005574)	scara5 (ENSSDUG00000005539)	ENSSDUG00000005530	ENSSDUG00000005524	ENSSDUG00000005512	ENSSDUG00000005503
Pleuronectoidei	ANCESTRAL SPECIES	46													ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00390000013141	ENSGT00940000155500.f
Tongue sole	MODERN SPECIES	24													fbxo16 (ENSCSEG00000010900)	fzd3a (ENSCSEG00000010870)	cdc42bpab (ENSCSEG00000010828) #10	lft1 (ENSCSEG00000010820) #22	hnrnpub (ENSCSEG00000010804)	ENSCSEG00000010789	cnstb (ENSCSEG00000010773)	snap25a (ENSCSEG00000010748)	ankef1a (ENSCSEG00000010701)	emilin1a (ENSCSEG00000010674)	stmn4 (ENSCSEG00000010659)	il17a/f3 (ENSCSEG00000010649)	mcm3 (ENSCSEG00000010629)	paqr8 (ENSCSEG00000010624)	znf395b (ENSCSEG00000010616)	ENSCSEG00000010612	si:ch211-63o20.7 (ENSCSEG00000010600)	elp3 (ENSCSEG00000010569)	KIF13B (ENSCSEG00000010536)
Turbot	MODERN SPECIES	12	nrxn3b (ENSSMAG00000004117)	snw1 (ENSSMAG00000004061)	sptlc2b (ENSSMAG00000004048)	ism2b (ENSSMAG00000028217)	cyp46a1.4 (ENSSMAG00000003961)	ccdc85cb (ENSSMAG00000003921)	ccnk (ENSSMAG00000003887)	ENSSMAG00000022464	ENSSMAG00000003839	ENSSMAG00000003828	ENSSMAG00000003785	fbxo16 (ENSSMAG00000003762)	fzd3a (ENSSMAG00000003731)	ENSSMAG00000026000	cdc42bpab (ENSSMAG00000003667) #10	lft1 (ENSSMAG00000003629) #22	hnrnpub (ENSSMAG00000003607)	ENSSMAG00000003590	cnstb (ENSSMAG00000003574)	sccpdhb (ENSSMAG00000003507)	snap25a (ENSSMAG00000003362)	ankef1a (ENSSMAG00000003325)	emilin1a (ENSSMAG00000003273)	stmn4 (ENSSMAG00000037598)	ENSSMAG00000003245	mcm3 (ENSSMAG00000003130)	paqr8 (ENSSMAG00000003117)	znf395b (ENSSMAG00000003089)	si:ch211-63o20.7 (ENSSMAG00000003079)	pnocb (ENSSMAG00000003062)	ELP3 (ENSSMAG00000002962)
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00940000158937.b	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Zig-zag eel	MODERN SPECIES	16	ENSMAMG00000007905	ENSMAMG00000007900	ENSMAMG00000026750	ENSMAMG00000007826	glrx5 (ENSMAMG00000007846)	ENSMAMG00000007772	ENSMAMG00000007737	tdrd6 (ENSMAMG00000007725)	ENSMAMG00000007713	VSNL1 (ENSMAMG00000024490)	ENSMAMG00000026352	fbxo16 (ENSMAMG00000028207)	fzd3a (ENSMAMG00000007585)	ENSMAMG00000025640	cdc42bpab (ENSMAMG00000007328) #10	lft1 (ENSMAMG00000007252) #22	hnrnpub (ENSMAMG00000007196)	cnstb (ENSMAMG00000007139)	snap25a (ENSMAMG00000007092)	ankef1a (ENSMAMG00000007059)	emilin1a (ENSMAMG00000007042)	ENSMAMG00000027512	stmn4 (ENSMAMG00000007012)	ENSMAMG00000007001	mcm3 (ENSMAMG00000006953)	paqr8 (ENSMAMG00000006934)	znf395b (ENSMAMG00000006924)	pnocb (ENSMAMG00000006903)	si:ch211-63o20.7 (ENSMAMG00000006887)	elp3 (ENSMAMG00000006874)	ENSMAMG00000006450
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000158937.b	ENSGT00940000160877.g.b	ENSGT00940000160877.g.a	ENSGT00940000159056.g	ENSGT00390000005003	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141
Siamese fighting fish	MODERN SPECIES	13	psma6b (ENSBSLG00000021946)	zgc:153383 (ENSBSLG00000021923)	flrt2 (ENSBSLG00000021911)	serpina1l (ENSBSLG00000021749)	prkrip1 (ENSBSLG00000021718)	glrx5 (ENSBSLG00000021696)	ints9 (ENSBSLG00000021460)	pla2g7 (ENSBSLG00000021393)	tdrd6 (ENSBSLG00000021359)	sf3b6 (ENSBSLG00000021343)	VSNL1 (ENSBSLG00000021332)	fam49a (ENSBSLG00000021236)	fbxo16 (ENSBSLG00000021164)	fzd3a (ENSBSLG00000021061)	cdc42bpab (ENSBSLG00000013848) #10	lft1 (ENSBSLG00000013468) #22	hnrnpub (ENSBSLG00000013195)	ENSBSLG00000012187	cnstb (ENSBSLG00000012126)	snap25a (ENSBSLG00000011993)	ankef1a (ENSBSLG00000011931)	emilin1a (ENSBSLG00000011916)	ENSBSLG00000011863	ENSBSLG00000011894	ENSBSLG00000011844	ENSBSLG00000011717	ENSBSLG00000011653	stmn4 (ENSBSLG00000011614)	il17a/f3 (ENSBSLG00000011580)	mcm3 (ENSBSLG00000010778)	paqr8 (ENSBSLG00000010652)
