Sarcopterygii	ANCESTRAL SPECIES	268						ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000155581.A	ENSGT00940000158764	ENSGT01040000240511.R	ENSGT01060000248530.C
Tetrapoda	ANCESTRAL SPECIES	56	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT01070000255540	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT01040000241001	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000161648	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00940000163461.b	ENSGT00940000160950	ENSGT00390000018330	ENSGT00940000159233
Amniota	ANCESTRAL SPECIES	19	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT01040000241001	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000161648	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160950	ENSGT00390000018330	ENSGT00940000159233
Mammalia	ANCESTRAL SPECIES	77	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT01030000234633.B.b	ENSGT00940000160046	ENSGT00950000182893.a.a.b	ENSGT00940000158901	ENSGT00940000155006	ENSGT00940000160486	ENSGT00940000156142	ENSGT00940000158405	ENSGT00940000154090.b	ENSGT00720000108866	ENSGT00950000186009	ENSGT00940000162174
Theria	ANCESTRAL SPECIES	19	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764
Eutheria	ANCESTRAL SPECIES	11	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00930000151259
Boreoeutheria	ANCESTRAL SPECIES	17	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Euarchontoglires	ANCESTRAL SPECIES	17	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Primates	ANCESTRAL SPECIES	17	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.b ##24	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Haplorrhini	ANCESTRAL SPECIES	13	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928
Tarsier	MODERN SPECIES	4029																SNTA1 (ENSTSYG00000031328) #22	CDK5RAP1 (ENSTSYG00000013061) #23	BPIFB1 (ENSTSYG00000028664) #24	BPIFA1 (ENSTSYG00000013665) #25	BPIFA3 (ENSTSYG00000034882) #26	BPIFA2 (ENSTSYG00000036461) #27	BPIFB4 (ENSTSYG00000036167) #28	BPIFB3 (ENSTSYG00000007131) #29	BPIFB6 (ENSTSYG00000026610) #30	BPIFB2 (ENSTSYG00000030972) #31	SUN5 (ENSTSYG00000009982) #32
Simiiformes	ANCESTRAL SPECIES	18	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804.cb.b	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928
Catarrhini	ANCESTRAL SPECIES	19	ENSGT00940000153675.a.a.b.e.a.g.b	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804.cb.b	ENSGT00940000157601	ENSGT00390000013771.v	ENSGT00940000154663.u	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00910000147530	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419
Cercopithecidae	ANCESTRAL SPECIES	16	ENSGT00940000153675.a.a.b.e.a.g.b	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804.cb.b.a.b	ENSGT00940000157601	ENSGT00390000013771.v	ENSGT00940000154663.u	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00910000147530	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419
Cercopithecinae	ANCESTRAL SPECIES	19	ENSGT00940000153675.a.a.b.e.a.g.b	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804.cb.b.a.b	ENSGT00940000157601	ENSGT00390000013771.v	ENSGT00940000154663.u	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00910000147530	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419
Vervet Monkey	MODERN SPECIES	11	MAP1LC3A (ENSCSAG00000012080)	DYNLRB1 (ENSCSAG00000012088)	ITCH (ENSCSAG00000012102)	AHCY (ENSCSAG00000012115)	ASIP (ENSCSAG00000012125)	EIF2S2 (ENSCSAG00000012138)	RALY (ENSCSAG00000012199)	CHMP4B (ENSCSAG00000012213)	ZNF341 (ENSCSAG00000012235)	PXMP4 (ENSCSAG00000012247)	E2F1 (ENSCSAG00000012265)	ACTL10 (ENSCSAG00000018668)	C20orf144 (ENSCSAG00000012277)	NECAB3 (ENSCSAG00000012279)	CBFA2T2 (ENSCSAG00000012281)	SNTA1 (ENSCSAG00000012284) #22	CDK5RAP1 (ENSCSAG00000012289) #23	BPIFB1 (ENSCSAG00000012293) #24	BPIFA1 (ENSCSAG00000012315) #25	BPIFA3 (ENSCSAG00000012337) #26	BPIFA2 (ENSCSAG00000012361) #27	BPIFB4 (ENSCSAG00000012383) #28	BPIFB3 (ENSCSAG00000012411) #29	BPIFB6 (ENSCSAG00000012441) #30	BPIFB2 (ENSCSAG00000012461) #31	SUN5 (ENSCSAG00000012504) #32	ENSCSAG00000012522	MAPRE1 (ENSCSAG00000012529)	DNMT3B (ENSCSAG00000012573)	COMMD7 (ENSCSAG00000012589)	ENSCSAG00000012596
Cercopithecinae_a	ANCESTRAL SPECIES	18	ENSGT00940000153095.g.b.a.b.o	ENSGT00390000001804.cb.b.a.b	ENSGT00910000147823	ENSGT00390000001804.cb.b.a.a	ENSGT00940000157601	ENSGT00390000013771.v	ENSGT00940000154663.u	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00910000147530	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00390000018318.u.b.a.a.n.b	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928
Macaca	ANCESTRAL SPECIES	16	ENSGT00940000153095.g.b.a.b.o	ENSGT00390000001804.cb.b.a.b	ENSGT00910000147823	ENSGT00390000001804.cb.b.a.a	ENSGT00940000157601	ENSGT00390000013771.v	ENSGT00940000154663.u	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00910000147530	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.a.b ##24	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00390000018318.u.b.a.a.n.b	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928
Macaca_a	ANCESTRAL SPECIES	18	ENSGT00940000154258.a	ENSGT00940000153095.g.b.a.b.o	ENSGT00390000001804.cb.b.a.a	ENSGT00940000157601	ENSGT00940000154663.u	ENSGT00390000000546	ENSGT00390000001562	ENSGT01100000263539.b.b.b.a.a.a.b	ENSGT00940000159472	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00910000147530	ENSGT00950000183176.a	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.b.a.a.b.b.a.a.a.b.a.a.b.a	ENSGT00940000161627.a.a.a.a.b.a.a.a.a.b.b.b.b.b	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.a.b ##24	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00390000018318.u.b.a.a.n.b	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928
Crab-eating macaque	MODERN SPECIES	1	RALY (ENSMFAG00000033131)	ENSMFAG00000050321	ENSMFAG00000051093	CHMP4B (ENSMFAG00000040050)	ENSMFAG00000045920	ENSMFAG00000039376	ENSMFAG00000047376	E2F1 (ENSMFAG00000042416)	C20orf144 (ENSMFAG00000038184)	NECAB3 (ENSMFAG00000035873)	ENSMFAG00000050553	CBFA2T2 (ENSMFAG00000000820)	ENSMFAG00000051247	ENSMFAG00000047567	ENSMFAG00000053042	SNTA1 (ENSMFAG00000039231) #22	CDK5RAP1 (ENSMFAG00000040526) #23	BPIFB1 (ENSMFAG00000036542) #24	BPIFA1 (ENSMFAG00000041209) #25	BPIFA3 (ENSMFAG00000002677) #26	BPIFA2 (ENSMFAG00000032051) #27	BPIFB4 (ENSMFAG00000030797) #28	BPIFB3 (ENSMFAG00000042929) #29	BPIFB6 (ENSMFAG00000036761) #30	BPIFB2 (ENSMFAG00000040564) #31	SUN5 (ENSMFAG00000035909) #32	EFCAB8 (ENSMFAG00000006242)	MAPRE1 (ENSMFAG00000007474)	DNMT3B (ENSMFAG00000040834)	COMMD7 (ENSMFAG00000041599)	C20orf203 (ENSMFAG00000063893)
Pig-tailed macaque	MODERN SPECIES	232	ASIP (ENSMNEG00000040686)	ENSMNEG00000029730	ENSMNEG00000044539	EIF2S2 (ENSMNEG00000029852)	ENSMNEG00000018000	RALY (ENSMNEG00000044988)	ENSMNEG00000039504	CHMP4B (ENSMNEG00000032657)	ZNF341 (ENSMNEG00000034107)	PXMP4 (ENSMNEG00000010793)	E2F1 (ENSMNEG00000027050)	ACTL10 (ENSMNEG00000026090)	C20orf144 (ENSMNEG00000045111)	NECAB3 (ENSMNEG00000040091)	CBFA2T2 (ENSMNEG00000034428)	SNTA1 (ENSMNEG00000038405) #22	CDK5RAP1 (ENSMNEG00000045565) #23	BPIFB1 (ENSMNEG00000043489) #24	BPIFA1 (ENSMNEG00000044088) #25	BPIFA3 (ENSMNEG00000005575) #26	ENSMNEG00000028931 ##24	BPIFA2 (ENSMNEG00000042823) #27	BPIFB4 (ENSMNEG00000043965) #28	BPIFB3 (ENSMNEG00000038601) #29	BPIFB6 (ENSMNEG00000035018) #30	BPIFB2 (ENSMNEG00000029774) #31	SUN5 (ENSMNEG00000033611) #32	ENSMNEG00000036815	EFCAB8 (ENSMNEG00000035540)	MAPRE1 (ENSMNEG00000039307)	DNMT3B (ENSMNEG00000038981)
Cercopithecinae_b	ANCESTRAL SPECIES	12	ENSGT00390000007890.c.a	ENSGT00940000153095.g.b.a.b.o	ENSGT00390000001804.cb.b.a.b	ENSGT00910000147823	ENSGT00940000157601	ENSGT00390000013771.v	ENSGT00940000154663.u	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00910000147530	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00390000018318.u.b.a.a.n.b	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928
Cercopithecinae_d	ANCESTRAL SPECIES	2	ENSGT00390000007890.c.a	ENSGT00940000153095.g.b.a.b.o	ENSGT00390000001804.cb.b.a.b	ENSGT00910000147823	ENSGT00940000157601	ENSGT00390000013771.v	ENSGT00940000154663.u	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00910000147530	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00390000018318.u.b.a.a.n.b	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928
Drill	MODERN SPECIES	1448		ENSMLEG00000033651	EIF2S2 (ENSMLEG00000039854)	ENSMLEG00000004937	RALY (ENSMLEG00000028900)	ENSMLEG00000000187	CHMP4B (ENSMLEG00000033156)	ZNF341 (ENSMLEG00000031946)	PXMP4 (ENSMLEG00000032170)	E2F1 (ENSMLEG00000004422)	ACTL10 (ENSMLEG00000008960)	C20orf144 (ENSMLEG00000044204)	NECAB3 (ENSMLEG00000041816)	ENSMLEG00000010723	CBFA2T2 (ENSMLEG00000042497)	SNTA1 (ENSMLEG00000040271) #22	CDK5RAP1 (ENSMLEG00000029036) #23
Sooty mangabey	MODERN SPECIES	602	ENSCATG00000039901	ENSCATG00000044570	ENSCATG00000044082	ENSCATG00000022568	RALY (ENSCATG00000031769)	ENSCATG00000032333	CHMP4B (ENSCATG00000044221)	ZNF341 (ENSCATG00000011236)	PXMP4 (ENSCATG00000044653)	E2F1 (ENSCATG00000039419)	ACTL10 (ENSCATG00000022465)	C20orf144 (ENSCATG00000044672)	NECAB3 (ENSCATG00000034703)	ENSCATG00000022295	CBFA2T2 (ENSCATG00000006176)	SNTA1 (ENSCATG00000044322) #22	CDK5RAP1 (ENSCATG00000039579) #23	BPIFB1 (ENSCATG00000026260) #24	BPIFA1 (ENSCATG00000042760) #25	BPIFA3 (ENSCATG00000041213) #26	ENSCATG00000029740	BPIFA2 (ENSCATG00000042233) #27	BPIFB4 (ENSCATG00000008536) #28	BPIFB3 (ENSCATG00000043728) #29	BPIFB6 (ENSCATG00000032216) #30	BPIFB2 (ENSCATG00000035818) #31	SUN5 (ENSCATG00000030423) #32	ENSCATG00000038780	EFCAB8 (ENSCATG00000043154)	MAPRE1 (ENSCATG00000041722)	DNMT3B (ENSCATG00000029815)
Rhinopithecus	ANCESTRAL SPECIES	28	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804.cb.b.b	ENSGT00390000001804.cb.b.a.b.d	ENSGT00940000157601	ENSGT00390000013771.v	ENSGT00940000154663.u	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928.a	ENSGT00390000012419
Black snub-nosed monkey	MODERN SPECIES	751																SNTA1 (ENSRBIG00000036776) #22	CDK5RAP1 (ENSRBIG00000041507) #23	BPIFB1 (ENSRBIG00000023420) #24	BPIFA1 (ENSRBIG00000028541) #25	BPIFA3 (ENSRBIG00000035313) #26	ENSRBIG00000028643	BPIFA2 (ENSRBIG00000015461) #27	BPIFB4 (ENSRBIG00000032341) #28	BPIFB3 (ENSRBIG00000036953) #29	BPIFB6 (ENSRBIG00000024079) #30	BPIFB2 (ENSRBIG00000034361) #31	SUN5 (ENSRBIG00000030532) #32	EFCAB8 (ENSRBIG00000043449)	MAPRE1 (ENSRBIG00000042693)	ENSRBIG00000040209	COMMD7 (ENSRBIG00000029627)
Golden snub-nosed monkey	MODERN SPECIES	896							ENSRROG00000039774	CHMP4B (ENSRROG00000029883)	ZNF341 (ENSRROG00000032773)	PXMP4 (ENSRROG00000033853)	E2F1 (ENSRROG00000039358)	NECAB3 (ENSRROG00000010016)	ACTL10 (ENSRROG00000009546)	C20orf144 (ENSRROG00000044990)	CBFA2T2 (ENSRROG00000035361)	SNTA1 (ENSRROG00000042592) #22	CDK5RAP1 (ENSRROG00000037532) #23	BPIFB1 (ENSRROG00000034793) #24	BPIFA1 (ENSRROG00000029579) #25	BPIFA3 (ENSRROG00000041448) #26	ENSRROG00000045498	BPIFA2 (ENSRROG00000038035) #27	BPIFB4 (ENSRROG00000043803) #28	BPIFB3 (ENSRROG00000040199) #29	BPIFB6 (ENSRROG00000030178) #30	BPIFB2 (ENSRROG00000041108) #31	SUN5 (ENSRROG00000043627) #32
Hominoidea	ANCESTRAL SPECIES	17	ENSGT00940000153675.a.a.b.e.a.g.b	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804.cb.b.c.a	ENSGT00940000157601	ENSGT00390000013771.v	ENSGT00940000154663.u	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00910000147530	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419
Hominidae	ANCESTRAL SPECIES	18	ENSGT00940000153675.a.a.b.e.a.g.b	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804.cb.b.c.a	ENSGT00940000157601	ENSGT00390000013771.v	ENSGT00940000154663.u	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00910000147530	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT00940000157014	ENSGT00940000163568	ENSGT00940000154258.a	ENSGT00390000001804.cb.b.c.a	ENSGT00940000157601	ENSGT00940000154663.u	ENSGT00950000183030.m.a.a.b.a.b.a.b	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00910000147530	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT00940000157014	ENSGT00940000163568	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804.cb.b.c.a	ENSGT00940000157601	ENSGT00940000154663.u	ENSGT00950000183030.m.a.a.b.a.b.a.b	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419
Pan	ANCESTRAL SPECIES	15	ENSGT00940000157014	ENSGT00940000163568	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804.cb.b.d	ENSGT00940000157601	ENSGT00940000154663.u	ENSGT00950000183030.m.a.a.b.a.b.a.b	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419
Chimpanzee	MODERN SPECIES	11	AHCY (ENSPTRG00000013414)	ASIP (ENSPTRG00000013413)	ENSPTRG00000046065	ENSPTRG00000045368	EIF2S2 (ENSPTRG00000013412)	RALY (ENSPTRG00000013410)	CHMP4B (ENSPTRG00000013408)	ENSPTRG00000045113	ZNF341 (ENSPTRG00000013406)	PXMP4 (ENSPTRG00000013405)	E2F1 (ENSPTRG00000013404)	ENSPTRG00000047541	C20H20orf144 (ENSPTRG00000013403)	NECAB3 (ENSPTRG00000013402)	CBFA2T2 (ENSPTRG00000013401)	SNTA1 (ENSPTRG00000013400) #22	CDK5RAP1 (ENSPTRG00000013399) #23	BPIFB1 (ENSPTRG00000013396) #24	BPIFA1 (ENSPTRG00000013395) #25	BPIFA3 (ENSPTRG00000013393) #26	ENSPTRG00000049909	BPIFA2 (ENSPTRG00000013391) #27	BPIFB4 (ENSPTRG00000013390) #28	BPIFB3 (ENSPTRG00000022778) #29	BPIFB6 (ENSPTRG00000013388) #30	BPIFB2 (ENSPTRG00000013387) #31	SUN5 (ENSPTRG00000024395) #32	EFCAB8 (ENSPTRG00000034012)	MAPRE1 (ENSPTRG00000013385)	DNMT3B (ENSPTRG00000013384)	COMMD7 (ENSPTRG00000013383)
Bonobo	MODERN SPECIES	11	ASIP (ENSPPAG00000031015)	ENSPPAG00000043799	ENSPPAG00000041601	ENSPPAG00000041611	ENSPPAG00000043449	RALY (ENSPPAG00000034951)	CHMP4B (ENSPPAG00000028496)	ENSPPAG00000037596	ZNF341 (ENSPPAG00000037384)	PXMP4 (ENSPPAG00000028570)	E2F1 (ENSPPAG00000025868)	ACTL10 (ENSPPAG00000026624)	C20orf144 (ENSPPAG00000042847)	NECAB3 (ENSPPAG00000039394)	CBFA2T2 (ENSPPAG00000042396)	SNTA1 (ENSPPAG00000029137) #22	CDK5RAP1 (ENSPPAG00000008989) #23	BPIFB1 (ENSPPAG00000029535) #24	BPIFA1 (ENSPPAG00000034693) #25	BPIFA3 (ENSPPAG00000011914) #26	ENSPPAG00000041776	BPIFA2 (ENSPPAG00000038731) #27	BPIFB4 (ENSPPAG00000042697) #28	BPIFB3 (ENSPPAG00000036747) #29	BPIFB6 (ENSPPAG00000019659) #30	BPIFB2 (ENSPPAG00000041501) #31	SUN5 (ENSPPAG00000029851) #32	EFCAB8 (ENSPPAG00000043457)	MAPRE1 (ENSPPAG00000025593)	DNMT3B (ENSPPAG00000034470)	COMMD7 (ENSPPAG00000038127)
