Euteleostomi	ANCESTRAL SPECIES	23	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a #33	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Sarcopterygii	ANCESTRAL SPECIES	19	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a #33	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00940000173464
Tetrapoda	ANCESTRAL SPECIES	10	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a #33	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Amniota	ANCESTRAL SPECIES	16	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a #33	ENSGT00390000007883 #35	ENSGT00940000167638
Mammalia	ANCESTRAL SPECIES	35	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293.a	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34
Theria	ANCESTRAL SPECIES	20	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293.a	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34
Eutheria	ANCESTRAL SPECIES	18	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293.a	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35
Boreoeutheria	ANCESTRAL SPECIES	20	ENSGT00910000147466	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35
Euarchontoglires	ANCESTRAL SPECIES	20	ENSGT00910000147466	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35
Primates	ANCESTRAL SPECIES	22	ENSGT00910000147466	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Haplorrhini	ANCESTRAL SPECIES	40	ENSGT00910000147466	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Simiiformes	ANCESTRAL SPECIES	4	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00910000146904	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Catarrhini	ANCESTRAL SPECIES	4	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00910000146904	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.w #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00910000146904	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.w #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670.f.b #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.w #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670.f.b #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00910000147920	ENSGT00550000074969 #15	ENSGT00940000155143.w #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670.f.b #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00910000147920	ENSGT00550000074969 #15	ENSGT00940000155143.w #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670.f.b #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Olive baboon	MODERN SPECIES	19	RFLNA (ENSPANG00000018997) #7	ZNF664 (ENSPANG00000017820) #8	CCDC92 (ENSPANG00000017666) #9	DNAH10 (ENSPANG00000033470) #10	ATP6V0A2 (ENSPANG00000011005) #11	TCTN2 (ENSPANG00000018321) #12	GTF2H3 (ENSPANG00000034800) #13	EIF2B1 (ENSPANG00000014998) #14	DDX55 (ENSPANG00000007905) #15	TMED2 (ENSPANG00000004344) #16	RILPL1 (ENSPANG00000015966) #17	SNRNP35 (ENSPANG00000019739) #18	RILPL2 (ENSPANG00000017667) #19	KMT5A (ENSPANG00000021215) #20	SBNO1 (ENSPANG00000011640) #21	CDK2AP1 (ENSPANG00000026348) #22	MTRFR (ENSPANG00000015388) #23	MPHOSPH9 (ENSPANG00000018731) #24	PITPNM2 (ENSPANG00000009218) #25	ARL6IP4 (ENSPANG00000003696) #26	OGFOD2 (ENSPANG00000005291) #27	ABCB9 (ENSPANG00000026349) #28	VPS37B (ENSPANG00000004641) #29	HIP1R (ENSPANG00000014287) #30	CCDC62 (ENSPANG00000022212) #31	DENR (ENSPANG00000030074) #32	HCAR1 (ENSPANG00000017072) #33	ENSPANG00000003482 #34	KNTC1 (ENSPANG00000031551) #35	RSRC2 (ENSPANG00000026350) #36	ZCCHC8 (ENSPANG00000016071) #37
Cercopithecinae_d	ANCESTRAL SPECIES	5	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00910000147920	ENSGT00550000074969 #15	ENSGT00940000155143.w #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670.f.a ##26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Drill	MODERN SPECIES	1430													RILPL2 (ENSMLEG00000035437) #19	KMT5A (ENSMLEG00000023037) #20	SBNO1 (ENSMLEG00000033260) #21	CDK2AP1 (ENSMLEG00000036041) #22	MTRFR (ENSMLEG00000044309) #23	MPHOSPH9 (ENSMLEG00000040561) #24	PITPNM2 (ENSMLEG00000028720) #25	OGFOD2 (ENSMLEG00000035134) #27	ABCB9 (ENSMLEG00000040656) #28	VPS37B (ENSMLEG00000034523) #29	HIP1R (ENSMLEG00000042588) #30	CCDC62 (ENSMLEG00000042422) #31	DENR (ENSMLEG00000032214) #32	HCAR1 (ENSMLEG00000006694) #33	KNTC1 (ENSMLEG00000029217) #35	RSRC2 (ENSMLEG00000027445) #36	ZCCHC8 (ENSMLEG00000031615) #37	CLIP1 (ENSMLEG00000033426)	ENSMLEG00000037828
Sooty mangabey	MODERN SPECIES	165	RFLNA (ENSCATG00000016543) #7	ZNF664 (ENSCATG00000021857) #8	CCDC92 (ENSCATG00000035552) #9	DNAH10 (ENSCATG00000041031) #10	ATP6V0A2 (ENSCATG00000037576) #11	TCTN2 (ENSCATG00000012402) #12	GTF2H3 (ENSCATG00000031177) #13	EIF2B1 (ENSCATG00000033185) #14	DDX55 (ENSCATG00000034315) #15	TMED2 (ENSCATG00000037859) #16	RILPL1 (ENSCATG00000036375) #17	SNRNP35 (ENSCATG00000021946) #18	RILPL2 (ENSCATG00000030188) #19	KMT5A (ENSCATG00000044520) #20	SBNO1 (ENSCATG00000008239) #21	CDK2AP1 (ENSCATG00000034763) #22	MTRFR (ENSCATG00000040685) #23	MPHOSPH9 (ENSCATG00000044634) #24	PITPNM2 (ENSCATG00000009671) #25	ENSCATG00000000284 ##26	OGFOD2 (ENSCATG00000039466) #27	ABCB9 (ENSCATG00000035732) #28	VPS37B (ENSCATG00000036112) #29	HIP1R (ENSCATG00000030681) #30	CCDC62 (ENSCATG00000015482) #31	DENR (ENSCATG00000032375) #32	HCAR1 (ENSCATG00000020672) #33	ENSCATG00000022001 #34	KNTC1 (ENSCATG00000038258) #35	RSRC2 (ENSCATG00000017688) #36	ZCCHC8 (ENSCATG00000041134) #37
Macaca	ANCESTRAL SPECIES	6	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00910000147920	ENSGT00550000074969 #15	ENSGT00940000155143.w #16	ENSGT00390000001014.g	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670.f.b #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Pig-tailed macaque	MODERN SPECIES	78	ZNF664 (ENSMNEG00000039889) #8	CCDC92 (ENSMNEG00000033989) #9	DNAH10 (ENSMNEG00000033824) #10	ATP6V0A2 (ENSMNEG00000038704) #11	TCTN2 (ENSMNEG00000041742) #12	GTF2H3 (ENSMNEG00000043057) #13	EIF2B1 (ENSMNEG00000043081) #14	DDX55 (ENSMNEG00000028630) #15	TMED2 (ENSMNEG00000039887) #16	ENSMNEG00000004871	RILPL1 (ENSMNEG00000016061) #17	SNRNP35 (ENSMNEG00000018139) #18	RILPL2 (ENSMNEG00000012542) #19	KMT5A (ENSMNEG00000044333) #20	SBNO1 (ENSMNEG00000003142) #21	CDK2AP1 (ENSMNEG00000037120) #22	MTRFR (ENSMNEG00000044673) #23	MPHOSPH9 (ENSMNEG00000038765) #24	PITPNM2 (ENSMNEG00000038517) #25	ARL6IP4 (ENSMNEG00000015953) #26	OGFOD2 (ENSMNEG00000030487) #27	ABCB9 (ENSMNEG00000036094) #28	VPS37B (ENSMNEG00000036740) #29	HIP1R (ENSMNEG00000043631) #30	CCDC62 (ENSMNEG00000029632) #31	DENR (ENSMNEG00000034844) #32	KNTC1 (ENSMNEG00000032145) #35	RSRC2 (ENSMNEG00000032210) #36	ZCCHC8 (ENSMNEG00000038672) #37	CLIP1 (ENSMNEG00000037999)	ENSMNEG00000036043
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00910000147920	ENSGT00550000074969 #15	ENSGT00940000155143.w #16	ENSGT00390000001014.g	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670.f.b #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Rhesus	MODERN SPECIES	2	DNAH10 (ENSMMUG00000006861) #10	ATP6V0A2 (ENSMMUG00000006546) #11	TCTN2 (ENSMMUG00000064225) #12	ENSMMUG00000055109	GTF2H3 (ENSMMUG00000004592) #13	EIF2B1 (ENSMMUG00000013181) #14	DDX55 (ENSMMUG00000013178) #15	TMED2 (ENSMMUG00000058836) #16	ENSMMUG00000053227	ENSMMUG00000023048	RILPL1 (ENSMMUG00000008416) #17	SNRNP35 (ENSMMUG00000008411) #18	RILPL2 (ENSMMUG00000031493) #19	KMT5A (ENSMMUG00000013514) #20	SBNO1 (ENSMMUG00000011496) #21	CDK2AP1 (ENSMMUG00000000434) #22	MTRFR (ENSMMUG00000031495) #23	MPHOSPH9 (ENSMMUG00000019678) #24	PITPNM2 (ENSMMUG00000015931) #25	ARL6IP4 (ENSMMUG00000015930) #26	OGFOD2 (ENSMMUG00000015926) #27	ABCB9 (ENSMMUG00000005301) #28	VPS37B (ENSMMUG00000039447) #29	HIP1R (ENSMMUG00000015221) #30	CCDC62 (ENSMMUG00000017102) #31	DENR (ENSMMUG00000055252) #32	HCAR1 (ENSMMUG00000054216) #33	ENSMMUG00000019939 #34	KNTC1 (ENSMMUG00000007556) #35	RSRC2 (ENSMMUG00000004412) #36	ZCCHC8 (ENSMMUG00000013643) #37
Crab-eating macaque	MODERN SPECIES	2	CCDC92 (ENSMFAG00000040841) #9	DNAH10 (ENSMFAG00000002950) #10	ATP6V0A2 (ENSMFAG00000039847) #11	TCTN2 (ENSMFAG00000031900) #12	GTF2H3 (ENSMFAG00000035951) #13	ENSMFAG00000063530	EIF2B1 (ENSMFAG00000000483) #14	DDX55 (ENSMFAG00000038165) #15	TMED2 (ENSMFAG00000039002) #16	ENSMFAG00000010688	RILPL1 (ENSMFAG00000041844) #17	SNRNP35 (ENSMFAG00000008986) #18	RILPL2 (ENSMFAG00000034620) #19	KMT5A (ENSMFAG00000002095) #20	SBNO1 (ENSMFAG00000031429) #21	CDK2AP1 (ENSMFAG00000030853) #22	MTRFR (ENSMFAG00000052414) #23	MPHOSPH9 (ENSMFAG00000046071) #24	ENSMFAG00000003988 #25	PITPNM2 (ENSMFAG00000065561) #25	ARL6IP4 (ENSMFAG00000034524) ##26	OGFOD2 (ENSMFAG00000030315) #27	ABCB9 (ENSMFAG00000002483) #28	VPS37B (ENSMFAG00000040044) #29	HIP1R (ENSMFAG00000046309) #30	CCDC62 (ENSMFAG00000043307) #31	DENR (ENSMFAG00000038312) #32	HCAR1 (ENSMFAG00000028540) #33	ENSMFAG00000036514 #34	KNTC1 (ENSMFAG00000045398) #35	RSRC2 (ENSMFAG00000036398) #36
Vervet Monkey	MODERN SPECIES	2	RFLNA (ENSCSAG00000002030) #7	ZNF664 (ENSCSAG00000018951) #8	CCDC92 (ENSCSAG00000002033) #9	DNAH10 (ENSCSAG00000002042) #10	ATP6V0A2 (ENSCSAG00000002049) #11	TCTN2 (ENSCSAG00000002052) #12	GTF2H3 (ENSCSAG00000002054) #13	EIF2B1 (ENSCSAG00000002056) #14	DDX55 (ENSCSAG00000002057) #15	TMED2 (ENSCSAG00000002059) #16	RILPL1 (ENSCSAG00000002061) #17	SNRNP35 (ENSCSAG00000018950) #18	RILPL2 (ENSCSAG00000002062) #19	KMT5A (ENSCSAG00000002063) #20	SBNO1 (ENSCSAG00000002064) #21	CDK2AP1 (ENSCSAG00000002066) #22	MTRFR (ENSCSAG00000002068) #23	MPHOSPH9 (ENSCSAG00000002071) #24	PITPNM2 (ENSCSAG00000002073) #25	ARL6IP4 (ENSCSAG00000002076) #26	OGFOD2 (ENSCSAG00000002079) #27	ABCB9 (ENSCSAG00000002080) #28	VPS37B (ENSCSAG00000002083) #29	HIP1R (ENSCSAG00000002086) #30	CCDC62 (ENSCSAG00000002091) #31	DENR (ENSCSAG00000002095) #32	HCAR1 (ENSCSAG00000018949) #33	ENSCSAG00000018948 #34	KNTC1 (ENSCSAG00000002105) #35	RSRC2 (ENSCSAG00000002113) #36	ZCCHC8 (ENSCSAG00000002121) #37
Rhinopithecus	ANCESTRAL SPECIES	9	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00910000146904	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.w #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293.a	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670.f.b #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	3355																ENSRROG00000034904 #22	RNF144A (ENSRROG00000038778)	RSAD2 (ENSRROG00000002112)	CMPK2 (ENSRROG00000024876)	ENSRROG00000042042
Golden snub-nosed monkey	MODERN SPECIES	1385	ZNF664 (ENSRROG00000023460) #8	CCDC92 (ENSRROG00000036618) #9	ENSRROG00000037049	DNAH10 (ENSRROG00000031183) #10	ATP6V0A2 (ENSRROG00000044128) #11	TCTN2 (ENSRROG00000035192) #12	GTF2H3 (ENSRROG00000029576) #13	EIF2B1 (ENSRROG00000028294) #14	DDX55 (ENSRROG00000024824) #15	TMED2 (ENSRROG00000042024) #16	RILPL1 (ENSRROG00000044060) #17	SNRNP35 (ENSRROG00000032878) #18	RILPL2 (ENSRROG00000032982) #19	KMT5A (ENSRROG00000036893) #20	SBNO1 (ENSRROG00000034230) #21	ENSRROG00000040765 #22	MTRFR (ENSRROG00000031384) #23	MPHOSPH9 (ENSRROG00000041367) #24	PITPNM2 (ENSRROG00000043832) #25	ENSRROG00000032973 ##26	OGFOD2 (ENSRROG00000007487) #27	ENSRROG00000040630	ABCB9 (ENSRROG00000039556) #28	VPS37B (ENSRROG00000041745) #29	HIP1R (ENSRROG00000038353) #30	CCDC62 (ENSRROG00000043713) #31	DENR (ENSRROG00000044446) #32	HCAR1 (ENSRROG00000013190) #33	ENSRROG00000032502 #34	KNTC1 (ENSRROG00000035417) #35	RSRC2 (ENSRROG00000035154) #36
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	111	ZNF664 (ENSRBIG00000029795) #8	CCDC92 (ENSRBIG00000032240) #9	DNAH10 (ENSRBIG00000042075) #10	ENSRBIG00000042041	ATP6V0A2 (ENSRBIG00000040959) #11	TCTN2 (ENSRBIG00000030163) #12	GTF2H3 (ENSRBIG00000044453) #13	EIF2B1 (ENSRBIG00000035339) #14	DDX55 (ENSRBIG00000044699) #15	TMED2 (ENSRBIG00000038769) #16	RILPL1 (ENSRBIG00000043454) #17	SNRNP35 (ENSRBIG00000043111) #18	RILPL2 (ENSRBIG00000036250) #19	ENSRBIG00000033024	SBNO1 (ENSRBIG00000034510) #21	ENSRBIG00000032246 #22	MTRFR (ENSRBIG00000040789) #23	MPHOSPH9 (ENSRBIG00000038508) #24	PITPNM2 (ENSRBIG00000044969) #25	ENSRBIG00000035918 #26	OGFOD2 (ENSRBIG00000035782) #27	ABCB9 (ENSRBIG00000043975) #28	ENSRBIG00000027073	VPS37B (ENSRBIG00000039462) #29	HIP1R (ENSRBIG00000001500) #30	CCDC62 (ENSRBIG00000042680) #31	DENR (ENSRBIG00000041357) #32	HCAR1 (ENSRBIG00000006884) #33	ENSRBIG00000034940 #34	KNTC1 (ENSRBIG00000032859) #35	RSRC2 (ENSRBIG00000007493) #36