Climbing perch	MODERN SPECIES	15	ENSATEG00000017176	ENSATEG00000017152	ENSATEG00000030123	clmnb (ENSATEG00000016718)	ENSATEG00000016695	glrx5 (ENSATEG00000029839)	ENSATEG00000016623	ENSATEG00000016596	tdrd6 (ENSATEG00000016586)	ENSATEG00000027650	VSNL1 (ENSATEG00000029333)	ENSATEG00000016512	fbxo16 (ENSATEG00000016459)	fzd3a (ENSATEG00000016313)	cdc42bpab (ENSATEG00000016212) #10	lft1 (ENSATEG00000016192) #22	hnrnpub (ENSATEG00000016178)	ENSATEG00000027762	ENSATEG00000016123	cnstb (ENSATEG00000016109)	snap25a (ENSATEG00000016086)	ankef1a (ENSATEG00000015998)	emilin1a (ENSATEG00000015971)	ENSATEG00000015923	stmn4 (ENSATEG00000027591)	mcm3 (ENSATEG00000015894)	paqr8 (ENSATEG00000015880)	znf395b (ENSATEG00000015873)	pnocb (ENSATEG00000027895)	si:ch211-63o20.7 (ENSATEG00000015842)	elp3 (ENSATEG00000015813)
Pinecone sodierfish	MODERN SPECIES	16	zgc:153383 (ENSMMDG00005009607)	flrt2 (ENSMMDG00005009606)	serpina1l (ENSMMDG00005009559)	ENSMMDG00005009557	prkrip1 (ENSMMDG00005009554)	glrx5 (ENSMMDG00005009553)	ints9 (ENSMMDG00005008896)	pla2g7 (ENSMMDG00005008876)	tdrd6 (ENSMMDG00005008870)	sf3b6 (ENSMMDG00005008867)	vsnl1a (ENSMMDG00005008866)	fam49a (ENSMMDG00005008220)	fbxo16 (ENSMMDG00005008194)	fzd3a (ENSMMDG00005008184)	cdc42bpab (ENSMMDG00005005174) #10	lft1 (ENSMMDG00005004998) #22	hnrnpub (ENSMMDG00005002655)	ENSMMDG00005002548	ENSMMDG00005016274	sccpdhb (ENSMMDG00005016214)	snap25a (ENSMMDG00005016197)	ankef1a (ENSMMDG00005016192)	emilin1a (ENSMMDG00005016185)	stmn4 (ENSMMDG00005016183)	ENSMMDG00005016180	mcm3 (ENSMMDG00005016110)	paqr8 (ENSMMDG00005016096)	znf395b (ENSMMDG00005016094)	pnocb (ENSMMDG00005016093)	si:ch211-63o20.7 (ENSMMDG00005016091)	elp3 (ENSMMDG00005015987)
Cod	MODERN SPECIES	13	CEP128 (ENSGMOG00000015925)	tshr (ENSGMOG00000015887)	gtf2a1 (ENSGMOG00000015861)	ches1 (ENSGMOG00000022839)	kcnk13b (ENSGMOG00000027682)	psmc1b (ENSGMOG00000009350)	ENSGMOG00000036333	ENSGMOG00000009332	nfkbiaa (ENSGMOG00000009326)	psma6b (ENSGMOG00000009319)	ENSGMOG00000009312	ENSGMOG00000034228	fbxo16 (ENSGMOG00000006779)	fzd3a (ENSGMOG00000036153)	cdc42bpab (ENSGMOG00000004971) #10	lft1 (ENSGMOG00000026818) #22	hnrnpub (ENSGMOG00000001755)	ENSGMOG00000025770	ENSGMOG00000036691	cnstb (ENSGMOG00000024227)	sccpdhb (ENSGMOG00000036474)	ENSGMOG00000004734	e2f6 (ENSGMOG00000027601)	ENSGMOG00000024240	cpsf3 (ENSGMOG00000003157)	ADAM17 (ENSGMOG00000003189)	ENSGMOG00000014302	ENSGMOG00000024314	taf1b (ENSGMOG00000035265)	klf11a (ENSGMOG00000034525)	RRM2 (ENSGMOG00000025006)
Protacanthopterygii	ANCESTRAL SPECIES	151				ENSGT00940000158937.b	ENSGT00940000160877	ENSGT00550000075082	ENSGT00390000001445	ENSGT00390000005233.b	ENSGT00940000159049.a	ENSGT00390000005908	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b	ENSGT00940000159021	ENSGT00940000156491.a	ENSGT01030000234517.H.b #10	ENSGT00390000010056.b #22	ENSGT00940000156546.`b.a	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01060000248799.b	ENSGT00940000157766.b.b	ENSGT00940000159694.b	ENSGT00940000154482.b.b.a.d	ENSGT01030000234620.a.a.a.a.a.a	ENSGT01020000230401.a.a.b.a.a	ENSGT01020000230401.a.a.b.a.b	ENSGT00390000007686.b.c.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	199												ENSGT00390000015159.a.b.e	ENSGT00940000159021	ENSGT00940000156491.a.g.a	ENSGT01030000234517.H.b.j.a #10	ENSGT00390000010056.b.e #22	ENSGT00940000156546.`b.a.e	ENSGT00940000174980	ENSGT00940000156992.e	ENSGT00390000005861.a	ENSGT00390000004799.bc.a	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00940000156852.d	ENSGT00940000157766.b.b.g	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT01020000230401.a.a.b.a.a.b	ENSGT01020000230401.a.a.b.a.b	ENSGT00390000007686.b.c.a.e	ENSGT00390000007341.a.j	ENSGT00940000161931.hb