Human	MODERN SPECIES	12	MAP1LC3A (ENSG00000101460)	DYNLRB1 (ENSG00000125971)	ITCH (ENSG00000078747)	AHCY (ENSG00000101444)	ASIP (ENSG00000101440)	EIF2S2 (ENSG00000125977)	RALY (ENSG00000125970)	CHMP4B (ENSG00000101421)	ZNF341 (ENSG00000131061)	PXMP4 (ENSG00000101417)	E2F1 (ENSG00000101412)	ACTL10 (ENSG00000288649)	C20orf144 (ENSG00000149609)	NECAB3 (ENSG00000125967)	CBFA2T2 (ENSG00000078699)	SNTA1 (ENSG00000101400) #22	CDK5RAP1 (ENSG00000101391) #23	BPIFB1 (ENSG00000125999) #24	BPIFA1 (ENSG00000198183) #25	BPIFA3 (ENSG00000131059) #26	BPIFA2 (ENSG00000131050) #27	BPIFB4 (ENSG00000186191) #28	BPIFB3 (ENSG00000186190) #29	BPIFB6 (ENSG00000167104) #30	BPIFB2 (ENSG00000078898) #31	SUN5 (ENSG00000167098) #32	EFCAB8 (ENSG00000215529)	MAPRE1 (ENSG00000101367)	DNMT3B (ENSG00000088305)	COMMD7 (ENSG00000149600)	ENSG00000285382
Gorilla	MODERN SPECIES	11	ENSGGOG00000040622	ASIP (ENSGGOG00000026572)	ENSGGOG00000027170	ENSGGOG00000015546	RALY (ENSGGOG00000022709)	CHMP4B (ENSGGOG00000007775)	ENSGGOG00000025590	ZNF341 (ENSGGOG00000015775)	PXMP4 (ENSGGOG00000044115)	E2F1 (ENSGGOG00000003588)	ACTL10 (ENSGGOG00000042107)	C20orf144 (ENSGGOG00000038124)	NECAB3 (ENSGGOG00000003584)	ENSGGOG00000043692	ENSGGOG00000003578	SNTA1 (ENSGGOG00000008508) #22	ENSGGOG00000003253 #23	BPIFB1 (ENSGGOG00000003242) #24	BPIFA1 (ENSGGOG00000027809) #25	BPIFA3 (ENSGGOG00000023198) #26	ENSGGOG00000017163	BPIFA2 (ENSGGOG00000017162) #27	BPIFB4 (ENSGGOG00000011742) #28	BPIFB3 (ENSGGOG00000010657) #29	BPIFB6 (ENSGGOG00000010638) #30	BPIFB2 (ENSGGOG00000010625) #31	SUN5 (ENSGGOG00000008288) #32	EFCAB8 (ENSGGOG00000000152)	ENSGGOG00000022496	DNMT3B (ENSGGOG00000009533)	ENSGGOG00000026150
Orangutan	MODERN SPECIES	11	ENSPPYG00000010937	ITCH (ENSPPYG00000010936)	AHCY (ENSPPYG00000010935)	ENSPPYG00000010934	EIF2S2 (ENSPPYG00000010933)	ENSPPYG00000010932	ENSPPYG00000041388	CHMP4B (ENSPPYG00000010931)	ZNF341 (ENSPPYG00000010930)	PXMP4 (ENSPPYG00000041080)	E2F1 (ENSPPYG00000010929)	ACTL10 (ENSPPYG00000010928)	C20orf144 (ENSPPYG00000010927)	NECAB3 (ENSPPYG00000010926)	CBFA2T2 (ENSPPYG00000010925)	SNTA1 (ENSPPYG00000010924) #22	CDK5RAP1 (ENSPPYG00000010923) #23	BPIFB1 (ENSPPYG00000010919) #24	BPIFA1 (ENSPPYG00000010918) #25	BPIFA3 (ENSPPYG00000010917) #26	BPIFA2 (ENSPPYG00000010915) #27	ENSPPYG00000011281 #28	BPIFB3 (ENSPPYG00000011280) #29	BPIFB6 (ENSPPYG00000011279) #30	BPIFB2 (ENSPPYG00000011278) #31	SUN5 (ENSPPYG00000010914) #32	EFCAB8 (ENSPPYG00000032398)	ENSPPYG00000035142	MAPRE1 (ENSPPYG00000032390)	DNMT3B (ENSPPYG00000010911)	COMMD7 (ENSPPYG00000010910)
Gibbon	MODERN SPECIES	3	ENSNLEG00000010082	ITCH (ENSNLEG00000010045)	ENSNLEG00000030506	ENSNLEG00000010041	ENSNLEG00000028939	EIF2S2 (ENSNLEG00000010034)	ENSNLEG00000010031	ENSNLEG00000035552	CHMP4B (ENSNLEG00000010020)	ZNF341 (ENSNLEG00000010013)	ENSNLEG00000029978	E2F1 (ENSNLEG00000010009)	ENSNLEG00000009989	C20orf144 (ENSNLEG00000010006)	CBFA2T2 (ENSNLEG00000009976)	SNTA1 (ENSNLEG00000009970) #22	CDK5RAP1 (ENSNLEG00000009942) #23	BPIFB1 (ENSNLEG00000009918) #24	ENSNLEG00000009915 #25	BPIFA3 (ENSNLEG00000009907) #26	ENSNLEG00000032607	BPIFA2 (ENSNLEG00000009895) #27	BPIFB4 (ENSNLEG00000009889) #28	BPIFB3 (ENSNLEG00000009874) #29	BPIFB6 (ENSNLEG00000009863) #30	BPIFB2 (ENSNLEG00000009854) #31	SUN5 (ENSNLEG00000009839) #32	MAPRE1 (ENSNLEG00000009828)	DNMT3B (ENSNLEG00000009819)	ENSNLEG00000033204	ENSNLEG00000009815
Platyrrhini	ANCESTRAL SPECIES	11	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a.dc.b	ENSGT00940000154258.a	ENSGT00390000001804.cb.a	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928
Mas night monkey	MODERN SPECIES	1017	ENSANAG00000023825	ITCH (ENSANAG00000027856)	ENSANAG00000014301	ENSANAG00000033573	ASIP (ENSANAG00000030668)	ENSANAG00000022839	RALY (ENSANAG00000019376)	CHMP4B (ENSANAG00000023014)	ZNF341 (ENSANAG00000023240)	PXMP4 (ENSANAG00000031512)	E2F1 (ENSANAG00000029428)	C20orf144 (ENSANAG00000028577)	NECAB3 (ENSANAG00000024109)	CBFA2T2 (ENSANAG00000029831)	ENSANAG00000022327	SNTA1 (ENSANAG00000021276) #22	CDK5RAP1 (ENSANAG00000036607) #23	BPIFB1 (ENSANAG00000024111) #24	BPIFA1 (ENSANAG00000023955) #25	BPIFA3 (ENSANAG00000029660) #26	ENSANAG00000026946	BPIFA2 (ENSANAG00000020124) #27	BPIFB4 (ENSANAG00000021575) #28	BPIFB3 (ENSANAG00000005106) #29	BPIFB6 (ENSANAG00000034061) #30	BPIFB2 (ENSANAG00000023925) #31	SUN5 (ENSANAG00000026404) #32	EFCAB8 (ENSANAG00000029449)	MAPRE1 (ENSANAG00000035566)	ENSANAG00000025386	COMMD7 (ENSANAG00000007345)
Cebidae	ANCESTRAL SPECIES	13	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a.dc.b	ENSGT00940000154258.a	ENSGT00390000001804.cb.a.c	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928
Marmoset	MODERN SPECIES	17	ITCH (ENSCJAG00000018204)	ENSCJAG00000047561	ENSCJAG00000084324	AHCY (ENSCJAG00000018303)	ASIP (ENSCJAG00000018327)	ENSCJAG00000018334	ENSCJAG00000018361	CHMP4B (ENSCJAG00000018397)	ZNF341 (ENSCJAG00000018423)	PXMP4 (ENSCJAG00000080526)	E2F1 (ENSCJAG00000018451)	NECAB3 (ENSCJAG00000018455)	ACTL10 (ENSCJAG00000058257)	CBFA2T2 (ENSCJAG00000018475)	ENSCJAG00000071493	SNTA1 (ENSCJAG00000046751) #22	CDK5RAP1 (ENSCJAG00000018500) #23	ENSCJAG00000074490	BPIFB1 (ENSCJAG00000018531) #24	BPIFA1 (ENSCJAG00000018547) #25	BPIFA3 (ENSCJAG00000018565) #26	BPIFA2 (ENSCJAG00000018544) #27	BPIFB4 (ENSCJAG00000034914) #28	BPIFB3 (ENSCJAG00000018580) #29	BPIFB6 (ENSCJAG00000018589) #30	BPIFB2 (ENSCJAG00000018598) #31	SUN5 (ENSCJAG00000018611) #32	EFCAB8 (ENSCJAG00000083357)	ENSCJAG00000015601	DNMT3B (ENSCJAG00000015617)	ENSCJAG00000072168
Cebidae_a	ANCESTRAL SPECIES	2	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a.dc.b	ENSGT00940000154258.a	ENSGT00390000001804.cb.a.c	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419
Capuchin	MODERN SPECIES	18	ITCH (ENSCCAG00000036090)	ENSCCAG00000036415	ASIP (ENSCCAG00000034213)	ENSCCAG00000035446	RALY (ENSCCAG00000024548)	CHMP4B (ENSCCAG00000035412)	ZNF341 (ENSCCAG00000022663)	PXMP4 (ENSCCAG00000023929)	E2F1 (ENSCCAG00000031862)	NECAB3 (ENSCCAG00000025337)	ACTL10 (ENSCCAG00000020021)	C20orf144 (ENSCCAG00000001393)	CBFA2T2 (ENSCCAG00000030202)	ENSCCAG00000020608	ENSCCAG00000023290	SNTA1 (ENSCCAG00000037245) #22	CDK5RAP1 (ENSCCAG00000031228) #23	BPIFB1 (ENSCCAG00000015758) #24	BPIFA1 (ENSCCAG00000021907) #25	BPIFA3 (ENSCCAG00000022344) #26	ENSCCAG00000034919 ##24	BPIFA2 (ENSCCAG00000021755) #27	BPIFB4 (ENSCCAG00000027553) #28	BPIFB3 (ENSCCAG00000022192) #29	BPIFB6 (ENSCCAG00000030049) #30	BPIFB2 (ENSCCAG00000030652) #31	SUN5 (ENSCCAG00000034764) #32	EFCAB8 (ENSCCAG00000022910)	MAPRE1 (ENSCCAG00000030764)	ENSCCAG00000020225	COMMD7 (ENSCCAG00000031234)
Bolivian squirrel monkey	MODERN SPECIES	89	MAP1LC3A (ENSSBOG00000027529)	ENSSBOG00000034562	ITCH (ENSSBOG00000028570)	AHCY (ENSSBOG00000018930)	ENSSBOG00000035159	ENSSBOG00000020845	RALY (ENSSBOG00000001418)	CHMP4B (ENSSBOG00000030524)	ZNF341 (ENSSBOG00000026329)	PXMP4 (ENSSBOG00000005223)	E2F1 (ENSSBOG00000028962)	NECAB3 (ENSSBOG00000036045)	ACTL10 (ENSSBOG00000004671)	C20orf144 (ENSSBOG00000026299)	CBFA2T2 (ENSSBOG00000029834)	SNTA1 (ENSSBOG00000020201) #22	CDK5RAP1 (ENSSBOG00000034885) #23	BPIFB1 (ENSSBOG00000023508) #24	BPIFA1 (ENSSBOG00000033533) #25	BPIFA3 (ENSSBOG00000031059) #26	ENSSBOG00000035555	BPIFA2 (ENSSBOG00000031635) #27	BPIFB4 (ENSSBOG00000034867) #28	BPIFB3 (ENSSBOG00000035285) #29	BPIFB6 (ENSSBOG00000015194) #30	BPIFB2 (ENSSBOG00000023467) #31	SUN5 (ENSSBOG00000036230) #32	EFCAB8 (ENSSBOG00000035195)	MAPRE1 (ENSSBOG00000026959)	DNMT3B (ENSSBOG00000030711)	NOL4L (ENSSBOG00000020030)
Strepsirrhini	ANCESTRAL SPECIES	12	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419
Lemuriformes	ANCESTRAL SPECIES	10	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419	ENSGT00940000157729	ENSGT00520000055578.a.a.c
Lemuriformes_a	ANCESTRAL SPECIES	26	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419	ENSGT00940000157729	ENSGT00520000055578.a.a.c
Coquerels sifaka	MODERN SPECIES	126	ITCH (ENSPCOG00000009922)	ENSPCOG00000023647	AHCY (ENSPCOG00000028404)	ASIP (ENSPCOG00000010026)	ENSPCOG00000016748	ENSPCOG00000016432	EIF2S2 (ENSPCOG00000023384)	RALY (ENSPCOG00000016363)	CHMP4B (ENSPCOG00000019410)	ZNF341 (ENSPCOG00000023267)	PXMP4 (ENSPCOG00000024717)	E2F1 (ENSPCOG00000020987)	NECAB3 (ENSPCOG00000028089)	ENSPCOG00000016999	CBFA2T2 (ENSPCOG00000018468)	SNTA1 (ENSPCOG00000027507) #22	CDK5RAP1 (ENSPCOG00000024202) #23	BPIFB1 (ENSPCOG00000028115) #24	BPIFA1 (ENSPCOG00000015572) #25	BPIFA2 (ENSPCOG00000020981) #27	BPIFB4 (ENSPCOG00000014355) #28	BPIFB3 (ENSPCOG00000002263) #29	BPIFB6 (ENSPCOG00000019939) #30	BPIFB2 (ENSPCOG00000024187) #31	SUN5 (ENSPCOG00000021842) #32	EFCAB8 (ENSPCOG00000003137)	MAPRE1 (ENSPCOG00000011361)	ENSPCOG00000011905	DNMT3B (ENSPCOG00000025216)	ENSPCOG00000021565	NOL4L (ENSPCOG00000013169)
Greater bamboo lemur	MODERN SPECIES	98	MAP1LC3A (ENSPSMG00000018505)	ENSPSMG00000018498	ITCH (ENSPSMG00000018448)	AHCY (ENSPSMG00000018371)	ASIP (ENSPSMG00000018334)	EIF2S2 (ENSPSMG00000018322)	RALY (ENSPSMG00000018249)	CHMP4B (ENSPSMG00000018182)	ZNF341 (ENSPSMG00000018155)	PXMP4 (ENSPSMG00000018104)	E2F1 (ENSPSMG00000018083)	ACTL10 (ENSPSMG00000018073)	ENSPSMG00000018069	NECAB3 (ENSPSMG00000018052)	CBFA2T2 (ENSPSMG00000017990)	SNTA1 (ENSPSMG00000017942) #22	ENSPSMG00000017928 #23
Mouse lemur	MODERN SPECIES	9	MAP1LC3A (ENSMICG00000028466)	DYNLRB1 (ENSMICG00000003253)	ITCH (ENSMICG00000003238)	ENSMICG00000034345	ENSMICG00000032740	AHCY (ENSMICG00000003232)	ASIP (ENSMICG00000044506)	ENSMICG00000006944	RALY (ENSMICG00000039074)	ENSMICG00000042802	ZNF341 (ENSMICG00000047832)	ENSMICG00000028174	E2F1 (ENSMICG00000006921)	NECAB3 (ENSMICG00000006906)	ENSMICG00000006895	SNTA1 (ENSMICG00000004936) #22	CDK5RAP1 (ENSMICG00000004382) #23	BPIFB1 (ENSMICG00000004357) #24	BPIFA1 (ENSMICG00000004348) #25	BPIFA2 (ENSMICG00000013403) #27	BPIFB4 (ENSMICG00000026403) #28	BPIFB3 (ENSMICG00000001990) #29	BPIFB6 (ENSMICG00000001984) #30	BPIFB2 (ENSMICG00000001979) #31	SUN5 (ENSMICG00000001971) #32	EFCAB8 (ENSMICG00000036641)	MAPRE1 (ENSMICG00000047719)	DNMT3B (ENSMICG00000006679)	COMMD7 (ENSMICG00000006672)	NOL4L (ENSMICG00000006651)	ASXL1 (ENSMICG00000038277)
Bushbaby	MODERN SPECIES	140	MAP1LC3A (ENSOGAG00000027682)	ENSOGAG00000016802	ITCH (ENSOGAG00000016792)	AHCY (ENSOGAG00000016787)	ENSOGAG00000001417	RALY (ENSOGAG00000032337)	ENSOGAG00000013532	CHMP4B (ENSOGAG00000010444)	ZNF341 (ENSOGAG00000010441)	PXMP4 (ENSOGAG00000010440)	E2F1 (ENSOGAG00000024304)	ACTL10 (ENSOGAG00000010438)	NECAB3 (ENSOGAG00000028758)	CBFA2T2 (ENSOGAG00000015051)	ENSOGAG00000032821	SNTA1 (ENSOGAG00000027133) #22	CDK5RAP1 (ENSOGAG00000010764) #23	ENSOGAG00000010760	ENSOGAG00000024646 ##24	BPIFB1 (ENSOGAG00000010753) #24	BPIFA1 (ENSOGAG00000010750) #25	BPIFA2 (ENSOGAG00000010742) #27	ENSOGAG00000027213	BPIFB4 (ENSOGAG00000010737) #28	BPIFB3 (ENSOGAG00000015673) #29	BPIFB6 (ENSOGAG00000015669) #30	BPIFB2 (ENSOGAG00000015664) #31	SUN5 (ENSOGAG00000015660) #32	ENSOGAG00000026557	DNMT3B (ENSOGAG00000004720)	COMMD7 (ENSOGAG00000004718)
Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a
Tree shrew	MODERN SPECIES	1365																SNTA1 (ENSTBEG00000006415) #22	CDK5RAP1 (ENSTBEG00000006040) #23	ENSTBEG00000005761	ENSTBEG00000005479	BPIFB1 (ENSTBEG00000003648) #24	BPIFA1 (ENSTBEG00000003115) #25	ENSTBEG00000001858	ENSTBEG00000001404	ENSTBEG00000000864
Glires	ANCESTRAL SPECIES	17	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a
Lagomorpha	ANCESTRAL SPECIES	33	ENSGT00730000111114	ENSGT00390000014941	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000167211	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00930000151259	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419
Rabbit	MODERN SPECIES	15	ENSOCUG00000009634	PIGU (ENSOCUG00000009627)	ENSOCUG00000021027	ITCH (ENSOCUG00000015354)	ENSOCUG00000008592	ENSOCUG00000036618	asip (ENSOCUG00000011138)	ENSOCUG00000038624	EIF2S2 (ENSOCUG00000000481)	RALY (ENSOCUG00000000477)	ZNF341 (ENSOCUG00000024028)	PXMP4 (ENSOCUG00000005415)	NECAB3 (ENSOCUG00000000850)	ENSOCUG00000000854	CBFA2T2 (ENSOCUG00000000849)	SNTA1 (ENSOCUG00000011916) #22	CDK5RAP1 (ENSOCUG00000017069) #23	ENSOCUG00000017051 #24	BPIFA1 (ENSOCUG00000007538) #25	ENSOCUG00000015717 #26	BPIFB3 (ENSOCUG00000014883) #29	BPIFB6 (ENSOCUG00000006815) #30	BPIFB2 (ENSOCUG00000027554) #31	SUN5 (ENSOCUG00000022223) #32	ENSOCUG00000035490	MAPRE1 (ENSOCUG00000024265)	DNMT3B (ENSOCUG00000017835)	ENSOCUG00000014339	NOL4L (ENSOCUG00000010835)	ASXL1 (ENSOCUG00000035849)	KIF3B (ENSOCUG00000021741)
Pika	MODERN SPECIES	4588																SNTA1 (ENSOPRG00000006874) #22	CDK5RAP1 (ENSOPRG00000006858) #23	ENSOPRG00000006855	ENSOPRG00000006842	BPIFB1 (ENSOPRG00000006828) #24	BPIFA1 (ENSOPRG00000006812) #25	BPIFA3 (ENSOPRG00000006798) #26	ENSOPRG00000006785	ENSOPRG00000006766	BPIFB4 (ENSOPRG00000006756) #28	BPIFB3 (ENSOPRG00000006748) #29	BPIFB2 (ENSOPRG00000006729) #31	SUN5 (ENSOPRG00000006713) #32	ENSOPRG00000018610	MAPRE1 (ENSOPRG00000006707)	DNMT3B (ENSOPRG00000006680)
Rodentia	ANCESTRAL SPECIES	18	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a.l	ENSGT00940000156928	ENSGT00390000012419
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a.l	ENSGT00940000156928	ENSGT00390000012419
Alpin marmot	MODERN SPECIES		PIGU (ENSMMMG00000023384)	DYNLRB1 (ENSMMMG00000023395)	ITCH (ENSMMMG00000023404)	ENSMMMG00000023413	AHCY (ENSMMMG00000023416)	ASIP (ENSMMMG00000023418)	EIF2S2 (ENSMMMG00000023422)	RALY (ENSMMMG00000023423)	CHMP4B (ENSMMMG00000023441)	ZNF341 (ENSMMMG00000023444)	PXMP4 (ENSMMMG00000023451)	E2F1 (ENSMMMG00000023454)	NECAB3 (ENSMMMG00000023457)	ACTL10 (ENSMMMG00000023461)	CBFA2T2 (ENSMMMG00000023462)	SNTA1 (ENSMMMG00000023469) #22	CDK5RAP1 (ENSMMMG00000023644) #23	ENSMMMG00000023646 ##24	BPIFB1 (ENSMMMG00000023647) #24	BPIFA1 (ENSMMMG00000023653) #25	BPIFA3 (ENSMMMG00000023655) #26	ENSMMMG00000023661	ENSMMMG00000023662	BPIFB4 (ENSMMMG00000023664) #28	BPIFB3 (ENSMMMG00000023666) #29	BPIFB6 (ENSMMMG00000023672) #30	BPIFB2 (ENSMMMG00000023676) #31	SUN5 (ENSMMMG00000023678) #32	EFCAB8 (ENSMMMG00000023682)	ENSMMMG00000023683	DNMT3B (ENSMMMG00000023686)
Marmotini_b	ANCESTRAL SPECIES	29	ENSGT00940000158853	ENSGT00390000011067.A.o.b	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24
Arctic ground squirrel	MODERN SPECIES	24	MAP1LC3A (ENSUPAG00010004647)	DYNLRB1 (ENSUPAG00010004657)	ITCH (ENSUPAG00010004671)	AHCY (ENSUPAG00010004706)	ASIP (ENSUPAG00010004712)	EIF2S2 (ENSUPAG00010004723)	RALY (ENSUPAG00010004731)	CHMP4B (ENSUPAG00010004793)	ZNF341 (ENSUPAG00010004795)	PXMP4 (ENSUPAG00010004822)	E2F1 (ENSUPAG00010004824)	NECAB3 (ENSUPAG00010004839)	ACTL10 (ENSUPAG00010004872)	C20orf144 (ENSUPAG00010004879)	CBFA2T2 (ENSUPAG00010004884)	SNTA1 (ENSUPAG00010004904) #22	CDK5RAP1 (ENSUPAG00010004922) #23	ENSUPAG00010004995	ENSUPAG00010004998 ##24	ENSUPAG00010005007 #24
Squirrel	MODERN SPECIES	161	PIGU (ENSSTOG00000014830)	MAP1LC3A (ENSSTOG00000006158)	ENSSTOG00000014820	ITCH (ENSSTOG00000014804)	AHCY (ENSSTOG00000003013)	ASIP (ENSSTOG00000003501)	EIF2S2 (ENSSTOG00000008821)	RALY (ENSSTOG00000008810)	CHMP4B (ENSSTOG00000005242)	ZNF341 (ENSSTOG00000002753)	PXMP4 (ENSSTOG00000002748)	E2F1 (ENSSTOG00000002735)	NECAB3 (ENSSTOG00000028643)	ACTL10 (ENSSTOG00000000902)	CBFA2T2 (ENSSTOG00000003478)	SNTA1 (ENSSTOG00000020522) #22	CDK5RAP1 (ENSSTOG00000005492) #23