Black snub-nosed monkey	MODERN SPECIES	1303																ENSRBIG00000028837 #22	RNF144A (ENSRBIG00000042511)	RSAD2 (ENSRBIG00000037815)	CMPK2 (ENSRBIG00000042864)	ENSRBIG00000033394
Hominoidea	ANCESTRAL SPECIES	5	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00910000146904	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.w #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Gibbon	MODERN SPECIES		ZNF664 (ENSNLEG00000034756) #8	CCDC92 (ENSNLEG00000002325) #9	ENSNLEG00000002323	DNAH10 (ENSNLEG00000002049) #10	ATP6V0A2 (ENSNLEG00000001958) #11	TCTN2 (ENSNLEG00000001951) #12	GTF2H3 (ENSNLEG00000001843) #13	EIF2B1 (ENSNLEG00000028701) #14	DDX55 (ENSNLEG00000001658) #15	TMED2 (ENSNLEG00000001652) #16	ENSNLEG00000027322 #17	SNRNP35 (ENSNLEG00000029859) #18	RILPL2 (ENSNLEG00000001614) #19	ENSNLEG00000031255	SBNO1 (ENSNLEG00000001502) #21	ENSNLEG00000001478 #22	MTRFR (ENSNLEG00000001470) #23	MPHOSPH9 (ENSNLEG00000001405) #24	ENSNLEG00000030288	ENSNLEG00000002378 #26	ENSNLEG00000002315 #27	ENSNLEG00000002281 #28	VPS37B (ENSNLEG00000002279) #29	CCDC62 (ENSNLEG00000002193) #31	DENR (ENSNLEG00000029880) #32	KNTC1 (ENSNLEG00000001977) #35	RSRC2 (ENSNLEG00000034529) #36	ZCCHC8 (ENSNLEG00000001723) #37	CLIP1 (ENSNLEG00000001559)	VPS33A (ENSNLEG00000001520)	DIABLO (ENSNLEG00000001453)
Hominidae	ANCESTRAL SPECIES	4	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00910000146904	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.w #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a.b #34	ENSGT00990000203619.A.b.b.b.b.a.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00910000146904	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.w #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030.g.a #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a.b #34	ENSGT00990000203619.A.b.b.b.b.a.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	14	RRM2 (ENSGGOG00000040108)	ENSGGOG00000027524	KLF11 (ENSGGOG00000012494)	GRHL1 (ENSGGOG00000002692)	TAF1B (ENSGGOG00000002685)	ENSGGOG00000001569	ADAM17 (ENSGGOG00000013128)	ENSGGOG00000039328	IAH1 (ENSGGOG00000001760)	CPSF3 (ENSGGOG00000001757)	ITGB1BP1 (ENSGGOG00000001754)	ASAP2 (ENSGGOG00000001744)	MBOAT2 (ENSGGOG00000040459)	KIDINS220 (ENSGGOG00000009822)	ENSGGOG00000042851	ENSGGOG00000042490 #22	RNF144A (ENSGGOG00000039753)	RSAD2 (ENSGGOG00000010720)	ENSGGOG00000036393	ENSGGOG00000004066	SOX11 (ENSGGOG00000037622)	DCDC2C (ENSGGOG00000034923)	ALLC (ENSGGOG00000009821)	COLEC11 (ENSGGOG00000009819)	RPS7 (ENSGGOG00000023095)	RNASEH1 (ENSGGOG00000034822)	ADI1 (ENSGGOG00000034855)	TRAPPC12 (ENSGGOG00000005535)	EIPR1 (ENSGGOG00000013158)	MYT1L (ENSGGOG00000026335)	PXDN (ENSGGOG00000012776)
Gorilla	MODERN SPECIES	3	ZNF664 (ENSGGOG00000042597) #8	CCDC92 (ENSGGOG00000025962) #9	ENSGGOG00000037474	DNAH10 (ENSGGOG00000004210) #10	ATP6V0A2 (ENSGGOG00000008941) #11	TCTN2 (ENSGGOG00000009183) #12	GTF2H3 (ENSGGOG00000009173) #13	EIF2B1 (ENSGGOG00000009165) #14	DDX55 (ENSGGOG00000026102) #15	TMED2 (ENSGGOG00000028536) #16	RILPL1 (ENSGGOG00000014925) #17	SNRNP35 (ENSGGOG00000015936) #18	RILPL2 (ENSGGOG00000010811) #19	ENSGGOG00000010804 #20	SBNO1 (ENSGGOG00000015000) #21	ENSGGOG00000009567 #22	MTRFR (ENSGGOG00000012850) #23	MPHOSPH9 (ENSGGOG00000005581) #24	PITPNM2 (ENSGGOG00000000485) #25	ENSGGOG00000042717 #26	OGFOD2 (ENSGGOG00000000483) #27	ENSGGOG00000036357	ABCB9 (ENSGGOG00000000482) #28	VPS37B (ENSGGOG00000004956) #29	HIP1R (ENSGGOG00000004939) #30	CCDC62 (ENSGGOG00000000255) #31	DENR (ENSGGOG00000005562) #32	HCAR1 (ENSGGOG00000040741) #33	KNTC1 (ENSGGOG00000017074) #35	RSRC2 (ENSGGOG00000005960) #36	ZCCHC8 (ENSGGOG00000027926) #37
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00910000146904	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.w.a #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030.g.a #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a.b #34	ENSGT00990000203619.A.b.b.b.b.a.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Human	MODERN SPECIES	3	RFLNA (ENSG00000178882) #7	ZNF664 (ENSG00000179195) #8	CCDC92 (ENSG00000119242) #9	DNAH10 (ENSG00000197653) #10	ATP6V0A2 (ENSG00000185344) #11	TCTN2 (ENSG00000168778) #12	GTF2H3 (ENSG00000111358) #13	EIF2B1 (ENSG00000111361) #14	DDX55 (ENSG00000111364) #15	TMED2 (ENSG00000086598) #16	RILPL1 (ENSG00000188026) #17	SNRNP35 (ENSG00000184209) #18	RILPL2 (ENSG00000150977) #19	KMT5A (ENSG00000183955) #20	SBNO1 (ENSG00000139697) #21	CDK2AP1 (ENSG00000111328) #22	MTRFR (ENSG00000130921) #23	MPHOSPH9 (ENSG00000051825) #24	PITPNM2 (ENSG00000090975) #25	ARL6IP4 (ENSG00000182196) #26	OGFOD2 (ENSG00000111325) #27	ABCB9 (ENSG00000150967) #28	VPS37B (ENSG00000139722) #29	HIP1R (ENSG00000130787) #30	CCDC62 (ENSG00000130783) #31	DENR (ENSG00000139726) #32	HCAR1 (ENSG00000196917) #33	HCAR3 (ENSG00000255398) #34	HCAR2 (ENSG00000182782) #34	KNTC1 (ENSG00000184445) #35	RSRC2 (ENSG00000111011) #36
Pan	ANCESTRAL SPECIES	4	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00910000146904	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.w.a #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030.g.a #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a.b #34	ENSGT00990000203619.A.b.b.b.b.a.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Chimpanzee	MODERN SPECIES	3	CCDC92 (ENSPTRG00000005611) #9	ENSPTRG00000029492	DNAH10 (ENSPTRG00000005610) #10	ATP6V0A2 (ENSPTRG00000005607) #11	TCTN2 (ENSPTRG00000005606) #12	GTF2H3 (ENSPTRG00000005604) #13	EIF2B1 (ENSPTRG00000005603) #14	DDX55 (ENSPTRG00000005601) #15	TMED2 (ENSPTRG00000052790) #16	RILPL1 (ENSPTRG00000022983) #17	SNRNP35 (ENSPTRG00000023573) #18	RILPL2 (ENSPTRG00000005599) #19	ENSPTRG00000045584	ENSPTRG00000051336 #20	SBNO1 (ENSPTRG00000005597) #21	CDK2AP1 (ENSPTRG00000005596) #22	MTRFR (ENSPTRG00000005595) #23	MPHOSPH9 (ENSPTRG00000005594) #24	PITPNM2 (ENSPTRG00000005592) #25	ARL6IP4 (ENSPTRG00000005590) #26	OGFOD2 (ENSPTRG00000005589) #27	ABCB9 (ENSPTRG00000005588) #28	VPS37B (ENSPTRG00000045750) #29	HIP1R (ENSPTRG00000005586) #30	CCDC62 (ENSPTRG00000005585) #31	DENR (ENSPTRG00000005584) #32	HCAR1 (ENSPTRG00000048839) #33	HCAR3 (ENSPTRG00000032447) #34	ENSPTRG00000039963 #34	KNTC1 (ENSPTRG00000005582) #35	RSRC2 (ENSPTRG00000005580) #36
Bonobo	MODERN SPECIES	3	ENSPPAG00000021260 #7	CCDC92 (ENSPPAG00000032400) #9	ENSPPAG00000029048	DNAH10 (ENSPPAG00000027673) #10	ATP6V0A2 (ENSPPAG00000036820) #11	TCTN2 (ENSPPAG00000024124) #12	GTF2H3 (ENSPPAG00000040080) #13	EIF2B1 (ENSPPAG00000024711) #14	DDX55 (ENSPPAG00000005988) #15	TMED2 (ENSPPAG00000035366) #16	RILPL1 (ENSPPAG00000028559) #17	SNRNP35 (ENSPPAG00000000480) #18	RILPL2 (ENSPPAG00000040819) #19	ENSPPAG00000029299 #20	SBNO1 (ENSPPAG00000024635) #21	ENSPPAG00000031076 #22	MTRFR (ENSPPAG00000029654) #23	MPHOSPH9 (ENSPPAG00000027379) #24	PITPNM2 (ENSPPAG00000035644) #25	ENSPPAG00000028900 #26	OGFOD2 (ENSPPAG00000001068) #27	ABCB9 (ENSPPAG00000043717) #28	VPS37B (ENSPPAG00000036925) #29	HIP1R (ENSPPAG00000039152) #30	CCDC62 (ENSPPAG00000031989) #31	DENR (ENSPPAG00000031425) #32	HCAR1 (ENSPPAG00000014195) #33	HCAR3 (ENSPPAG00000024039) #34	KNTC1 (ENSPPAG00000026291) #35	RSRC2 (ENSPPAG00000038278) #36	ZCCHC8 (ENSPPAG00000044102) #37
Orangutan	DUPLICATION
Orangutan	MODERN SPECIES	14	RRM2 (ENSPPYG00000012656)	CYS1 (ENSPPYG00000012657)	KLF11 (ENSPPYG00000012659)	GRHL1 (ENSPPYG00000012661)	TAF1B (ENSPPYG00000012662)	YWHAQ (ENSPPYG00000012663)	ADAM17 (ENSPPYG00000012664)	IAH1 (ENSPPYG00000012665)	CPSF3 (ENSPPYG00000012666)	ITGB1BP1 (ENSPPYG00000031588)	ASAP2 (ENSPPYG00000012668)	ENSPPYG00000037864	MBOAT2 (ENSPPYG00000012669)	KIDINS220 (ENSPPYG00000012670)	ID2 (ENSPPYG00000012719)	ENSPPYG00000030180 #22	RNF144A (ENSPPYG00000012673)	RSAD2 (ENSPPYG00000012674)	CMPK2 (ENSPPYG00000012675)	SOX11 (ENSPPYG00000036338)	ENSPPYG00000012680	ALLC (ENSPPYG00000012681)	COLEC11 (ENSPPYG00000012682)	RPS7 (ENSPPYG00000025872)	RNASEH1 (ENSPPYG00000025873)	ENSPPYG00000012683	TRAPPC12 (ENSPPYG00000012684)	EIPR1 (ENSPPYG00000012685)	ENSPPYG00000040708	MYT1L (ENSPPYG00000012686)	PXDN (ENSPPYG00000012688)
Orangutan	MODERN SPECIES	3	RFLNA (ENSPPYG00000037621) #7	ZNF664 (ENSPPYG00000005169) #8	CCDC92 (ENSPPYG00000040320) #9	DNAH10 (ENSPPYG00000005097) #10	ATP6V0A2 (ENSPPYG00000005095) #11	TCTN2 (ENSPPYG00000005094) #12	GTF2H3 (ENSPPYG00000005093) #13	EIF2B1 (ENSPPYG00000005092) #14	DDX55 (ENSPPYG00000005091) #15	TMED2 (ENSPPYG00000005090) #16	RILPL1 (ENSPPYG00000005089) #17	SNRNP35 (ENSPPYG00000005088) #18	RILPL2 (ENSPPYG00000005087) #19	KMT5A (ENSPPYG00000037319) #20	SBNO1 (ENSPPYG00000005084) #21	ENSPPYG00000005083 #22	MTRFR (ENSPPYG00000038126) #23	MPHOSPH9 (ENSPPYG00000005081) #24	PITPNM2 (ENSPPYG00000005080) #25	ENSPPYG00000005079 #26	OGFOD2 (ENSPPYG00000005078) #27	ABCB9 (ENSPPYG00000005077) #28	VPS37B (ENSPPYG00000005076) #29	HIP1R (ENSPPYG00000005075) #30	CCDC62 (ENSPPYG00000005074) #31	DENR (ENSPPYG00000005073) #32	HCAR1 (ENSPPYG00000005072) #33	HCAR3 (ENSPPYG00000033289) #34	HCAR2 (ENSPPYG00000037770) #34	KNTC1 (ENSPPYG00000005070) #35	RSRC2 (ENSPPYG00000005069) #36
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00430000031027.a #9	ENSGT00910000146904	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030.e #20	ENSGT00940000160030.f #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349.ib.a #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142.a.a #36	ENSGT00390000011475 #37
Mas night monkey	MODERN SPECIES	423	ENSANAG00000025189 #9	ENSANAG00000021361	DNAH10 (ENSANAG00000028344) #10	ATP6V0A2 (ENSANAG00000034704) #11	TCTN2 (ENSANAG00000021707) #12	GTF2H3 (ENSANAG00000034712) #13	EIF2B1 (ENSANAG00000027417) #14	DDX55 (ENSANAG00000034064) #15	TMED2 (ENSANAG00000027113) #16	ENSANAG00000035829	RILPL1 (ENSANAG00000032127) #17	SNRNP35 (ENSANAG00000025109) #18	RILPL2 (ENSANAG00000024015) #19	ENSANAG00000035218 #20	SBNO1 (ENSANAG00000029958) #21	CDK2AP1 (ENSANAG00000026633) #22	MTRFR (ENSANAG00000022881) #23	MPHOSPH9 (ENSANAG00000025443) #24	PITPNM2 (ENSANAG00000028804) #25	ARL6IP4 (ENSANAG00000035845) #26	OGFOD2 (ENSANAG00000016780) #27	ABCB9 (ENSANAG00000029110) #28	VPS37B (ENSANAG00000033036) #29	HIP1R (ENSANAG00000026322) #30	CCDC62 (ENSANAG00000022821) #31	ENSANAG00000033479 #32	KNTC1 (ENSANAG00000036185) #35	ENSANAG00000024979 #36	ZCCHC8 (ENSANAG00000035627) #37	ENSANAG00000019537
Cebidae	ANCESTRAL SPECIES	2	ENSGT00430000031027.a #9	ENSGT00910000146904	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030.e #20	ENSGT00940000160030.f #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349.ib.a #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142.a.a #36	ENSGT00390000011475 #37
Marmoset	MODERN SPECIES	21	ZNF664 (ENSCJAG00000038572) #8	CCDC92 (ENSCJAG00000038706) #9	DNAH10 (ENSCJAG00000020511) #10	ATP6V0A2 (ENSCJAG00000020504) #11	TCTN2 (ENSCJAG00000020498) #12	GTF2H3 (ENSCJAG00000020493) #13	EIF2B1 (ENSCJAG00000020484) #14	DDX55 (ENSCJAG00000020471) #15	TMED2 (ENSCJAG00000020466) #16	RILPL1 (ENSCJAG00000007134) #17	SNRNP35 (ENSCJAG00000007131) #18	RILPL2 (ENSCJAG00000004405) #19	KMT5A (ENSCJAG00000016696) #20	ENSCJAG00000077792	SBNO1 (ENSCJAG00000016599) #21	CDK2AP1 (ENSCJAG00000040056) #22	ENSCJAG00000016579 #23	MPHOSPH9 (ENSCJAG00000016546) #24	PITPNM2 (ENSCJAG00000016487) #25	OGFOD2 (ENSCJAG00000016459) #27	ABCB9 (ENSCJAG00000016428) #28	VPS37B (ENSCJAG00000043040) #29	HIP1R (ENSCJAG00000016370) #30	CCDC62 (ENSCJAG00000016343) #31	DENR (ENSCJAG00000020488) #32	ENSCJAG00000078696	HCAR1 (ENSCJAG00000020485) #33	ENSCJAG00000043575 #34	KNTC1 (ENSCJAG00000020449) #35	RSRC2 (ENSCJAG00000020419) #36	ZCCHC8 (ENSCJAG00000020409) #37