Salmoninae_a	ANCESTRAL SPECIES	23	ENSGT00940000155671.y.b.c.a	ENSGT00390000003466.o	ENSGT00390000014122.b.a	ENSGT00390000001793	ENSGT00940000158937.b.e	ENSGT00940000160877.j	ENSGT00550000075082.m	ENSGT00390000001445.c	ENSGT00390000005233.b.e	ENSGT00390000005908.d	ENSGT00940000156513.a.b.c	ENSGT00390000015159.a.b.e	ENSGT00940000159021	ENSGT00940000156491.a.g.a	ENSGT01030000234517.H.b.j.a #10	ENSGT00390000010056.b.e #22	ENSGT00940000156546.`b.a.e	ENSGT00940000156992.e	ENSGT00390000005861.a.c	ENSGT00390000004799.bc.a	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00940000156852.d	ENSGT00940000157766.b.b.g	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT01020000230401.a.a.b.a.a.b	ENSGT01020000230401.a.a.b.a.b	ENSGT00390000007686.b.c.a.e	ENSGT00390000007341.a.j	ENSGT00940000161931.hb	ENSGT00940000155369.A.d.b.c
Salmo	ANCESTRAL SPECIES	26	ENSGT00390000007441.g	ENSGT00940000155671.y.b.c.a	ENSGT00390000003466.o	ENSGT00390000014122.b.a	ENSGT00390000001793	ENSGT00940000158937.b.e	ENSGT00550000075082.m	ENSGT00390000001445.c	ENSGT00390000005233.b.e	ENSGT00390000005908.d	ENSGT00940000156513.a.b.c	ENSGT00390000015159.a.b.e	ENSGT00940000159021	ENSGT00940000156491.a.g.a	ENSGT01030000234517.H.b.j.a #10	ENSGT00390000010056.b.e #22	ENSGT00940000156546.`b.a.e	ENSGT00940000156992.e	ENSGT00390000005861.a.c	ENSGT00390000004799.bc.a	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00940000156852.d	ENSGT00940000157766.b.b.g	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT01020000230401.a.a.b.a.a.b	ENSGT01020000230401.a.a.b.a.b	ENSGT00390000007686.b.c.a.e	ENSGT00390000007341.a.j	ENSGT00940000161931.hb	ENSGT00940000155369.A.d.b.c
Atlantic salmon	MODERN SPECIES	6	myt1la (ENSSSAG00000039869)	rnaseh1 (ENSSSAG00000041963)	rps7 (ENSSSAG00000042048)	allc (ENSSSAG00000042108)	ENSSSAG00000120613	ENSSSAG00000118529	ENSSSAG00000084196	ENSSSAG00000042256	ENSSSAG00000044014	PM14 (ENSSSAG00000044070)	ENSSSAG00000108999	ENSSSAG00000044127	fbxo16 (ENSSSAG00000044237)	fzd3a (ENSSSAG00000044252)	cdc42bpab (ENSSSAG00000044396) #10	lft1 (ENSSSAG00000045961) #22	hnrnpub (ENSSSAG00000045985)	ENSSSAG00000046242	cnstb (ENSSSAG00000106067)	sccpdhb (ENSSSAG00000046257)	ENSSSAG00000046503	ankef1a (ENSSSAG00000046589)	slc25a29 (ENSSSAG00000046599)	ppp2r5cb (ENSSSAG00000046833)	hsp90aa1.2 (ENSSSAG00000063834)	hsp90aa1.1 (ENSSSAG00000120636)	ENSSSAG00000065380	mgat2 (ENSSSAG00000065470)	rps29 (ENSSSAG00000065477)	ENSSSAG00000065523	ENSSSAG00000066895
River trout	MODERN SPECIES	28	cep43 (ENSSTUG00000050141)	myt1la (ENSSTUG00000049826)	rnaseh1 (ENSSTUG00000049799)	rps7 (ENSSTUG00000049786)	allc (ENSSTUG00000049773)	ENSSTUG00000049769	flrt2 (ENSSTUG00000049768)	ints9 (ENSSTUG00000049753)	pla2g7 (ENSSTUG00000049730)	sf3b6 (ENSSTUG00000049724)	vsnl1a (ENSSTUG00000049721)	fam49a (ENSSTUG00000049712)	fbxo16 (ENSSTUG00000049708)	fzd3a (ENSSTUG00000049693)	cdc42bpab (ENSSTUG00000038977) #10	lft1 (ENSSTUG00000038621) #22	hnrnpub (ENSSTUG00000038557)	KIF26B (ENSSTUG00000038536)	cnstb (ENSSTUG00000038526)	sccpdhb (ENSSTUG00000038297)	snap25a (ENSSTUG00000038173)	ankef1a (ENSSTUG00000038153)	slc25a29 (ENSSTUG00000038134)	ENSSTUG00000038130	ENSSTUG00000038125	ppp2r5cb (ENSSTUG00000033989)	hsp90aa1.1 (ENSSTUG00000032559)	WDR20 (ENSSTUG00000032401)	ENSSTUG00000027971	mgat2 (ENSSTUG00000027960)	ENSSTUG00000027953