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005003157	ENSSVLG00005003145	ENSSVLG00005003129	EIF2S2 (ENSSVLG00005003099)	ENSSVLG00005003066	CHMP4B (ENSSVLG00005003046)	ENSSVLG00005003036	ZNF341 (ENSSVLG00005003010)	PXMP4 (ENSSVLG00005002986)	E2F1 (ENSSVLG00005002971)	ACTL10 (ENSSVLG00005002962)	ENSSVLG00005002949	NECAB3 (ENSSVLG00005002907)	ENSSVLG00005002886	CBFA2T2 (ENSSVLG00005002847)	SNTA1 (ENSSVLG00005002824) #22	CDK5RAP1 (ENSSVLG00005002783) #23	ENSSVLG00005002725	BPIFB1 (ENSSVLG00005002680) #24	BPIFA1 (ENSSVLG00005002640) #25	BPIFA3 (ENSSVLG00005002605) #26	BPIFB4 (ENSSVLG00005002569) #28	BPIFB3 (ENSSVLG00005002532) #29	BPIFB6 (ENSSVLG00005002490) #30	BPIFB2 (ENSSVLG00005002451) #31	SUN5 (ENSSVLG00005002374) #32	ENSSVLG00005002338	ENSSVLG00005002322	ENSSVLG00005002127	COMMD7 (ENSSVLG00005002025)	NOL4L (ENSSVLG00005001985)
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419	ENSGT00940000157729	ENSGT00520000055578.a.a.c	ENSGT00940000153739.a.a.j
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00490000043329.a.a.a	ENSGT00940000156928	ENSGT00390000012419	ENSGT00940000157729	ENSGT00520000055578.a.a.c	ENSGT00940000153739.a.a.j
Hystricomorpha_b	ANCESTRAL SPECIES	16	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00490000043329.a.a.a.i.a	ENSGT00940000156928	ENSGT00390000012419	ENSGT00940000157729	ENSGT00520000055578.a.a.c	ENSGT00940000153739.a.a.j
Long-tailed chinchilla	MODERN SPECIES	129	MAP1LC3A (ENSCLAG00000016760)	DYNLRB1 (ENSCLAG00000016878)	ITCH (ENSCLAG00000016997)	AHCY (ENSCLAG00000017278)	ASIP (ENSCLAG00000017188)	ENSCLAG00000017263	RALY (ENSCLAG00000016899)	CHMP4B (ENSCLAG00000017205)	ZNF341 (ENSCLAG00000016902)	PXMP4 (ENSCLAG00000017245)	E2F1 (ENSCLAG00000017077)	NECAB3 (ENSCLAG00000017054)	ACTL10 (ENSCLAG00000018112)	ENSCLAG00000017072	CBFA2T2 (ENSCLAG00000017277)	SNTA1 (ENSCLAG00000015283) #22	CDK5RAP1 (ENSCLAG00000015460) #23	BPIFB1 (ENSCLAG00000016830) #24	BPIFA1 (ENSCLAG00000017206) #25	BPIFA3 (ENSCLAG00000016843) #26	BPIFB4 (ENSCLAG00000016722) #28	BPIFB3 (ENSCLAG00000016914) #29	BPIFB6 (ENSCLAG00000016956) #30	BPIFB2 (ENSCLAG00000017195) #31	SUN5 (ENSCLAG00000017254) #32	ENSCLAG00000017109	DNMT3B (ENSCLAG00000017043)	COMMD7 (ENSCLAG00000017227)	NOL4L (ENSCLAG00000017265)	ASXL1 (ENSCLAG00000017264)	KIF3B (ENSCLAG00000016984)
Degu	MODERN SPECIES	78	ASIP (ENSODEG00000013289)	ENSODEG00000020169	ENSODEG00000015189	ENSODEG00000012943	ENSODEG00000012151	ENSODEG00000012831	ENSODEG00000012366	ZNF341 (ENSODEG00000013884)	PXMP4 (ENSODEG00000015173)	E2F1 (ENSODEG00000012327)	ENSODEG00000013210	NECAB3 (ENSODEG00000012739)	ENSODEG00000013862	CBFA2T2 (ENSODEG00000012562)	ENSODEG00000019960	SNTA1 (ENSODEG00000012817) #22	CDK5RAP1 (ENSODEG00000013190) #23	BPIFB1 (ENSODEG00000012392) #24	BPIFA1 (ENSODEG00000011803) #25	BPIFA3 (ENSODEG00000011797) #26	ENSODEG00000013174	ENSODEG00000012886	ENSODEG00000012670	BPIFB4 (ENSODEG00000013037) #28	BPIFB3 (ENSODEG00000012502) #29	BPIFB6 (ENSODEG00000011706) #30	BPIFB2 (ENSODEG00000012498) #31	SUN5 (ENSODEG00000012284) #32	ENSODEG00000012036	DNMT3B (ENSODEG00000011753)	COMMD7 (ENSODEG00000014983)
Guinea pig	MODERN SPECIES	45	MAP1LC3A (ENSCPOG00000030093)	PIGU (ENSCPOG00000013806)	DYNLRB1 (ENSCPOG00000013798)	ITCH (ENSCPOG00000013787)	AHCY (ENSCPOG00000014740)	ASIP (ENSCPOG00000005139)	EIF2S2 (ENSCPOG00000040226)	RALY (ENSCPOG00000000309)	CHMP4B (ENSCPOG00000035794)	ZNF341 (ENSCPOG00000003820)	PXMP4 (ENSCPOG00000024804)	E2F1 (ENSCPOG00000001800)	ENSCPOG00000022109	NECAB3 (ENSCPOG00000020859)	CBFA2T2 (ENSCPOG00000001721)	SNTA1 (ENSCPOG00000005179) #22	CDK5RAP1 (ENSCPOG00000006663) #23	BPIFB1 (ENSCPOG00000005568) #24	BPIFA1 (ENSCPOG00000014220) #25	ENSCPOG00000013128 #26
Naked mole-rat female	MODERN SPECIES	6	ITCH (ENSHGLG00000005001)	AHCY (ENSHGLG00000009751)	ENSHGLG00000031940	RALY (ENSHGLG00000017779)	ENSHGLG00000042490	ENSHGLG00000032344	ENSHGLG00000041357	ZNF341 (ENSHGLG00000013786)	PXMP4 (ENSHGLG00000016991)	ENSHGLG00000041428	E2F1 (ENSHGLG00000009301)	ENSHGLG00000009659	CBFA2T2 (ENSHGLG00000018266)	ENSHGLG00000047164	ENSHGLG00000018147	SNTA1 (ENSHGLG00000006583) #22	CDK5RAP1 (ENSHGLG00000005146) #23	ENSHGLG00000039669
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a
Kangaroo rat	MODERN SPECIES	332	Trp53inp2 (ENSDORG00000026160)	Pigu (ENSDORG00000001715)	ENSDORG00000029351	Dynlrb1 (ENSDORG00000028607)	Itch (ENSDORG00000027257)	ENSDORG00000012590	a (ENSDORG00000013768)	Eif2s2 (ENSDORG00000001920)	Raly (ENSDORG00000013400)	Chmp4b (ENSDORG00000011539)	Zfp341 (ENSDORG00000000005)	Pxmp4 (ENSDORG00000030129)	E2f1 (ENSDORG00000013793)	Necab3 (ENSDORG00000013792)	Cbfa2t2 (ENSDORG00000001656)	Snta1 (ENSDORG00000029237) #22	Cdk5rap1 (ENSDORG00000004622) #23	Bpifb5 (ENSDORG00000028380) ##24	Bpifb1 (ENSDORG00000002282) #24	ENSDORG00000002276 #25	Bpifa3 (ENSDORG00000002275) #26	Bpifb4 (ENSDORG00000001190) #28	Bpifb3 (ENSDORG00000029748) #29	Bpifb6 (ENSDORG00000004324) #30	Bpifb2 (ENSDORG00000004323) #31	Mapre1 (ENSDORG00000023413)	ENSDORG00000012834	Commd7 (ENSDORG00000002116)	Nol4l (ENSDORG00000027893)	ENSDORG00000028887	ENSDORG00000016544
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a
Lesser Egyptian jerboa	MODERN SPECIES	149	Map1lc3a (ENSJJAG00000010977)	ENSJJAG00000005483	Itch (ENSJJAG00000000211)	ENSJJAG00000022935	a (ENSJJAG00000018926)	ENSJJAG00000001144	Eif2s2 (ENSJJAG00000014081)	Raly (ENSJJAG00000008473)	Chmp4b (ENSJJAG00000013547)	Zfp341 (ENSJJAG00000020905)	Pxmp4 (ENSJJAG00000016829)	E2f1 (ENSJJAG00000022378)	1700003F12Rik (ENSJJAG00000010475)	Necab3 (ENSJJAG00000020960)	Cbfa2t2 (ENSJJAG00000012293)	Snta1 (ENSJJAG00000020267) #22	ENSJJAG00000016210	Bpifb5 (ENSJJAG00000016027) ##24	Bpifb1 (ENSJJAG00000023259) #24	ENSJJAG00000022519 #25	Bpifa3 (ENSJJAG00000012935) #26	Bpifb4 (ENSJJAG00000019678) #28	ENSJJAG00000019744 #30	Bpifb2 (ENSJJAG00000017859) #31	Sun5 (ENSJJAG00000021388) #32	Mapre1 (ENSJJAG00000018249)	ENSJJAG00000000621	Commd7 (ENSJJAG00000010654)	ENSJJAG00000000449	ENSJJAG00000021569	Kif3b (ENSJJAG00000019431)
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a.d #25	ENSGT01100000263546.d.b.a.a.a.a.c #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00940000171996	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a.d #25	ENSGT01100000263546.d.b.a.a.a.a.c #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00940000171996	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804.y.b	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a.d #25	ENSGT01100000263546.d.b.a.a.a.a.c #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00490000043329.a.a.a
Chinese hamster chok1gshd	MODERN SPECIES	188	Dynlrb1 (ENSCGRG00001013277)	Itch (ENSCGRG00001020207)	ENSCGRG00001012673	a (ENSCGRG00001021768)	ENSCGRG00001004778	ENSCGRG00001001614	Raly (ENSCGRG00001014652)	Chmp4b (ENSCGRG00001000652)	Zfp341 (ENSCGRG00001014101)	Pxmp4 (ENSCGRG00001010342)	E2f1 (ENSCGRG00001001729)	Necab3 (ENSCGRG00001013760)	Actl10 (ENSCGRG00001006945)	1700003F12Rik (ENSCGRG00001012971)	Cbfa2t2 (ENSCGRG00001014529)	Snta1 (ENSCGRG00001016422) #22	Cdk5rap1 (ENSCGRG00001020687) #23	ENSCGRG00001018519	ENSCGRG00001021876	Bpifb5 (ENSCGRG00001022241) ##24	Bpifb1 (ENSCGRG00001022649) #24	Bpifa5 (ENSCGRG00001018207) #25	Bpifa1 (ENSCGRG00001014265) #25	Bpifa3 (ENSCGRG00001017514) #26	Bpifa2 (ENSCGRG00001020519) #27	Bpifa6 (ENSCGRG00001023934)	Bpifb4 (ENSCGRG00001014345) #28	Bpifb3 (ENSCGRG00001020775) #29	Bpifb6 (ENSCGRG00001023599) #30	Bpifb2 (ENSCGRG00001009296) #31	Sun5 (ENSCGRG00001017538) #32
Golden Hamster	MODERN SPECIES	791	Trp53inp2 (ENSMAUG00000004915)	Pigu (ENSMAUG00000012275)	Dynlrb1 (ENSMAUG00000019405)	Itch (ENSMAUG00000001009)	ENSMAUG00000006591	a (ENSMAUG00000021663)	ENSMAUG00000009771	Raly (ENSMAUG00000005739)	Chmp4b (ENSMAUG00000020158)	Zfp341 (ENSMAUG00000011481)	Pxmp4 (ENSMAUG00000015504)	E2f1 (ENSMAUG00000000913)	Necab3 (ENSMAUG00000015672)	1700003F12Rik (ENSMAUG00000022072)	Cbfa2t2 (ENSMAUG00000001412)	Snta1 (ENSMAUG00000013984) #22	Cdk5rap1 (ENSMAUG00000000980) #23	Bpifb5 (ENSMAUG00000008139) ##24	Bpifb1 (ENSMAUG00000011247) #24	Bpifa5 (ENSMAUG00000012713) #25	Bpifa1 (ENSMAUG00000014646) #25	Bpifa3 (ENSMAUG00000013387) #26
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a.d #25	ENSGT01100000263546.d.b.a.a.a.a.c #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00940000171996	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32
Northern American deer mouse	MODERN SPECIES	17	Dynlrb1 (ENSPEMG00000001641)	Itch (ENSPEMG00000021623)	ENSPEMG00000024071	a (ENSPEMG00000023599)	Eif2s2 (ENSPEMG00000023172)	Raly (ENSPEMG00000021466)	Chmp4b (ENSPEMG00000021658)	Zfp341 (ENSPEMG00000022506)	Pxmp4 (ENSPEMG00000023523)	E2f1 (ENSPEMG00000018049)	Actl10 (ENSPEMG00000026578)	1700003F12Rik (ENSPEMG00000031171)	Necab3 (ENSPEMG00000011260)	Cbfa2t2 (ENSPEMG00000023470)	ENSPEMG00000030394	Snta1 (ENSPEMG00000003510) #22	Cdk5rap1 (ENSPEMG00000017045) #23	ENSPEMG00000011960	Bpifb5 (ENSPEMG00000007792) ##24	Bpifb1 (ENSPEMG00000018971) #24	Bpifa5 (ENSPEMG00000011773) #25	Bpifa1 (ENSPEMG00000014511) #25	Bpifa3 (ENSPEMG00000008523) #26	ENSPEMG00000028840	ENSPEMG00000027075	Bpifa2 (ENSPEMG00000015949) #27	Bpifa6 (ENSPEMG00000016037)	Bpifb4 (ENSPEMG00000008153) #28	Bpifb3 (ENSPEMG00000016514) #29	Bpifb6 (ENSPEMG00000009388) #30	Bpifb2 (ENSPEMG00000001773) #31
Prairie vole	MODERN SPECIES	357	Map1lc3a (ENSMOCG00000022232)	Dynlrb1 (ENSMOCG00000001553)	Itch (ENSMOCG00000015148)	ENSMOCG00000021599	a (ENSMOCG00000006735)	Eif2s2 (ENSMOCG00000012809)	Raly (ENSMOCG00000009450)	ENSMOCG00000017228	Chmp4b (ENSMOCG00000022208)	Zfp341 (ENSMOCG00000004075)	Pxmp4 (ENSMOCG00000003745)	E2f1 (ENSMOCG00000012464)	Necab3 (ENSMOCG00000000497)	1700003F12Rik (ENSMOCG00000019597)	Cbfa2t2 (ENSMOCG00000015541)	Snta1 (ENSMOCG00000005630) #22	Cdk5rap1 (ENSMOCG00000002846) #23	Bpifb5 (ENSMOCG00000002643) ##24	Bpifb1 (ENSMOCG00000011657) #24	Bpifa5 (ENSMOCG00000015053) #25	Bpifa1 (ENSMOCG00000022067) #25	Bpifa3 (ENSMOCG00000007021) #26	Bpifa2 (ENSMOCG00000020017) #27	Bpifa6 (ENSMOCG00000013390)	Nsfl1c (ENSMOCG00000002492)	Fkbp1a (ENSMOCG00000015631)	Sdcbp2 (ENSMOCG00000018189)	Snph (ENSMOCG00000019255)	Rad21l (ENSMOCG00000001417)	Tmem74b (ENSMOCG00000012931)	Psmf1 (ENSMOCG00000017241)
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a.d #25	ENSGT01100000263546.d.b.a.a.a.a.c #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00940000171996	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32
Mus	ANCESTRAL SPECIES	1	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00860000136314	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a.d #25	ENSGT01100000263546.d.b.a.a.a.a.c #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Mus_A	ANCESTRAL SPECIES		ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00860000136314	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a.d #25	ENSGT01100000263546.d.b.a.a.a.a.c #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00860000136314	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a.d #25	ENSGT01100000263546.d.b.a.a.a.a.c #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Mus_C	ANCESTRAL SPECIES		ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00860000136314	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a.d #25	ENSGT01100000263546.d.b.a.a.a.a.c #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a
Steppe mouse	MODERN SPECIES	27	ENSMSIG00000001894	a (ENSMSIG00000001870)	Eif2s2 (ENSMSIG00000001803)	Raly (ENSMSIG00000001654)	ENSMSIG00000001612	Chmp4b (ENSMSIG00000001595)	Zfp341 (ENSMSIG00000001480)	ENSMSIG00000001473	Pxmp4 (ENSMSIG00000001438)	E2f1 (ENSMSIG00000001395)	Actl10 (ENSMSIG00000001387)	1700003F12Rik (ENSMSIG00000001368)	Necab3 (ENSMSIG00000001205)	Cbfa2t2 (ENSMSIG00000001148)	ENSMSIG00000001135	Snta1 (ENSMSIG00000001125) #22	Cdk5rap1 (ENSMSIG00000001010) #23
spretus	MODERN SPECIES	11	Itch (MGP_SPRETEiJ_G0025445)	MGP_SPRETEiJ_G0025444	Eif2s2 (MGP_SPRETEiJ_G0025443)	a (MGP_SPRETEiJ_G0025442)	Raly (MGP_SPRETEiJ_G0025441)	MGP_SPRETEiJ_G0025440	Chmp4b (MGP_SPRETEiJ_G0025439)	MGP_SPRETEiJ_G0025438	MGP_SPRETEiJ_G0025437	Pxmp4 (MGP_SPRETEiJ_G0025436)	E2f1 (MGP_SPRETEiJ_G0025435)	Actl10 (MGP_SPRETEiJ_G0025434)	1700003F12Rik (MGP_SPRETEiJ_G0025433)	Necab3 (MGP_SPRETEiJ_G0025432)	Cbfa2t2 (MGP_SPRETEiJ_G0025431)	Snta1 (MGP_SPRETEiJ_G0025430) #22	Cdk5rap1 (MGP_SPRETEiJ_G0025429) #23	MGP_SPRETEiJ_G0025428	MGP_SPRETEiJ_G0025427	Bpifb5 (MGP_SPRETEiJ_G0025426) ##24	Bpifb1 (MGP_SPRETEiJ_G0025425) #24	Bpifa5 (MGP_SPRETEiJ_G0025424) #25	Bpifa1 (MGP_SPRETEiJ_G0025423) #25	Bpifa3 (MGP_SPRETEiJ_G0025422) #26	Bpifa2 (MGP_SPRETEiJ_G0025421) #27	Bpifa6 (MGP_SPRETEiJ_G0025420)	MGP_SPRETEiJ_G0025419 #28	Bpifb3 (MGP_SPRETEiJ_G0025418) #29	Bpifb6 (MGP_SPRETEiJ_G0025417) #30	Bpifb2 (MGP_SPRETEiJ_G0025416) #31	Sun5 (MGP_SPRETEiJ_G0025415) #32
Mouse	MODERN SPECIES	11	Map1lc3a (ENSMUSG00000027602)	Dynlrb1 (ENSMUSG00000047459)	Itch (ENSMUSG00000027598)	Ahcy (ENSMUSG00000027597)	Eif2s2 (ENSMUSG00000074656)	a (ENSMUSG00000027596)	Raly (ENSMUSG00000027593)	Chmp4b (ENSMUSG00000038467)	Zfp341 (ENSMUSG00000059842)	Pxmp4 (ENSMUSG00000000876)	E2f1 (ENSMUSG00000027490)	Actl10 (ENSMUSG00000078129)	1700003F12Rik (ENSMUSG00000038523)	Necab3 (ENSMUSG00000027489)	Cbfa2t2 (ENSMUSG00000038533)	Snta1 (ENSMUSG00000027488) #22	Cdk5rap1 (ENSMUSG00000027487) #23	Bpifb9b (ENSMUSG00000067996)	Bpifb9a (ENSMUSG00000067998)	Bpifb5 (ENSMUSG00000038572) ##24	Bpifb1 (ENSMUSG00000027485) #24	Bpifa5 (ENSMUSG00000027484) #25	Bpifa1 (ENSMUSG00000027483) #25	Bpifa3 (ENSMUSG00000027482) #26	Bpifa2 (ENSMUSG00000042459) #27	Bpifa6 (ENSMUSG00000078998)	Bpifb4 (ENSMUSG00000074665) #28	Bpifb3 (ENSMUSG00000068008) #29	Bpifb6 (ENSMUSG00000068009) #30	Bpifb2 (ENSMUSG00000027481) #31	Sun5 (ENSMUSG00000027480) #32
Ryukyu mouse	MODERN SPECIES	11	Itch (MGP_CAROLIEiJ_G0024523)	MGP_CAROLIEiJ_G0024522	Eif2s2 (MGP_CAROLIEiJ_G0024521)	a (MGP_CAROLIEiJ_G0024520)	Raly (MGP_CAROLIEiJ_G0024519)	MGP_CAROLIEiJ_G0024518	Chmp4b (MGP_CAROLIEiJ_G0024517)	Zfp341 (MGP_CAROLIEiJ_G0024516)	MGP_CAROLIEiJ_G0024515	Pxmp4 (MGP_CAROLIEiJ_G0024514)	E2f1 (MGP_CAROLIEiJ_G0024513)	Actl10 (MGP_CAROLIEiJ_G0024512)	1700003F12Rik (MGP_CAROLIEiJ_G0024511)	Necab3 (MGP_CAROLIEiJ_G0024510)	Cbfa2t2 (MGP_CAROLIEiJ_G0024509)	Snta1 (MGP_CAROLIEiJ_G0024508) #22	MGP_CAROLIEiJ_G0024507 #23	Bpifb5 (MGP_CAROLIEiJ_G0024505) ##24	Bpifb1 (MGP_CAROLIEiJ_G0024504) #24	Bpifa5 (MGP_CAROLIEiJ_G0024503) #25	Bpifa1 (MGP_CAROLIEiJ_G0024502) #25	Bpifa3 (MGP_CAROLIEiJ_G0024501) #26	Bpifa2 (MGP_CAROLIEiJ_G0024500) #27	Bpifa6 (MGP_CAROLIEiJ_G0024499)	MGP_CAROLIEiJ_G0024498 #28	Bpifb3 (MGP_CAROLIEiJ_G0024497) #29	MGP_CAROLIEiJ_G0024496 #30	Bpifb2 (MGP_CAROLIEiJ_G0024495) #31	Sun5 (MGP_CAROLIEiJ_G0024494) #32	MGP_CAROLIEiJ_G0024493	Mapre1 (MGP_CAROLIEiJ_G0024492)