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00910000146904	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030.f #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349.hb #32	ENSGT00390000007883 #35	ENSGT00730000111142.a.a #36	ENSGT00390000011475 #37	ENSGT00940000155122.a	ENSGT00940000155165
Bolivian squirrel monkey	MODERN SPECIES	90														KMT5A (ENSSBOG00000032983) #20	SBNO1 (ENSSBOG00000015422) #21	CDK2AP1 (ENSSBOG00000022451) #22	MTRFR (ENSSBOG00000026629) #23	MPHOSPH9 (ENSSBOG00000031113) #24	PITPNM2 (ENSSBOG00000028354) #25	ARL6IP4 (ENSSBOG00000033244) #26	OGFOD2 (ENSSBOG00000015231) #27	ABCB9 (ENSSBOG00000025362) #28	VPS37B (ENSSBOG00000024508) #29	HIP1R (ENSSBOG00000030180) #30	CCDC62 (ENSSBOG00000027256) #31	ENSSBOG00000032425 #32	ENSSBOG00000018984	KNTC1 (ENSSBOG00000025862) #35	ENSSBOG00000023726 #36	ZCCHC8 (ENSSBOG00000032964) #37	CLIP1 (ENSSBOG00000021686)
Capuchin	MODERN SPECIES	169	ENSCCAG00000032606	DNAH10 (ENSCCAG00000031304) #10	ATP6V0A2 (ENSCCAG00000028342) #11	TCTN2 (ENSCCAG00000017802) #12	GTF2H3 (ENSCCAG00000032941) #13	EIF2B1 (ENSCCAG00000034115) #14	DDX55 (ENSCCAG00000021652) #15	TMED2 (ENSCCAG00000019588) #16	RILPL1 (ENSCCAG00000033275) #17	ENSCCAG00000017043	SNRNP35 (ENSCCAG00000001685) #18	RILPL2 (ENSCCAG00000025713) #19	KMT5A (ENSCCAG00000033649) #20	SBNO1 (ENSCCAG00000035316) #21	ENSCCAG00000036671	CDK2AP1 (ENSCCAG00000023979) #22	MPHOSPH9 (ENSCCAG00000028545) #24	PITPNM2 (ENSCCAG00000034095) #25	ARL6IP4 (ENSCCAG00000037235) #26	OGFOD2 (ENSCCAG00000020207) #27	ENSCCAG00000020553	ABCB9 (ENSCCAG00000027976) #28	VPS37B (ENSCCAG00000035653) #29	HIP1R (ENSCCAG00000026938) #30	ENSCCAG00000000389	CCDC62 (ENSCCAG00000023302) #31	ENSCCAG00000036113 #32	ENSCCAG00000024604	KNTC1 (ENSCCAG00000021319) #35	RSRC2 (ENSCCAG00000019182) #36	ZCCHC8 (ENSCCAG00000028625) #37
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	6836															SBNO1 (ENSTSYG00000012749) #21	CDK2AP1 (ENSTSYG00000036326) #22	NAPG (ENSTSYG00000010952)	APCDD1 (ENSTSYG00000006593)	ENSTSYG00000037303	VAPA (ENSTSYG00000009423)
Tarsier	MODERN SPECIES	1013																ENSTSYG00000005787 #22
Strepsirrhini	ANCESTRAL SPECIES	19	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Bushbaby	MODERN SPECIES	214	RFLNA (ENSOGAG00000000989) #7	ZNF664 (ENSOGAG00000008743) #8	CCDC92 (ENSOGAG00000008742) #9	ENSOGAG00000008734 #10	ENSOGAG00000008729 #10	ATP6V0A2 (ENSOGAG00000009211) #11	GTF2H3 (ENSOGAG00000009203) #13	EIF2B1 (ENSOGAG00000009199) #14	DDX55 (ENSOGAG00000009195) #15	TMED2 (ENSOGAG00000009192) #16	RILPL1 (ENSOGAG00000009186) #17	SNRNP35 (ENSOGAG00000011301) #18	RILPL2 (ENSOGAG00000011300) #19	KMT5A (ENSOGAG00000031093) #20	ENSOGAG00000010781 #21	CDK2AP1 (ENSOGAG00000024823) #22	MTRFR (ENSOGAG00000010778) #23	MPHOSPH9 (ENSOGAG00000033072) #24	PITPNM2 (ENSOGAG00000015956) #25	ARL6IP4 (ENSOGAG00000015951) #26	OGFOD2 (ENSOGAG00000015948) #27	ABCB9 (ENSOGAG00000015944) #28	VPS37B (ENSOGAG00000013709) #29	HIP1R (ENSOGAG00000013702) #30	ENSOGAG00000026690 #31	DENR (ENSOGAG00000012426) #32	HCAR1 (ENSOGAG00000012424) #33	ENSOGAG00000012421 #34	ENSOGAG00000001268 #35	RSRC2 (ENSOGAG00000015906) #36	ZCCHC8 (ENSOGAG00000015900) #37
Lemuriformes	ANCESTRAL SPECIES	20	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030.l #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Mouse lemur	MODERN SPECIES	13	RFLNA (ENSMICG00000047134) #7	ZNF664 (ENSMICG00000044061) #8	CCDC92 (ENSMICG00000006578) #9	DNAH10 (ENSMICG00000006529) #10	ATP6V0A2 (ENSMICG00000006505) #11	TCTN2 (ENSMICG00000006495) #12	GTF2H3 (ENSMICG00000006482) #13	EIF2B1 (ENSMICG00000006480) #14	DDX55 (ENSMICG00000006477) #15	TMED2 (ENSMICG00000038482) #16	RILPL1 (ENSMICG00000030068) #17	SNRNP35 (ENSMICG00000026512) #18	RILPL2 (ENSMICG00000047555) #19	KMT5A (ENSMICG00000006595) #20	SBNO1 (ENSMICG00000006573) #21	CDK2AP1 (ENSMICG00000033828) #22	MTRFR (ENSMICG00000037138) #23	MPHOSPH9 (ENSMICG00000006531) #24	PITPNM2 (ENSMICG00000006516) #25	ARL6IP4 (ENSMICG00000032330) #26	OGFOD2 (ENSMICG00000006497) #27	ABCB9 (ENSMICG00000006491) #28	VPS37B (ENSMICG00000028172) #29	HIP1R (ENSMICG00000006476) #30	CCDC62 (ENSMICG00000038255) #31	DENR (ENSMICG00000046263) #32	KNTC1 (ENSMICG00000000331) #35	ENSMICG00000027909	RSRC2 (ENSMICG00000013509) #36	ZCCHC8 (ENSMICG00000013486) #37	CLIP1 (ENSMICG00000001175)
Lemuriformes_a	ANCESTRAL SPECIES	44	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030.l #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Coquerels sifaka	MODERN SPECIES	933	RFLNA (ENSPCOG00000024747) #7	ZNF664 (ENSPCOG00000026631) #8	CCDC92 (ENSPCOG00000020887) #9	DNAH10 (ENSPCOG00000016184) #10	ATP6V0A2 (ENSPCOG00000025711) #11	TCTN2 (ENSPCOG00000019079) #12	ENSPCOG00000019968 #13	EIF2B1 (ENSPCOG00000021465) #14	DDX55 (ENSPCOG00000011189) #15	TMED2 (ENSPCOG00000013795) #16	RILPL1 (ENSPCOG00000017010) #17	SNRNP35 (ENSPCOG00000009946) #18	RILPL2 (ENSPCOG00000025528) #19	ENSPCOG00000014670 #20	SBNO1 (ENSPCOG00000024277) #21	CDK2AP1 (ENSPCOG00000024512) #22	MTRFR (ENSPCOG00000021574) #23	MPHOSPH9 (ENSPCOG00000018729) #24	ENSPCOG00000002729	PITPNM2 (ENSPCOG00000023413) #25	ARL6IP4 (ENSPCOG00000018734) #26	OGFOD2 (ENSPCOG00000007776) #27	ABCB9 (ENSPCOG00000024359) #28	VPS37B (ENSPCOG00000012920) #29	HIP1R (ENSPCOG00000015257) #30	CCDC62 (ENSPCOG00000015299) #31	DENR (ENSPCOG00000015933) #32	KNTC1 (ENSPCOG00000004063) #35	ENSPCOG00000028507 #36	ZCCHC8 (ENSPCOG00000014512) #37	ENSPCOG00000018044
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	531										TMED2 (ENSPSMG00000019956) #16	RILPL1 (ENSPSMG00000019939) #17	SNRNP35 (ENSPSMG00000019884) #18	RILPL2 (ENSPSMG00000019874) #19	KMT5A (ENSPSMG00000019856) #20	SBNO1 (ENSPSMG00000019829) #21	ENSPSMG00000019738 #22	MTRFR (ENSPSMG00000019727) #23	MPHOSPH9 (ENSPSMG00000019711) #24	PITPNM2 (ENSPSMG00000019641) #25	ARL6IP4 (ENSPSMG00000019581) #26	OGFOD2 (ENSPSMG00000019548) #27	ABCB9 (ENSPSMG00000019457) #28	VPS37B (ENSPSMG00000019372) #29	HIP1R (ENSPSMG00000019338) #30	CCDC62 (ENSPSMG00000019280) #31	ENSPSMG00000019251 #32	HCAR1 (ENSPSMG00000019235) #33	ENSPSMG00000019231 #34	KNTC1 (ENSPSMG00000019137) #35	RSRC2 (ENSPSMG00000018953) #36	ZCCHC8 (ENSPSMG00000018911) #37
Greater bamboo lemur	MODERN SPECIES	1125													ENSPSMG00000016296	ENSPSMG00000016287	ENSPSMG00000016280	ENSPSMG00000016273 #22	ENSPSMG00000016265	ENSPSMG00000016256	ENSPSMG00000016252	ENSPSMG00000016244	OR2AK2 (ENSPSMG00000016230)	ENSPSMG00000016220	OR2W3 (ENSPSMG00000016212)
Euarchontoglires_A	ANCESTRAL SPECIES	18	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35
Glires	ANCESTRAL SPECIES	19	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35
Lagomorpha	ANCESTRAL SPECIES	165		ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24
Pika	MODERN SPECIES	1089											ENSOPRG00000011137 #17	SNRNP35 (ENSOPRG00000011119) #18	RILPL2 (ENSOPRG00000011112) #19	KMT5A (ENSOPRG00000011099) #20	SBNO1 (ENSOPRG00000011054) #21	CDK2AP1 (ENSOPRG00000011036) #22	MTRFR (ENSOPRG00000011029) #23	ENSOPRG00000010998 #24
Rodentia	ANCESTRAL SPECIES	20	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00940000167638.b
Rodentia_B	ANCESTRAL SPECIES	22	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Kangaroo rat	MODERN SPECIES	385	Scarb1 (ENSDORG00000013878)	Ncor2 (ENSDORG00000005764)	Zfp664 (ENSDORG00000027434) #8	Ccdc92 (ENSDORG00000004635) #9	Dnah10 (ENSDORG00000004630) #10	Atp6v0a2 (ENSDORG00000003047) #11	Gtf2h3 (ENSDORG00000003042) #13	Eif2b1 (ENSDORG00000003040) #14	Ddx55 (ENSDORG00000003038) #15	ENSDORG00000003035 #16	Rilpl1 (ENSDORG00000001860) #17	Snrnp35 (ENSDORG00000001859) #18	Rilpl2 (ENSDORG00000001858) #19	ENSDORG00000001856 #20	Sbno1 (ENSDORG00000015261) #21	ENSDORG00000026768 #22	Mtrfr (ENSDORG00000026069) #23	Mphosph9 (ENSDORG00000003499) #24	ENSDORG00000029116	Pitpnm2 (ENSDORG00000014639) #25	Arl6ip4 (ENSDORG00000023896) #26	Ogfod2 (ENSDORG00000014638) #27	Abcb9 (ENSDORG00000006254) #28	Vps37b (ENSDORG00000002377) #29	Hip1r (ENSDORG00000002372) #30	Ccdc62 (ENSDORG00000007093) #31	Denr (ENSDORG00000007092) #32	Hcar2 (ENSDORG00000013179) #34	Kntc1 (ENSDORG00000016094) #35	Rsrc2 (ENSDORG00000025489) #36	Zcchc8 (ENSDORG00000008756) #37
Myomorpha	ANCESTRAL SPECIES	30	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Muroidea	ANCESTRAL SPECIES	28	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1483											ENSNGAG00000013797	Grb10 (ENSNGAG00000010372)	Ddc (ENSNGAG00000013414)	Fignl1 (ENSNGAG00000018394)	Ikzf1 (ENSNGAG00000014969)	ENSNGAG00000017808 #22	ENSNGAG00000017583	Zpbp (ENSNGAG00000000865)	Vwc2 (ENSNGAG00000019997)	ENSNGAG00000020543	ENSNGAG00000000364
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1065	Zfp664 (ENSNGAG00000010695) #8	ENSNGAG00000012211	Ccdc92 (ENSNGAG00000006915) #9	Dnah10 (ENSNGAG00000016515) #10	Atp6v0a2 (ENSNGAG00000003702) #11	Gtf2h3 (ENSNGAG00000019658) #13	Eif2b1 (ENSNGAG00000002340) #14	Ddx55 (ENSNGAG00000020564) #15	Tmed2 (ENSNGAG00000022831) #16	Rilpl1 (ENSNGAG00000001524) #17	Snrnp35 (ENSNGAG00000010711) #18	ENSNGAG00000014715	Rilpl2 (ENSNGAG00000022595) #19	Kmt5a (ENSNGAG00000001408) #20	Sbno1 (ENSNGAG00000012620) #21	ENSNGAG00000010002 #22	Mtrfr (ENSNGAG00000010625) #23	Mphosph9 (ENSNGAG00000014036) #24	ENSNGAG00000023046 #25	ENSNGAG00000023216 #25	Arl6ip4 (ENSNGAG00000023492) #26	Ogfod2 (ENSNGAG00000023848) #27	Abcb9 (ENSNGAG00000017758) #28	Vps37b (ENSNGAG00000007096) #29	Hip1r (ENSNGAG00000016649) #30	Ccdc62 (ENSNGAG00000006948) #31	Denr (ENSNGAG00000013775) #32	Hcar2 (ENSNGAG00000018990) #34	Kntc1 (ENSNGAG00000001875) #35	Rsrc2 (ENSNGAG00000010991) #36	Zcchc8 (ENSNGAG00000015385) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1001											Abcb7 (ENSNGAG00000011455)	Uprt (ENSNGAG00000017602)	Zdhhc15 (ENSNGAG00000024298)	Pbdc1 (ENSNGAG00000008887)	Magee1 (ENSNGAG00000010920)	ENSNGAG00000011561 #22	Fgf16 (ENSNGAG00000021799)	Atrx (ENSNGAG00000023904)	Magt1 (ENSNGAG00000022711)	ENSNGAG00000012256	ENSNGAG00000023001	ENSNGAG00000014750	Atp7a (ENSNGAG00000012201)	ENSNGAG00000012711	ENSNGAG00000011781	ENSNGAG00000007200	ENSNGAG00000007438	ENSNGAG00000022530	Cysltr1 (ENSNGAG00000010412)	Rtl3 (ENSNGAG00000002851)	Lpar4 (ENSNGAG00000024167)
Muroidea_A	ANCESTRAL SPECIES	21	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Murinae	ANCESTRAL SPECIES	20	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Rat	DUPLICATION
Rat	MODERN SPECIES	12	G4 (ENSRNOG00000039658)	Apom (ENSRNOG00000000850)	Bag6 (ENSRNOG00000000851)	Prrc2a (ENSRNOG00000000852)	Aif1 (ENSRNOG00000000853)	Ncr3 (ENSRNOG00000000854)	Lst1 (ENSRNOG00000000855)	Ltb (ENSRNOG00000070531)	Tnf (ENSRNOG00000070745)	Lta (ENSRNOG00000000838)	Nfkbil1 (ENSRNOG00000000839)	Atp6v1g2 (ENSRNOG00000000840)	Ddx39b (ENSRNOG00000000841)	RT1-A2 (ENSRNOG00000030712)	RT1-CE16 (ENSRNOG00000047706)	ENSRNOG00000064334 #22	AABR07044383.1 (ENSRNOG00000059770)	RT1-A1 (ENSRNOG00000038999)	ENSRNOG00000069480	RT1-CE14 (ENSRNOG00000066181)	RT1-CE15 (ENSRNOG00000065311)	ENSRNOG00000065780	RT1-CE16 (ENSRNOG00000065254)	Pou5f1 (ENSRNOG00000046487)	Tcf19 (ENSRNOG00000058288)	Cchcr1 (ENSRNOG00000050233)	Psors1c2 (ENSRNOG00000048579)	Cdsn (ENSRNOG00000050215)	RGD1562885 (ENSRNOG00000030676)	Mucl3 (ENSRNOG00000042287)	Sfta2 (ENSRNOG00000048987)
Rat	MODERN SPECIES	3	Scarb1 (ENSRNOG00000000981)	Ncor2 (ENSRNOG00000001004)	Rflna (ENSRNOG00000063517) #7	LOC102556092 (ENSRNOG00000064009) #8	Ccdc92 (ENSRNOG00000021691) #9	Dnah10 (ENSRNOG00000052704) #10	Gtf2h3 (ENSRNOG00000001035) #13	Eif2b1 (ENSRNOG00000001039) #14	Ddx55 (ENSRNOG00000001043) #15	Tmed2 (ENSRNOG00000001053) #16	Rilpl1 (ENSRNOG00000001055) #17	Snrnp35 (ENSRNOG00000001060) #18	Rilpl2 (ENSRNOG00000001061) #19	Kmt5a (ENSRNOG00000064318) #20	Sbno1 (ENSRNOG00000001064) #21	Cdk2ap1 (ENSRNOG00000001070) #22	Mtrfr (ENSRNOG00000001073) #23	Mphosph9 (ENSRNOG00000001074) #24	Pitpnm2 (ENSRNOG00000029260) #25	Arl6ip4 (ENSRNOG00000001080) #26	Abcb9 (ENSRNOG00000001082) #28	Vps37b (ENSRNOG00000001086) #29	Hip1r (ENSRNOG00000001091) #30	Ccdc62 (ENSRNOG00000038002) #31	Denr (ENSRNOG00000001106) #32	Hcar1 (ENSRNOG00000026661) #33	Hcar2 (ENSRNOG00000026653) #34	Kntc1 (ENSRNOG00000033658) #35	Rsrc2 (ENSRNOG00000001238) #36	Zcchc8 (ENSRNOG00000001243) #37	LOC100359550 (ENSRNOG00000037978)