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT00940000155671.y.b.c.a	ENSGT00390000003466.o	ENSGT00390000014122.b.a	ENSGT00390000001793	ENSGT00940000158937.b.e	ENSGT00940000160877.j	ENSGT00550000075082.m	ENSGT00390000001445.c	ENSGT00390000005233.b.e	ENSGT00390000005908.d	ENSGT00940000156513.a.b.c	ENSGT00390000015159.a.b.e	ENSGT00940000159021	ENSGT00940000156491.a.g.a	ENSGT01030000234517.H.b.j.a #10	ENSGT00390000010056.b.e #22	ENSGT00940000156546.`b.a.e	ENSGT00940000156992.e	ENSGT00390000005861.a.c	ENSGT00390000004799.bc.a	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00940000156852.d	ENSGT00940000157766.b.b.g	ENSGT00940000154482.b.b.a.d.wb	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT01020000230401.a.a.b.a.a.b	ENSGT00390000007686.b.c.a.e	ENSGT00390000007341.a.j	ENSGT00940000161931.hb	ENSGT00940000155369.A.d.b.c
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000074248	ENSOMYG00000071871	ENSOMYG00000061530	ENSOMYG00000031958	ENSOMYG00000031976	ENSOMYG00000032061	ENSOMYG00000032127	ENSOMYG00000054940	ENSOMYG00000032172	ENSOMYG00000032180	ENSOMYG00000032410	fbxo16 (ENSOMYG00000033712)	fzd3a (ENSOMYG00000033717)	cdc42bpab (ENSOMYG00000033912) #10	ENSOMYG00000069165	lft1 (ENSOMYG00000035375) #22	hnrnpub (ENSOMYG00000035422)	ENSOMYG00000035566	cnstb (ENSOMYG00000066749)	sccpdhb (ENSOMYG00000035651)	ENSOMYG00000055832	ENSOMYG00000036183	ankef1a (ENSOMYG00000036250)	ENSOMYG00000036700	hsp90aa1.2 (ENSOMYG00000036907)	ppp2r5cb (ENSOMYG00000036431)	ENSOMYG00000068519	ENSOMYG00000036328	ENSOMYG00000073674	ENSOMYG00000068269	slc25a29 (ENSOMYG00000036313)
Oncorhynchus_a	ANCESTRAL SPECIES	17	ENSGT00940000155671.y.b.c.a	ENSGT00390000003466.o	ENSGT00390000014122.b.a	ENSGT00390000001793	ENSGT00940000158937.b.e	ENSGT00940000160877.j	ENSGT00550000075082.m	ENSGT00390000001445.c	ENSGT00390000005233.b.e	ENSGT00390000005908.d	ENSGT00940000156513.a.b.c	ENSGT00390000015159.a.b.e	ENSGT00940000159021	ENSGT00940000156491.a.g.a	ENSGT01030000234517.H.b.j.a #10	ENSGT00390000010056.b.e #22	ENSGT00940000156546.`b.a.e	ENSGT00940000156992.e	ENSGT00390000005861.a.c	ENSGT00390000004799.bc.a	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00940000156852.d	ENSGT00940000157766.b.b.g	ENSGT00940000154482.b.b.a.d.wb	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT01020000230401.a.a.b.a.a.b	ENSGT00390000007686.b.c.a.e	ENSGT00390000007341.a.j	ENSGT00940000161931.hb	ENSGT00940000155369.A.d.b.c
Coho salmon	MODERN SPECIES	3	ENSOKIG00005033084	myt1la (ENSOKIG00005033189)	rnaseh1 (ENSOKIG00005033389)	rps7 (ENSOKIG00005033479)	allc (ENSOKIG00005033586)	ENSOKIG00005033779	GLRX5 (ENSOKIG00005033883)	ints9 (ENSOKIG00005033927)	pla2g7 (ENSOKIG00005034911)	sf3b6 (ENSOKIG00005035101)	VSNL1 (ENSOKIG00005035186)	fam49a (ENSOKIG00005035227)	fbxo16 (ENSOKIG00005035322)	fzd3a (ENSOKIG00005035347)	cdc42bpab (ENSOKIG00005036375) #10	lft1 (ENSOKIG00005048753) #22	hnrnpub (ENSOKIG00005048760)	KIF26B (ENSOKIG00005048767)	cnstb (ENSOKIG00005048777)	sccpdhb (ENSOKIG00005048793)	snap25a (ENSOKIG00005048846)	ankef1a (ENSOKIG00005048864)	WDR20 (ENSOKIG00005048903)	hsp90aa1.2 (ENSOKIG00005049002)	ppp2r5cb (ENSOKIG00005049372)	ENSOKIG00005049428	ENSOKIG00005049430	ENSOKIG00005049432	slc25a29 (ENSOKIG00005049433)	mgat2 (ENSOKIG00005032816)	RPS29 (ENSOKIG00005032840)