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025967	MGP_PahariEiJ_G0025966	Eif2s2 (MGP_PahariEiJ_G0025965)	a (MGP_PahariEiJ_G0025964)	Raly (MGP_PahariEiJ_G0025963)	MGP_PahariEiJ_G0025962	Chmp4b (MGP_PahariEiJ_G0025961)	Zfp341 (MGP_PahariEiJ_G0025960)	MGP_PahariEiJ_G0025959	Pxmp4 (MGP_PahariEiJ_G0025958)	E2f1 (MGP_PahariEiJ_G0025957)	Actl10 (MGP_PahariEiJ_G0025956)	1700003F12Rik (MGP_PahariEiJ_G0025955)	Necab3 (MGP_PahariEiJ_G0025954)	Cbfa2t2 (MGP_PahariEiJ_G0025953)	Snta1 (MGP_PahariEiJ_G0025952) #22	Cdk5rap1 (MGP_PahariEiJ_G0025951) #23	Bpifb5 (MGP_PahariEiJ_G0025949) ##24	Bpifb1 (MGP_PahariEiJ_G0025948) #24	Bpifa5 (MGP_PahariEiJ_G0025947) #25	Bpifa1 (MGP_PahariEiJ_G0025946) #25	Bpifa3 (MGP_PahariEiJ_G0025945) #26	MGP_PahariEiJ_G0025944	MGP_PahariEiJ_G0025943 #27	Bpifa6 (MGP_PahariEiJ_G0025942)	MGP_PahariEiJ_G0025941 #28	Bpifb3 (MGP_PahariEiJ_G0025940) #29	Bpifb6 (MGP_PahariEiJ_G0025939) #30	Bpifb2 (MGP_PahariEiJ_G0025938) #31	Sun5 (MGP_PahariEiJ_G0025937) #32	MGP_PahariEiJ_G0025936
Rat	MODERN SPECIES	13	Asip (ENSRNOG00000017701)	Eif2s2 (ENSRNOG00000017447)	Raly (ENSRNOG00000017405)	LOC690597 (ENSRNOG00000055182)	Chmp4b (ENSRNOG00000046585)	AABR07054368.1 (ENSRNOG00000029996)	ENSRNOG00000063087	Zfp341 (ENSRNOG00000017086)	Pxmp4 (ENSRNOG00000016975)	Actl10 (ENSRNOG00000036864)	RGD1561517 (ENSRNOG00000016583)	E2f1 (ENSRNOG00000016708)	AABR07054362.1 (ENSRNOG00000050899)	Sms-ps2 (ENSRNOG00000031275)	Cbfa2t2 (ENSRNOG00000016352)	Snta1 (ENSRNOG00000016062) #22	ENSRNOG00000064935 #23	LOC690507 (ENSRNOG00000015637)	Bpifb5 (ENSRNOG00000025238) ##24	Bpifb1 (ENSRNOG00000015468) #24	Bpifa5 (ENSRNOG00000013908) #25	Bpifa1 (ENSRNOG00000013859) #25	Bpifa3 (ENSRNOG00000013778) #26	Bpifa2f (ENSRNOG00000036870)	Bpifa2 (ENSRNOG00000013540) #27	Bpifa6 (ENSRNOG00000043258)	Bpifb3 (ENSRNOG00000034174) #28	Bpifb6 (ENSRNOG00000013371) #30	Bpifb2 (ENSRNOG00000012197) #31	Sun5 (ENSRNOG00000027221) #32	Efcab8 (ENSRNOG00000070431)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1287																Snta1 (ENSNGAG00000014553) #22	Cdk5rap1 (ENSNGAG00000016976) #23
Laurasiatheria	ANCESTRAL SPECIES	17	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00930000151259
Laurasiatheria_a	ANCESTRAL SPECIES	18	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Artiodactyla	ANCESTRAL SPECIES	18	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Suina	ANCESTRAL SPECIES	9	ENSGT00530000063829.C	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00930000151259	ENSGT00490000043329.a.a.a.pb	ENSGT00940000156928
Chacoan peccary	MODERN SPECIES	801	MAP1LC3A (ENSCWAG00000006108)	DYNLRB1 (ENSCWAG00000006128)	ITCH (ENSCWAG00000006169)	AHCY (ENSCWAG00000006316)	ASIP (ENSCWAG00000006347)	EIF2S2 (ENSCWAG00000006369)	RALY (ENSCWAG00000006424)	ENSCWAG00000006485	ZNF341 (ENSCWAG00000006507)	PXMP4 (ENSCWAG00000006623)	E2F1 (ENSCWAG00000006652)	NECAB3 (ENSCWAG00000006683)	ACTL10 (ENSCWAG00000006716)	ENSCWAG00000006723	CBFA2T2 (ENSCWAG00000006761)	SNTA1 (ENSCWAG00000006848) #22	CDK5RAP1 (ENSCWAG00000006898) #23	ENSCWAG00000006962	ENSCWAG00000007007	BPIFB1 (ENSCWAG00000007056) #24	BPIFA1 (ENSCWAG00000007132) #25	ENSCWAG00000007185 #26	BPIFA2 (ENSCWAG00000007236) #27	BPIFB4 (ENSCWAG00000007278) #28	BPIFB3 (ENSCWAG00000007348) #29	BPIFB6 (ENSCWAG00000007416) #30	BPIFB2 (ENSCWAG00000007471) #31	SUN5 (ENSCWAG00000007557) #32	ENSCWAG00000007672	MAPRE1 (ENSCWAG00000007693)	DNMT3B (ENSCWAG00000007767)
Pig	MODERN SPECIES	8	ENSSSCG00000043574	ITCH (ENSSSCG00000007280)	AHCY (ENSSSCG00000007278)	ASIP (ENSSSCG00000053652)	EIF2S2 (ENSSSCG00000026617)	RALY (ENSSSCG00000007275)	CHMP4B (ENSSSCG00000007272)	ZNF341 (ENSSSCG00000021769)	ENSSSCG00000034625	E2F1 (ENSSSCG00000007268)	ACTL10 (ENSSSCG00000044750)	ENSSSCG00000047940	NECAB3 (ENSSSCG00000029626)	CBFA2T2 (ENSSSCG00000027410)	ENSSSCG00000034263	SNTA1 (ENSSSCG00000063004) #22	CDK5RAP1 (ENSSSCG00000007264) #23	ENSSSCG00000007263	ENSSSCG00000007262 ##24	BPIFB1 (ENSSSCG00000007261) #24	BPIFA1 (ENSSSCG00000007260) #25	BPIFA3 (ENSSSCG00000024787) #26	BPIFA2 (ENSSSCG00000007259) #27	BPIFB4 (ENSSSCG00000029295) #28	BPIFB3 (ENSSSCG00000026137) #29	BPIFB6 (ENSSSCG00000025052) #30	BPIFB2 (ENSSSCG00000029714) #31	SUN5 (ENSSSCG00000007256) #32	ENSSSCG00000059506	MAPRE1 (ENSSSCG00000007253)	DNMT3B (ENSSSCG00000007252)
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Cetacea	ANCESTRAL SPECIES	3	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00930000151259	ENSGT00490000043329.a.a.a.ob.b	ENSGT00940000156928	ENSGT00390000012419	ENSGT00940000157729
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT00490000043329.a.a.a.pb	ENSGT01100000263546.e.a.b #29	ENSGT00940000155225 #32	ENSGT00930000151259	ENSGT00490000043329.a.a.a.ob.b	ENSGT00940000156928	ENSGT00390000012419	ENSGT00940000157729	ENSGT00520000055578.a.a.c
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT00490000043329.a.a.a.pb	ENSGT00940000155225 #32	ENSGT00930000151259	ENSGT00490000043329.a.a.a.ob.b	ENSGT00940000156928	ENSGT00390000012419	ENSGT00940000157729	ENSGT00520000055578.a.a.c	ENSGT00940000153739.a.a.j
Dolphin	MODERN SPECIES	278																SNTA1 (ENSTTRG00000010869) #22	CDK5RAP1 (ENSTTRG00000010868) #23	ENSTTRG00000010866	BPIFB1 (ENSTTRG00000010865) #24	BPIFA1 (ENSTTRG00000010864) #25	BPIFA3 (ENSTTRG00000010863) #26	ENSTTRG00000010861 #27
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.e.a.a.a.b #28	ENSGT00490000043329.a.a.a.pb	ENSGT00940000155225 #32	ENSGT00930000151259	ENSGT00490000043329.a.a.a.ob.b	ENSGT00940000156928	ENSGT00390000012419	ENSGT00940000157729	ENSGT00520000055578.a.a.c	ENSGT00940000153739.a.a.j	ENSGT00390000015634
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361.a #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.e.a.a.a.b #28	ENSGT00940000155225 #32	ENSGT00930000151259	ENSGT00490000043329.a.a.a.ob.b	ENSGT00490000043329.a.a.a.pb	ENSGT00940000156928	ENSGT00390000012419	ENSGT00940000157729	ENSGT00520000055578.a.a.c	ENSGT00940000153739.a.a.j	ENSGT00390000015634
Narwhal	MODERN SPECIES	299	PIGU (ENSMMNG00015001564)	MAP1LC3A (ENSMMNG00015001604)	DYNLRB1 (ENSMMNG00015001633)	ITCH (ENSMMNG00015001660)	AHCY (ENSMMNG00015001713)	ENSMMNG00015001751	EIF2S2 (ENSMMNG00015001772)	RALY (ENSMMNG00015001794)	ENSMMNG00015001817	ZNF341 (ENSMMNG00015001854)	PXMP4 (ENSMMNG00015001891)	E2F1 (ENSMMNG00015001904)	NECAB3 (ENSMMNG00015001933)	ENSMMNG00015001984	CBFA2T2 (ENSMMNG00015002029)	SNTA1 (ENSMMNG00015002113) #22	CDK5RAP1 (ENSMMNG00015002156) #23	BPIFB1 (ENSMMNG00015002195) #24	BPIFA1 (ENSMMNG00015002245) #25	BPIFA3 (ENSMMNG00015002319) #26	BPIFB4 (ENSMMNG00015002370) #28	SUN5 (ENSMMNG00015002432) #32	ENSMMNG00015002504	ENSMMNG00015002532	DNMT3B (ENSMMNG00015002780)	COMMD7 (ENSMMNG00015003283)	NOL4L (ENSMMNG00015003321)	ASXL1 (ENSMMNG00015003413)	KIF3B (ENSMMNG00015003500)	POFUT1 (ENSMMNG00015003526)	PLAGL2 (ENSMMNG00015003544)
Beluga whale	MODERN SPECIES	36	MAP1LC3A (ENSDLEG00000018191)	DYNLRB1 (ENSDLEG00000018207)	ITCH (ENSDLEG00000018226)	AHCY (ENSDLEG00000018252)	ASIP (ENSDLEG00000018261)	EIF2S2 (ENSDLEG00000018274)	RALY (ENSDLEG00000018282)	CHMP4B (ENSDLEG00000018298)	ZNF341 (ENSDLEG00000018304)	PXMP4 (ENSDLEG00000018317)	E2F1 (ENSDLEG00000018330)	NECAB3 (ENSDLEG00000018392)	ACTL10 (ENSDLEG00000018420)	ENSDLEG00000018425	CBFA2T2 (ENSDLEG00000018440)	SNTA1 (ENSDLEG00000018449) #22	ENSDLEG00000018457 #23	ENSDLEG00000018464 #23	ENSDLEG00000018481 #24	BPIFA1 (ENSDLEG00000018496) #25	BPIFA3 (ENSDLEG00000018509) #26	BPIFB4 (ENSDLEG00000018531) #28	ENSDLEG00000018557	DNMT3B (ENSDLEG00000018581)	COMMD7 (ENSDLEG00000018629)	NOL4L (ENSDLEG00000018639)	ASXL1 (ENSDLEG00000018668)	KIF3B (ENSDLEG00000018749)	POFUT1 (ENSDLEG00000018766)	PLAGL2 (ENSDLEG00000018773)	ENSDLEG00000018777
Vaquita	MODERN SPECIES	6	TP53INP2 (ENSPSNG00000012935)	PIGU (ENSPSNG00000012993)	MAP1LC3A (ENSPSNG00000013092)	ITCH (ENSPSNG00000013334)	ENSPSNG00000014022	ASIP (ENSPSNG00000014123)	EIF2S2 (ENSPSNG00000014204)	RALY (ENSPSNG00000014290)	CHMP4B (ENSPSNG00000014408)	ZNF341 (ENSPSNG00000014477)	PXMP4 (ENSPSNG00000014910)	E2F1 (ENSPSNG00000014974)	NECAB3 (ENSPSNG00000015043)	ENSPSNG00000015208	CBFA2T2 (ENSPSNG00000015283)	SNTA1 (ENSPSNG00000015499) #22	CDK5RAP1 (ENSPSNG00000004778) #23	BPIFB1 (ENSPSNG00000004841) #24	BPIFA1 (ENSPSNG00000004902) #25	BPIFA3 (ENSPSNG00000004966) #26	SUN5 (ENSPSNG00000005025) #32	ENSPSNG00000005099	MAPRE1 (ENSPSNG00000005125)	DNMT3B (ENSPSNG00000005285)	COMMD7 (ENSPSNG00000005578)	NOL4L (ENSPSNG00000005632)	ASXL1 (ENSPSNG00000005728)	KIF3B (ENSPSNG00000005861)	POFUT1 (ENSPSNG00000005902)	PLAGL2 (ENSPSNG00000005936)	ENSPSNG00000005961
Sperm whale	MODERN SPECIES	5	ACSS2 (ENSPCTG00005008347)	GGT7 (ENSPCTG00005008516)	NCOA6 (ENSPCTG00005008566)	TP53INP2 (ENSPCTG00005008663)	PIGU (ENSPCTG00005008727)	ENSPCTG00005009176	MAP1LC3A (ENSPCTG00005009227)	ENSPCTG00005009300	ENSPCTG00005009432	ITCH (ENSPCTG00005009484)	EIF2S2 (ENSPCTG00005009850)	RALY (ENSPCTG00005009899)	CHMP4B (ENSPCTG00005009997)	ZNF341 (ENSPCTG00005010042)	ENSPCTG00005010096	SNTA1 (ENSPCTG00005010299) #22	CDK5RAP1 (ENSPCTG00005010350) #23	BPIFA1 (ENSPCTG00005010475) #25	BPIFA3 (ENSPCTG00005010684) #26	BPIFB3 (ENSPCTG00005010805) #29	SUN5 (ENSPCTG00005011002) #32	ENSPCTG00005011260	MAPRE1 (ENSPCTG00005011307)	DNMT3B (ENSPCTG00005011472)	COMMD7 (ENSPCTG00005012985)	NOL4L (ENSPCTG00005013151)	ASXL1 (ENSPCTG00005013333)	KIF3B (ENSPCTG00005013787)	TM9SF4 (ENSPCTG00005013852)	HCK (ENSPCTG00005013922)	CCM2L (ENSPCTG00005014508)
Blue whale	MODERN SPECIES	6	ENSBMSG00010014323	ENSBMSG00010014355	AHCY (ENSBMSG00010014387)	ENSBMSG00010014441	EIF2S2 (ENSBMSG00010014478)	RALY (ENSBMSG00010014524)	ENSBMSG00010014552	ZNF341 (ENSBMSG00010014577)	PXMP4 (ENSBMSG00010014607)	E2F1 (ENSBMSG00010014642)	NECAB3 (ENSBMSG00010014701)	ACTL10 (ENSBMSG00010014804)	ENSBMSG00010014818	ENSBMSG00010014841	CBFA2T2 (ENSBMSG00010014897)	SNTA1 (ENSBMSG00010014974) #22	CDK5RAP1 (ENSBMSG00010015008) #23	BPIFB1 (ENSBMSG00010015057) #24	BPIFA1 (ENSBMSG00010015165) #25	BPIFA3 (ENSBMSG00010015251) #26	BPIFB4 (ENSBMSG00010015330) #28	BPIFB3 (ENSBMSG00010015474) #29	BPIFB6 (ENSBMSG00010015545) #30	BPIFB2 (ENSBMSG00010015628) #31	ENSBMSG00010015685	MAPRE1 (ENSBMSG00010015710)	DNMT3B (ENSBMSG00010015879)	COMMD7 (ENSBMSG00010016369)	ENSBMSG00010016439	NOL4L (ENSBMSG00010016482)	ASXL1 (ENSBMSG00010012180)
Pecora	ANCESTRAL SPECIES	9	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00950000183176.a.s.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a.t	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b.a #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Yarkand deer	MODERN SPECIES	15	DYNLRB1 (ENSCHYG00000022408)	ITCH (ENSCHYG00000021902)	ENSCHYG00000021816	ASIP (ENSCHYG00000021759)	EIF2S2 (ENSCHYG00000021669)	RALY (ENSCHYG00000021487)	CHMP4B (ENSCHYG00000021413)	ZNF341 (ENSCHYG00000021267)	PXMP4 (ENSCHYG00000021195)	E2F1 (ENSCHYG00000021119)	ACTL10 (ENSCHYG00000021085)	ENSCHYG00000021007	NECAB3 (ENSCHYG00000020779)	ENSCHYG00000020718	CBFA2T2 (ENSCHYG00000020600)	SNTA1 (ENSCHYG00000020536) #22	ENSCHYG00000020441	ENSCHYG00000020289 ##24	CDK5RAP1 (ENSCHYG00000019777) #23	BPIFB1 (ENSCHYG00000019627) #24	BPIFA1 (ENSCHYG00000019488) #25	BPIFA3 (ENSCHYG00000019399) #26	ENSCHYG00000019367	ENSCHYG00000019281 #27	ENSCHYG00000019207 #27	ENSCHYG00000019160	BPIFB4 (ENSCHYG00000018989) #28	BPIFB3 (ENSCHYG00000018802) #29	BPIFB6 (ENSCHYG00000018569) #30	BPIFB2 (ENSCHYG00000018354) #31	SUN5 (ENSCHYG00000017917) #32
Percora_a	ANCESTRAL SPECIES	10	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00950000183176.a.s.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a.t	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b.a #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Bovidae	ANCESTRAL SPECIES	10	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a.s.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b.a.b #27	ENSGT01100000263546.d.b.a.b.b #27	ENSGT01100000263546.d.b.a.b.a.a #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31
Caprinae	ANCESTRAL SPECIES	21	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a.s.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b.a.b #27	ENSGT00950000183604.b.b	ENSGT00950000183604.b.a	ENSGT01100000263546.d.b.a.b.a.a #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Goat	MODERN SPECIES	4	DYNLRB1 (ENSCHIG00000017947)	ITCH (ENSCHIG00000013191)	AHCY (ENSCHIG00000026741)	ASIP (ENSCHIG00000014323)	ENSCHIG00000012008	ENSCHIG00000026317	RALY (ENSCHIG00000026609)	CHMP4B (ENSCHIG00000015320)	ZNF341 (ENSCHIG00000018677)	PXMP4 (ENSCHIG00000019935)	E2F1 (ENSCHIG00000015683)	ACTL10 (ENSCHIG00000002177)	ENSCHIG00000024263	NECAB3 (ENSCHIG00000024415)	ENSCHIG00000017263	SNTA1 (ENSCHIG00000026424) #22	CDK5RAP1 (ENSCHIG00000026048) #23	ENSCHIG00000006775 ##24	BPIFB1 (ENSCHIG00000017212) #24	BPIFA1 (ENSCHIG00000024834) #25	BPIFA3 (ENSCHIG00000019106) #26	ENSCHIG00000021482 #27	ENSCHIG00000023902	ENSCHIG00000014390 #27	ENSCHIG00000021281	ENSCHIG00000001593	ENSCHIG00000009057	BPIFB4 (ENSCHIG00000015953) #28	BPIFB3 (ENSCHIG00000023551) #29	BPIFB6 (ENSCHIG00000019460) #30	BPIFB2 (ENSCHIG00000026759) #31
Rambouillet Sheep	MODERN SPECIES	4	PIGU (ENSOARG00020013640)	MAP1LC3A (ENSOARG00020013584)	DYNLRB1 (ENSOARG00020013544)	ITCH (ENSOARG00020013255)	AHCY (ENSOARG00020012830)	ENSOARG00020012697	RALY (ENSOARG00020012493)	CHMP4B (ENSOARG00020012426)	ZNF341 (ENSOARG00020012178)	PXMP4 (ENSOARG00020012090)	E2F1 (ENSOARG00020011997)	ENSOARG00020011959	NECAB3 (ENSOARG00020011215)	ENSOARG00020011066	ENSOARG00020011013	SNTA1 (ENSOARG00020010934) #22	CDK5RAP1 (ENSOARG00020010445) #23	ENSOARG00020010310 ##24	BPIFA1 (ENSOARG00020009831) #25	BPIFA3 (ENSOARG00020009757) #26	ENSOARG00020009734 #27	ENSOARG00020009694	ENSOARG00020009657	ENSOARG00020009595	ENSOARG00020009537 #27	ENSOARG00020009477 #27	BPIFB4 (ENSOARG00020009376) #28	BPIFB3 (ENSOARG00020009266) #29	BPIFB6 (ENSOARG00020009171) #30	SUN5 (ENSOARG00020008881) #32	EFCAB8 (ENSOARG00020008596)
Bovinae	ANCESTRAL SPECIES	23	ENSGT00940000157014.a	ENSGT00390000014165.c.a.b.b.b	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562.a	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00950000183176.a.t	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a.s.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b.a.b #27	ENSGT00390000016972.a.b.a.b.b.b	ENSGT01100000263546.d.b.a.b.b #27	ENSGT01100000263546.d.b.a.b.a.a #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30