Mus	ANCESTRAL SPECIES	17	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00940000167181	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Shrew mouse	MODERN SPECIES	15	Ncor2 (MGP_PahariEiJ_G0024343)	Rflna (MGP_PahariEiJ_G0024342) #7	Zfp664 (MGP_PahariEiJ_G0024341) #8	Ccdc92 (MGP_PahariEiJ_G0024340) #9	Dnah10 (MGP_PahariEiJ_G0024339) #10	Atp6v0a2 (MGP_PahariEiJ_G0024338) #11	Gtf2h3 (MGP_PahariEiJ_G0024337) #13	Eif2b1 (MGP_PahariEiJ_G0024336) #14	Ddx55 (MGP_PahariEiJ_G0024335) #15	MGP_PahariEiJ_G0024334 #16	Rilpl1 (MGP_PahariEiJ_G0024333) #17	Snrnp35 (MGP_PahariEiJ_G0024332) #18	Rilpl2 (MGP_PahariEiJ_G0024331) #19	Kmt5a (MGP_PahariEiJ_G0024330) #20	Sbno1 (MGP_PahariEiJ_G0024329) #21	MGP_PahariEiJ_G0024328 #22	MGP_PahariEiJ_G0024327	Mphosph9 (MGP_PahariEiJ_G0024326) #24	Pitpnm2 (MGP_PahariEiJ_G0024325) #25	Arl6ip4 (MGP_PahariEiJ_G0024324) #26	Ogfod2 (MGP_PahariEiJ_G0024323) #27	Abcb9 (MGP_PahariEiJ_G0024322) #28	Vps37b (MGP_PahariEiJ_G0024321) #29	Hip1r (MGP_PahariEiJ_G0024320) #30	Ccdc62 (MGP_PahariEiJ_G0024319) #31	MGP_PahariEiJ_G0024318	Denr (MGP_PahariEiJ_G0024317) #32	Hcar1 (MGP_PahariEiJ_G0024316) #33	Hcar2 (MGP_PahariEiJ_G0024315) #34	Kntc1 (MGP_PahariEiJ_G0024314) #35	Rsrc2 (MGP_PahariEiJ_G0024313) #36
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000155149.s #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000155149.s #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000155149.s #22
Steppe mouse	MODERN SPECIES	3299	Lad1 (ENSMSIG00000016232)	Tnnt2 (ENSMSIG00000013795)	Pkp1 (ENSMSIG00000013746)	Igfn1 (ENSMSIG00000013674)	ENSMSIG00000013605	Ascl5 (ENSMSIG00000013596)	Cacna1s (ENSMSIG00000013188)	Kif21b (ENSMSIG00000012992)	Mroh3 (ENSMSIG00000012959)	Inava (ENSMSIG00000012900)	ENSMSIG00000012897	Gpr25 (ENSMSIG00000012892)	Camsap2 (ENSMSIG00000012647)	ENSMSIG00000012627	Ddx59 (ENSMSIG00000012596)	ENSMSIG00000012582 #22	Kif14 (ENSMSIG00000012445)	Zfp281 (ENSMSIG00000012430)	ENSMSIG00000012410
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	6	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.t.a #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00940000167181	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Ryukyu mouse	MODERN SPECIES	14	Ncor2 (MGP_CAROLIEiJ_G0027763)	Rflna (MGP_CAROLIEiJ_G0027762) #7	Zfp664 (MGP_CAROLIEiJ_G0027761) #8	Ccdc92 (MGP_CAROLIEiJ_G0027760) #9	Dnah10 (MGP_CAROLIEiJ_G0027759) #10	Atp6v0a2 (MGP_CAROLIEiJ_G0027758) #11	Gtf2h3 (MGP_CAROLIEiJ_G0027757) #13	Eif2b1 (MGP_CAROLIEiJ_G0027756) #14	MGP_CAROLIEiJ_G0027755 #15	MGP_CAROLIEiJ_G0027754	Rilpl1 (MGP_CAROLIEiJ_G0027753) #17	Snrnp35 (MGP_CAROLIEiJ_G0027752) #18	Rilpl2 (MGP_CAROLIEiJ_G0027751) #19	Kmt5a (MGP_CAROLIEiJ_G0027750) #20	Sbno1 (MGP_CAROLIEiJ_G0027749) #21	Cdk2ap1 (MGP_CAROLIEiJ_G0027748) #22	Mtrfr (MGP_CAROLIEiJ_G0027747) #23	Mphosph9 (MGP_CAROLIEiJ_G0027746) #24	Pitpnm2 (MGP_CAROLIEiJ_G0027745) #25	Arl6ip4 (MGP_CAROLIEiJ_G0027744) #26	Ogfod2 (MGP_CAROLIEiJ_G0027743) #27	Abcb9 (MGP_CAROLIEiJ_G0027742) #28	Vps37b (MGP_CAROLIEiJ_G0027741) #29	Hip1r (MGP_CAROLIEiJ_G0027740) #30	Ccdc62 (MGP_CAROLIEiJ_G0027739) #31	MGP_CAROLIEiJ_G0027738	Denr (MGP_CAROLIEiJ_G0027737) #32	Hcar1 (MGP_CAROLIEiJ_G0027736) #33	Hcar2 (MGP_CAROLIEiJ_G0027735) #34	Kntc1 (MGP_CAROLIEiJ_G0027734) #35	Rsrc2 (MGP_CAROLIEiJ_G0027733) #36
Mus_B	ANCESTRAL SPECIES	4	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.hb #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.t.a #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00940000167181	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Mus_C	ANCESTRAL SPECIES	4	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.hb #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.t.a #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00940000167181	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Steppe mouse	MODERN SPECIES	3421	Rflna (ENSMSIG00000007899) #7	Zfp664 (ENSMSIG00000007910) #8	Ccdc92 (ENSMSIG00000007918) #9	Dnah10 (ENSMSIG00000007931) #10	Atp6v0a2 (ENSMSIG00000008492) #11	Tctn2 (ENSMSIG00000008540) #12	Gtf2h3 (ENSMSIG00000008664) #13	Eif2b1 (ENSMSIG00000008711) #14	Ddx55 (ENSMSIG00000008751) #15	Tmed2 (ENSMSIG00000008831) #16	Rilpl1 (ENSMSIG00000008857) #17	Snrnp35 (ENSMSIG00000008882) #18	Rilpl2 (ENSMSIG00000008887) #19	Kmt5a (ENSMSIG00000008903) #20	Sbno1 (ENSMSIG00000008939) #21	Cdk2ap1 (ENSMSIG00000009250) #22	Mtrfr (ENSMSIG00000009298) #23	Mphosph9 (ENSMSIG00000009319) #24	Pitpnm2 (ENSMSIG00000009491) #25	Arl6ip4 (ENSMSIG00000009699) #26	ENSMSIG00000009723 #27	Abcb9 (ENSMSIG00000009784) #28	Vps37b (ENSMSIG00000009807) #29	Hip1r (ENSMSIG00000009828) #30	Ccdc62 (ENSMSIG00000014496) #31	Denr (ENSMSIG00000014624) #32	Hcar1 (ENSMSIG00000014671) #33	Hcar2 (ENSMSIG00000014676) #34	Kntc1 (ENSMSIG00000014685) #35	Rsrc2 (ENSMSIG00000014817) #36	ENSMSIG00000014977
Mouse	MODERN SPECIES	14	Rflna (ENSMUSG00000037962) #7	Zfp664 (ENSMUSG00000079215) #8	Ccdc92 (ENSMUSG00000037979) #9	Dnah10 (ENSMUSG00000038011) #10	Atp6v0a2 (ENSMUSG00000038023) #11	Tctn2 (ENSMUSG00000118662) #12	Gtf2h3 (ENSMUSG00000029387) #13	Eif2b1 (ENSMUSG00000029388) #14	Ddx55 (ENSMUSG00000029389) #15	Tmed2 (ENSMUSG00000029390) #16	Rilpl1 (ENSMUSG00000029392) #17	Snrnp35 (ENSMUSG00000029402) #18	Rilpl2 (ENSMUSG00000029401) #19	Kmt5a (ENSMUSG00000049327) #20	Sbno1 (ENSMUSG00000038095) #21	Cdk2ap1 (ENSMUSG00000029394) #22	Mtrfr (ENSMUSG00000047635) #23	Mphosph9 (ENSMUSG00000038126) #24	Pitpnm2 (ENSMUSG00000029406) #25	Arl6ip4 (ENSMUSG00000029404) #26	Ogfod2 (ENSMUSG00000023707) #27	Abcb9 (ENSMUSG00000029408) #28	Vps37b (ENSMUSG00000066278) #29	Hip1r (ENSMUSG00000000915) #30	Ccdc62 (ENSMUSG00000061882) #31	Denr (ENSMUSG00000023106) #32	Hcar1 (ENSMUSG00000049241) #33	Hcar2 (ENSMUSG00000045502) #34	Kntc1 (ENSMUSG00000029414) #35	Rsrc2 (ENSMUSG00000029422) #36	Zcchc8 (ENSMUSG00000029427) #37
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000155149.t.b #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000155149.t.b #22
Mouse	MODERN SPECIES	2	Btnl9 (ENSMUSG00000040283)	Or2o1 (ENSMUSG00000048378)	Or2t26 (ENSMUSG00000050763)	Or2v2 (ENSMUSG00000047511)	Ifi47 (ENSMUSG00000078920)	Tgtp2 (ENSMUSG00000078921)	9930111J21Rik2 (ENSMUSG00000069892)	Tgtp1 (ENSMUSG00000078922)	Or2v1 (ENSMUSG00000040328)	9930111J21Rik1 (ENSMUSG00000069893)	Psme2b (ENSMUSG00000078153)	Gm12185 (ENSMUSG00000048852)	Gm5431 (ENSMUSG00000058163)	Irgm1 (ENSMUSG00000046879)	Trim7 (ENSMUSG00000040350)	Gm12184 (ENSMUSG00000078154) #22	Trim41 (ENSMUSG00000040365)	Rack1 (ENSMUSG00000020372)	Sgcd (ENSMUSG00000020354)	Timd4 (ENSMUSG00000055546)	Havcr1 (ENSMUSG00000040405)	Timd2 (ENSMUSG00000040413)	Dppa1 (ENSMUSG00000064010)	BC053393 (ENSMUSG00000046974)	Gm12169 (ENSMUSG00000078924)	Havcr2 (ENSMUSG00000020399)	Med7 (ENSMUSG00000020397)	Garin3 (ENSMUSG00000020401)	Itk (ENSMUSG00000020395)	Fndc9 (ENSMUSG00000048721)	Cyfip2 (ENSMUSG00000020340)
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000155149.t.b #22
spretus	MODERN SPECIES	14	Ncor2 (MGP_SPRETEiJ_G0028761)	Rflna (MGP_SPRETEiJ_G0028760) #7	Zfp664 (MGP_SPRETEiJ_G0028759) #8	Ccdc92 (MGP_SPRETEiJ_G0028758) #9	Dnah10 (MGP_SPRETEiJ_G0028757) #10	Atp6v0a2 (MGP_SPRETEiJ_G0028756) #11	Gtf2h3 (MGP_SPRETEiJ_G0028755) #13	Eif2b1 (MGP_SPRETEiJ_G0028754) #14	Ddx55 (MGP_SPRETEiJ_G0028753) #15	MGP_SPRETEiJ_G0028752	Snrnp35 (MGP_SPRETEiJ_G0028751) #18	Rilpl1 (MGP_SPRETEiJ_G0028750) #17	Rilpl2 (MGP_SPRETEiJ_G0028749) #19	Kmt5a (MGP_SPRETEiJ_G0028748) #20	Sbno1 (MGP_SPRETEiJ_G0028747) #21	Gm12184 (MGP_SPRETEiJ_G0028746) #22	Mtrfr (MGP_SPRETEiJ_G0028745) #23	Mphosph9 (MGP_SPRETEiJ_G0028744) #24	Pitpnm2 (MGP_SPRETEiJ_G0028743) #25	Arl6ip4 (MGP_SPRETEiJ_G0028742) #26	Ogfod2 (MGP_SPRETEiJ_G0028741) #27	Abcb9 (MGP_SPRETEiJ_G0028740) #28	Vps37b (MGP_SPRETEiJ_G0028739) #29	Hip1r (MGP_SPRETEiJ_G0028738) #30	Ccdc62 (MGP_SPRETEiJ_G0028737) #31	MGP_SPRETEiJ_G0028736	Denr (MGP_SPRETEiJ_G0028735) #32	Hcar1 (MGP_SPRETEiJ_G0028734) #33	Hcar2 (MGP_SPRETEiJ_G0028733) #34	Kntc1 (MGP_SPRETEiJ_G0028732) #35	Rsrc2 (MGP_SPRETEiJ_G0028731) #36
Steppe mouse	MODERN SPECIES	1948																ENSMSIG00000019414 #22	Atrx (ENSMSIG00000019326)
Cricetidae	ANCESTRAL SPECIES	20	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Cricetidae_B	ANCESTRAL SPECIES	19	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	15	Rflna (ENSPEMG00000014196) #7	Zfp664 (ENSPEMG00000028318) #8	Ccdc92 (ENSPEMG00000025820) #9	Dnah10 (ENSPEMG00000008775) #10	Atp6v0a2 (ENSPEMG00000016304) #11	ENSPEMG00000025026 #12	Gtf2h3 (ENSPEMG00000013990) #13	ENSPEMG00000015117 #14	Ddx55 (ENSPEMG00000018052) #15	ENSPEMG00000019255 #16	Rilpl1 (ENSPEMG00000009424) #17	Snrnp35 (ENSPEMG00000031421) #18	Rilpl2 (ENSPEMG00000028256) #19	Kmt5a (ENSPEMG00000011550) #20	Sbno1 (ENSPEMG00000016087) #21	ENSPEMG00000029445 #22	Mtrfr (ENSPEMG00000030785) #23	Mphosph9 (ENSPEMG00000019208) #24	Pitpnm2 (ENSPEMG00000003921) #25	Arl6ip4 (ENSPEMG00000008921) #26	Ogfod2 (ENSPEMG00000017329) #27	Abcb9 (ENSPEMG00000007244) #28	Vps37b (ENSPEMG00000015436) #29	Hip1r (ENSPEMG00000016833) #30	Ccdc62 (ENSPEMG00000019203) #31	Denr (ENSPEMG00000006521) #32	Hcar1 (ENSPEMG00000019055) #33	Hcar2 (ENSPEMG00000017268) #34	Kntc1 (ENSPEMG00000017028) #35	Rsrc2 (ENSPEMG00000001702) #36	Zcchc8 (ENSPEMG00000007962) #37
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	7	Samd5 (ENSPEMG00000028929)	Sash1 (ENSPEMG00000013982)	Ust (ENSPEMG00000014685)	Tab2 (ENSPEMG00000011369)	Zc3h12d (ENSPEMG00000010962)	Ppil4 (ENSPEMG00000010912)	Ginm1 (ENSPEMG00000018350)	Katna1 (ENSPEMG00000020852)	Lats1 (ENSPEMG00000021147)	Nup43 (ENSPEMG00000022692)	Pcmt1 (ENSPEMG00000027593)	Lrp11 (ENSPEMG00000000669)	ENSPEMG00000026371	ENSPEMG00000026324 #22	ENSPEMG00000027039	ENSPEMG00000025014 #22	ENSPEMG00000028469	ENSPEMG00000029355	ENSPEMG00000031117	Ppp1r14c (ENSPEMG00000026419)	Iyd (ENSPEMG00000009998)	Plekhg1 (ENSPEMG00000003381)	Mthfd1l (ENSPEMG00000012428)	ENSPEMG00000028722	Zbtb2 (ENSPEMG00000028248)	Rmnd1 (ENSPEMG00000014544)	Armt1 (ENSPEMG00000027664)	Ccdc170 (ENSPEMG00000018858)	ENSPEMG00000028412	Esr1 (ENSPEMG00000012747)	ENSPEMG00000000704
Northern American deer mouse	MODERN SPECIES	7	ENSPEMG00000028412	Ccdc170 (ENSPEMG00000018858)	Armt1 (ENSPEMG00000027664)	Rmnd1 (ENSPEMG00000014544)	Zbtb2 (ENSPEMG00000028248)	ENSPEMG00000028722	Mthfd1l (ENSPEMG00000012428)	Plekhg1 (ENSPEMG00000003381)	Iyd (ENSPEMG00000009998)	Ppp1r14c (ENSPEMG00000026419)	ENSPEMG00000031117	ENSPEMG00000029355	ENSPEMG00000028469	ENSPEMG00000025014 #22	ENSPEMG00000027039	ENSPEMG00000026324 #22	ENSPEMG00000026371	Lrp11 (ENSPEMG00000000669)	Pcmt1 (ENSPEMG00000027593)	Nup43 (ENSPEMG00000022692)	Lats1 (ENSPEMG00000021147)	Katna1 (ENSPEMG00000020852)	Ginm1 (ENSPEMG00000018350)	Ppil4 (ENSPEMG00000010912)	Zc3h12d (ENSPEMG00000010962)	Tab2 (ENSPEMG00000011369)	Ust (ENSPEMG00000014685)	Sash1 (ENSPEMG00000013982)	Samd5 (ENSPEMG00000028929)	Stxbp5 (ENSPEMG00000020701)	Adgb (ENSPEMG00000007133)
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	7	Rflna (ENSMOCG00000015532) #7	Zfp664 (ENSMOCG00000001606) #8	Ccdc92 (ENSMOCG00000009569) #9	Dnah10 (ENSMOCG00000012111) #10	Atp6v0a2 (ENSMOCG00000021235) #11	Tctn2 (ENSMOCG00000002037) #12	Gtf2h3 (ENSMOCG00000020654) #13	Eif2b1 (ENSMOCG00000012941) #14	Ddx55 (ENSMOCG00000021289) #15	Tmed2 (ENSMOCG00000016243) #16	Rilpl1 (ENSMOCG00000021018) #17	Snrnp35 (ENSMOCG00000000548) #18	Rilpl2 (ENSMOCG00000005279) #19	Kmt5a (ENSMOCG00000020223) #20	Sbno1 (ENSMOCG00000009390) #21	ENSMOCG00000021650 #22	Mtrfr (ENSMOCG00000017477) #23	Mphosph9 (ENSMOCG00000002588) #24	ENSMOCG00000009476	ENSMOCG00000019396 #25	Arl6ip4 (ENSMOCG00000001258) #26	Ogfod2 (ENSMOCG00000007276) #27	Abcb9 (ENSMOCG00000017889) #28	Vps37b (ENSMOCG00000022272) #29	Hip1r (ENSMOCG00000003817) #30	Ccdc62 (ENSMOCG00000009997) #31	Denr (ENSMOCG00000019231) #32	Hcar2 (ENSMOCG00000002700) #34	Kntc1 (ENSMOCG00000004534) #35	Rsrc2 (ENSMOCG00000020828) #36	ENSMOCG00000021891 #37