Chinook salmon	MODERN SPECIES	29	myt1la (ENSOTSG00005000561)	rnaseh1 (ENSOTSG00005000566)	rps7 (ENSOTSG00005000569)	allc (ENSOTSG00005000583)	flrt2 (ENSOTSG00005000636)	ENSOTSG00005000637	glrx5 (ENSOTSG00005000642)	ints9 (ENSOTSG00005000669)	pla2g7 (ENSOTSG00005001621)	sf3b6 (ENSOTSG00005001845)	vsnl1a (ENSOTSG00005001857)	fam49a (ENSOTSG00005001874)	fbxo16 (ENSOTSG00005001900)	fzd3a (ENSOTSG00005001905)	cdc42bpab (ENSOTSG00005002384) #10	lft1 (ENSOTSG00005032479) #22	hnrnpub (ENSOTSG00005032480)	KIF26B (ENSOTSG00005032481)	sccpdhb (ENSOTSG00005032482)	snap25a (ENSOTSG00005032579)	ankef1a (ENSOTSG00005032580)	slc25a29 (ENSOTSG00005032586)	ENSOTSG00005032587	ppp2r5cb (ENSOTSG00005032589)	hsp90aa1.2 (ENSOTSG00005033077)	WDR20 (ENSOTSG00005034876)	mgat2 (ENSOTSG00005034892)	ENSOTSG00005034893	MDGA2 (ENSOTSG00005034899)	FKBP3 (ENSOTSG00005035745)	faua (ENSOTSG00005035746)
Huchen	MODERN SPECIES	493												fam49a (ENSHHUG00000052377)	fbxo16 (ENSHHUG00000052372)	fzd3a (ENSHHUG00000052370)	cdc42bpab (ENSHHUG00000051099) #10	lft1 (ENSHHUG00000051091) #22	hnrnpub (ENSHHUG00000051090)	ENSHHUG00000051089	ENSHHUG00000051082	sccpdhb (ENSHHUG00000051046)	ENSHHUG00000051044	snap25a (ENSHHUG00000051020)	ankef1a (ENSHHUG00000051014)	slc25a29 (ENSHHUG00000051009)	ENSHHUG00000051005	ENSHHUG00000051001	ppp2r5cb (ENSHHUG00000050963)	hsp90aa1.2 (ENSHHUG00000050772)	hsp90aa1.1 (ENSHHUG00000050418)	WDR20 (ENSHHUG00000050405)
Salmoninae	ANCESTRAL SPECIES	106	ENSGT00940000160877.i	ENSGT00550000075082.n	ENSGT00390000001445.d	ENSGT00390000005233.b.f	ENSGT00940000159049.a	ENSGT00390000005908.c	ENSGT00940000160877.j	ENSGT00550000075082.m	ENSGT00390000001445.c	ENSGT00390000005233.b.e	ENSGT00390000005908.d	ENSGT00940000156513.a.b	ENSGT00390000015159.a.b.f	ENSGT00940000156491.a.g.b	ENSGT01030000234517.H.b.j.b #10	ENSGT00390000010056.b.f #22	ENSGT00940000156546.`b.a.f
Huchen	MODERN SPECIES	1491												ENSHHUG00000036554	fam49a (ENSHHUG00000036446)	fzd3a (ENSHHUG00000036377)	cdc42bpab (ENSHHUG00000033122) #10	lft1 (ENSHHUG00000033101) #22	hnrnpub (ENSHHUG00000032765)	ENSHHUG00000032760	ENSHHUG00000032756
Salmoninae_a	ANCESTRAL SPECIES	30	ENSGT00940000155671.y.b.c.b	ENSGT00390000003466.p	ENSGT00390000014122.b.b	ENSGT00940000158937.b.f	ENSGT00940000160877.i	ENSGT00550000075082.n	ENSGT00390000001445.d	ENSGT00390000005233.b.f	ENSGT00940000159049.a	ENSGT00390000005908.c	ENSGT00940000156513.a.b.d	ENSGT01000000216711	ENSGT00390000015159.a.b.f	ENSGT00940000156491.a.g.b	ENSGT01030000234517.H.b.j.b #10	ENSGT00390000010056.b.f #22	ENSGT00940000156546.`b.a.f	ENSGT00940000174980	ENSGT00390000005861.a.d	ENSGT00390000004799.bc.b	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.a	ENSGT01060000248799.b	ENSGT00940000157766.b.b.h	ENSGT00940000159694.b	ENSGT00940000154482.b.b.a.d.vb.a	ENSGT01030000234620.a.a.a.a.a.a.c.b	ENSGT01020000230401.a.a.b.a.a.a	ENSGT00390000007686.b.c.a.f	ENSGT01060000248717.a.a.b	ENSGT01060000248717.a.b.b.b	ENSGT00390000007341.a.i
Salmo	ANCESTRAL SPECIES	12	ENSGT00940000155671.y.b.c.b	ENSGT00390000003466.p	ENSGT00390000014122.b.b	ENSGT00940000158937.b.f	ENSGT00940000160877.i	ENSGT00550000075082.n	ENSGT00390000001445.d	ENSGT00390000005233.b.f	ENSGT00940000159049.a	ENSGT00390000005908.c	ENSGT00940000156513.a.b.d	ENSGT01000000216711	ENSGT00390000015159.a.b.f	ENSGT00940000156491.a.g.b	ENSGT01030000234517.H.b.j.b #10	ENSGT00390000010056.b.f #22	ENSGT00940000156546.`b.a.f	ENSGT00940000174980	ENSGT00390000005861.a.d	ENSGT00390000004799.bc.b	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.a	ENSGT01060000248799.b	ENSGT01060000248717.b.a.a.a	ENSGT00940000157766.b.b.h	ENSGT00940000159694.b	ENSGT00940000154482.b.b.a.d.vb.a	ENSGT01030000234620.a.a.a.a.a.a.c.b	ENSGT01020000230401.a.a.b.a.a.a	ENSGT00390000007686.b.c.a.f	ENSGT01060000248717.a.a.b	ENSGT01060000248717.a.b.a