Bos	ANCESTRAL SPECIES	24	ENSGT00940000157014.a	ENSGT00390000014165.c.a.b.b.b	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562.a	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00950000183176.a.t	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a.s.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b.a.b #27	ENSGT00390000016972.a.b.a.b.b.b	ENSGT01100000263546.d.b.a.b.b #27	ENSGT01100000263546.d.b.a.b.a.a #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30
Bos_a	ANCESTRAL SPECIES	7	ENSGT00390000011067.A	ENSGT00940000157014.a	ENSGT00390000014165.c.a.b.b.b	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562.a	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a.s.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT00940000170884	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b.a.b #27	ENSGT00390000016972.a.b.a.b.b.b	ENSGT01100000263546.d.b.a.b.b #27	ENSGT01100000263546.d.b.a.b.a.a #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30
Domestic yak	MODERN SPECIES	3	ASIP (ENSBGRG00000006937)	ENSBGRG00000006899	ENSBGRG00000006852	RALY (ENSBGRG00000006728)	ENSBGRG00000006672	ZNF341 (ENSBGRG00000006484)	ENSBGRG00000006426	E2F1 (ENSBGRG00000006368)	ACTL10 (ENSBGRG00000006349)	C20orf144 (ENSBGRG00000006314)	NECAB3 (ENSBGRG00000006194)	ENSBGRG00000006176	ENSBGRG00000006170	ENSBGRG00000006162	CBFA2T2 (ENSBGRG00000006122)	SNTA1 (ENSBGRG00000006075) #22	ENSBGRG00000006020	CDK5RAP1 (ENSBGRG00000005894) #23	ENSBGRG00000005792	BPIFB1 (ENSBGRG00000005686) #24	BPIFA1 (ENSBGRG00000005622) #25	BPIFA3 (ENSBGRG00000005582) #26	ENSBGRG00000005555 #27	ENSBGRG00000005545	ENSBGRG00000005491 #27	ENSBGRG00000005469 #27	ENSBGRG00000005450	BPIFB4 (ENSBGRG00000005415) #28	BPIFB3 (ENSBGRG00000005308) #29	BPIFB6 (ENSBGRG00000005172) #30	BPIFB2 (ENSBGRG00000005124) #31
Wild yak	MODERN SPECIES	860									ENSBMUG00000024806	ZNF341 (ENSBMUG00000024798)	ENSBMUG00000024790	E2F1 (ENSBMUG00000024777)	ACTL10 (ENSBMUG00000024774)	NECAB3 (ENSBMUG00000024769)	ENSBMUG00000024759	SNTA1 (ENSBMUG00000024747) #22	CDK5RAP1 (ENSBMUG00000024744) #23	ENSBMUG00000024718	ENSBMUG00000024715	BPIFB1 (ENSBMUG00000024706) #24	BPIFA1 (ENSBMUG00000024703) #25	BPIFA3 (ENSBMUG00000024694) #26	ENSBMUG00000024685	ENSBMUG00000024667 #27	ENSBMUG00000024661	TENT4A (ENSBMUG00000024650)	SRD5A1 (ENSBMUG00000024628)	NSUN2 (ENSBMUG00000024440)	UBE2QL1 (ENSBMUG00000024147)	ENSBMUG00000024143	ENSBMUG00000024138
Bos_b	ANCESTRAL SPECIES	26	ENSGT00940000157014.a	ENSGT00390000014165.c.a.b.b.b	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663.r.a	ENSGT00390000000546	ENSGT00390000001562.a.a	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00950000183176.a.s.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b.a.b #27	ENSGT00390000016972.a.b.a.b.b.b	ENSGT01100000263546.d.b.a.b.b #27	ENSGT01100000263546.d.b.a.b.a.a.b #27	ENSGT01100000263546.d.b.a.b.a.a.a #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30
Cow	MODERN SPECIES	4	ITCH (ENSBTAG00000000308)	ENSBTAG00000046623	AHCY (ENSBTAG00000018101)	ASIP (ENSBTAG00000034077)	EIF2S2 (ENSBTAG00000005969)	RALY (ENSBTAG00000016524)	CHMP4B (ENSBTAG00000013387)	ZNF341 (ENSBTAG00000039313)	PXMP4 (ENSBTAG00000038738)	E2F1 (ENSBTAG00000003971)	C13H20orf144 (ENSBTAG00000003962)	NECAB3 (ENSBTAG00000003946)	ENSBTAG00000053797	ENSBTAG00000053051	ENSBTAG00000010131	SNTA1 (ENSBTAG00000000512) #22	ENSBTAG00000031354	CDK5RAP1 (ENSBTAG00000018535) #23	BPIFB5 (ENSBTAG00000031361) ##24	BPIFB1 (ENSBTAG00000015724) #24	BPIFA1 (ENSBTAG00000017098) #25	BPIFA3 (ENSBTAG00000006802) #26	ENSBTAG00000031373	BPIFA2B (ENSBTAG00000019752) #27	ENSBTAG00000011704	BPIFA2C (ENSBTAG00000031376) #27	ENSBTAG00000031375 #27	BPIFA2A (ENSBTAG00000009144) #27	BPIFB4 (ENSBTAG00000038412) #28	BPIFB3 (ENSBTAG00000038687) #29	BPIFB6 (ENSBTAG00000010112) #30
Hybrid Bos Indicus	MODERN SPECIES	4	ENSBIXG00005028582	AHCY (ENSBIXG00005028542)	ASIP (ENSBIXG00005004914)	EIF2S2 (ENSBIXG00005006636)	RALY (ENSBIXG00005028479)	ENSBIXG00005004879	ZNF341 (ENSBIXG00005028356)	ENSBIXG00005028326	E2F1 (ENSBIXG00005028294)	NECAB3 (ENSBIXG00005028280)	ACTL10 (ENSBIXG00005028235)	ENSBIXG00005028229	ENSBIXG00005004852	ENSBIXG00005028172	ENSBIXG00005004838	SNTA1 (ENSBIXG00005028108) #22	CDK5RAP1 (ENSBIXG00005028076) #23	ENSBIXG00005027971	ENSBIXG00005027937 ##24	BPIFB1 (ENSBIXG00005027890) #24	ENSBIXG00005027873	BPIFA1 (ENSBIXG00005027857) #25	BPIFA3 (ENSBIXG00005027808) #26	ENSBIXG00005005327 #27	ENSBIXG00005027704	ENSBIXG00005027683 #27	ENSBIXG00005027671 #27	BPIFB4 (ENSBIXG00005027645) #28	BPIFB3 (ENSBIXG00005027593) #29	BPIFB6 (ENSBIXG00005027534) #30	BPIFB2 (ENSBIXG00005027458) #31
American bison	MODERN SPECIES	3266	ENSBBBG00000008776	ENSBBBG00000007314	AHCY (ENSBBBG00000018017)	ASIP (ENSBBBG00000018031)	EIF2S2 (ENSBBBG00000004436)	RALY (ENSBBBG00000004441)	CHMP4B (ENSBBBG00000004443)	ZNF341 (ENSBBBG00000018116)	ENSBBBG00000004455	E2F1 (ENSBBBG00000008832)	ACTL10 (ENSBBBG00000018177)	ENSBBBG00000004464	NECAB3 (ENSBBBG00000018216)	ENSBBBG00000018224	ENSBBBG00000018285	SNTA1 (ENSBBBG00000018296) #22	CDK5RAP1 (ENSBBBG00000018377) #23	ENSBBBG00000009135	BPIFB1 (ENSBBBG00000018409) #24	BPIFA1 (ENSBBBG00000018424) #25	BPIFA3 (ENSBBBG00000004515) #26	ENSBBBG00000018447	ENSBBBG00000018462 #27	ENSBBBG00000004535	ENSBBBG00000004542	ENSBBBG00000018490 #27	ENSBBBG00000018502 #27	ENSBBBG00000018505
Siberian musk deer	MODERN SPECIES	1198	DYNLRB1 (ENSMMSG00000011749)	ITCH (ENSMMSG00000011807)	AHCY (ENSMMSG00000011983)	ASIP (ENSMMSG00000012026)	EIF2S2 (ENSMMSG00000012063)	RALY (ENSMMSG00000012103)	CHMP4B (ENSMMSG00000012164)	ZNF341 (ENSMMSG00000012195)	PXMP4 (ENSMMSG00000012229)	E2F1 (ENSMMSG00000012256)	NECAB3 (ENSMMSG00000012299)	ACTL10 (ENSMMSG00000012331)	ENSMMSG00000012346	ENSMMSG00000012366	CBFA2T2 (ENSMMSG00000012397)	SNTA1 (ENSMMSG00000012500) #22	CDK5RAP1 (ENSMMSG00000012553) #23	ENSMMSG00000012657	ENSMMSG00000012706 ##24	BPIFB1 (ENSMMSG00000012771) #24	BPIFA1 (ENSMMSG00000012839) #25	BPIFA3 (ENSMMSG00000012875) #26	ENSMMSG00000012907 #27	ENSMMSG00000012944
Camelidae	ANCESTRAL SPECIES	10	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601.h	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000167979	ENSGT00940000167211	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Arabian camel	MODERN SPECIES	10	ENSCDRG00005012808	DYNLRB1 (ENSCDRG00005012749)	ITCH (ENSCDRG00005012516)	AHCY (ENSCDRG00005012422)	ASIP (ENSCDRG00005012368)	EIF2S2 (ENSCDRG00005012288)	ENSCDRG00005012122	ENSCDRG00005012091	CHMP4B (ENSCDRG00005012040)	ZNF341 (ENSCDRG00005011605)	PXMP4 (ENSCDRG00005011563)	ACTL10 (ENSCDRG00005011389)	C20orf144 (ENSCDRG00005011343)	NECAB3 (ENSCDRG00005011220)	CBFA2T2 (ENSCDRG00005011021)	SNTA1 (ENSCDRG00005010910) #22	CDK5RAP1 (ENSCDRG00005010755) #23	ENSCDRG00005010639 ##24	ENSCDRG00005010439 #24	BPIFA1 (ENSCDRG00005010253) #25	BPIFA3 (ENSCDRG00005010065) #26	ENSCDRG00005009985 #27	BPIFB4 (ENSCDRG00005009777) #28	BPIFB3 (ENSCDRG00005009566) #29	BPIFB6 (ENSCDRG00005009313) #30	BPIFB2 (ENSCDRG00005009158) #31	SUN5 (ENSCDRG00005008823) #32	EFCAB8 (ENSCDRG00005019793)	MAPRE1 (ENSCDRG00005019775)	DNMT3B (ENSCDRG00005017779)	COMMD7 (ENSCDRG00005017575)
Laurasiatheria_b	ANCESTRAL SPECIES	19	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a.pb
Carnivora	ANCESTRAL SPECIES	20	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263545.a.b.d.a	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Caniformia	ANCESTRAL SPECIES		ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263545.a.b.d.a	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263545.a.b.d.a	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a.ob.b
Mustelinae	ANCESTRAL SPECIES	11	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00390000007560.q.a.d	ENSGT00930000151259	ENSGT00490000043329.a.a.a.pb
Ferret	MODERN SPECIES	180	PIGU (ENSMPUG00000017813)	MAP1LC3A (ENSMPUG00000017814)	DYNLRB1 (ENSMPUG00000017815)	ITCH (ENSMPUG00000017816)	AHCY (ENSMPUG00000017817)	ASIP (ENSMPUG00000017818)	EIF2S2 (ENSMPUG00000017819)	RALY (ENSMPUG00000017820)	CHMP4B (ENSMPUG00000017821)	ZNF341 (ENSMPUG00000017822)	PXMP4 (ENSMPUG00000017823)	E2F1 (ENSMPUG00000017824)	NECAB3 (ENSMPUG00000017825)	ENSMPUG00000017829	CBFA2T2 (ENSMPUG00000017831)	SNTA1 (ENSMPUG00000017832) #22	ENSMPUG00000017835 #23	ENSMPUG00000017836 #23	ENSMPUG00000017837 #23	ENSMPUG00000017838	ENSMPUG00000017839	BPIFB1 (ENSMPUG00000017841) #24	BPIFA1 (ENSMPUG00000017848) #25	BPIFA3 (ENSMPUG00000017855) #26	ENSMPUG00000017856 #27	ENSMPUG00000017857	BPIFB4 (ENSMPUG00000017858) #28	ENSMPUG00000017860	BPIFB3 (ENSMPUG00000017861) #29	ENSMPUG00000017862	BPIFB2 (ENSMPUG00000017863) #31
American mink	MODERN SPECIES	17	MAP1LC3A (ENSNVIG00000017515)	ENSNVIG00000017524	ITCH (ENSNVIG00000017551)	AHCY (ENSNVIG00000017607)	ASIP (ENSNVIG00000017624)	EIF2S2 (ENSNVIG00000017647)	RALY (ENSNVIG00000017666)	CHMP4B (ENSNVIG00000017728)	ZNF341 (ENSNVIG00000017752)	PXMP4 (ENSNVIG00000017800)	E2F1 (ENSNVIG00000017832)	NECAB3 (ENSNVIG00000017859)	ACTL10 (ENSNVIG00000017892)	ENSNVIG00000017895	CBFA2T2 (ENSNVIG00000017905)	SNTA1 (ENSNVIG00000017966) #22	CDK5RAP1 (ENSNVIG00000017990) #23	ENSNVIG00000018027 ##24	BPIFB1 (ENSNVIG00000018051) #24	BPIFA1 (ENSNVIG00000018087) #25	BPIFA3 (ENSNVIG00000018144) #26	ENSNVIG00000018194	BPIFB4 (ENSNVIG00000018205) #28	BPIFB3 (ENSNVIG00000018227) #29	BPIFB6 (ENSNVIG00000018242) #30	BPIFB2 (ENSNVIG00000018261) #31	SUN5 (ENSNVIG00000018291) #32	ENSNVIG00000018321	ENSNVIG00000018325	MAPRE1 (ENSNVIG00000018328)	DNMT3B (ENSNVIG00000018344)
Ursidae	ANCESTRAL SPECIES	14	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804.b	ENSGT00940000157601	ENSGT00940000154663.j	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000170884	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263545.a.b.d.a	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a.ob.b
Giant Panda	MODERN SPECIES	4	PIGU (ENSAMEG00000009187)	MAP1LC3A (ENSAMEG00000009183)	ENSAMEG00000009179	ITCH (ENSAMEG00000009134)	AHCY (ENSAMEG00000009105)	ASIP (ENSAMEG00000009091)	EIF2S2 (ENSAMEG00000009071)	RALY (ENSAMEG00000009050)	CHMP4B (ENSAMEG00000009038)	ZNF341 (ENSAMEG00000009012)	ENSAMEG00000009004	ENSAMEG00000008958	ACTL10 (ENSAMEG00000008990)	ENSAMEG00000019179	CBFA2T2 (ENSAMEG00000008925)	SNTA1 (ENSAMEG00000012992) #22	CDK5RAP1 (ENSAMEG00000013021) #23	ENSAMEG00000013060	BPIFB1 (ENSAMEG00000013065) #24	BPIFA1 (ENSAMEG00000013090) #25	BPIFA3 (ENSAMEG00000013101) #26	ENSAMEG00000013108	ENSAMEG00000013119 #27	BPIFB4 (ENSAMEG00000013134) #28	BPIFB3 (ENSAMEG00000013151) #29	BPIFB6 (ENSAMEG00000013170) #30	BPIFB2 (ENSAMEG00000013181) #31	SUN5 (ENSAMEG00000013221) #32	ENSAMEG00000024835	MAPRE1 (ENSAMEG00000013238)	DNMT3B (ENSAMEG00000013257)
Canidae	ANCESTRAL SPECIES	19	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263545.a.b.d.a	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.d.a ##24	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Canis_lupus	ANCESTRAL SPECIES	13	ENSGT00940000157014	ENSGT00390000017515.o.a	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00940000154661.a.a	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263545.a.b.d.a	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.d.a ##24	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617
Dingo	MODERN SPECIES	343	ITCH (ENSCAFG00020005109)	ENSCAFG00020005093	ASIP (ENSCAFG00020005092)	EIF2S2 (ENSCAFG00020005078)	RALY (ENSCAFG00020005069)	ENSCAFG00020005046	CHMP4B (ENSCAFG00020005042)	ZNF341 (ENSCAFG00020004998)	ENSCAFG00020004983	PXMP4 (ENSCAFG00020004976)	E2F1 (ENSCAFG00020004968)	ACTL10 (ENSCAFG00020004965)	ENSCAFG00020004963	NECAB3 (ENSCAFG00020004926)	CBFA2T2 (ENSCAFG00020004923)	SNTA1 (ENSCAFG00020004908) #22	CDK5RAP1 (ENSCAFG00020004901) #23	ENSCAFG00020004889 ##24	BPIFB1 (ENSCAFG00020004882) #24	BPIFA1 (ENSCAFG00020004859) #25	BPIFA3 (ENSCAFG00020004853) #26	ENSCAFG00020004846	ENSCAFG00020004841 #27	BPIFB4 (ENSCAFG00020004810) #28	BPIFB3 (ENSCAFG00020004800) #29	BPIFB6 (ENSCAFG00020004797) #30	BPIFB2 (ENSCAFG00020004786) #31	SUN5 (ENSCAFG00020004779) #32	EFCAB8 (ENSCAFG00020004774)	ENSCAFG00020004771	DNMT3B (ENSCAFG00020004474)
Dog	MODERN SPECIES	16	DYNLRB1 (ENSCAFG00845016154)	ITCH (ENSCAFG00845015881)	ENSCAFG00845015788	ENSCAFG00845015756	ASIP (ENSCAFG00845015715)	EIF2S2 (ENSCAFG00845025914)	RALY (ENSCAFG00845025648)	CHMP4B (ENSCAFG00845025558)	ZNF341 (ENSCAFG00845025407)	TIMM8A (ENSCAFG00845025368)	E2F1 (ENSCAFG00845025182)	ENSCAFG00845025127	ENSCAFG00845025080	NECAB3 (ENSCAFG00845024784)	CBFA2T2 (ENSCAFG00845024493)	CDK5RAP1 (ENSCAFG00845024407) #22	CDK5RAP1 (ENSCAFG00845024161) #23	ENSCAFG00845024074	ENSCAFG00845024007 ##24	BPIFB1 (ENSCAFG00845023875) #24	BPIFA1 (ENSCAFG00845023690) #25	BPIFA3 (ENSCAFG00845023594) #26	ENSCAFG00845023553	BPIFA2 (ENSCAFG00845023488) #27	ENSCAFG00845023399 ##24	BPIFB4 (ENSCAFG00845023291) #28	BPIFB3 (ENSCAFG00845023196) #29	BPIFB6 (ENSCAFG00845023097) #30	BPIFB2 (ENSCAFG00845022982) #31	SUN5 (ENSCAFG00845022906) #32	ENSCAFG00845022856
Red fox	MODERN SPECIES	79	ITCH (ENSVVUG00000004411)	ENSVVUG00000004434	ENSVVUG00000004473	AHCY (ENSVVUG00000004477)	ENSVVUG00000004504	ENSVVUG00000004519	RALY (ENSVVUG00000004546)	ENSVVUG00000004559	CHMP4B (ENSVVUG00000004581)	ZNF341 (ENSVVUG00000004600)	PXMP4 (ENSVVUG00000004749)	E2F1 (ENSVVUG00000004757)	NECAB3 (ENSVVUG00000004770)	ACTL10 (ENSVVUG00000004819)	CBFA2T2 (ENSVVUG00000004825)	SNTA1 (ENSVVUG00000004863) #22	CDK5RAP1 (ENSVVUG00000004885) #23	ENSVVUG00000004922	BPIFB1 (ENSVVUG00000004954) #24	BPIFA1 (ENSVVUG00000004968) #25	BPIFA3 (ENSVVUG00000004970) #26	ENSVVUG00000004973	ENSVVUG00000004976 #27	BPIFB4 (ENSVVUG00000004980) #28	BPIFB3 (ENSVVUG00000004985) #29	BPIFB6 (ENSVVUG00000005002) #30	BPIFB2 (ENSVVUG00000005019) #31	SUN5 (ENSVVUG00000005048) #32	EFCAB8 (ENSVVUG00000005061)	DNMT3B (ENSVVUG00000005117)	COMMD7 (ENSVVUG00000005192)
Felidae	ANCESTRAL SPECIES	3	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014.d	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263545.a.b.d.a	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a.ob.b	ENSGT00940000156928
Panthera	ANCESTRAL SPECIES	2	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014.d	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263545.a.b.d.a	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a.pb	ENSGT00940000156928
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014.d	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263545.a.b.d.a	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a.pb	ENSGT00940000156928