Prairie vole	MODERN SPECIES	97										Tubgcp5 (ENSMOCG00000013811)	Siglech (ENSMOCG00000000862)	Luzp2 (ENSMOCG00000008924)	ENSMOCG00000021232	ENSMOCG00000016813	ENSMOCG00000014546	ENSMOCG00000006148 #22	ENSMOCG00000001795	ENSMOCG00000003394	Siglecf (ENSMOCG00000016848)	Siglecg (ENSMOCG00000008279)	Gm38999 (ENSMOCG00000011273)	Lim2 (ENSMOCG00000013148)	Nkg7 (ENSMOCG00000007727)	Cldnd2 (ENSMOCG00000022596)	Etfb (ENSMOCG00000021177)	Vsig10l (ENSMOCG00000017203)	Iglon5 (ENSMOCG00000014619)	4931406B18Rik (ENSMOCG00000013427)	ENSMOCG00000007791	ENSMOCG00000002967	ENSMOCG00000019376
Cricetinae	ANCESTRAL SPECIES	27	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	130	Rflna (ENSCGRG00001015822) #7	Zfp664 (ENSCGRG00001002310) #8	Ccdc92 (ENSCGRG00001010246) #9	Dnah10 (ENSCGRG00001004884) #10	Atp6v0a2 (ENSCGRG00001014794) #11	Tctn2 (ENSCGRG00001016335) #12	Gtf2h3 (ENSCGRG00001017537) #13	Eif2b1 (ENSCGRG00001022107) #14	Ddx55 (ENSCGRG00001001652) #15	Tmed2 (ENSCGRG00001013257) #16	Rilpl1 (ENSCGRG00001022398) #17	Snrnp35 (ENSCGRG00001012630) #18	Rilpl2 (ENSCGRG00001009115) #19	Kmt5a (ENSCGRG00001021783) #20	Sbno1 (ENSCGRG00001017470) #21	ENSCGRG00001023639 #22	Mtrfr (ENSCGRG00001013424) #23	Mphosph9 (ENSCGRG00001018660) #24	Pitpnm2 (ENSCGRG00001013626) #25	Arl6ip4 (ENSCGRG00001024174) #26	Ogfod2 (ENSCGRG00001011611) #27	Abcb9 (ENSCGRG00001019191) #28	Vps37b (ENSCGRG00001007088) #29	Hip1r (ENSCGRG00001018939) #30	Ccdc62 (ENSCGRG00001009498) #31	Denr (ENSCGRG00001022427) #32	Hcar1 (ENSCGRG00001004032) #33	Hcar2 (ENSCGRG00001004472) #34	Kntc1 (ENSCGRG00001012679) #35	Rsrc2 (ENSCGRG00001018550) #36	Zcchc8 (ENSCGRG00001023706) #37
Chinese hamster chok1gshd	MODERN SPECIES	2												ENSCGRG00001022667	ENSCGRG00001021716	Ferd3l (ENSCGRG00001003018)	Twist1 (ENSCGRG00001010741)	ENSCGRG00001014414 #22	ENSCGRG00001016294	Hdac9 (ENSCGRG00001012600)	Prps1l1 (ENSCGRG00001011587)	Snx13 (ENSCGRG00001000684)	ENSCGRG00001007669	Ahr (ENSCGRG00001005179)	Agr3 (ENSCGRG00001002325)	Agr2 (ENSCGRG00001001104)	Tspan13 (ENSCGRG00001023940)	ENSCGRG00001013113	Ankmy2 (ENSCGRG00001009172)	ENSCGRG00001020084	Sostdc1 (ENSCGRG00001011682)	Crppa (ENSCGRG00001009392)	Meox2 (ENSCGRG00001005953)
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	718	Ncor2 (ENSMAUG00000013606)	Rflna (ENSMAUG00000000880) #7	Zfp664 (ENSMAUG00000014464) #8	Ccdc92 (ENSMAUG00000012168) #9	Dnah10 (ENSMAUG00000014019) #10	ENSMAUG00000001507 ##11	ENSMAUG00000019849 #12	Gtf2h3 (ENSMAUG00000013023) #13	Eif2b1 (ENSMAUG00000019366) #14	Ddx55 (ENSMAUG00000020054) #15	Tmed2 (ENSMAUG00000021351) #16	Rilpl1 (ENSMAUG00000001361) #17	Rilpl2 (ENSMAUG00000017062) #19	Kmt5a (ENSMAUG00000012247) #20	ENSMAUG00000004834 #21	Cdk2ap1 (ENSMAUG00000014434) #22	Mtrfr (ENSMAUG00000010304) #23	Mphosph9 (ENSMAUG00000015087) #24	ENSMAUG00000013706 #25	ENSMAUG00000003040 #25	Arl6ip4 (ENSMAUG00000018929) #26	Ogfod2 (ENSMAUG00000021428) #27	ENSMAUG00000020424 #28	Vps37b (ENSMAUG00000015445) #29	Hip1r (ENSMAUG00000021398) #30	Ccdc62 (ENSMAUG00000006527) #31	Denr (ENSMAUG00000020940) #32	Hcar1 (ENSMAUG00000008871) #33	Kntc1 (ENSMAUG00000013693) #35	ENSMAUG00000008921 #36	Zcchc8 (ENSMAUG00000018909) #37
Golden Hamster	MODERN SPECIES	627	Sh3bp5l (ENSMAUG00000009441)	Lypd8 (ENSMAUG00000021714)	Lypd9 (ENSMAUG00000021917)	Or2z2 (ENSMAUG00000010493)	ENSMAUG00000010479	Or2av9 (ENSMAUG00000020712)	ENSMAUG00000020684	Trim58 (ENSMAUG00000020919)	ENSMAUG00000013852	ENSMAUG00000010641	Fam183b (ENSMAUG00000021857)	ENSMAUG00000002837	ENSMAUG00000002461	Zfp39 (ENSMAUG00000001536)	Btnl10 (ENSMAUG00000021399)	ENSMAUG00000020727 #22	ENSMAUG00000021471	H2bc27 (ENSMAUG00000010540)	H2bc26-ps (ENSMAUG00000010794)	H2ac25 (ENSMAUG00000010628)	ENSMAUG00000010470	H3f4 (ENSMAUG00000010700)	Trim17 (ENSMAUG00000004817)	Trim11 (ENSMAUG00000001510)	Obscn (ENSMAUG00000022279)	Iba57 (ENSMAUG00000020575)	Gjc2 (ENSMAUG00000020150)	Guk1 (ENSMAUG00000022283)	2310033P09Rik (ENSMAUG00000019958)	ENSMAUG00000022253	Wnt3a (ENSMAUG00000021475)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	156	Rflna (ENSJJAG00000011283) #7	Ccdc92 (ENSJJAG00000010942) #9	Dnah10 (ENSJJAG00000001230) #10	ENSJJAG00000021737 #11	ENSJJAG00000021604 #11	ENSJJAG00000021481	Gtf2h3 (ENSJJAG00000014796) #13	Eif2b1 (ENSJJAG00000013912) #14	Ddx55 (ENSJJAG00000013401) #15	Tmed2 (ENSJJAG00000013149) #16	Rilpl1 (ENSJJAG00000012715) #17	Snrnp35 (ENSJJAG00000013421) #18	Rilpl2 (ENSJJAG00000012602) #19	ENSJJAG00000011872 #20	Sbno1 (ENSJJAG00000001741) #21	ENSJJAG00000023534 #22	Mtrfr (ENSJJAG00000023360) #23	Mphosph9 (ENSJJAG00000023028) #24	ENSJJAG00000022006 #25	ENSJJAG00000021506 #25	Arl6ip4 (ENSJJAG00000019114) #26	Ogfod2 (ENSJJAG00000016546) #27	Abcb9 (ENSJJAG00000015701) #28	Vps37b (ENSJJAG00000015224) #29	Hip1r (ENSJJAG00000000871) #30	Ccdc62 (ENSJJAG00000016376) #31	ENSJJAG00000013822 #32	ENSJJAG00000013487	Hcar1 (ENSJJAG00000012677) #33	ENSJJAG00000012309	ENSJJAG00000020455
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	77	Vamp8 (ENSJJAG00000023575)	Vamp5 (ENSJJAG00000021713)	ENSJJAG00000012435	Tmem150a (ENSJJAG00000015485)	Sftpb (ENSJJAG00000020339)	Atoh8 (ENSJJAG00000003684)	St3gal5 (ENSJJAG00000012802)	Polr1a (ENSJJAG00000013113)	ENSJJAG00000012431	Immt (ENSJJAG00000015348)	Reep1 (ENSJJAG00000021695)	Kdm3a (ENSJJAG00000022464)	ENSJJAG00000016934	ENSJJAG00000004517	Rnf103 (ENSJJAG00000013104)	ENSJJAG00000002281 #22	Rmnd5a (ENSJJAG00000023067)	ENSJJAG00000017252	ENSJJAG00000016765	Fabp1 (ENSJJAG00000024112)	Thnsl2 (ENSJJAG00000023427)	Foxi3 (ENSJJAG00000018749)	ENSJJAG00000004735	Tex37 (ENSJJAG00000016318)	Eif2ak3 (ENSJJAG00000022164)	Rpia (ENSJJAG00000012967)	ENSJJAG00000020780	ENSJJAG00000018068
Lesser Egyptian jerboa	MODERN SPECIES	47										Kcnab1 (ENSJJAG00000018614)	Ssr3 (ENSJJAG00000017278)	Tiparp (ENSJJAG00000014369)	ENSJJAG00000003128	ENSJJAG00000016465	ENSJJAG00000017620	ENSJJAG00000021019 #22	Ccnl1 (ENSJJAG00000023702)	ENSJJAG00000011566	Ptx3 (ENSJJAG00000022554)	Veph1 (ENSJJAG00000014528)	ENSJJAG00000016473	ENSJJAG00000014616	Shox2 (ENSJJAG00000014041)	ENSJJAG00000013277	Rsrc1 (ENSJJAG00000013815)	Mlf1 (ENSJJAG00000016680)	Lxn (ENSJJAG00000013889)	Gfm1 (ENSJJAG00000016447)	Rarres1 (ENSJJAG00000020808)	Mfsd1 (ENSJJAG00000018648)	Iqcj (ENSJJAG00000011023)
Lesser Egyptian jerboa	MODERN SPECIES	81	ENSJJAG00000007203	Ephb6 (ENSJJAG00000015598)	Trpv6 (ENSJJAG00000010273)	Trpv5 (ENSJJAG00000020226)	Tas2r144 (ENSJJAG00000017432)	ENSJJAG00000012066	Tmem139 (ENSJJAG00000014062)	Casp2 (ENSJJAG00000008256)	Zyx (ENSJJAG00000016066)	Epha1 (ENSJJAG00000021813)	ENSJJAG00000010770	Tcaf1 (ENSJJAG00000020805)	Or6b1 (ENSJJAG00000016325)	Nobox (ENSJJAG00000017542)	ENSJJAG00000002419	ENSJJAG00000005242 #22	ENSJJAG00000024312	ENSJJAG00000003559	Ezh2 (ENSJJAG00000014722)
Lesser Egyptian jerboa	MODERN SPECIES	53	ENSJJAG00000015669	ENSJJAG00000004002	Slc9a6 (ENSJJAG00000014615)	Fhl1 (ENSJJAG00000022369)	Adgrg4 (ENSJJAG00000009866)	Brs3 (ENSJJAG00000017913)	ENSJJAG00000014597	Cd40lg (ENSJJAG00000022579)	ENSJJAG00000010302	ENSJJAG00000011211	Rbmx (ENSJJAG00000023855)	ENSJJAG00000013266	Gpr101 (ENSJJAG00000022761)	Zic3 (ENSJJAG00000022714)	ENSJJAG00000020542	ENSJJAG00000010694 #22	Magea13 (ENSJJAG00000010090)	Fgf13 (ENSJJAG00000016169)	ENSJJAG00000018813	ENSJJAG00000010816	F9 (ENSJJAG00000023266)	Mcf2 (ENSJJAG00000018143)	Atp11c (ENSJJAG00000005439)	ENSJJAG00000000576	Sox3 (ENSJJAG00000012521)	Ldoc1 (ENSJJAG00000010596)	Slitrk4 (ENSJJAG00000014216)	ENSJJAG00000022526	ENSJJAG00000011735	Fam78a (ENSJJAG00000010847)	Plpp7 (ENSJJAG00000023043)
Lesser Egyptian jerboa	MODERN SPECIES	220	Tubb5 (ENSJJAG00000024145)	Nrm (ENSJJAG00000024167)	Ppp1r18 (ENSJJAG00000024185)	Dhx16 (ENSJJAG00000000186)	ENSJJAG00000000398	Atat1 (ENSJJAG00000000728)	Mrps18b (ENSJJAG00000003794)	Ppp1r10 (ENSJJAG00000006676)	ENSJJAG00000010508	Prr3 (ENSJJAG00000010607)	Gnl1 (ENSJJAG00000010831)	Rpp21 (ENSJJAG00000011176)	Trim39 (ENSJJAG00000020240)	Trim26 (ENSJJAG00000020786)	Trim10 (ENSJJAG00000000052)	ENSJJAG00000000537 #22	Rnf39 (ENSJJAG00000001427)	Mog (ENSJJAG00000002510)	Gabbr1 (ENSJJAG00000010670)	ENSJJAG00000013540	Or14j1 (ENSJJAG00000012525)	Neu1 (ENSJJAG00000015681)	Slc44a4 (ENSJJAG00000017469)	Ehmt2 (ENSJJAG00000011038)	Cfb (ENSJJAG00000020383)	Nelfe (ENSJJAG00000014005)	ENSJJAG00000015952	Dxo (ENSJJAG00000016118)	Stk19 (ENSJJAG00000016628)	C4b (ENSJJAG00000019955)	Tnxb (ENSJJAG00000011509)
Rodentia_A	ANCESTRAL SPECIES	19	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00940000167638.b	ENSGT00730000111142 #36
Hystricomorpha	ANCESTRAL SPECIES		ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00940000167638.b	ENSGT00730000111142 #36
Naked mole-rat female	MODERN SPECIES	15	RFLNA (ENSHGLG00000038579) #7	ZNF664 (ENSHGLG00000012426) #8	CCDC92 (ENSHGLG00000011222) #9	DNAH10 (ENSHGLG00000011790) #10	ENSHGLG00000016982 #11	TCTN2 (ENSHGLG00000035009) #12	ENSHGLG00000014581 #13	EIF2B1 (ENSHGLG00000014240) #14	DDX55 (ENSHGLG00000019202) #15	ENSHGLG00000019458 #16	RILPL1 (ENSHGLG00000019036) #17	SNRNP35 (ENSHGLG00000017961) #18	RILPL2 (ENSHGLG00000017942) #19	KMT5A (ENSHGLG00000012225) #20	ENSHGLG00000014165 #21	ENSHGLG00000012796 #22	MTRFR (ENSHGLG00000032004) #23	MPHOSPH9 (ENSHGLG00000012543) #24	ENSHGLG00000034267	PITPNM2 (ENSHGLG00000012008) #25	ARL6IP4 (ENSHGLG00000011726) #26	OGFOD2 (ENSHGLG00000033488) #27	ABCB9 (ENSHGLG00000013347) #28	VPS37B (ENSHGLG00000047038) #29	HIP1R (ENSHGLG00000011541) #30	CCDC62 (ENSHGLG00000010989) #31	DENR (ENSHGLG00000009606) #32	HCAR1 (ENSHGLG00000021171) #33	ENSHGLG00000034844 #34	KNTC1 (ENSHGLG00000009716) #35	RSRC2 (ENSHGLG00000012470) #36
Hystricomorpha_a	ANCESTRAL SPECIES	49	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00940000167638.b	ENSGT00730000111142 #36
Guinea pig	MODERN SPECIES	115		ZNF664 (ENSCPOG00000038882) #8	CCDC92 (ENSCPOG00000032113) #9	DNAH10 (ENSCPOG00000013914) #10	ATP6V0A2 (ENSCPOG00000001106) #11	TCTN2 (ENSCPOG00000010033) #12	GTF2H3 (ENSCPOG00000010029) #13	EIF2B1 (ENSCPOG00000038744) #14	DDX55 (ENSCPOG00000010015) #15	TMED2 (ENSCPOG00000003444) #16	ENSCPOG00000002549 #17	SNRNP35 (ENSCPOG00000002548) #18	RILPL2 (ENSCPOG00000034494) #19	KMT5A (ENSCPOG00000037534) #20	SBNO1 (ENSCPOG00000008109) #21	CDK2AP1 (ENSCPOG00000038652) #22	MTRFR (ENSCPOG00000007583) #23	MPHOSPH9 (ENSCPOG00000011686) #24	PITPNM2 (ENSCPOG00000000989) #25	ARL6IP4 (ENSCPOG00000031539) #26	OGFOD2 (ENSCPOG00000004572) #27	ABCB9 (ENSCPOG00000022172) #28	VPS37B (ENSCPOG00000034465) #29	HIP1R (ENSCPOG00000007153) #30	CCDC62 (ENSCPOG00000021876) #31	DENR (ENSCPOG00000031356) #32	HCAR1 (ENSCPOG00000021492) #33	ENSCPOG00000002211 #34	KNTC1 (ENSCPOG00000001426) #35	RSRC2 (ENSCPOG00000001421) #36	ZCCHC8 (ENSCPOG00000014385) #37
Hystricomorpha_b	ANCESTRAL SPECIES	51	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00940000167638.b	ENSGT00730000111142 #36
Long-tailed chinchilla	MODERN SPECIES	189	RFLNA (ENSCLAG00000012361) #7	ZNF664 (ENSCLAG00000016755) #8	CCDC92 (ENSCLAG00000008502) #9	DNAH10 (ENSCLAG00000009418) #10	ATP6V0A2 (ENSCLAG00000013607) #11	TCTN2 (ENSCLAG00000009562) #12	GTF2H3 (ENSCLAG00000009518) #13	EIF2B1 (ENSCLAG00000014615) #14	DDX55 (ENSCLAG00000011203) #15	TMED2 (ENSCLAG00000008986) #16	RILPL1 (ENSCLAG00000008103) #17	SNRNP35 (ENSCLAG00000010232) #18	RILPL2 (ENSCLAG00000008782) #19	KMT5A (ENSCLAG00000015060) #20	SBNO1 (ENSCLAG00000008995) #21	CDK2AP1 (ENSCLAG00000013221) #22	MTRFR (ENSCLAG00000014329) #23	MPHOSPH9 (ENSCLAG00000010227) #24	PITPNM2 (ENSCLAG00000009240) #25	ARL6IP4 (ENSCLAG00000008050) #26	OGFOD2 (ENSCLAG00000011692) #27	ABCB9 (ENSCLAG00000015707) #28	VPS37B (ENSCLAG00000014807) #29	HIP1R (ENSCLAG00000009670) #30	CCDC62 (ENSCLAG00000012971) #31	DENR (ENSCLAG00000014586) #32	HCAR1 (ENSCLAG00000012511) #33	ENSCLAG00000017988 #34	KNTC1 (ENSCLAG00000012600) #35	RSRC2 (ENSCLAG00000015089) #36	ENSCLAG00000015358 #37