Atlantic salmon	MODERN SPECIES	25	rnaseh1 (ENSSSAG00000076522)	rps7 (ENSSSAG00000076506)	ENSSSAG00000094089	ENSSSAG00000076499	ENSSSAG00000105758	ENSSSAG00000076487	ENSSSAG00000117770	tdrd6 (ENSSSAG00000076449)	PM14 (ENSSSAG00000090330)	vsnl1a (ENSSSAG00000076443)	ENSSSAG00000112003	ENSSSAG00000096893	ENSSSAG00000076262	fzd3a (ENSSSAG00000076242)	cdc42bpab (ENSSSAG00000048020) #10	lft1 (ENSSSAG00000047406) #22	hnrnpub (ENSSSAG00000044210)	ENSSSAG00000044141	sccpdhb (ENSSSAG00000044042)	sn25a (ENSSSAG00000043755)	ENSSSAG00000115098	ENSSSAG00000043741	ENSSSAG00000043734	slc25a29 (ENSSSAG00000119321)	slc25a47a (ENSSSAG00000043687)	ENSSSAG00000043679	ENSSSAG00000111256	ppp2r5cb (ENSSSAG00000044388)	hsp90aa1.2 (ENSSSAG00000042708)	ENSSSAG00000042593	ENSSSAG00000119421
River trout	MODERN SPECIES		myt1la (ENSSTUG00000000161)	ENSSTUG00000000172	rnaseh1 (ENSSTUG00000000173)	rps7 (ENSSTUG00000000181)	flrt2 (ENSSTUG00000000208)	serpina1l (ENSSTUG00000000214)	glrx5 (ENSSTUG00000000218)	pla2g7 (ENSSTUG00000000250)	tdrd6 (ENSSTUG00000000261)	sf3b6 (ENSSTUG00000000265)	vsnl1a (ENSSTUG00000000268)	ENSSTUG00000000270	fam49a (ENSSTUG00000000283)	fzd3a (ENSSTUG00000000366)	cdc42bpab (ENSSTUG00000000403) #10	lft1 (ENSSTUG00000000478) #22	hnrnpub (ENSSTUG00000000510)	ENSSTUG00000000718	cnstb (ENSSTUG00000000725)	sccpdhb (ENSSTUG00000000730)	snap25a (ENSSTUG00000000740)	ENSSTUG00000000753	ENSSTUG00000000764	slc25a29 (ENSSTUG00000000770)	slc25a47a (ENSSTUG00000000777)	ENSSTUG00000000780	ENSSTUG00000000785	ppp2r5cb (ENSSTUG00000000840)	hsp90aa1.2 (ENSSTUG00000001605)	WDR20 (ENSSTUG00000001925)	ENSSTUG00000001967
Oncorhynchus	ANCESTRAL SPECIES	30	ENSGT00390000003466.p	ENSGT00390000014122.b.b	ENSGT00940000158937.b.f	ENSGT00940000160877.i	ENSGT00550000075082.n	ENSGT00390000001445.d	ENSGT00390000005233.b.f	ENSGT00940000159049.a	ENSGT00390000005908.c	ENSGT00940000156513.a.b.d	ENSGT01000000216711	ENSGT00390000015159.a.b.f	ENSGT01060000253595	ENSGT00940000156491.a.g.b	ENSGT01030000234517.H.b.j.b #10	ENSGT00390000010056.b.f #22	ENSGT00940000156546.`b.a.f	ENSGT00390000005861.a.d	ENSGT00390000004799.bc.b	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.a	ENSGT01060000248799.b	ENSGT00940000157766.b.b.h	ENSGT00940000159694.b	ENSGT00940000154482.b.b.a.d.vb.a	ENSGT01030000234620.a.a.a.a.a.a.c.b	ENSGT01020000230401.a.a.b.a.a.a	ENSGT00390000007686.b.c.a.f	ENSGT00940000159582.h	ENSGT01060000248717.a.b.b.b	ENSGT00390000007341.a.i	ENSGT00940000161931.ib
Oncorhynchus_a	ANCESTRAL SPECIES	35	ENSGT00390000003466.p	ENSGT00390000014122.b.b	ENSGT00940000158937.b.f	ENSGT00940000160877.i	ENSGT00550000075082.n	ENSGT00390000001445.d	ENSGT00390000005233.b.f	ENSGT00940000159049.a	ENSGT00390000005908.c	ENSGT00940000156513.a.b.d	ENSGT01000000216711	ENSGT00390000015159.a.b.f	ENSGT01060000253595	ENSGT00940000156491.a.g.b	ENSGT01030000234517.H.b.j.b #10	ENSGT00390000010056.b.f #22	ENSGT00940000156546.`b.a.f	ENSGT00390000005861.a.d	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.a	ENSGT01060000248799.b	ENSGT00940000157766.b.b.h	ENSGT00940000159694.b	ENSGT00940000154482.b.b.a.d.vb.a	ENSGT01030000234620.a.a.a.a.a.a.c.b	ENSGT01020000230401.a.a.b.a.a.a	ENSGT00390000007686.b.c.a.f	ENSGT01060000248717.a.a.b	ENSGT01060000248717.a.b.b.b	ENSGT00390000007341.a.i	ENSGT00940000161931.ib	ENSGT00940000155369.A.d.b.d