lion	MODERN SPECIES	3	MAP1LC3A (ENSPLOG00000017340)	DYNLRB1 (ENSPLOG00000017257)	ITCH (ENSPLOG00000017081)	ENSPLOG00000016963	ASIP (ENSPLOG00000016919)	EIF2S2 (ENSPLOG00000016881)	RALY (ENSPLOG00000016811)	CHMP4B (ENSPLOG00000016734)	ZNF341 (ENSPLOG00000016700)	PXMP4 (ENSPLOG00000016650)	E2F1 (ENSPLOG00000016585)	ACTL10 (ENSPLOG00000016575)	ENSPLOG00000016536	NECAB3 (ENSPLOG00000016443)	CBFA2T2 (ENSPLOG00000016366)	SNTA1 (ENSPLOG00000016287) #22	CDK5RAP1 (ENSPLOG00000016219) #23	ENSPLOG00000016115 ##24	BPIFB1 (ENSPLOG00000016033) #24	BPIFA1 (ENSPLOG00000015860) #25	BPIFA3 (ENSPLOG00000015799) #26	ENSPLOG00000015750	BPIFA2 (ENSPLOG00000015684) #27	BPIFB4 (ENSPLOG00000015542) #28	BPIFB3 (ENSPLOG00000015334) #29	BPIFB6 (ENSPLOG00000015103) #30	BPIFB2 (ENSPLOG00000014965) #31	SUN5 (ENSPLOG00000014700) #32	EFCAB8 (ENSPLOG00000014634)	MAPRE1 (ENSPLOG00000014581)	DNMT3B (ENSPLOG00000014171)
leopard	MODERN SPECIES	32	PIGU (ENSPPRG00000022523)	MAP1LC3A (ENSPPRG00000020454)	DYNLRB1 (ENSPPRG00000018205)	ITCH (ENSPPRG00000017149)	AHCY (ENSPPRG00000015988)	ASIP (ENSPPRG00000015476)	EIF2S2 (ENSPPRG00000015102)	RALY (ENSPPRG00000014593)	CHMP4B (ENSPPRG00000013846)	ZNF341 (ENSPPRG00000013033)	PXMP4 (ENSPPRG00000011904)	E2F1 (ENSPPRG00000011405)	NECAB3 (ENSPPRG00000011300)	ACTL10 (ENSPPRG00000015321)	CBFA2T2 (ENSPPRG00000009192)	SNTA1 (ENSPPRG00000007797) #22	CDK5RAP1 (ENSPPRG00000007463) #23	ENSPPRG00000006537 ##24	BPIFB1 (ENSPPRG00000005709) #24	BPIFA1 (ENSPPRG00000004405) #25	BPIFA3 (ENSPPRG00000003416) #26	ENSPPRG00000003204	BPIFB4 (ENSPPRG00000003010) #28	BPIFB3 (ENSPPRG00000002108) #29	BPIFB6 (ENSPPRG00000000780) #30	BPIFB2 (ENSPPRG00000000479) #31	SUN5 (ENSPPRG00000000075) #32	EFCAB8 (ENSPPRG00000020444)	MAPRE1 (ENSPPRG00000019866)	DNMT3B (ENSPPRG00000014375)	COMMD7 (ENSPPRG00000011687)
Tiger	MODERN SPECIES	25	PIGU (ENSPTIG00000009571)	MAP1LC3A (ENSPTIG00000008448)	DYNLRB1 (ENSPTIG00000007501)	ITCH (ENSPTIG00000005169)	AHCY (ENSPTIG00000022112)	ASIP (ENSPTIG00000022078)	EIF2S2 (ENSPTIG00000022041)	RALY (ENSPTIG00000021910)	CHMP4B (ENSPTIG00000021794)	ZNF341 (ENSPTIG00000019844)	PXMP4 (ENSPTIG00000018768)	E2F1 (ENSPTIG00000016955)	ACTL10 (ENSPTIG00000001807)	NECAB3 (ENSPTIG00000009683)	CBFA2T2 (ENSPTIG00000020570)	SNTA1 (ENSPTIG00000018658) #22	CDK5RAP1 (ENSPTIG00000016645) #23	ENSPTIG00000013877 ##24	BPIFB1 (ENSPTIG00000012791) #24	BPIFA1 (ENSPTIG00000008137) #25	BPIFA3 (ENSPTIG00000006775) #26	ENSPTIG00000006019	BPIFA2 (ENSPTIG00000002366) #27	BPIFB4 (ENSPTIG00000021563) #28	BPIFB3 (ENSPTIG00000019519) #29	BPIFB6 (ENSPTIG00000017591) #30	BPIFB2 (ENSPTIG00000017316) #31	SUN5 (ENSPTIG00000013586) #32	EFCAB8 (ENSPTIG00000010965)	MAPRE1 (ENSPTIG00000009541)	DNMT3B (ENSPTIG00000015474)
Cat	MODERN SPECIES	2	PIGU (ENSFCAG00000002305)	MAP1LC3A (ENSFCAG00000022040)	DYNLRB1 (ENSFCAG00000002304)	ITCH (ENSFCAG00000008780)	AHCY (ENSFCAG00000007301)	ASIP (ENSFCAG00000011037)	RALY (ENSFCAG00000025252)	EIF2S2 (ENSFCAG00000026834)	CHMP4B (ENSFCAG00000025893)	ZNF341 (ENSFCAG00000018478)	E2F1 (ENSFCAG00000005016)	NECAB3 (ENSFCAG00000005010)	ACTL10 (ENSFCAG00000005015)	CA3H20orf144 (ENSFCAG00000021903)	CBFA2T2 (ENSFCAG00000030382)	SNTA1 (ENSFCAG00000026500) #22	CDK5RAP1 (ENSFCAG00000015197) #23	ENSFCAG00000049613	ENSFCAG00000030030	BPIFA1 (ENSFCAG00000015193) #25	BPIFA3 (ENSFCAG00000022440) #26	ENSFCAG00000015188	BPIFA2 (ENSFCAG00000043660) #27	BPIFB4 (ENSFCAG00000015185) #28	BPIFB3 (ENSFCAG00000015183) #29	BPIFB6 (ENSFCAG00000015181) #30	BPIFB2 (ENSFCAG00000015179) #31	SUN5 (ENSFCAG00000025943) #32	EFCAB8 (ENSFCAG00000037633)	MAPRE1 (ENSFCAG00000007783)	DNMT3B (ENSFCAG00000007779)
Laurasiatheria_c	ANCESTRAL SPECIES	17	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01010000222653	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a.pb
Chiroptera	ANCESTRAL SPECIES	7	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00930000151259	ENSGT00490000043329.a.a.a.pb	ENSGT00940000156928	ENSGT00390000012419	ENSGT00940000157729
Megabat	MODERN SPECIES	372									CHMP4B (ENSPVAG00000010293)	ZNF341 (ENSPVAG00000010292)	PXMP4 (ENSPVAG00000010291)	E2F1 (ENSPVAG00000010290)	C20orf144 (ENSPVAG00000010288)	NECAB3 (ENSPVAG00000010287)	CBFA2T2 (ENSPVAG00000010286)	SNTA1 (ENSPVAG00000010285) #22	CDK5RAP1 (ENSPVAG00000010283) #23	ENSPVAG00000010282
Microchiroptera	ANCESTRAL SPECIES	6	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00490000043329.a.a.a.pb	ENSGT00940000156928	ENSGT00390000012419	ENSGT00940000157729	ENSGT00520000055578.a.a.c
Microbat	MODERN SPECIES	997	DYNLRB1 (ENSMLUG00000004820)	ITCH (ENSMLUG00000004798)	AHCY (ENSMLUG00000001070)	ASIP (ENSMLUG00000001062)	EIF2S2 (ENSMLUG00000005335)	ENSMLUG00000005330	CHMP4B (ENSMLUG00000015397)	ENSMLUG00000027593	ZNF341 (ENSMLUG00000015386)	PXMP4 (ENSMLUG00000015379)	E2F1 (ENSMLUG00000015371)	ACTL10 (ENSMLUG00000023024)	NECAB3 (ENSMLUG00000015354)	CBFA2T2 (ENSMLUG00000015344)	ENSMLUG00000023956	SNTA1 (ENSMLUG00000005643) #22	CDK5RAP1 (ENSMLUG00000005632) #23	ENSMLUG00000003825	ENSMLUG00000029998 ##24	ENSMLUG00000003811	BPIFA1 (ENSMLUG00000000670) #25	BPIFA3 (ENSMLUG00000000658) #26	ENSMLUG00000016865 #27	BPIFB4 (ENSMLUG00000016442) #28	BPIFB3 (ENSMLUG00000016437) #29	ENSMLUG00000016424 #30	BPIFB2 (ENSMLUG00000016415) #31	SUN5 (ENSMLUG00000016408) #32	MAPRE1 (ENSMLUG00000016403)	DNMT3B (ENSMLUG00000016384)	COMMD7 (ENSMLUG00000013887)
Greater horseshoe bat	MODERN SPECIES	15	MAP1LC3A (ENSRFEG00010007180)	ITCH (ENSRFEG00010007315)	AHCY (ENSRFEG00010007632)	ASIP (ENSRFEG00010007692)	EIF2S2 (ENSRFEG00010007720)	RALY (ENSRFEG00010007771)	CHMP4B (ENSRFEG00010007840)	ENSRFEG00010007891	ZNF341 (ENSRFEG00010007927)	PXMP4 (ENSRFEG00010008002)	E2F1 (ENSRFEG00010008064)	NECAB3 (ENSRFEG00010008150)	ACTL10 (ENSRFEG00010008302)	C20orf144 (ENSRFEG00010008315)	CBFA2T2 (ENSRFEG00010008347)	SNTA1 (ENSRFEG00010008565) #22	CDK5RAP1 (ENSRFEG00010008644) #23	BPIFB1 (ENSRFEG00010008738) #24	ENSRFEG00010008900 #25	BPIFA3 (ENSRFEG00010009054) #26	BPIFA2 (ENSRFEG00010009183) #27	BPIFB4 (ENSRFEG00010009259) #28	BPIFB3 (ENSRFEG00010009403) #29	BPIFB6 (ENSRFEG00010009586) #30	BPIFB2 (ENSRFEG00010009739) #31	SUN5 (ENSRFEG00010009894) #32	MAPRE1 (ENSRFEG00010010133)	DNMT3B (ENSRFEG00010010315)	COMMD7 (ENSRFEG00010010850)	NOL4L (ENSRFEG00010011006)	ASXL1 (ENSRFEG00010011119)
Equus	ANCESTRAL SPECIES	8	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT01050000245239.e.b	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b.a #24	ENSGT01100000263546.d.b.a.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT01100000263546.d.b.a.a.a.a.b.a #25	ENSGT01100000263546.d.a ##24	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00490000043329.a.a.a.pb	ENSGT00940000156928
Donkey	MODERN SPECIES	6	ITCH (ENSEASG00005007446)	ENSEASG00005037670	ENSEASG00005028379	ENSEASG00005033842	ASIP (ENSEASG00005024850)	EIF2S2 (ENSEASG00005008498)	RALY (ENSEASG00005008501)	ENSEASG00005034253	ZNF341 (ENSEASG00005008514)	PXMP4 (ENSEASG00005035010)	E2F1 (ENSEASG00005008538)	ENSEASG00005032176	ENSEASG00005008547	NECAB3 (ENSEASG00005008543)	CBFA2T2 (ENSEASG00005008552)	SNTA1 (ENSEASG00005008555) #22	CDK5RAP1 (ENSEASG00005008558) #23	ENSEASG00005036966 ##24	BPIFB1 (ENSEASG00005026747) #24	BPIFA3 (ENSEASG00005008570) #26	ENSEASG00005028659	ENSEASG00005004350 #25	ENSEASG00005034954 ##24	BPIFA2 (ENSEASG00005007789) #27	ENSEASG00005037736	BPIFB4 (ENSEASG00005004467) #28	BPIFB3 (ENSEASG00005004457) #29	BPIFB6 (ENSEASG00005004435) #30	BPIFB2 (ENSEASG00005004416) #31	SUN5 (ENSEASG00005004397) #32	EFCAB8 (ENSEASG00005004382)
Horse	MODERN SPECIES	14	ITCH (ENSECAG00000016216)	ENSECAG00000060369	ENSECAG00000020551	ENSECAG00000055038	ASIP (ENSECAG00000004241)	ENSECAG00000040547	EIF2S2 (ENSECAG00000050295)	RALY (ENSECAG00000012357)	CHMP4B (ENSECAG00000008311)	ZNF341 (ENSECAG00000000301)	PXMP4 (ENSECAG00000024954)	ACTL10 (ENSECAG00000001232)	ENSECAG00000049637	NECAB3 (ENSECAG00000012086)	CBFA2T2 (ENSECAG00000025052)	SNTA1 (ENSECAG00000057698) #22	SNTA1 (ENSECAG00000020715) #23	ENSECAG00000000778 ##24	ENSECAG00000023336 #24	ENSECAG00000041183 #25	ENSECAG00000020661 #26	ENSECAG00000027711 #26	ENSECAG00000014407 #24	ENSECAG00000053425	ENSECAG00000037593 #25	ENSECAG00000022575 #25	ENSECAG00000041946 #25	ENSECAG00000044582 ##24	BPIFA2 (ENSECAG00000000297) #27	LATH (ENSECAG00000033314) ##24	ENSECAG00000033869 #27
Atlantogenata	ANCESTRAL SPECIES	6	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00930000151259
Xenarthra	ANCESTRAL SPECIES	316						ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301
Sloth	MODERN SPECIES	389																SNTA1 (ENSCHOG00000002162) #22
Armadillo	MODERN SPECIES	1934				ENSDNOG00000048473	EIF2S2 (ENSDNOG00000047014)	ENSDNOG00000003227	ENSDNOG00000038139	CHMP4B (ENSDNOG00000032154)	ZNF341 (ENSDNOG00000034368)	PXMP4 (ENSDNOG00000007975)	E2F1 (ENSDNOG00000046733)	ACTL10 (ENSDNOG00000032070)	ENSDNOG00000007969	NECAB3 (ENSDNOG00000039751)	CBFA2T2 (ENSDNOG00000007950)	SNTA1 (ENSDNOG00000040663) #22	ENSDNOG00000043650	CDK5RAP1 (ENSDNOG00000015236) #23	ENSDNOG00000039006
Afrotheria	ANCESTRAL SPECIES	3	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00930000151259
Afrotheria_a	ANCESTRAL SPECIES	3	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000160361 #23	ENSGT00940000164301	ENSGT01100000263546.e.a.a.a.a ##24	ENSGT01100000263546.d.b.b #24	ENSGT01100000263546.d.b.a.a.a.a #25	ENSGT01100000263546.d.b.a.a.a.b #26	ENSGT00510000049750	ENSGT01100000263546.d.b.a.b #27	ENSGT01100000263546.e.a.a.a.b #28	ENSGT01100000263546.e.a.b #29	ENSGT01100000263546.e.b #30	ENSGT01100000263546.e.a.a.b #31	ENSGT00940000155225 #32	ENSGT00940000163617	ENSGT00930000151259
Elephant	MODERN SPECIES	180	MAP1LC3A (ENSLAFG00000027645)	DYNLRB1 (ENSLAFG00000029820)	ITCH (ENSLAFG00000011603)	ENSLAFG00000028026	ASIP (ENSLAFG00000005229)	EIF2S2 (ENSLAFG00000016639)	RALY (ENSLAFG00000000321)	CHMP4B (ENSLAFG00000022958)	ZNF341 (ENSLAFG00000007128)	PXMP4 (ENSLAFG00000004616)	E2F1 (ENSLAFG00000018114)	ACTL10 (ENSLAFG00000018108)	ENSLAFG00000018104	NECAB3 (ENSLAFG00000018096)	CBFA2T2 (ENSLAFG00000018088)	SNTA1 (ENSLAFG00000027816) #22	CDK5RAP1 (ENSLAFG00000001172) #23	ENSLAFG00000014548	ENSLAFG00000028139 ##24	BPIFB1 (ENSLAFG00000010267) #24	BPIFA1 (ENSLAFG00000010265) #25	ENSLAFG00000003615 #26	ENSLAFG00000000105 #27	BPIFB4 (ENSLAFG00000002061) #28	BPIFB3 (ENSLAFG00000018176) #29	BPIFB6 (ENSLAFG00000028326) #30	BPIFB2 (ENSLAFG00000008987) #31	SUN5 (ENSLAFG00000021496) #32	ENSLAFG00000032038	ENSLAFG00000020535	MAPRE1 (ENSLAFG00000015453)
Hyrax	MODERN SPECIES	338																SNTA1 (ENSPCAG00000006991) #22
Tenrec	MODERN SPECIES	478																SNTA1 (ENSETEG00000014345) #22
Marsupialia	ANCESTRAL SPECIES	9	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a.g	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000155266.x	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00390000013020	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153137.a.b.a	ENSGT00950000182915.a.a.a	ENSGT00950000183201.b.b.b.a	ENSGT00940000160738	ENSGT00940000156526.a	ENSGT00390000002781	ENSGT00940000158554	ENSGT00940000157465.a	ENSGT00940000159358	ENSGT00420000029848.A	ENSGT00940000158327	ENSGT00940000156413
Opossum	MODERN SPECIES		ITCH (ENSMODG00000002732)	AHCY (ENSMODG00000002753)	ASIP (ENSMODG00000002762)	ENSMODG00000002765	EIF2S2 (ENSMODG00000002805)	RALY (ENSMODG00000002819)	ENSMODG00000002836	CHMP4B (ENSMODG00000002830)	ZNF341 (ENSMODG00000002856)	PXMP4 (ENSMODG00000002864)	E2F1 (ENSMODG00000002875)	ENSMODG00000002988	ENSMODG00000002993	NECAB3 (ENSMODG00000002977)	CBFA2T2 (ENSMODG00000003023)	SNTA1 (ENSMODG00000003050) #22	TOX2 (ENSMODG00000003070)	ENSMODG00000023076	SRSF6 (ENSMODG00000003107)	L3MBTL1 (ENSMODG00000003647)	ENSMODG00000003673	ENSMODG00000003708	MAML1 (ENSMODG00000003725)	LTC4S (ENSMODG00000003733)	MGAT4B (ENSMODG00000003778)	SQSTM1 (ENSMODG00000003806)	TBC1D9B (ENSMODG00000003882)	ENSMODG00000003904	FLT4 (ENSMODG00000003918)	ENSMODG00000003922	MAPK9 (ENSMODG00000003946)
Marsupialia_b	ANCESTRAL SPECIES	5	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a.g	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00940000155266.x	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153137.a.b.a	ENSGT00950000182915.a.a.a	ENSGT00950000183201.b.b.b.a	ENSGT00940000160738	ENSGT00940000156526.a	ENSGT00390000002781	ENSGT00940000158554	ENSGT00940000157465.a	ENSGT00940000159358	ENSGT00420000029848.A	ENSGT00940000158327	ENSGT00940000156413
Diprotodontia	ANCESTRAL SPECIES	4	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a.g	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601.x.a	ENSGT00940000155266.x	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153137.a.b.a	ENSGT00950000182915.a.a.a	ENSGT00950000183201.b.b.b.a	ENSGT00940000160738	ENSGT00940000156526.a	ENSGT00390000002781	ENSGT00940000158554	ENSGT00940000157465.a	ENSGT00940000159358	ENSGT00420000029848.A	ENSGT00940000158327	ENSGT00940000156413
Diprotodontia_a	ANCESTRAL SPECIES	5	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a.g	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601.x.a	ENSGT00940000157601.x.b	ENSGT00940000154663	ENSGT00940000155266.x	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000155448	ENSGT00940000159708	ENSGT00940000153137.a.b.a	ENSGT00950000182915.a.a.a	ENSGT00950000183201.b.b.b.a	ENSGT00940000160738	ENSGT00940000156526.a	ENSGT00390000002781	ENSGT00940000158554	ENSGT00940000157465.a	ENSGT00940000159358	ENSGT00420000029848.A	ENSGT00940000158327	ENSGT00940000156413
Common wonbat	MODERN SPECIES	1023	MAP1LC3A (ENSVURG00010019204)	DYNLRB1 (ENSVURG00010019208)	ITCH (ENSVURG00010019217)	AHCY (ENSVURG00010019234)	ASIP (ENSVURG00010019239)	EIF2S2 (ENSVURG00010019246)	ENSVURG00010019251	CHMP4B (ENSVURG00010019263)	ENSVURG00010019269	ZNF341 (ENSVURG00010019277)	PXMP4 (ENSVURG00010019297)	E2F1 (ENSVURG00010019304)	NECAB3 (ENSVURG00010019324)	ACTL10 (ENSVURG00010019341)	CBFA2T2 (ENSVURG00010019347)	SNTA1 (ENSVURG00010019377) #22	TOX2 (ENSVURG00010019590)	SRSF6 (ENSVURG00010019601)	L3MBTL1 (ENSVURG00010019617)	CANX (ENSVURG00010019632)	MAML1 (ENSVURG00010019659)	SQSTM1 (ENSVURG00010019670)	TBC1D9B (ENSVURG00010019683)	RNF130 (ENSVURG00010019705)	FLT4 (ENSVURG00010019743)	ENSVURG00010019769	MAPK9 (ENSVURG00010019784)	GFPT2 (ENSVURG00010019801)	CNOT6 (ENSVURG00010019814)	RASGEF1C (ENSVURG00010019833)	CLK4 (ENSVURG00010019863)
koala	MODERN SPECIES	74	DYNLRB1 (ENSPCIG00000028154)	ITCH (ENSPCIG00000028155)	ENSPCIG00000028157	ENSPCIG00000028158	ASIP (ENSPCIG00000028159)	EIF2S2 (ENSPCIG00000011155)	ENSPCIG00000011153	CHMP4B (ENSPCIG00000005848)	ENSPCIG00000005849	ZNF341 (ENSPCIG00000005844)	PXMP4 (ENSPCIG00000005843)	E2F1 (ENSPCIG00000005835)	NECAB3 (ENSPCIG00000005831)	ENSPCIG00000005833	ENSPCIG00000005830	SNTA1 (ENSPCIG00000005829) #22	TOX2 (ENSPCIG00000005825)	SRSF6 (ENSPCIG00000003820)	L3MBTL1 (ENSPCIG00000003824)	ENSPCIG00000033556	CANX (ENSPCIG00000003888)	MAML1 (ENSPCIG00000003902)	ENSPCIG00000003908	MGAT4B (ENSPCIG00000003915)	SQSTM1 (ENSPCIG00000003936)	TBC1D9B (ENSPCIG00000003952)	ENSPCIG00000003992	FLT4 (ENSPCIG00000004027)	ENSPCIG00000004056	MAPK9 (ENSPCIG00000004062)	GFPT2 (ENSPCIG00000004080)