Degu	MODERN SPECIES	117	AACS (ENSODEG00000008915)	DHX37 (ENSODEG00000009929)	ENSODEG00000019559	NCOR2 (ENSODEG00000009536)	CCDC92 (ENSODEG00000008834) #9	DNAH10 (ENSODEG00000009996) #10	ATP6V0A2 (ENSODEG00000009400) #11	ENSODEG00000010094 #13	ENSODEG00000010222 #14	ENSODEG00000009632 #15	ENSODEG00000010829 #16	RILPL1 (ENSODEG00000010907) #17	SNRNP35 (ENSODEG00000019870) #18	ENSODEG00000011545 #20	SBNO1 (ENSODEG00000009997) #21	CDK2AP1 (ENSODEG00000010833) #22	PITPNM2 (ENSODEG00000012096) #25	ENSODEG00000010162 #26	OGFOD2 (ENSODEG00000010553) #27	ABCB9 (ENSODEG00000010778) #28	VPS37B (ENSODEG00000010089) #29	HIP1R (ENSODEG00000010675) #30	ENSODEG00000009408 #32	ENSODEG00000010491 #34	ENSODEG00000010246	KNTC1 (ENSODEG00000010993) #35	ENSODEG00000009789	RSRC2 (ENSODEG00000010511) #36	CLIP1 (ENSODEG00000010805)	VPS33A (ENSODEG00000010529)	DIABLO (ENSODEG00000010212)
Sciuridae	ANCESTRAL SPECIES	24	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969.f #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984.j #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Marmotini	ANCESTRAL SPECIES	52	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969.f #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984.j #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Alpin marmot	MODERN SPECIES	82	SCARB1 (ENSMMMG00000024413)	ZNF664 (ENSMMMG00000024475) #8	CCDC92 (ENSMMMG00000024476) #9	DNAH10 (ENSMMMG00000024478) #10	ATP6V0A2 (ENSMMMG00000024488) #11	TCTN2 (ENSMMMG00000024492) #12	GTF2H3 (ENSMMMG00000024494) #13	EIF2B1 (ENSMMMG00000024496) #14	DDX55 (ENSMMMG00000024497) #15	TMED2 (ENSMMMG00000024499) #16	RILPL1 (ENSMMMG00000024500) #17	SNRNP35 (ENSMMMG00000024501) #18	RILPL2 (ENSMMMG00000024502) #19	KMT5A (ENSMMMG00000024503) #20	SBNO1 (ENSMMMG00000024505) #21	CDK2AP1 (ENSMMMG00000024509) #22	MTRFR (ENSMMMG00000024511) #23	MPHOSPH9 (ENSMMMG00000024513) #24	PITPNM2 (ENSMMMG00000024522) #25	ARL6IP4 (ENSMMMG00000024531) #26	OGFOD2 (ENSMMMG00000024533) #27	ABCB9 (ENSMMMG00000024537) #28	VPS37B (ENSMMMG00000024540) #29	HIP1R (ENSMMMG00000024545) #30	DENR (ENSMMMG00000024573) #32	HCAR1 (ENSMMMG00000024574) #33	ENSMMMG00000024575 #34	KNTC1 (ENSMMMG00000024576) #35	RSRC2 (ENSMMMG00000024583) #36	ZCCHC8 (ENSMMMG00000024591) #37	ENSMMMG00000000192
Marmotini_b	ANCESTRAL SPECIES	51	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969.f #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293.a	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984.j #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Arctic ground squirrel	MODERN SPECIES	281	ZNF664 (ENSUPAG00010019016) #8	CCDC92 (ENSUPAG00010019003) #9	DNAH10 (ENSUPAG00010018780) #10	ATP6V0A2 (ENSUPAG00010018746) #11	TCTN2 (ENSUPAG00010018722) #12	GTF2H3 (ENSUPAG00010018709) #13	EIF2B1 (ENSUPAG00010018695) #14	DDX55 (ENSUPAG00010018632) #15	TMED2 (ENSUPAG00010018612) #16	RILPL1 (ENSUPAG00010018580) #17	SNRNP35 (ENSUPAG00010018574) #18	ENSUPAG00010018570	RILPL2 (ENSUPAG00010018566) #19	KMT5A (ENSUPAG00010018535) #20	SBNO1 (ENSUPAG00010018461) #21	CDK2AP1 (ENSUPAG00010018438) #22	MTRFR (ENSUPAG00010018429) #23	MPHOSPH9 (ENSUPAG00010018217) #24	PITPNM2 (ENSUPAG00010018069) #25	ARL6IP4 (ENSUPAG00010018055) #26	OGFOD2 (ENSUPAG00010018024) #27	ABCB9 (ENSUPAG00010018007) #28	VPS37B (ENSUPAG00010017998) #29	HIP1R (ENSUPAG00010017986) #30	ENSUPAG00010017981 #31	DENR (ENSUPAG00010017951) #32	HCAR1 (ENSUPAG00010017945) #33	ENSUPAG00010017937 #34	KNTC1 (ENSUPAG00010017866) #35	RSRC2 (ENSUPAG00010017778) #36	ZCCHC8 (ENSUPAG00010017753) #37
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	188	ENSSTOG00000029829	CD70 (ENSSTOG00000027620)	TUBB4A (ENSSTOG00000020465)	ENSSTOG00000032756	ENSSTOG00000002404	CRB3 (ENSSTOG00000029565)	SLC25A23 (ENSSTOG00000002387)	SLC25A41 (ENSSTOG00000023022)	KHSRP (ENSSTOG00000002371)	ENSSTOG00000032166	GTF2F1 (ENSSTOG00000025689)	PSPN (ENSSTOG00000023397)	ALKBH7 (ENSSTOG00000002368)	CLPP (ENSSTOG00000028013)	ACER1 (ENSSTOG00000002348)	ENSSTOG00000022476 #22	MLLT1 (ENSSTOG00000002340)	ENSSTOG00000019704	ENSSTOG00000007511	RFX2 (ENSSTOG00000027723)	ENSSTOG00000034262	RANBP3 (ENSSTOG00000006462)	CAPS (ENSSTOG00000006493)	VMAC (ENSSTOG00000012822)	NDUFA11 (ENSSTOG00000028356)	ENSSTOG00000022255	NRTN (ENSSTOG00000009542)	DUS3L (ENSSTOG00000025017)	PRR22 (ENSSTOG00000025571)	LONP1 (ENSSTOG00000019884)	ENSSTOG00000020518
Squirrel	MODERN SPECIES	158	NCOR2 (ENSSTOG00000023933)	ZNF664 (ENSSTOG00000005576) #8	CCDC92 (ENSSTOG00000029219) #9	DNAH10 (ENSSTOG00000021382) #10	ATP6V0A2 (ENSSTOG00000006230) #11	TCTN2 (ENSSTOG00000006197) #12	GTF2H3 (ENSSTOG00000006180) #13	EIF2B1 (ENSSTOG00000006157) #14	DDX55 (ENSSTOG00000006121) #15	TMED2 (ENSSTOG00000031742) #16	RILPL1 (ENSSTOG00000027662) #17	SNRNP35 (ENSSTOG00000025145) #18	RILPL2 (ENSSTOG00000002438) #19	ENSSTOG00000021810	SBNO1 (ENSSTOG00000023221) #21	ENSSTOG00000016464 #22	MTRFR (ENSSTOG00000016463) #23	MPHOSPH9 (ENSSTOG00000016461) #24	PITPNM2 (ENSSTOG00000010418) #25	ARL6IP4 (ENSSTOG00000010405) #26	OGFOD2 (ENSSTOG00000026160) #27	ABCB9 (ENSSTOG00000010395) #28	VPS37B (ENSSTOG00000023759) #29	HIP1R (ENSSTOG00000023230) #30	ENSSTOG00000014132 #31	DENR (ENSSTOG00000014128) #32	HCAR1 (ENSSTOG00000001147) #33	ENSSTOG00000020109 #34	KNTC1 (ENSSTOG00000001091) #35	RSRC2 (ENSSTOG00000026548) #36	ZCCHC8 (ENSSTOG00000001683) #37
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	14	XRCC6 (ENSSVLG00005021287)	DESI1 (ENSSVLG00005021220)	PMM1 (ENSSVLG00005021168)	CSDC2 (ENSSVLG00005021115)	POLR3H (ENSSVLG00005021062)	ACO2 (ENSSVLG00005021008)	PHF5A (ENSSVLG00005020965)	TOB2 (ENSSVLG00005020946)	TEF (ENSSVLG00005020887)	ZC3H7B (ENSSVLG00005020817)	ENSSVLG00005020791	ENSSVLG00005020695	CHADL (ENSSVLG00005020628)	L3MBTL2 (ENSSVLG00005020580)	EP300 (ENSSVLG00005020397)	ENSSVLG00005020321 #22	RBX1 (ENSSVLG00005020266)	DNAJB7 (ENSSVLG00005020233)	XPNPEP3 (ENSSVLG00005020124)	SLC25A17 (ENSSVLG00005019724)	MCHR1 (ENSSVLG00005019589)	ENSSVLG00005019466	MRTFA (ENSSVLG00005018986)	SGSM3 (ENSSVLG00005018784)	ENSSVLG00005018698	TNRC6B (ENSSVLG00005017928)	FAM83F (ENSSVLG00005017783)	GRAP2 (ENSSVLG00005017680)	ENTHD1 (ENSSVLG00005017597)	CACNA1I (ENSSVLG00005016425)	RPS19BP1 (ENSSVLG00005016320)
Eurasian red squirrel	MODERN SPECIES	17	ZNF664 (ENSSVLG00005019720) #8	CCDC92 (ENSSVLG00005019696) #9	DNAH10 (ENSSVLG00005018126) #10	ATP6V0A2 (ENSSVLG00005017845) #11	ENSSVLG00005017821	TCTN2 (ENSSVLG00005017773) #12	ENSSVLG00005017397 #13	EIF2B1 (ENSSVLG00005017241) #14	DDX55 (ENSSVLG00005016834) #15	TMED2 (ENSSVLG00005016760) #16	RILPL1 (ENSSVLG00005016709) #17	SNRNP35 (ENSSVLG00005016686) #18	ENSSVLG00005016655 #19	ENSSVLG00005016624 #20	SBNO1 (ENSSVLG00005016123) #21	ENSSVLG00005016062 #22	MTRFR (ENSSVLG00005016030) #23	MPHOSPH9 (ENSSVLG00005015982) #24	PITPNM2 (ENSSVLG00005015895) #25	OGFOD2 (ENSSVLG00005015572) #27	ABCB9 (ENSSVLG00005015420) #28	VPS37B (ENSSVLG00005015346) #29	CCDC62 (ENSSVLG00005015199) #31	ENSSVLG00005015157 #32	HCAR1 (ENSSVLG00005015138) #33	ENSSVLG00005015107 #34	KNTC1 (ENSSVLG00005013983) #35	RSRC2 (ENSSVLG00005013341) #36	ZCCHC8 (ENSSVLG00005012902) #37	ENSSVLG00005012827	CLIP1 (ENSSVLG00005011698)
Eurasian red squirrel	MODERN SPECIES	16	SMIM8 (ENSSVLG00005004302)	C6orf163 (ENSSVLG00005004267)	CFAP206 (ENSSVLG00005015779)	ENSSVLG00005015541	ENSSVLG00005015338	ENSSVLG00005015284	ORC3 (ENSSVLG00005015205)	AKIRIN2 (ENSSVLG00005015169)	SPACA1 (ENSSVLG00005015088)	ENSSVLG00005015043	ENSSVLG00005014998	RNGTT (ENSSVLG00005014885)	PNRC1 (ENSSVLG00005014826)	SRSF12 (ENSSVLG00005014804)	PM20D2 (ENSSVLG00005014707)	ENSSVLG00005014668 #22	GABRR1 (ENSSVLG00005014390)	GABRR2 (ENSSVLG00005014299)	ENSSVLG00005014234	UBE2J1 (ENSSVLG00005014182)	RRAGD (ENSSVLG00005014108)	ENSSVLG00005014078	EDF1 (ENSSVLG00005014055)	ENSSVLG00005013947	ANKRD6 (ENSSVLG00005013665)	LYRM2 (ENSSVLG00005013140)	MDN1 (ENSSVLG00005011919)	CASP8AP2 (ENSSVLG00005011773)	GJA10 (ENSSVLG00005011729)	BACH2 (ENSSVLG00005011670)	MAP3K7 (ENSSVLG00005011461)
Laurasiatheria	ANCESTRAL SPECIES	19	ENSGT00910000147466	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Laurasiatheria_a	ANCESTRAL SPECIES	13	ENSGT00910000147466	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Artiodactyla	ANCESTRAL SPECIES	26	ENSGT00910000147466	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Suina	ANCESTRAL SPECIES	20	ENSGT00910000147466	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Pig	MODERN SPECIES	5	ENSSSCG00000042383	ZNF664 (ENSSSCG00000032962) #8	CCDC92 (ENSSSCG00000009764) #9	DNAH10 (ENSSSCG00000009765) #10	ATP6V0A2 (ENSSSCG00000009766) #11	TCTN2 (ENSSSCG00000009768) #12	ENSSSCG00000009770 #14	GTF2H3 (ENSSSCG00000009769) #13	DDX55 (ENSSSCG00000009771) #15	ENSSSCG00000009772 #16	RILPL1 (ENSSSCG00000009773) #17	SNRNP35 (ENSSSCG00000022212) #18	RILPL2 (ENSSSCG00000009778) #19	KMT5A (ENSSSCG00000009777) #20	SBNO1 (ENSSSCG00000009776) #21	CDK2AP1 (ENSSSCG00000009775) #22	MTRFR (ENSSSCG00000009774) #23	MPHOSPH9 (ENSSSCG00000009779) #24	PITPNM2 (ENSSSCG00000009781) #25	ARL6IP4 (ENSSSCG00000009782) #26	OGFOD2 (ENSSSCG00000009783) #27	ABCB9 (ENSSSCG00000009784) #28	VPS37B (ENSSSCG00000028889) #29	HIP1R (ENSSSCG00000009786) #30	CCDC62 (ENSSSCG00000009787) #31	DENR (ENSSSCG00000009788) #32	HCAR1 (ENSSSCG00000060429) #33	ENSSSCG00000037735 #34	KNTC1 (ENSSSCG00000039546) #35	RSRC2 (ENSSSCG00000009791) #36	ZCCHC8 (ENSSSCG00000009792) #37
Chacoan peccary	DUPLICATION
Chacoan peccary	MODERN SPECIES	130	CCDC115 (ENSCWAG00000008165)	TUBGCP5 (ENSCWAG00000008212)	CYFIP1 (ENSCWAG00000008288)	NIPA2 (ENSCWAG00000008395)	NIPA1 (ENSCWAG00000008507)	FBXO25 (ENSCWAG00000008583)	TDRP (ENSCWAG00000008747)	ENSCWAG00000008787	DLGAP2 (ENSCWAG00000008947)	ENSCWAG00000009369	CLN8 (ENSCWAG00000009388)	ARHGEF10 (ENSCWAG00000009449)	KBTBD11 (ENSCWAG00000009708)	MYOM2 (ENSCWAG00000009744)	CSMD1 (ENSCWAG00000010382)	ENSCWAG00000017142 #22	MCPH1 (ENSCWAG00000017167)	ANGPT2 (ENSCWAG00000017198)	AGPAT5 (ENSCWAG00000017428)	XKR5 (ENSCWAG00000017469)	ENSCWAG00000017533	ENSCWAG00000017541	ENSCWAG00000017573	ENSCWAG00000017605	ENSCWAG00000017643	ENSCWAG00000017674	ENSCWAG00000017695	ENSCWAG00000017737	ENSCWAG00000017759	ENSCWAG00000017778	DEFB1 (ENSCWAG00000017791)
Chacoan peccary	MODERN SPECIES	812	ENSCWAG00000018896	ZNF664 (ENSCWAG00000018885) #8	CCDC92 (ENSCWAG00000018856) #9	DNAH10 (ENSCWAG00000017942) #10	ATP6V0A2 (ENSCWAG00000017765) #11	TCTN2 (ENSCWAG00000017565) #12	GTF2H3 (ENSCWAG00000017499) #13	EIF2B1 (ENSCWAG00000017432) #14	DDX55 (ENSCWAG00000017379) #15	TMED2 (ENSCWAG00000017333) #16	RILPL1 (ENSCWAG00000017251) #17	SNRNP35 (ENSCWAG00000017231) #18	RILPL2 (ENSCWAG00000017196) #19	KMT5A (ENSCWAG00000017159) #20	SBNO1 (ENSCWAG00000017065) #21	ENSCWAG00000017016 #22	MTRFR (ENSCWAG00000016988) #23	MPHOSPH9 (ENSCWAG00000016616) #24	PITPNM2 (ENSCWAG00000016485) #25	ARL6IP4 (ENSCWAG00000016387) #26	OGFOD2 (ENSCWAG00000016295) #27	ABCB9 (ENSCWAG00000015387) #28	VPS37B (ENSCWAG00000015326) #29	HIP1R (ENSCWAG00000015069) #30	CCDC62 (ENSCWAG00000014921) #31	DENR (ENSCWAG00000014849) #32	HCAR1 (ENSCWAG00000014838) #33	ENSCWAG00000014806 #34	KNTC1 (ENSCWAG00000014585) #35	RSRC2 (ENSCWAG00000014528) #36	ZCCHC8 (ENSCWAG00000014473) #37
Artiodactyla_a	ANCESTRAL SPECIES	28	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Camelidae	ANCESTRAL SPECIES	50	ENSGT00910000147466	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Arabian camel	MODERN SPECIES	25	ENSCDRG00005022356	ZNF664 (ENSCDRG00005022355) #8	CCDC92 (ENSCDRG00005022354) #9	DNAH10 (ENSCDRG00005022353) #10	ATP6V0A2 (ENSCDRG00005022349) #11	TCTN2 (ENSCDRG00005022348) #12	GTF2H3 (ENSCDRG00005022347) #13	EIF2B1 (ENSCDRG00005022346) #14	DDX55 (ENSCDRG00005022345) #15	TMED2 (ENSCDRG00005022343) #16	RILPL1 (ENSCDRG00005022342) #17	SNRNP35 (ENSCDRG00005022341) #18	RILPL2 (ENSCDRG00005022340) #19	KMT5A (ENSCDRG00005022339) #20	SBNO1 (ENSCDRG00005022337) #21	CDK2AP1 (ENSCDRG00005022336) #22	MTRFR (ENSCDRG00005022335) #23	MPHOSPH9 (ENSCDRG00005022321) #24	PITPNM2 (ENSCDRG00005022304) #25	ARL6IP4 (ENSCDRG00005022288) #26	OGFOD2 (ENSCDRG00005022262) #27	ABCB9 (ENSCDRG00005022059) #28	VPS37B (ENSCDRG00005021960) #29	HIP1R (ENSCDRG00005021933) #30	CCDC62 (ENSCDRG00005021911) #31	DENR (ENSCDRG00005021906) #32	HCAR1 (ENSCDRG00005021900) #33	ENSCDRG00005021899 #34	KNTC1 (ENSCDRG00005021865) #35	RSRC2 (ENSCDRG00005021846) #36	ZCCHC8 (ENSCDRG00005021767) #37