Chinook salmon	MODERN SPECIES	9	ppp2r5cb (ENSOTSG00005009311)	ENSOTSG00005009310	hsp90aa1.2 (ENSOTSG00005009016)	WDR20 (ENSOTSG00005009003)	ENSOTSG00005009002	serpina1l (ENSOTSG00005009000)	glrx5 (ENSOTSG00005008998)	pla2g7 (ENSOTSG00005008472)	tdrd6 (ENSOTSG00005008470)	sf3b6 (ENSOTSG00005008469)	vsnl1a (ENSOTSG00005008468)	fam49a (ENSOTSG00005007944)	ENSOTSG00005007942	fzd3a (ENSOTSG00005007937)	cdc42bpab (ENSOTSG00005006432) #10	lft1 (ENSOTSG00005006419) #22	hnrnpub (ENSOTSG00005004575)	pcdh10a (ENSOTSG00005004548)	ENSOTSG00005004546	sccpdhb (ENSOTSG00005004431)	snap25a (ENSOTSG00005004405)	ENSOTSG00005004402	slc25a29 (ENSOTSG00005004399)	slc25a47a (ENSOTSG00005004396)	ENSOTSG00005004395	ENSOTSG00005004394	ENSOTSG00005004392	ENSOTSG00005004391	ENSOTSG00005004388	mgat2 (ENSOTSG00005004387)	ENSOTSG00005004383
Coho salmon	MODERN SPECIES	13	rps7 (ENSOKIG00005031939)	ENSOKIG00005031924	ENSOKIG00005031909	ENSOKIG00005031894	glrx5 (ENSOKIG00005031881)	ENSOKIG00005031853	ENSOKIG00005031486	tdrd6 (ENSOKIG00005031440)	SF3B6 (ENSOKIG00005031418)	vsnl1a (ENSOKIG00005031403)	ENSOKIG00005031394	CYRIA (ENSOKIG00005030904)	ENSOKIG00005030868	fzd3a (ENSOKIG00005030817)	cdc42bpab (ENSOKIG00005013543) #10	lft1 (ENSOKIG00005012896) #22	hnrnpub (ENSOKIG00005010739)	ENSOKIG00005010647	cnstb (ENSOKIG00005010644)	ENSOKIG00005010622	snap25a (ENSOKIG00005010617)	ENSOKIG00005010605	slc25a29 (ENSOKIG00005010590)	slc25a47a (ENSOKIG00005010582)	ENSOKIG00005010571	ENSOKIG00005010568	ppp2r5cb (ENSOKIG00005010194)	hsp90aa1.2 (ENSOKIG00005009675)	WDR20 (ENSOKIG00005009606)	ENSOKIG00005009557	ENSOKIG00005009531
Rainbow trout	MODERN SPECIES	25	rps7 (ENSOMYG00000010663)	ENSOMYG00000010609	antiprot1 (ENSOMYG00000010547)	glrx5 (ENSOMYG00000010522)	ENSOMYG00000010512	ENSOMYG00000010097	tdrd6 (ENSOMYG00000009808)	pm14 (ENSOMYG00000009718)	vsnl1a (ENSOMYG00000009695)	ENSOMYG00000076929	ENSOMYG00000051778	ENSOMYG00000009099	ENSOMYG00000008868	fzd3a (ENSOMYG00000008843)	cdc42bpab (ENSOMYG00000008663) #10	lft1 (ENSOMYG00000008171) #22	hnrnpub (ENSOMYG00000007536)	ENSOMYG00000054677	ENSOMYG00000065325	cnstb (ENSOMYG00000006803)	sccpdhb (ENSOMYG00000006783)	ENSOMYG00000066679	snap25a (ENSOMYG00000006749)	ENSOMYG00000006718	slc25a29 (ENSOMYG00000006681)	slc25a47a (ENSOMYG00000006624)	ENSOMYG00000006583	ENSOMYG00000006580	ENSOMYG00000058211	ppp2r5cb (ENSOMYG00000004992)	hsp90aa1.2 (ENSOMYG00000002842)
Northern pike	MODERN SPECIES	17	rps7 (ENSELUG00000010176)	allc (ENSELUG00000010210)	flrt2 (ENSELUG00000025094)	serpina1l (ENSELUG00000010257)	glrx5 (ENSELUG00000010281)	ints9 (ENSELUG00000010313)	pla2g7 (ENSELUG00000010326)	tdrd6 (ENSELUG00000010350)	ENSELUG00000025572	sf3b6 (ENSELUG00000028115)	vsnl1a (ENSELUG00000010411)	fam49a (ENSELUG00000010455)	fbxo16 (ENSELUG00000010475)	fzd3a (ENSELUG00000010509)	cdc42bpab (ENSELUG00000010654) #10	lft1 (ENSELUG00000010720) #22	hnrnpub (ENSELUG00000010733)	ENSELUG00000010748	cnstb (ENSELUG00000010791)	sccpdhb (ENSELUG00000000398)	snap25a (ENSELUG00000011186)	ankef1a (ENSELUG00000011203)	ENSELUG00000011290	slc25a29 (ENSELUG00000011360)	slc25a47a (ENSELUG00000011395)	DIO3 (ENSELUG00000011418)	ppp2r5cb (ENSELUG00000011533)	hsp90aa1.2 (ENSELUG00000011559)	WDR20 (ENSELUG00000011607)	ENSELUG00000001585	ENSELUG00000011656