Wallaby	MODERN SPECIES	1094																SNTA1 (ENSMEUG00000012963) #22
Tasmanian devil	MODERN SPECIES	1	PIGU (ENSSHAG00000017606)	MAP1LC3A (ENSSHAG00000030605)	ITCH (ENSSHAG00000030062)	AHCY (ENSSHAG00000031421)	ENSSHAG00000031644	EIF2S2 (ENSSHAG00000029026)	ENSSHAG00000022710	ENSSHAG00000026098	ENSSHAG00000022664	ZNF341 (ENSSHAG00000022447)	PXMP4 (ENSSHAG00000029249)	ENSSHAG00000023415	E2F1 (ENSSHAG00000029215)	ENSSHAG00000023391	ENSSHAG00000024966	ENSSHAG00000015173 #22	ENSSHAG00000013874	ENSSHAG00000012805	ENSSHAG00000028809	ENSSHAG00000011510	MAML1 (ENSSHAG00000011151)	LTC4S (ENSSHAG00000025649)	MGAT4B (ENSSHAG00000010968)	SQSTM1 (ENSSHAG00000025384)	ENSSHAG00000009809	ENSSHAG00000008447	ENSSHAG00000007344	ENSSHAG00000006299	MAPK9 (ENSSHAG00000005542)	ENSSHAG00000004019	ENSSHAG00000017436
Platypus	MODERN SPECIES	19	PTPRT (ENSOANG00000015082)	MYBL2 (ENSOANG00000050677)	IFT52 (ENSOANG00000014960)	SGK2 (ENSOANG00000039782)	ATOSA (ENSOANG00000002613)	ARPP19 (ENSOANG00000040266)	MYO5A (ENSOANG00000004162)	MYO5C (ENSOANG00000004161)	GNB5 (ENSOANG00000047160)	ENSOANG00000041390	MAPK6 (ENSOANG00000004189)	LEO1 (ENSOANG00000003376)	TMOD3 (ENSOANG00000038195)	ENSOANG00000040856	CBFA2T2 (ENSOANG00000002585)	SNTA1 (ENSOANG00000002101) #22	ONECUT1 (ENSOANG00000040861)	WDR72 (ENSOANG00000013014)	ENSOANG00000040269	ENSOANG00000043837	ENSOANG00000048818	ENSOANG00000012145	ENSOANG00000015609	ENSOANG00000005431	ENSOANG00000041955	ENSOANG00000014372	ENSOANG00000009664	ENSOANG00000039787	ENSOANG00000036090	ENSOANG00000040104	ENSOANG00000048489
Sauria	ANCESTRAL SPECIES	16	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00940000160950	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000161648	ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT01040000241001	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00950000182872.f.a.a.b
Lepidosauria	ANCESTRAL SPECIES	6	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000161648	ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT01040000241001	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00950000182872.f.a.a.b	ENSGT00940000160331
tuatara	MODERN SPECIES	1490								ENSSPUG00000012622	CHMP4B (ENSSPUG00000012632)	ZNF341 (ENSSPUG00000012648)	PXMP4 (ENSSPUG00000012666)	E2F1 (ENSSPUG00000012675)	NECAB3 (ENSSPUG00000012690)	ACTL10 (ENSSPUG00000012708)	CBFA2T2 (ENSSPUG00000012717)	SNTA1 (ENSSPUG00000012734) #22	TOX2 (ENSSPUG00000012752)
Episquamata	ANCESTRAL SPECIES	1	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000161648	ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00950000182872.f.a.a.b	ENSGT00940000160331	ENSGT00940000156477
Laterata	ANCESTRAL SPECIES	14	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318
Common wall lizard	MODERN SPECIES	14	ENSPMRG00000020811	ASIP (ENSPMRG00000020805)	EIF2S2 (ENSPMRG00000020795)	RALY (ENSPMRG00000020782)	ENSPMRG00000020778	CHMP4B (ENSPMRG00000020773)	ZNF341 (ENSPMRG00000020759)	PXMP4 (ENSPMRG00000020743)	E2F1 (ENSPMRG00000020737)	ENSPMRG00000020730	ENSPMRG00000020727	ACTL10 (ENSPMRG00000020723)	NECAB3 (ENSPMRG00000020712)	ENSPMRG00000020695	CBFA2T2 (ENSPMRG00000020681)	SNTA1 (ENSPMRG00000020670) #22	TOX2 (ENSPMRG00000020639)	ENSPMRG00000020620	ENSPMRG00000020615	EDEM2 (ENSPMRG00000020578)	TRPC4AP (ENSPMRG00000020462)	ENSPMRG00000019018	GSS (ENSPMRG00000018774)	ACSS2 (ENSPMRG00000018560)	SOGA1 (ENSPMRG00000018470)	ENSPMRG00000018424	ENSPMRG00000018414	ENSPMRG00000018204	ENSPMRG00000017707	ENSPMRG00000017613	ENSPMRG00000017604
Argentine black and white tegu	MODERN SPECIES	28	AHCY (ENSSMRG00000001207)	ENSSMRG00000001217	ASIP (ENSSMRG00000001224)	ENSSMRG00000001230	EIF2S2 (ENSSMRG00000001247)	RALY (ENSSMRG00000001280)	ENSSMRG00000001318	ENSSMRG00000001388	CHMP4B (ENSSMRG00000001390)	ZNF341 (ENSSMRG00000001447)	PXMP4 (ENSSMRG00000001453)	E2F1 (ENSSMRG00000001456)	NECAB3 (ENSSMRG00000001460)	ACTL10 (ENSSMRG00000001490)	CBFA2T2 (ENSSMRG00000001500)	SNTA1 (ENSSMRG00000001526) #22	TOX2 (ENSSMRG00000001545)	EDEM2 (ENSSMRG00000001620)	TRPC4AP (ENSSMRG00000001628)	ENSSMRG00000001637	ENSSMRG00000001837	GSS (ENSSMRG00000001989)	ACSS2 (ENSSMRG00000001992)	SOGA1 (ENSSMRG00000002082)	ENSSMRG00000002097	SAMHD1 (ENSSMRG00000002105)	RBL1 (ENSSMRG00000002155)	CHD6 (ENSSMRG00000002188)	RALGAPB (ENSSMRG00000002234)	NDRG3 (ENSSMRG00000002245)	ENSSMRG00000002257
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000161648	ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00950000182872.f.a.a.b	ENSGT00940000160331	ENSGT00940000156477
Lizard	MODERN SPECIES	3	RALY (ENSACAG00000008983)	ENSACAG00000043994	ENSACAG00000037357	ENSACAG00000040646	ENSACAG00000038084	CHMP4B (ENSACAG00000008891)	ZNF341 (ENSACAG00000008818)	PXMP4 (ENSACAG00000008802)	ENSACAG00000042361	ENSACAG00000037827	ENSACAG00000008761	ENSACAG00000002219	NECAB3 (ENSACAG00000008697)	ENSACAG00000035390	CBFA2T2 (ENSACAG00000008567)	SNTA1 (ENSACAG00000008475) #22	ENSACAG00000043850	ENSACAG00000008446	ENSACAG00000042806	ENSACAG00000036722	ENSACAG00000010388	ENSACAG00000008338	TRPC4AP (ENSACAG00000008237)	ENSACAG00000007497	ENSACAG00000007388	ENSACAG00000007148	SOGA1 (ENSACAG00000007120)	TLDC2 (ENSACAG00000007093)	SAMHD1 (ENSACAG00000007007)	RBL1 (ENSACAG00000006847)	ENSACAG00000006842
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES	1	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b.a #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00950000182872.f.a.a.b	ENSGT00940000160331	ENSGT00940000156477	ENSGT00940000164502
Indian cobra	MODERN SPECIES	2	MAP1LC3A (ENSNNAG00000000871)	DYNLRB1 (ENSNNAG00000000888)	ITCH (ENSNNAG00000000909)	AHCY (ENSNNAG00000000953)	ASIP (ENSNNAG00000000968)	EIF2S2 (ENSNNAG00000000981)	ENSNNAG00000000994	ENSNNAG00000001010	CHMP4B (ENSNNAG00000001020)	ZNF341 (ENSNNAG00000001049)	PXMP4 (ENSNNAG00000001074)	E2F1 (ENSNNAG00000001105)	NECAB3 (ENSNNAG00000001130)	ENSNNAG00000001144	CBFA2T2 (ENSNNAG00000001161)	SNTA1 (ENSNNAG00000001177) #22	TOX2 (ENSNNAG00000001195)	ENSNNAG00000001221	EDEM2 (ENSNNAG00000001243)	TRPC4AP (ENSNNAG00000001268)	ENSNNAG00000002064	GSS (ENSNNAG00000006759)	ACSS2 (ENSNNAG00000006792)	SOGA1 (ENSNNAG00000006897)	ENSNNAG00000006913	SAMHD1 (ENSNNAG00000006949)	RBL1 (ENSNNAG00000007096)	ENSNNAG00000009289	ENSNNAG00000009298	CHD6 (ENSNNAG00000009784)	RALGAPB (ENSNNAG00000016407)
Elapidae_a	ANCESTRAL SPECIES	3	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b.a #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00950000182872.f.a.a.b	ENSGT00940000160331	ENSGT00940000156477	ENSGT00940000164502
Acanthophiinae	ANCESTRAL SPECIES	2	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b.a #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00950000182872.f.a.a.b	ENSGT00940000160331	ENSGT00940000156477	ENSGT00940000164502
Mainland tiger snake	MODERN SPECIES	214																SNTA1 (ENSNSUG00000018991) #22	TOX2 (ENSNSUG00000018992)	EDEM2 (ENSNSUG00000018993)	TRPC4AP (ENSNSUG00000018994)	ENSNSUG00000018995	GSS (ENSNSUG00000018997)	ACSS2 (ENSNSUG00000018998)	SOGA1 (ENSNSUG00000018999)	ENSNSUG00000019000
Eastern brown snake	MODERN SPECIES	8	MAP1LC3A (ENSPTXG00000007795)	DYNLRB1 (ENSPTXG00000007798)	ITCH (ENSPTXG00000007800)	AHCY (ENSPTXG00000007803)	ASIP (ENSPTXG00000007806)	EIF2S2 (ENSPTXG00000007809)	ENSPTXG00000007811	ENSPTXG00000007812	CHMP4B (ENSPTXG00000007814)	ZNF341 (ENSPTXG00000007815)	PXMP4 (ENSPTXG00000007816)	E2F1 (ENSPTXG00000007817)	NECAB3 (ENSPTXG00000007818)	ACTL10 (ENSPTXG00000007822)	CBFA2T2 (ENSPTXG00000007823)	SNTA1 (ENSPTXG00000007837) #22	TOX2 (ENSPTXG00000007838)	ENSPTXG00000007839	EDEM2 (ENSPTXG00000007840)	TRPC4AP (ENSPTXG00000007841)	ENSPTXG00000007842	GSS (ENSPTXG00000007844)	ACSS2 (ENSPTXG00000007845)	SOGA1 (ENSPTXG00000007847)	ENSPTXG00000000040	SAMHD1 (ENSPTXG00000000069)	CHD6 (ENSPTXG00000000268)	ENSPTXG00000000404	RALGAPB (ENSPTXG00000000412)	NDRG3 (ENSPTXG00000000472)	ENSPTXG00000000489
Blue-lipped sea krait	MODERN SPECIES	4675																ENSLLTG00000008709 #22
Elapidae	ANCESTRAL SPECIES																	ENSGT00950000182863.A.a.b.b #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00950000182863.A.a.b.b #22
Blue-lipped sea krait	MODERN SPECIES	3153																ENSLLTG00000004838 #22
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160950	ENSGT00940000153251.a	ENSGT00940000156202.b	ENSGT00390000004910	ENSGT00390000005575	ENSGT00960000189441	ENSGT00940000162847	ENSGT00940000153998.a	ENSGT01000000215044	ENSGT00940000156028	ENSGT00390000003446	ENSGT00940000162182
Cryptodira	ANCESTRAL SPECIES	7	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00940000160950	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00950000182872.f.a.a.b	ENSGT00940000160331	ENSGT00940000156477
Chinese turtle	MODERN SPECIES	1953															CBFA2T2 (ENSPSIG00000006165)	ENSPSIG00000008084 #22
Testudinoidea	ANCESTRAL SPECIES	28	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00940000160950	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00950000182872.f.a.a.b	ENSGT00940000160331	ENSGT00940000156477
Testudinidae	ANCESTRAL SPECIES	34	ENSGT00390000014941	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00950000182872.f.a.a.b	ENSGT00940000160331	ENSGT00940000156477	ENSGT00940000164502
Abingdon island giant tortoise	MODERN SPECIES	1738							ENSCABG00000022367	ENSCABG00000022368	CHMP4B (ENSCABG00000022369)	ZNF341 (ENSCABG00000022370)	PXMP4 (ENSCABG00000022371)	E2F1 (ENSCABG00000022372)	NECAB3 (ENSCABG00000022373)	ACTL10 (ENSCABG00000022374)	CBFA2T2 (ENSCABG00000022375)	SNTA1 (ENSCABG00000022385) #22	TOX2 (ENSCABG00000022388)	EDEM2 (ENSCABG00000022391)
Goode s thornscrub tortoise	MODERN SPECIES	5	MAP1LC3A (ENSGEVG00005012664)	DYNLRB1 (ENSGEVG00005012686)	ITCH (ENSGEVG00005012721)	AHCY (ENSGEVG00005012811)	ASIP (ENSGEVG00005012839)	EIF2S2 (ENSGEVG00005012979)	RALY (ENSGEVG00005013016)	CHMP4B (ENSGEVG00005013137)	ZNF341 (ENSGEVG00005013173)	PXMP4 (ENSGEVG00005013238)	E2F1 (ENSGEVG00005013271)	NECAB3 (ENSGEVG00005013465)	ACTL10 (ENSGEVG00005013631)	ENSGEVG00005013648	CBFA2T2 (ENSGEVG00005013689)	SNTA1 (ENSGEVG00005013723) #22	TOX2 (ENSGEVG00005013756)	EDEM2 (ENSGEVG00005013803)	TRPC4AP (ENSGEVG00005013841)	ENSGEVG00005013945	GSS (ENSGEVG00005014633)	ACSS2 (ENSGEVG00005014698)	SOGA1 (ENSGEVG00005014842)	ENSGEVG00005015088	SAMHD1 (ENSGEVG00005015144)	RBL1 (ENSGEVG00005015196)	CHD6 (ENSGEVG00005015334)	RALGAPB (ENSGEVG00005015620)	NDRG3 (ENSGEVG00005015883)	SLA2 (ENSGEVG00005015961)	PHF20 (ENSGEVG00005015992)
Emydidae	ANCESTRAL SPECIES	50	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00960000191106	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160950	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00950000182872.f.a.a.b	ENSGT00940000160331	ENSGT00940000156477	ENSGT00940000164502
painted turtle	MODERN SPECIES	700	MAP1LC3A (ENSCPBG00000018213)	ITCH (ENSCPBG00000018232)	AHCY (ENSCPBG00000018709)	ASIP (ENSCPBG00000019156)	EIF2S2 (ENSCPBG00000019159)	RALY (ENSCPBG00000019164)	ENSCPBG00000019171	CHMP4B (ENSCPBG00000019173)	ZNF341 (ENSCPBG00000019174)	PXMP4 (ENSCPBG00000019176)	E2F1 (ENSCPBG00000019177)	NECAB3 (ENSCPBG00000019179)	ENSCPBG00000019182	ENSCPBG00000019184	CBFA2T2 (ENSCPBG00000019187)	SNTA1 (ENSCPBG00000019190) #22	TOX2 (ENSCPBG00000019193)	EDEM2 (ENSCPBG00000019199)	TRPC4AP (ENSCPBG00000019208)	ENSCPBG00000019257	GSS (ENSCPBG00000019329)	ACSS2 (ENSCPBG00000019337)	SOGA1 (ENSCPBG00000019350)	ENSCPBG00000019354	SAMHD1 (ENSCPBG00000019358)	RBL1 (ENSCPBG00000019364)	CHD6 (ENSCPBG00000019382)	RALGAPB (ENSCPBG00000019414)	NDRG3 (ENSCPBG00000019437)	SLA2 (ENSCPBG00000019447)	PHF20 (ENSCPBG00000019457)
Three-toed box turtle	MODERN SPECIES	108	MAP1LC3A (ENSTMTG00000017835)	DYNLRB1 (ENSTMTG00000017842)	ITCH (ENSTMTG00000017861)	AHCY (ENSTMTG00000017923)	ASIP (ENSTMTG00000017959)	EIF2S2 (ENSTMTG00000018010)	RALY (ENSTMTG00000018027)	ENSTMTG00000018045	CHMP4B (ENSTMTG00000018087)	ZNF341 (ENSTMTG00000018098)	PXMP4 (ENSTMTG00000018136)	E2F1 (ENSTMTG00000018143)	NECAB3 (ENSTMTG00000018162)	ENSTMTG00000018196	CBFA2T2 (ENSTMTG00000018209)	SNTA1 (ENSTMTG00000018232) #22	TOX2 (ENSTMTG00000018257)	EDEM2 (ENSTMTG00000018270)	TRPC4AP (ENSTMTG00000018290)	MYH7B (ENSTMTG00000018334)	GSS (ENSTMTG00000018443)	ACSS2 (ENSTMTG00000018480)	SOGA1 (ENSTMTG00000018547)	ENSTMTG00000018613	SAMHD1 (ENSTMTG00000018637)	RBL1 (ENSTMTG00000018676)	CHD6 (ENSTMTG00000018734)	RALGAPB (ENSTMTG00000018881)	NDRG3 (ENSTMTG00000018931)	SLA2 (ENSTMTG00000018980)	PHF20 (ENSTMTG00000019163)
Archosauria	ANCESTRAL SPECIES	13	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000155326	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b	ENSGT00490000043380	ENSGT00940000162174	ENSGT00950000186009	ENSGT00720000108866
Aves	ANCESTRAL SPECIES	16	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000155326	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b	ENSGT00490000043380	ENSGT00940000162174	ENSGT00950000186009	ENSGT00720000108866
Neognathae	ANCESTRAL SPECIES	16	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000155326	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b	ENSGT00490000043380	ENSGT00940000162174	ENSGT00950000186009	ENSGT00720000108866
Galloanserae	ANCESTRAL SPECIES	15	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663.cb	ENSGT00940000154663.bb	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000155326	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b	ENSGT00490000043380	ENSGT00940000162174	ENSGT00950000186009	ENSGT00720000108866
Phasianidae	ANCESTRAL SPECIES	15	ENSGT00940000158315	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663.bb	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764.b	ENSGT00940000159233.a.a	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000155326	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b	ENSGT00490000043380	ENSGT00940000162174	ENSGT01070000257249	ENSGT00720000108866
Japanese quail	MODERN SPECIES	12	MAP1LC3A (ENSCJPG00005020526)	ENSCJPG00005020528	ENSCJPG00005020529	ITCH (ENSCJPG00005020530)	AHCY (ENSCJPG00005020661)	ASIP (ENSCJPG00005020663)	EIF2S2 (ENSCJPG00005020665)	RALY (ENSCJPG00005020667)	ENSCJPG00005020678	CHMP4B (ENSCJPG00005020680)	ZNF341 (ENSCJPG00005020682)	PXMP4 (ENSCJPG00005020684)	E2F1 (ENSCJPG00005020685)	NECAB3 (ENSCJPG00005020686)	CBFA2T2 (ENSCJPG00005020688)	SNTA1 (ENSCJPG00005020689) #22	TOX2 (ENSCJPG00005020690)	ENSCJPG00005020691	ENSCJPG00005020692	ENSCJPG00005020693	TRPC4AP (ENSCJPG00005020696)	ENSCJPG00005020708	GSS (ENSCJPG00005020716)	ACSS2 (ENSCJPG00005020717)	SOGA1 (ENSCJPG00005020720)	PTPRT (ENSCJPG00005020739)	MYBL2 (ENSCJPG00005020838)	IFT52 (ENSCJPG00005020839)	SGK2 (ENSCJPG00005020840)	SLC32A1 (ENSCJPG00005020841)	ARHGAP40 (ENSCJPG00005020842)