Artiodactyla_b	ANCESTRAL SPECIES	10	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Pecora	ANCESTRAL SPECIES	14	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a.h #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	28	NCOR2 (ENSCHYG00000002823)	RFLNA (ENSCHYG00000002780) #7	ZNF664 (ENSCHYG00000002761) #8	CCDC92 (ENSCHYG00000002742) #9	DNAH10 (ENSCHYG00000002423) #10	ATP6V0A2 (ENSCHYG00000002278) #11	TCTN2 (ENSCHYG00000002045) #12	EIF2B1 (ENSCHYG00000001930) #14	DDX55 (ENSCHYG00000001883) #15	TMED2 (ENSCHYG00000001824) #16	RILPL1 (ENSCHYG00000001788) #17	SNRNP35 (ENSCHYG00000001759) #18	ENSCHYG00000001726 #19	KMT5A (ENSCHYG00000001688) #20	SBNO1 (ENSCHYG00000001514) #21	ENSCHYG00000001483 #22	MTRFR (ENSCHYG00000001469) #23	MPHOSPH9 (ENSCHYG00000001432) #24	PITPNM2 (ENSCHYG00000001211) #25	OGFOD2 (ENSCHYG00000001031) #27	ABCB9 (ENSCHYG00000000911) #28	VPS37B (ENSCHYG00000000881) #29	HIP1R (ENSCHYG00000000760) #30	CCDC62 (ENSCHYG00000000715) #31	DENR (ENSCHYG00000000677) #32	HCAR1 (ENSCHYG00000000657) #33	ENSCHYG00000000647 #34	KNTC1 (ENSCHYG00000000608) #35	RSRC2 (ENSCHYG00000000561) #36	ZCCHC8 (ENSCHYG00000000520) #37	CLIP1 (ENSCHYG00000000266)
Yarkand deer	MODERN SPECIES	6	ENSCHYG00000017348	COL13A1 (ENSCHYG00000007754)	ENSCHYG00000007385	NEUROG3 (ENSCHYG00000007369)	TSPAN15 (ENSCHYG00000007342)	TACR2 (ENSCHYG00000007301)	HK1 (ENSCHYG00000007068)	HKDC1 (ENSCHYG00000006914)	SUPV3L1 (ENSCHYG00000006830)	VPS26A (ENSCHYG00000006730)	SRGN (ENSCHYG00000006660)	KIFBP (ENSCHYG00000006579)	ENSCHYG00000006256	STOX1 (ENSCHYG00000006190)	ENSCHYG00000006104	ENSCHYG00000006068 #22	TET1 (ENSCHYG00000005993)	SLC25A16 (ENSCHYG00000005961)	DNA2 (ENSCHYG00000005873)	ENSCHYG00000005831	RUFY2 (ENSCHYG00000005352)	HNRNPH3 (ENSCHYG00000005187)	PBLD (ENSCHYG00000026547)	ATOH7 (ENSCHYG00000026539)	MYPN (ENSCHYG00000026483)	HERC4 (ENSCHYG00000026123)	SIRT1 (ENSCHYG00000026011)	DNAJC12 (ENSCHYG00000025961)	LRRTM3 (ENSCHYG00000025928)	CTNNA3 (ENSCHYG00000025898)	ENSCHYG00000025886
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	24	ZPLD1 (ENSCHYG00000022741)	ENSCHYG00000022874	ALCAM (ENSCHYG00000022904)	CBLB (ENSCHYG00000023071)	ENSCHYG00000023292	CCDC54 (ENSCHYG00000023308)	BBX (ENSCHYG00000023346)	CD47 (ENSCHYG00000023572)	ENSCHYG00000023704	ENSCHYG00000023746	HHLA2 (ENSCHYG00000023774)	ENSCHYG00000023837	CIP2A (ENSCHYG00000023938)	DZIP3 (ENSCHYG00000024257)	TRAT1 (ENSCHYG00000024313)	ENSCHYG00000024384 #22	MORC1 (ENSCHYG00000024514)	C3orf85 (ENSCHYG00000024599)	ENSCHYG00000024617	ENSCHYG00000024637	ENSCHYG00000024659	NECTIN3 (ENSCHYG00000024732)	CD96 (ENSCHYG00000024781)	PHLDB2 (ENSCHYG00000024975)	ABHD10 (ENSCHYG00000025736)	TAGLN3 (ENSCHYG00000014563)	TMPRSS7 (ENSCHYG00000014608)	C3orf52 (ENSCHYG00000014671)	GCSAM (ENSCHYG00000014705)	SLC9C1 (ENSCHYG00000014772)	CD200 (ENSCHYG00000015189)
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000024831	ENSCHYG00000024844	ENSCHYG00000024865	ENSCHYG00000024874	ENSCHYG00000024884	ENSCHYG00000024891	DMD (ENSCHYG00000025075)	ENSCHYG00000017141	TAB3 (ENSCHYG00000017183)	ENSCHYG00000017279	TASL (ENSCHYG00000017678)	NR0B1 (ENSCHYG00000017774)	ENSCHYG00000017837	ENSCHYG00000017854	ENSCHYG00000017868	ENSCHYG00000017897 #22	ENSCHYG00000017951	ENSCHYG00000017970	ENSCHYG00000018076	IL1RAPL1 (ENSCHYG00000018100)	ENSCHYG00000018292	ENSCHYG00000018456	ENSCHYG00000018596	ENSCHYG00000018685	ENSCHYG00000018734	ENSCHYG00000018884	ENSCHYG00000018901	PPP4R3C (ENSCHYG00000018927)	ENSCHYG00000018962	ENSCHYG00000019078	ENSCHYG00000019103
Percora_a	ANCESTRAL SPECIES	17	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a.h #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Siberian musk deer	MODERN SPECIES	1175	ENSMMSG00000010602	ZNF664 (ENSMMSG00000010571) #8	CCDC92 (ENSMMSG00000010557) #9	DNAH10 (ENSMMSG00000009153) #10	ATP6V0A2 (ENSMMSG00000008802) #11	TCTN2 (ENSMMSG00000008713) #12	GTF2H3 (ENSMMSG00000008625) #13	EIF2B1 (ENSMMSG00000008577) #14	DDX55 (ENSMMSG00000008523) #15	ENSMMSG00000008469 #16	RILPL1 (ENSMMSG00000008429) #17	SNRNP35 (ENSMMSG00000008417) #18	RILPL2 (ENSMMSG00000008381) #19	KMT5A (ENSMMSG00000008337) #20	SBNO1 (ENSMMSG00000007991) #21	CDK2AP1 (ENSMMSG00000007909) #22	MTRFR (ENSMMSG00000007833) #23	MPHOSPH9 (ENSMMSG00000007673) #24	PITPNM2 (ENSMMSG00000007490) #25	ARL6IP4 (ENSMMSG00000007417) #26	OGFOD2 (ENSMMSG00000007329) #27	ABCB9 (ENSMMSG00000006821) #28	VPS37B (ENSMMSG00000006776) #29	HIP1R (ENSMMSG00000006691) #30	CCDC62 (ENSMMSG00000006617) #31	DENR (ENSMMSG00000006542) #32	HCAR1 (ENSMMSG00000006525) #33	ENSMMSG00000006509 #34	ENSMMSG00000006493	KNTC1 (ENSMMSG00000006101) #35	ENSMMSG00000005999 #36
Bovidae	ANCESTRAL SPECIES	17	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a.h #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Bovinae	ANCESTRAL SPECIES	13	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a.h #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.tb.a #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Bos	ANCESTRAL SPECIES	14	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a.h #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.tb.a #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Bos_b	ANCESTRAL SPECIES	13	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a.h #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.tb.a #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Hybrid Bos Indicus	MODERN SPECIES	8	RFLNA (ENSBIXG00005017354) #7	ZNF664 (ENSBIXG00005017417) #8	CCDC92 (ENSBIXG00005017440) #9	DNAH10 (ENSBIXG00005017801) #10	ATP6V0A2 (ENSBIXG00005002899) #11	TCTN2 (ENSBIXG00005017892) #12	GTF2H3 (ENSBIXG00005017928) #13	EIF2B1 (ENSBIXG00005017976) #14	DDX55 (ENSBIXG00005018009) #15	ENSBIXG00005018022 #16	RILPL1 (ENSBIXG00005018058) #17	SNRNP35 (ENSBIXG00005018071) #18	RILPL2 (ENSBIXG00005018087) #19	KMT5A (ENSBIXG00005018110) #20	SBNO1 (ENSBIXG00005003003) #21	CDK2AP1 (ENSBIXG00005018647) #22	MTRFR (ENSBIXG00005018667) #23	MPHOSPH9 (ENSBIXG00005018750) #24	PITPNM2 (ENSBIXG00005018862) #25	ARL6IP4 (ENSBIXG00005003078) #26	OGFOD2 (ENSBIXG00005018997) #27	ABCB9 (ENSBIXG00005019126) #28	VPS37B (ENSBIXG00005019149) #29	HIP1R (ENSBIXG00005019187) #30	CCDC62 (ENSBIXG00005019229) #31	ENSBIXG00005019274 #32	HCAR1 (ENSBIXG00005019282) #33	ENSBIXG00005019295	ENSBIXG00005003137 #34	KNTC1 (ENSBIXG00005019365) #35	RSRC2 (ENSBIXG00005007824) #36
Cow	MODERN SPECIES	8	NCOR2 (ENSBTAG00000024603)	RFLNA (ENSBTAG00000039688) #7	CCDC92 (ENSBTAG00000020346) #9	DNAH10 (ENSBTAG00000016523) #10	ATP6V0A2 (ENSBTAG00000007272) #11	TCTN2 (ENSBTAG00000007271) #12	GTF2H3 (ENSBTAG00000007270) #13	EIF2B1 (ENSBTAG00000007269) #14	DDX55 (ENSBTAG00000007266) #15	TMED2 (ENSBTAG00000039630) #16	RILPL1 (ENSBTAG00000008061) #17	SNRNP35 (ENSBTAG00000008060) #18	RILPL2 (ENSBTAG00000007804) #19	KMT5A (ENSBTAG00000000139) #20	SBNO1 (ENSBTAG00000020505) #21	CDK2AP1 (ENSBTAG00000020504) #22	MTRFR (ENSBTAG00000020503) #23	MPHOSPH9 (ENSBTAG00000008470) #24	PITPNM2 (ENSBTAG00000001597) #25	ARL6IP4 (ENSBTAG00000001594) #26	OGFOD2 (ENSBTAG00000001593) #27	ABCB9 (ENSBTAG00000008464) #28	VPS37B (ENSBTAG00000048809) #29	HIP1R (ENSBTAG00000021595) #30	CCDC62 (ENSBTAG00000003527) #31	ENSBTAG00000050187 #31	DENR (ENSBTAG00000032433) #32	HCAR1 (ENSBTAG00000000908) #33	ENSBTAG00000049993	ENSBTAG00000047904 #34	KNTC1 (ENSBTAG00000019278) #35
Bos_a	ANCESTRAL SPECIES	14	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a.h #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.tb.a #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Domestic yak	MODERN SPECIES	7	RFLNA (ENSBGRG00000013070) #7	ENSBGRG00000013159	CCDC92 (ENSBGRG00000013180) #9	DNAH10 (ENSBGRG00000013299) #10	ATP6V0A2 (ENSBGRG00000014392) #11	TCTN2 (ENSBGRG00000014507) #12	GTF2H3 (ENSBGRG00000014896) #13	EIF2B1 (ENSBGRG00000015076) #14	DDX55 (ENSBGRG00000015442) #15	ENSBGRG00000015576 #16	RILPL1 (ENSBGRG00000003817) #17	SNRNP35 (ENSBGRG00000003848) #18	RILPL2 (ENSBGRG00000003914) #19	KMT5A (ENSBGRG00000003959) #20	SBNO1 (ENSBGRG00000004044) #21	CDK2AP1 (ENSBGRG00000004118) #22	MTRFR (ENSBGRG00000004182) #23	MPHOSPH9 (ENSBGRG00000004229) #24	PITPNM2 (ENSBGRG00000004510) #25	ARL6IP4 (ENSBGRG00000004664) #26	OGFOD2 (ENSBGRG00000004788) #27	ABCB9 (ENSBGRG00000004865) #28	ENSBGRG00000004920	VPS37B (ENSBGRG00000004928) #29	HIP1R (ENSBGRG00000004979) #30	CCDC62 (ENSBGRG00000005267) #31	DENR (ENSBGRG00000005335) #32	HCAR1 (ENSBGRG00000005381) #33	ENSBGRG00000005395 #34	KNTC1 (ENSBGRG00000005445) #35	RSRC2 (ENSBGRG00000006158) #36
Wild yak	MODERN SPECIES	1693	RFLNA (ENSBMUG00000012930) #7	ZNF664 (ENSBMUG00000012953) #8	CCDC92 (ENSBMUG00000012999) #9	DNAH10 (ENSBMUG00000013156) #10	ATP6V0A2 (ENSBMUG00000013220) #11	TCTN2 (ENSBMUG00000013307) #12	GTF2H3 (ENSBMUG00000013366) #13	EIF2B1 (ENSBMUG00000013429) #14	DDX55 (ENSBMUG00000013482) #15	ENSBMUG00000013509 #16	RILPL1 (ENSBMUG00000013535) #17	SNRNP35 (ENSBMUG00000013550) #18	RILPL2 (ENSBMUG00000013560) #19	KMT5A (ENSBMUG00000013621) #20	SBNO1 (ENSBMUG00000013722) #21	CDK2AP1 (ENSBMUG00000013749) #22	MTRFR (ENSBMUG00000013762) #23	MPHOSPH9 (ENSBMUG00000013829) #24
American bison	MODERN SPECIES	3083	RFLNA (ENSBBBG00000019068) #7	ZNF664 (ENSBBBG00000008166) #8	DNAH10 (ENSBBBG00000019031) #10	ENSBBBG00000004760 #11	ENSBBBG00000018865 #11	TCTN2 (ENSBBBG00000018843) #12	GTF2H3 (ENSBBBG00000004721) #13	EIF2B1 (ENSBBBG00000004694) #14	DDX55 (ENSBBBG00000004669) #15	TMED2 (ENSBBBG00000004642) #16	RILPL1 (ENSBBBG00000008459) #17	SNRNP35 (ENSBBBG00000018656) #18	RILPL2 (ENSBBBG00000004634) #19	KMT5A (ENSBBBG00000018642) #20	SBNO1 (ENSBBBG00000018611) #21	CDK2AP1 (ENSBBBG00000004567) #22	MTRFR (ENSBBBG00000018517) #23	MPHOSPH9 (ENSBBBG00000004553) #24	PITPNM2 (ENSBBBG00000018449) #25	ARL6IP4 (ENSBBBG00000018423) #26	OGFOD2 (ENSBBBG00000018421) #27	ABCB9 (ENSBBBG00000018410) #28	VPS37B (ENSBBBG00000018241) #29	ENSBBBG00000018231 #30	CCDC62 (ENSBBBG00000018219) #31	DENR (ENSBBBG00000018196) #32	HCAR1 (ENSBBBG00000018179) #33	ENSBBBG00000004461 #34	KNTC1 (ENSBBBG00000018154) #35	RSRC2 (ENSBBBG00000017992) #36	ZCCHC8 (ENSBBBG00000017973) #37
Caprinae	ANCESTRAL SPECIES	17	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a.h #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853.h #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349.l #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Rambouillet Sheep	MODERN SPECIES	8	NCOR2 (ENSOARG00020004496)	RFLNA (ENSOARG00020004608) #7	ZNF664 (ENSOARG00020004636) #8	CCDC92 (ENSOARG00020004649) #9	DNAH10 (ENSOARG00020004755) #10	ATP6V0A2 (ENSOARG00020005688) #11	GTF2H3 (ENSOARG00020006091) #13	EIF2B1 (ENSOARG00020006158) #14	DDX55 (ENSOARG00020006197) #15	ENSOARG00020006237 #16	RILPL1 (ENSOARG00020006267) #17	SNRNP35 (ENSOARG00020006392) #18	RILPL2 (ENSOARG00020006408) #19	KMT5A (ENSOARG00020006507) #20	SBNO1 (ENSOARG00020006615) #21	CDK2AP1 (ENSOARG00020007090) #22	MTRFR (ENSOARG00020007146) #23	MPHOSPH9 (ENSOARG00020007197) #24	PITPNM2 (ENSOARG00020007626) #25	ARL6IP4 (ENSOARG00020007838) #26	OGFOD2 (ENSOARG00020007968) #27	ABCB9 (ENSOARG00020008114) #28	VPS37B (ENSOARG00020008992) #29	HIP1R (ENSOARG00020009023) #30	CCDC62 (ENSOARG00020009386) #31	ENSOARG00020009481 #32	HCAR1 (ENSOARG00020009533) #33	KNTC1 (ENSOARG00020009573) #35	RSRC2 (ENSOARG00020009980) #36	ZCCHC8 (ENSOARG00020010059) #37	CLIP1 (ENSOARG00020010333)