Spotted gar	MODERN SPECIES	647	ENSLOCG00000016067	dguok (ENSLOCG00000016065)	ENSLOCG00000016064	ENSLOCG00000016062	spata17 (ENSLOCG00000016060)	si:ch73-21k16.4 (ENSLOCG00000016058)	ENSLOCG00000016057	esrrga (ENSLOCG00000016054)	USH2A (ENSLOCG00000016044)	KCTD3 (ENSLOCG00000016039)	nrbp1 (ENSLOCG00000016035)	ENSLOCG00000016033	fbxo16 (ENSLOCG00000016029)	fzd3a (ENSLOCG00000016027)	cdc42bpab (ENSLOCG00000016021) #10	lft2 (ENSLOCG00000016018) #22	tmem63a (ENSLOCG00000016012) #25	rsph9 (ENSLOCG00000016010)	mrps18a (ENSLOCG00000016008)	vegfab (ENSLOCG00000016005)	extl3 (ENSLOCG00000016002)	ints9 (ENSLOCG00000015999)	hmbox1a (ENSLOCG00000015994)	KIF13B (ENSLOCG00000015976)	elp3 (ENSLOCG00000015972)	si:ch211-63o20.7 (ENSLOCG00000015970)	pnocb (ENSLOCG00000015967)	znf395b (ENSLOCG00000015964)	paqr8 (ENSLOCG00000017993)	mcm3 (ENSLOCG00000015961)	il17a/f2 (ENSLOCG00000015959)
Reedfish	MODERN SPECIES	11	ENSECRG00000002432	capn9 (ENSECRG00000002406)	agt (ENSECRG00000002382)	cog2 (ENSECRG00000002358)	pgbd5 (ENSECRG00000002343)	ENSECRG00000002325 #18	lin9 (ENSECRG00000002268) #17	acbd3 (ENSECRG00000002232) #19	ENSECRG00000002219 ##20	vegfab (ENSECRG00000002185)	mrps18a (ENSECRG00000002145)	rsph9 (ENSECRG00000002130)	rsph9 (ENSECRG00000002101)	rsph9 (ENSECRG00000002067)	tmem63a (ENSECRG00000002026) #25	lft2 (ENSECRG00000001876) #22	cdc42bpab (ENSECRG00000001749) #10	MTRF1L (ENSECRG00000001698)	fbxo5 (ENSECRG00000001692)	ENSECRG00000001683	vip (ENSECRG00000001669)	ENSECRG00000001201	ENSECRG00000001023	ENSECRG00000001002	ENSECRG00000000977	ENSECRG00000000964	ENSECRG00000000940	ENSECRG00000000927	ENSECRG00000000919	ENSECRG00000000903	ENSECRG00000000889
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1546	brox (ENSCMIG00000018134)	disp1 (ENSCMIG00000018158)	susd4 (ENSCMIG00000018160)	ENSCMIG00000018167	ENSCMIG00000018171	galnt14 (ENSCMIG00000018173)	ENSCMIG00000018176	ENSCMIG00000018177	gpcpd1 (ENSCMIG00000018181)	trmt6 (ENSCMIG00000018187)	MCM8 (ENSCMIG00000018196)	crls1 (ENSCMIG00000018210)	ENSCMIG00000018213	FERMT1 (ENSCMIG00000018237)	SDE2 (ENSCMIG00000018259) #21	ENSCMIG00000018263 #22	ENSCMIG00000018266 ##20	acbd3 (ENSCMIG00000018275) #19	lin9 (ENSCMIG00000018283) #17	SNX9 (ENSCMIG00000018290)	SYNJ2 (ENSCMIG00000018293)	ENSCMIG00000018295	ENSCMIG00000018296	ENSCMIG00000018302	mrpl2 (ENSCMIG00000018312)	ENSCMIG00000018324	gtpbp2b (ENSCMIG00000018346)	polh (ENSCMIG00000018367)	lclat1 (ENSCMIG00000018373)	ypel5 (ENSCMIG00000018374)	ENSCMIG00000018378
Elephant shark	MODERN SPECIES	1628	ankef1a (ENSCMIG00000005916)	ENSCMIG00000005923	snap25b (ENSCMIG00000005925)	mkks (ENSCMIG00000005928)	ENSCMIG00000005933	ENSCMIG00000005935	ENSCMIG00000005942	JAG1 (ENSCMIG00000005970)	ENSCMIG00000006077	cog2 (ENSCMIG00000006083)	ENSCMIG00000006089	bmp2a (ENSCMIG00000006102)	gdf3 (ENSCMIG00000006154)	ENSCMIG00000006158	dad1 (ENSCMIG00000006164)	ENSCMIG00000006174 #22	ENSCMIG00000006205	ENSCMIG00000006226	SCAF8 (ENSCMIG00000006235)	TIAM2 (ENSCMIG00000006249)	tfb1m (ENSCMIG00000006254)	CLDN20 (ENSCMIG00000006264)	NOX3 (ENSCMIG00000006278)	ENSCMIG00000006318	arid1b (ENSCMIG00000006379)	tmem242 (ENSCMIG00000006511)
Cyclostomata	ANCESTRAL SPECIES	538																ENSGT00390000010056 #22	ENSGT00390000006580
Lamprey	MODERN SPECIES	675															ENSPMAG00000001239	lft2 (ENSPMAG00000001240) #22	ENSPMAG00000001244
Hagfish	MODERN SPECIES	45										ENSEBUG00000013114	ENSEBUG00000012724	ENSEBUG00000014929	ENSEBUG00000010247	ENSEBUG00000001504	ENSEBUG00000003560	lft2 (ENSEBUG00000013955) #22	ENSEBUG00000010638	ENSEBUG00000004384 #25	ENSEBUG00000002285