Phasianidae_b	ANCESTRAL SPECIES	15	ENSGT00940000158315	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663.bb	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764.b	ENSGT00940000159233.a.a	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000155326	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b	ENSGT00490000043380	ENSGT00940000162174	ENSGT01070000257249	ENSGT00720000108866
Chicken	MODERN SPECIES	12	DYNLRB1 (ENSGALG00010024672)	ENSGALG00010024685	ENSGALG00010024707	ITCH (ENSGALG00010024723)	AHCY (ENSGALG00010024732)	ASIP (ENSGALG00010024739)	EIF2S2 (ENSGALG00010024754)	RALY (ENSGALG00010024769)	ENSGALG00010024375	CHMP4B (ENSGALG00010024392)	ZNF341 (ENSGALG00010022030)	PXMP4 (ENSGALG00010022044)	E2F1 (ENSGALG00010022055)	NECAB3 (ENSGALG00010025413)	CBFA2T2 (ENSGALG00010022125)	SNTA1 (ENSGALG00010022144) #22	TOX2 (ENSGALG00010022169)	EDEM2 (ENSGALG00010024363)	TRPC4AP (ENSGALG00010022664)	MYH7B (ENSGALG00010022684)	GSS (ENSGALG00010023412)	ACSS2 (ENSGALG00010023439)	SOGA1 (ENSGALG00010023482)	PTPRT (ENSGALG00010023545)	ENSGALG00010025008	MYBL2 (ENSGALG00010023572)	IFT52 (ENSGALG00010023627)	SGK2 (ENSGALG00010023673)	SLC32A1 (ENSGALG00010023684)	ARHGAP40 (ENSGALG00010023712)	ENSGALG00010023721
Turkey	MODERN SPECIES	14	MAP1LC3A (ENSMGAG00000002052)	DYNLRB1 (ENSMGAG00000002057)	ITCH (ENSMGAG00000002065)	AHCY (ENSMGAG00000002143)	ASIP (ENSMGAG00000002166)	EIF2S2 (ENSMGAG00000002174)	RALY (ENSMGAG00000002214)	ENSMGAG00000000775	ENSMGAG00000002583	ENSMGAG00000000789	ENSMGAG00000002621	ENSMGAG00000002490	ENSMGAG00000002533	ENSMGAG00000022366	ENSMGAG00000002485	ENSMGAG00000020439 #22	ENSMGAG00000002364	ENSMGAG00000002276	E2F1 (ENSMGAG00000002385)	ENSMGAG00000020478	ENSMGAG00000002408	ENSMGAG00000002423	ENSMGAG00000002444	ENSMGAG00000002459	ENSMGAG00000017841	ENSMGAG00000004039	ENSMGAG00000004044	R3HDML (ENSMGAG00000004016)	ENSMGAG00000003970	ENSMGAG00000003874	ENSMGAG00000003949
Anatidae	ANCESTRAL SPECIES	22	ENSGT00940000160096	ENSGT01020000230603	ENSGT00940000157086.b	ENSGT00390000005197.b	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663.cb	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000155326	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b	ENSGT00490000043380	ENSGT00940000162174	ENSGT00950000186009	ENSGT00720000108866
Pink-footed goose	MODERN SPECIES	10	KCNS1 (ENSABRG00000018756)	ENSABRG00000018749	MATN4 (ENSABRG00000018746)	RBPJL (ENSABRG00000018726)	AHCY (ENSABRG00000018714)	ASIP (ENSABRG00000018698)	EIF2S2 (ENSABRG00000018685)	RALY (ENSABRG00000018676)	ENSABRG00000018650	ENSABRG00000018638	ZNF341 (ENSABRG00000018632)	PXMP4 (ENSABRG00000018629)	E2F1 (ENSABRG00000018627)	NECAB3 (ENSABRG00000018624)	CBFA2T2 (ENSABRG00000018621)	SNTA1 (ENSABRG00000018613) #22	TOX2 (ENSABRG00000018605)	EDEM2 (ENSABRG00000018594)	TRPC4AP (ENSABRG00000018584)	ENSABRG00000018576	ENSABRG00000017810	GSS (ENSABRG00000017463)	ACSS2 (ENSABRG00000017432)	SOGA1 (ENSABRG00000017382)	PTPRT (ENSABRG00000017288)
Duck	MODERN SPECIES	12	STK4 (ENSAPLG00000008260)	KCNS1 (ENSAPLG00000027411)	ENSAPLG00000017021	MATN4 (ENSAPLG00000008140)	RBPJL (ENSAPLG00000008031)	AHCY (ENSAPLG00000007974)	ASIP (ENSAPLG00000007960)	EIF2S2 (ENSAPLG00000013245)	RALY (ENSAPLG00000012983)	ENSAPLG00000012568	CHMP4B (ENSAPLG00000012481)	ZNF341 (ENSAPLG00000012237)	PXMP4 (ENSAPLG00000012234)	NECAB3 (ENSAPLG00000011538)	CBFA2T2 (ENSAPLG00000011108)	SNTA1 (ENSAPLG00000030952) #22	TOX2 (ENSAPLG00000009436)	EDEM2 (ENSAPLG00000009712)	TRPC4AP (ENSAPLG00000009980)	ENSAPLG00000011220	GSS (ENSAPLG00000015589)	ACSS2 (ENSAPLG00000015932)	ENSAPLG00000023177	ENSAPLG00000002683	MYBL2 (ENSAPLG00000005213)	IFT52 (ENSAPLG00000005680)	SGK2 (ENSAPLG00000006291)	SLC32A1 (ENSAPLG00000007083)	ARHGAP40 (ENSAPLG00000007202)	ENSAPLG00000023291	ACTR5 (ENSAPLG00000007588)
Neognathae_b	ANCESTRAL SPECIES	17	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000155326	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b	ENSGT00490000043380	ENSGT00940000162174	ENSGT00950000186009	ENSGT00720000108866
Passeriformes	ANCESTRAL SPECIES	19	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000155326	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b	ENSGT00490000043380	ENSGT00940000162174	ENSGT00950000186009	ENSGT00720000108866
Great tit	MODERN SPECIES	12	ENSPMJG00000002059	ENSPMJG00000002089	AHCY (ENSPMJG00000002096)	ASIP (ENSPMJG00000002109)	EIF2S2 (ENSPMJG00000002209)	RALY (ENSPMJG00000002234)	ENSPMJG00000002258	ENSPMJG00000002264	CHMP4B (ENSPMJG00000002283)	ZNF341 (ENSPMJG00000002302)	E2F1 (ENSPMJG00000002326)	NECAB3 (ENSPMJG00000002376)	ACTL10 (ENSPMJG00000002387)	CBFA2T2 (ENSPMJG00000002396)	ENSPMJG00000002424	SNTA1 (ENSPMJG00000002437) #22	TOX2 (ENSPMJG00000002480)	EDEM2 (ENSPMJG00000002496)	TRPC4AP (ENSPMJG00000002524)	ENSPMJG00000002555	GSS (ENSPMJG00000002581)	ACSS2 (ENSPMJG00000002589)	SOGA1 (ENSPMJG00000002632)	PTPRT (ENSPMJG00000002773)	MYBL2 (ENSPMJG00000002868)	IFT52 (ENSPMJG00000002877)	SGK2 (ENSPMJG00000002883)	SLC32A1 (ENSPMJG00000002922)	ARHGAP40 (ENSPMJG00000002928)	ENSPMJG00000002948	ACTR5 (ENSPMJG00000002951)
Passeriformes_d	ANCESTRAL SPECIES	19	ENSGT00940000171155	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601.fb	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000155326	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b	ENSGT00490000043380	ENSGT00940000162174	ENSGT00950000186009	ENSGT00720000108866
Flycatcher	MODERN SPECIES	12	ENSFALG00000025812	ENSFALG00000012779	ENSFALG00000027527	AHCY (ENSFALG00000010589)	ASIP (ENSFALG00000025930)	EIF2S2 (ENSFALG00000010608)	ENSFALG00000026368	CHMP4B (ENSFALG00000005962)	ZNF341 (ENSFALG00000005944)	PXMP4 (ENSFALG00000005928)	ENSFALG00000005914	ENSFALG00000005907	ACTL10 (ENSFALG00000014485)	ENSFALG00000024659	CBFA2T2 (ENSFALG00000005880)	SNTA1 (ENSFALG00000005861) #22	ENSFALG00000005857	ENSFALG00000024458	ENSFALG00000023711	ENSFALG00000005853	TRPC4AP (ENSFALG00000005846)	ENSFALG00000005834	GSS (ENSFALG00000022988)	ENSFALG00000005787	ENSFALG00000005767	ENSFALG00000005753	MYBL2 (ENSFALG00000005745)	ENSFALG00000005735	SGK2 (ENSFALG00000005698)	ENSFALG00000005684	ENSFALG00000005682
Passeriformes_g	ANCESTRAL SPECIES	19	ENSGT00940000171155.c	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601.fb	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000155326	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b	ENSGT00490000043380	ENSGT00940000162174	ENSGT00950000186009	ENSGT00720000108866
Passeroidea	ANCESTRAL SPECIES	18	ENSGT00940000160455	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601.fb	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000155326	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b	ENSGT00490000043380	ENSGT00940000162174	ENSGT00950000186009	ENSGT00720000108866
Zebra finch	MODERN SPECIES	13	EIF6 (ENSTGUG00000024120)	MMP24 (ENSTGUG00000003646)	AHCY (ENSTGUG00000003666)	ASIP (ENSTGUG00000019882)	EIF2S2 (ENSTGUG00000024815)	RALY (ENSTGUG00000003715)	ENSTGUG00000003727	CHMP4B (ENSTGUG00000003739)	ZNF341 (ENSTGUG00000003745)	PXMP4 (ENSTGUG00000019081)	E2F1 (ENSTGUG00000028557)	NECAB3 (ENSTGUG00000003767)	ENSTGUG00000020460	CBFA2T2 (ENSTGUG00000003776)	ENSTGUG00000025881	SNTA1 (ENSTGUG00000003805) #22	TOX2 (ENSTGUG00000024441)	EDEM2 (ENSTGUG00000003813)	TRPC4AP (ENSTGUG00000003820)	ENSTGUG00000003883	GSS (ENSTGUG00000004252)	ACSS2 (ENSTGUG00000004272)	SOGA1 (ENSTGUG00000004310)	PTPRT (ENSTGUG00000004341)	MYBL2 (ENSTGUG00000004426)	IFT52 (ENSTGUG00000004454)	SGK2 (ENSTGUG00000004480)	SLC32A1 (ENSTGUG00000004537)	ARHGAP40 (ENSTGUG00000004541)	ENSTGUG00000027806	ACTR5 (ENSTGUG00000004563)
Common canary	MODERN SPECIES	21		MAP1LC3A (ENSSCAG00000008224)	DYNLRB1 (ENSSCAG00000008227)	ITCH (ENSSCAG00000008233)	AHCY (ENSSCAG00000008244)	ASIP (ENSSCAG00000008252)	EIF2S2 (ENSSCAG00000008277)	RALY (ENSSCAG00000008287)	CHMP4B (ENSSCAG00000008301)	ZNF341 (ENSSCAG00000008321)	PXMP4 (ENSSCAG00000008359)	E2F1 (ENSSCAG00000008365)	NECAB3 (ENSSCAG00000008372)	ACTL10 (ENSSCAG00000008374)	CBFA2T2 (ENSSCAG00000008377)	SNTA1 (ENSSCAG00000008383) #22	TOX2 (ENSSCAG00000008392)	EDEM2 (ENSSCAG00000008399)	TRPC4AP (ENSSCAG00000008405)	ENSSCAG00000008445	GSS (ENSSCAG00000008801)	ACSS2 (ENSSCAG00000008852)	SOGA1 (ENSSCAG00000009234)	PTPRT (ENSSCAG00000009769)	MYBL2 (ENSSCAG00000012134)	IFT52 (ENSSCAG00000012142)	SGK2 (ENSSCAG00000012152)	SLC32A1 (ENSSCAG00000012166)	ARHGAP40 (ENSSCAG00000012178)	ENSSCAG00000012195	ACTR5 (ENSSCAG00000012202)
Medium ground finch	MODERN SPECIES	261								ENSGFOG00000002622	CHMP4B (ENSGFOG00000002598)	ZNF341 (ENSGFOG00000006272)	PXMP4 (ENSGFOG00000006264)	E2F1 (ENSGFOG00000006251)	ENSGFOG00000006244	ENSGFOG00000006238	CBFA2T2 (ENSGFOG00000006230)	SNTA1 (ENSGFOG00000005847) #22	TOX2 (ENSGFOG00000005826)
Neognathae_c	ANCESTRAL SPECIES	20	ENSGT00940000158853	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000154258.a	ENSGT00390000001804	ENSGT00940000157601	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a	ENSGT00940000162922	ENSGT00950000183176.a	ENSGT00950000182863.A.a.b #22	ENSGT00940000158764	ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000155326	ENSGT00940000156091.b	ENSGT00390000011581	ENSGT00940000153776.a.b	ENSGT00490000043380	ENSGT00940000162174	ENSGT00950000186009	ENSGT00720000108866
Golden eagle	MODERN SPECIES	19	MAP1LC3A (ENSACCG00020002899)	DYNLRB1 (ENSACCG00020002883)	ITCH (ENSACCG00020002861)	AHCY (ENSACCG00020002842)	ASIP (ENSACCG00020002830)	EIF2S2 (ENSACCG00020002819)	RALY (ENSACCG00020002798)	ENSACCG00020002769	CHMP4B (ENSACCG00020002728)	ZNF341 (ENSACCG00020002715)	PXMP4 (ENSACCG00020002694)	E2F1 (ENSACCG00020002681)	ENSACCG00020002662	NECAB3 (ENSACCG00020002653)	CBFA2T2 (ENSACCG00020002633)	SNTA1 (ENSACCG00020002610) #22	TOX2 (ENSACCG00020002591)	EDEM2 (ENSACCG00020002573)	TRPC4AP (ENSACCG00020002473)	ENSACCG00020002312	GSS (ENSACCG00020002255)	ACSS2 (ENSACCG00020002220)	SOGA1 (ENSACCG00020002169)	PTPRT (ENSACCG00020001463)	ENSACCG00020000632	MYBL2 (ENSACCG00020000610)	IFT52 (ENSACCG00020000543)	SGK2 (ENSACCG00020000501)	SLC32A1 (ENSACCG00020000471)	ARHGAP40 (ENSACCG00020000449)	ENSACCG00020000427
Kakapo	MODERN SPECIES	5	MMP24 (ENSSHBG00005009131)	DYNLRB1 (ENSSHBG00005009106)	ITCH (ENSSHBG00005009097)	AHCY (ENSSHBG00005009088)	ASIP (ENSSHBG00005009077)	EIF2S2 (ENSSHBG00005009063)	RALY (ENSSHBG00005009054)	ENSSHBG00005009032	CHMP4B (ENSSHBG00005009015)	ZNF341 (ENSSHBG00005008883)	PXMP4 (ENSSHBG00005008859)	E2F1 (ENSSHBG00005008851)	ACTL10 (ENSSHBG00005008845)	NECAB3 (ENSSHBG00005008836)	CBFA2T2 (ENSSHBG00005008694)	SNTA1 (ENSSHBG00005008668) #22	TOX2 (ENSSHBG00005008660)	EDEM2 (ENSSHBG00005008654)	TRPC4AP (ENSSHBG00005008644)	ENSSHBG00005008524	GSS (ENSSHBG00005008492)	ACSS2 (ENSSHBG00005008484)	SOGA1 (ENSSHBG00005008471)	ENSSHBG00005008462	ENSSHBG00005008453	EMILIN3 (ENSSHBG00005008424)	LPIN3 (ENSSHBG00005008414)	ZHX3 (ENSSHBG00005008409)	PLCG1 (ENSSHBG00005007241)	TOP1 (ENSSHBG00005006987)	MAFB (ENSSHBG00005006969)
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	740															ENSSCUG00000012193 #22	ENSSCUG00000012196 #22	TOX2 (ENSSCUG00000012201)	EDEM2 (ENSSCUG00000012208)	TRPC4AP (ENSSCUG00000012213)	ENSSCUG00000012492	GSS (ENSSCUG00000013101)	ACSS2 (ENSSCUG00000013104)
African ostrich	MODERN SPECIES	740																ENSSCUG00000012193 #22	ENSSCUG00000012196 #22	TOX2 (ENSSCUG00000012201)	EDEM2 (ENSSCUG00000012208)	TRPC4AP (ENSSCUG00000012213)	ENSSCUG00000012492	GSS (ENSSCUG00000013101)	ACSS2 (ENSSCUG00000013104)
Australian saltwater crocodile	MODERN SPECIES	41	DYNLRB1 (ENSCPRG00005012837)	ITCH (ENSCPRG00005012830)	AHCY (ENSCPRG00005012824)	ASIP (ENSCPRG00005012814)	EIF2S2 (ENSCPRG00005012797)	RALY (ENSCPRG00005012788)	ENSCPRG00005012778	CHMP4B (ENSCPRG00005012772)	ZNF341 (ENSCPRG00005012761)	PXMP4 (ENSCPRG00005012758)	E2F1 (ENSCPRG00005012754)	ACTL10 (ENSCPRG00005012747)	ENSCPRG00005012740	NECAB3 (ENSCPRG00005012733)	CBFA2T2 (ENSCPRG00005012718)	SNTA1 (ENSCPRG00005012705) #22	TOX2 (ENSCPRG00005012700)	ENSCPRG00005012691	ENSCPRG00005012655	EDEM2 (ENSCPRG00005012648)	TRPC4AP (ENSCPRG00005012634)	ENSCPRG00005012542	ENSCPRG00005012528	ENSCPRG00005012521	ENSCPRG00005012518	MYBL2 (ENSCPRG00005012490)	IFT52 (ENSCPRG00005012475)	SGK2 (ENSCPRG00005012467)	ARHGAP40 (ENSCPRG00005012456)	ENSCPRG00005012455	ACTR5 (ENSCPRG00005012453)
Anura	ANCESTRAL SPECIES	50	ENSGT00390000011067.A	ENSGT00940000157014	ENSGT00950000182981.a	ENSGT00940000176173	ENSGT00390000001804	ENSGT00940000157601	ENSGT00940000154663	ENSGT00390000000546	ENSGT00390000001562	ENSGT00940000159472	ENSGT00950000183131.a.d	ENSGT00950000183131.a.c	ENSGT01070000255540	ENSGT00950000183176.a	ENSGT00390000018558	ENSGT00950000182863.A.a.b #22	ENSGT00940000168101.a	ENSGT00940000158764	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867
Frog	MODERN SPECIES	1	ahcy (ENSXETG00000019486)	dynlrb1 (ENSXETG00000019475)	eif2s2 (ENSXETG00000019507)	asip (ENSXETG00000044164)	raly (ENSXETG00000019514)	ENSXETG00000045900	chmp4b (ENSXETG00000043359)	znf341 (ENSXETG00000021426)	pxmp4 (ENSXETG00000042606)	e2f1 (ENSXETG00000046118)	ENSXETG00000037342	ENSXETG00000031462	cbfa2t2 (ENSXETG00000021431)	pigt (ENSXETG00000021432)	ENSXETG00000034447	snta1 (ENSXETG00000021433) #22	tigd3 (ENSXETG00000034340)	tox2 (ENSXETG00000021435)	ralgapb (ENSXETG00000021438)	ENSXETG00000038070	chd6 (ENSXETG00000021445)	rbl1 (ENSXETG00000007414)	ENSXETG00000045039	ENSXETG00000038789	ENSXETG00000046162	samhd1 (ENSXETG00000007416)	ENSXETG00000040827	ergic3 (ENSXETG00000007419)	mgc145685 (ENSXETG00000030107)	ENSXETG00000039719	st3gal2.2 (ENSXETG00000007422)
Leishan spiny toad	MODERN SPECIES	3	SS18L1 (ENSLLEG00000030159)	PSMA7 (ENSLLEG00000030206)	ENSLLEG00000030338	TAF4 (ENSLLEG00000030383)	CDH4 (ENSLLEG00000014748)	ENSLLEG00000017422	ENSLLEG00000017493	CDH26 (ENSLLEG00000018521)	FAM217B (ENSLLEG00000019972)	PPP1R3D (ENSLLEG00000020009)	PHACTR3 (ENSLLEG00000020053)	EDN3 (ENSLLEG00000020159)	ENSLLEG00000020215	ENSLLEG00000020282	PRELID3B (ENSLLEG00000020377)	SNTA1 (ENSLLEG00000020660) #22	ENSLLEG00000020769	TOX2 (ENSLLEG00000020800)	RALGAPB (ENSLLEG00000021136)	CHD6 (ENSLLEG00000021568)	RBL1 (ENSLLEG00000022085)	ENSLLEG00000022468	ENSLLEG00000023541	ERGIC3 (ENSLLEG00000023746)	ENSLLEG00000023988	ENSLLEG00000024093	ENSLLEG00000024348	ENSLLEG00000024396	ENSLLEG00000024707	CPNE1 (ENSLLEG00000024748)	ENSLLEG00000025037
Coelacanth	MODERN SPECIES	961									ENSLACG00000002082	CHMP4B (ENSLACG00000005330)	ZNF341 (ENSLACG00000006139)	PXMP4 (ENSLACG00000006704)	E2F1 (ENSLACG00000006930)	NECAB3 (ENSLACG00000008280)	CBFA2T2 (ENSLACG00000009564)	SNTA1 (ENSLACG00000010986) #22	ENSLACG00000011487	TOX2 (ENSLACG00000012232)