Goat	MODERN SPECIES	8	NCOR2 (ENSCHIG00000009383)	RFLNA (ENSCHIG00000019076) #7	CCDC92 (ENSCHIG00000013573) #9	DNAH10 (ENSCHIG00000017214) #10	ATP6V0A2 (ENSCHIG00000014148) #11	TCTN2 (ENSCHIG00000016006) #12	GTF2H3 (ENSCHIG00000012326) #13	ENSCHIG00000015301 #14	DDX55 (ENSCHIG00000020402) #15	ENSCHIG00000014651 #16	RILPL1 (ENSCHIG00000012485) #17	SNRNP35 (ENSCHIG00000006364) #18	RILPL2 (ENSCHIG00000006455) #19	KMT5A (ENSCHIG00000013358) #20	SBNO1 (ENSCHIG00000008382) #21	CDK2AP1 (ENSCHIG00000017864) #22	MTRFR (ENSCHIG00000022229) #23	MPHOSPH9 (ENSCHIG00000013299) #24	PITPNM2 (ENSCHIG00000009066) #25	ARL6IP4 (ENSCHIG00000014369) #26	OGFOD2 (ENSCHIG00000000762) #27	ABCB9 (ENSCHIG00000014567) #28	VPS37B (ENSCHIG00000017615) #29	HIP1R (ENSCHIG00000025079) #30	ENSCHIG00000009822 #31	DENR (ENSCHIG00000025489) #32	HCAR1 (ENSCHIG00000011136) #33	ENSCHIG00000010746 #34	KNTC1 (ENSCHIG00000010808) #35	RSRC2 (ENSCHIG00000013928) #36	ZCCHC8 (ENSCHIG00000000649) #37
Cetacea	ANCESTRAL SPECIES	11	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.lb #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Blue whale	MODERN SPECIES	5	RFLNA (ENSBMSG00010021648) #7	ZNF664 (ENSBMSG00010021654) #8	CCDC92 (ENSBMSG00010021660) #9	DNAH10 (ENSBMSG00010021703) #10	ATP6V0A2 (ENSBMSG00010021797) #11	TCTN2 (ENSBMSG00010021810) #12	ENSBMSG00010021833 #13	EIF2B1 (ENSBMSG00010021841) #14	DDX55 (ENSBMSG00010021852) #15	ENSBMSG00010021859 #16	RILPL1 (ENSBMSG00010021862) #17	SNRNP35 (ENSBMSG00010021872) #18	RILPL2 (ENSBMSG00010021877) #19	KMT5A (ENSBMSG00010021887) #20	SBNO1 (ENSBMSG00010021901) #21	CDK2AP1 (ENSBMSG00010021921) #22	MTRFR (ENSBMSG00010021927) #23	MPHOSPH9 (ENSBMSG00010021936) #24	PITPNM2 (ENSBMSG00010021952) #25	ARL6IP4 (ENSBMSG00010021982) #26	OGFOD2 (ENSBMSG00010021986) #27	ABCB9 (ENSBMSG00010021997) #28	VPS37B (ENSBMSG00010022080) #29	HIP1R (ENSBMSG00010022085) #30	CCDC62 (ENSBMSG00010022103) #31	DENR (ENSBMSG00010022109) #32	HCAR1 (ENSBMSG00010022111) #33	ENSBMSG00010022113 #34	KNTC1 (ENSBMSG00010022120) #35	ENSBMSG00010022147 #36	ZCCHC8 (ENSBMSG00010022154) #37
Odontoceti	ANCESTRAL SPECIES	10	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a.l #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.lb #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Sperm whale	MODERN SPECIES	10	SCARB1 (ENSPCTG00005015475)	NCOR2 (ENSPCTG00005013606)	ENSPCTG00005013467 #7	ZNF664 (ENSPCTG00005013444) #8	ENSPCTG00005013395 #10	ATP6V0A2 (ENSPCTG00005013165) #11	TCTN2 (ENSPCTG00005013015) #12	GTF2H3 (ENSPCTG00005012922) #13	ENSPCTG00005012884	TMED2 (ENSPCTG00005012820) #16	RILPL1 (ENSPCTG00005012641) #17	SNRNP35 (ENSPCTG00005012613) #18	RILPL2 (ENSPCTG00005012549) #19	KMT5A (ENSPCTG00005012443) #20	SBNO1 (ENSPCTG00005011851) #21	CDK2AP1 (ENSPCTG00005011777) #22	C19H12orf65 (ENSPCTG00005011741) #23	ENSPCTG00005011703 #24	VPS37B (ENSPCTG00005011671) #29	HIP1R (ENSPCTG00005011607) #30	CCDC62 (ENSPCTG00005011429) #31	DENR (ENSPCTG00005011303) #32	HCAR1 (ENSPCTG00005011288) #33	ENSPCTG00005011280 #34	KNTC1 (ENSPCTG00005010211) #35	RSRC2 (ENSPCTG00005010085) #36	ZCCHC8 (ENSPCTG00005010035) #37	ENSPCTG00005010009	CLIP1 (ENSPCTG00005009772)	VPS33A (ENSPCTG00005009687)	ENSPCTG00005009664
Odontoceti_a	ANCESTRAL SPECIES	9	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a.l #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.lb #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Dolphin	MODERN SPECIES	2757														KMT5A (ENSTTRG00000015884) #20	SBNO1 (ENSTTRG00000015882) #21	CDK2AP1 (ENSTTRG00000015881) #22	MTRFR (ENSTTRG00000015880) #23	MPHOSPH9 (ENSTTRG00000015878) #24	PITPNM2 (ENSTTRG00000015876) #25	ENSTTRG00000015875 #26	OGFOD2 (ENSTTRG00000015873) #27	ABCB9 (ENSTTRG00000015871) #28	VPS37B (ENSTTRG00000015869) #29	HIP1R (ENSTTRG00000015863) #30	CCDC62 (ENSTTRG00000015859) #31	DENR (ENSTTRG00000015856) #32	HCAR1 (ENSTTRG00000015852) #33	KNTC1 (ENSTTRG00000015820) #35	RSRC2 (ENSTTRG00000015815) #36	ZCCHC8 (ENSTTRG00000015809) #37	CLIP1 (ENSTTRG00000015803)
Odontoceti_b	ANCESTRAL SPECIES	10	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a.l #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.lb #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00390000005254.i.a.b.d.a.b	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Monodontidae	ANCESTRAL SPECIES	8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a.l #11	ENSGT00950000182881.a.b.a.a.k #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.lb #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00390000005254.i.a.b.d.a.b	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	41	ENSDLEG00000020579	ENSDLEG00000020574	ENSDLEG00000020569	RAI2 (ENSDLEG00000020567)	SCML1 (ENSDLEG00000020562)	NHS (ENSDLEG00000020557)	ENSDLEG00000020554	ENSDLEG00000020552	REPS2 (ENSDLEG00000020540)	RBBP7 (ENSDLEG00000020531)	TXLNG (ENSDLEG00000020525)	SYAP1 (ENSDLEG00000020521)	S100G (ENSDLEG00000020514)	CTPS2 (ENSDLEG00000020502)	GRPR (ENSDLEG00000020499)	ENSDLEG00000020497 #22	AP1S2 (ENSDLEG00000020491)	ENSDLEG00000020486	TMEM27 (ENSDLEG00000020480)	ACE2 (ENSDLEG00000020473)	BMX (ENSDLEG00000020462)	ENSDLEG00000020460	VEGFD (ENSDLEG00000020457)	PIGA (ENSDLEG00000020456)	ASB11 (ENSDLEG00000020450)	ASB9 (ENSDLEG00000020449)	MOSPD2 (ENSDLEG00000020446)	FANCB (ENSDLEG00000020445)
Beluga whale	MODERN SPECIES	60	DNAH10 (ENSDLEG00000014255) #10	ENSDLEG00000014106 #11	ENSDLEG00000014087 #11	TCTN2 (ENSDLEG00000013916) #12	GTF2H3 (ENSDLEG00000013786) #13	EIF2B1 (ENSDLEG00000013713) #14	DDX55 (ENSDLEG00000013646) #15	TMED2 (ENSDLEG00000013616) #16	RILPL1 (ENSDLEG00000013607) #17	SNRNP35 (ENSDLEG00000013599) #18	ENSDLEG00000013596	ENSDLEG00000013562 #19	KMT5A (ENSDLEG00000013519) #20	ENSDLEG00000013503 #21	SBNO1 (ENSDLEG00000013428) #21	CDK2AP1 (ENSDLEG00000013383) #22	CUNH12orf65 (ENSDLEG00000013374) #23	MPHOSPH9 (ENSDLEG00000013123) #24	PITPNM2 (ENSDLEG00000010486) #25	ARL6IP4 (ENSDLEG00000010186) #26	OGFOD2 (ENSDLEG00000010174) #27	ABCB9 (ENSDLEG00000010074) #28	VPS37B (ENSDLEG00000010052) #29	HIP1R (ENSDLEG00000009964) #30	ENSDLEG00000009938 #31	DENR (ENSDLEG00000009916) #32	ENSDLEG00000009913 #33	ENSDLEG00000009902 #34	ENSDLEG00000009893 #33	ENSDLEG00000009885 #34	KNTC1 (ENSDLEG00000009808) #35
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	309	ENSMMNG00015010891	ENSMMNG00015010874	ENSMMNG00015010865	RAI2 (ENSMMNG00015010851)	ENSMMNG00015010836	NHS (ENSMMNG00015010825)	ENSMMNG00015010820	REPS2 (ENSMMNG00015010789)	RBBP7 (ENSMMNG00015020317)	TXLNG (ENSMMNG00015020285)	SYAP1 (ENSMMNG00015020254)	S100G (ENSMMNG00015020239)	CTPS2 (ENSMMNG00015020210)	ENSMMNG00015020193	GRPR (ENSMMNG00015020179)	ENSMMNG00015020167 #22	AP1S2 (ENSMMNG00015020114)	ZRSR2 (ENSMMNG00015020077)	ACE2 (ENSMMNG00015020031)	BMX (ENSMMNG00015020006)	ENSMMNG00015019975	VEGFD (ENSMMNG00015019944)	PIGA (ENSMMNG00015019883)	ASB11 (ENSMMNG00015019802)	ASB9 (ENSMMNG00015019741)	MOSPD2 (ENSMMNG00015019716)	FANCB (ENSMMNG00015019684)	GLRA2 (ENSMMNG00015019622)	ENSMMNG00015019597	GEMIN8 (ENSMMNG00015019591)	ENSMMNG00015019477
Narwhal	MODERN SPECIES	295	RFLNA (ENSMMNG00015014678) #7	ZNF664 (ENSMMNG00015014663) #8	CCDC92 (ENSMMNG00015014649) #9	DNAH10 (ENSMMNG00015014436) #10	TCTN2 (ENSMMNG00015014347) #12	GTF2H3 (ENSMMNG00015014316) #13	EIF2B1 (ENSMMNG00015014291) #14	DDX55 (ENSMMNG00015014261) #15	ENSMMNG00015014242 #16	RILPL1 (ENSMMNG00015014218) #17	SNRNP35 (ENSMMNG00015014207) #18	ENSMMNG00015014203	RILPL2 (ENSMMNG00015014193) #19	KMT5A (ENSMMNG00015014175) #20	SBNO1 (ENSMMNG00015014089) #21	ENSMMNG00015014063 #22	MTRFR (ENSMMNG00015014053) #23	MPHOSPH9 (ENSMMNG00015013985) #24	PITPNM2 (ENSMMNG00015013950) #25	ARL6IP4 (ENSMMNG00015013926) #26	OGFOD2 (ENSMMNG00015013906) #27	ABCB9 (ENSMMNG00015013828) #28	VPS37B (ENSMMNG00015013787) #29	HIP1R (ENSMMNG00015013730) #30	CCDC62 (ENSMMNG00015013700) #31	DENR (ENSMMNG00015013673) #32	HCAR1 (ENSMMNG00015013665) #33	ENSMMNG00015013656 #34	KNTC1 (ENSMMNG00015013622) #35	RSRC2 (ENSMMNG00015013584) #36	ZCCHC8 (ENSMMNG00015013568) #37
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES	5	ZNF664 (ENSPSNG00000014517) #8	CCDC92 (ENSPSNG00000014416) #9	DNAH10 (ENSPSNG00000012415) #10	ATP6V0A2 (ENSPSNG00000012157) #11	TCTN2 (ENSPSNG00000011869) #12	EIF2B1 (ENSPSNG00000011704) #14	DDX55 (ENSPSNG00000011545) #15	ENSPSNG00000011454 #16	ENSPSNG00000011371	RILPL1 (ENSPSNG00000011291) #17	SNRNP35 (ENSPSNG00000011257) #18	ENSPSNG00000011228	RILPL2 (ENSPSNG00000011175) #19	KMT5A (ENSPSNG00000011033) #20	SBNO1 (ENSPSNG00000010322) #21	ENSPSNG00000010200 #22	MTRFR (ENSPSNG00000010145) #23	MPHOSPH9 (ENSPSNG00000009949) #24	PITPNM2 (ENSPSNG00000009815) #25	ARL6IP4 (ENSPSNG00000009715) #26	OGFOD2 (ENSPSNG00000009644) #27	ABCB9 (ENSPSNG00000009526) #28	VPS37B (ENSPSNG00000009456) #29	HIP1R (ENSPSNG00000009299) #30	CCDC62 (ENSPSNG00000009117) #31	DENR (ENSPSNG00000009027) #32	HCAR1 (ENSPSNG00000009002) #33	ENSPSNG00000008980 #34	KNTC1 (ENSPSNG00000008927) #35	RSRC2 (ENSPSNG00000008823) #36	ZCCHC8 (ENSPSNG00000008709) #37
Vaquita	MODERN SPECIES	34	CDKL5 (ENSPSNG00000020000)	ENSPSNG00000019959	ENSPSNG00000019901	RAI2 (ENSPSNG00000019870)	ENSPSNG00000019850	NHS (ENSPSNG00000019626)	ENSPSNG00000019571	ENSPSNG00000019537	REPS2 (ENSPSNG00000019316)	RBBP7 (ENSPSNG00000019143)	TXLNG (ENSPSNG00000019040)	SYAP1 (ENSPSNG00000018949)	S100G (ENSPSNG00000018903)	CTPS2 (ENSPSNG00000018863)	GRPR (ENSPSNG00000018819)	ENSPSNG00000018801 #22	AP1S2 (ENSPSNG00000018562)	ZRSR2 (ENSPSNG00000018477)	ENSPSNG00000018439	ENSPSNG00000018350	ACE2 (ENSPSNG00000018309)	BMX (ENSPSNG00000018138)	PIR (ENSPSNG00000018098)	VEGFD (ENSPSNG00000018023)	PIGA (ENSPSNG00000017883)	ASB11 (ENSPSNG00000017679)	ASB9 (ENSPSNG00000017529)	MOSPD2 (ENSPSNG00000017448)	FANCB (ENSPSNG00000017420)	GLRA2 (ENSPSNG00000017149)	ENSPSNG00000017081
Laurasiatheria_b	DUPLICATION
Laurasiatheria_b	DUPLICATION
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.a #22
Carnivora	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.a #22
Caniformia	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.a #22
Canidae	ANCESTRAL SPECIES	23	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.vb.a #16	ENSGT00940000157897 #17	ENSGT00940000157648.k #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.tb.a #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Canis_lupus	ANCESTRAL SPECIES	25	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.vb.a #16	ENSGT00940000157897 #17	ENSGT00940000157648.k #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.tb.a #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Dog	MODERN SPECIES	18	NCOR2 (ENSCAFG00845016132)	ENSCAFG00845016375 #7	ZNF664 (ENSCAFG00845016535) #8	CCDC92 (ENSCAFG00845016614) #9	ENSCAFG00845016709 #10	ATP6V0A2 (ENSCAFG00845016867) #11	GTF2H3 (ENSCAFG00845017053) #13	EIF2B1 (ENSCAFG00845017139) #14	DDX55 (ENSCAFG00845017243) #15	TMED2 (ENSCAFG00845017382) #16	RILPL1 (ENSCAFG00845017523) #17	SNRNP35 (ENSCAFG00845017714) #18	ENSCAFG00845017823	RILPL2 (ENSCAFG00845017861) #19	SBNO1 (ENSCAFG00845017968) #21	CDK2AP1 (ENSCAFG00845018326) #22	MTRFR (ENSCAFG00845018392) #23	MPHOSPH9 (ENSCAFG00845018682) #24	PITPNM2 (ENSCAFG00845019469) #25	ARL6IP4 (ENSCAFG00845019730) #26	OGFOD2 (ENSCAFG00845019812) #27	ABCB9 (ENSCAFG00845020006) #28	VPS37B (ENSCAFG00845020182) #29	HIP1R (ENSCAFG00845020224) #30	CCDC62 (ENSCAFG00845020395) #31	DENR (ENSCAFG00845020463) #32	HCAR1 (ENSCAFG00845020532) #33	HCAR2 (ENSCAFG00845020553) #34	KNTC1 (ENSCAFG00845020624) #35	RSRC2 (ENSCAFG00845021020) #36	ZCCHC8 (ENSCAFG00845021126) #37
Dingo	MODERN SPECIES	108	RFLNA (ENSCAFG00020014323) #7	ZNF664 (ENSCAFG00020014328) #8	CCDC92 (ENSCAFG00020014329) #9	DNAH10 (ENSCAFG00020014337) #10	ATP6V0A2 (ENSCAFG00020014431) #11	TCTN2 (ENSCAFG00020015210) #12	GTF2H3 (ENSCAFG00020015219) #13	EIF2B1 (ENSCAFG00020015248) #14	DDX55 (ENSCAFG00020015254) #15	ENSCAFG00020015263 #16	RILPL1 (ENSCAFG00020015266) #17	ENSCAFG00020015272 #18	RILPL2 (ENSCAFG00020015274) #19	KMT5A (ENSCAFG00020015280) #20	SBNO1 (ENSCAFG00020015363) #21	ENSCAFG00020016166 #22	MTRFR (ENSCAFG00020016169) #23	MPHOSPH9 (ENSCAFG00020016178) #24	ENSCAFG00020016227 #25	ENSCAFG00020016267 #25	ARL6IP4 (ENSCAFG00020016288) #26	OGFOD2 (ENSCAFG00020016290) #27	ABCB9 (ENSCAFG00020016292) #28	VPS37B (ENSCAFG00020016305) #29	HIP1R (ENSCAFG00020016310) #30	ENSCAFG00020016324 #31	DENR (ENSCAFG00020016334) #32	HCAR1 (ENSCAFG00020016342) #33	ENSCAFG00020016345 #34	KNTC1 (ENSCAFG00020016349) #35	RSRC2 (ENSCAFG00020016384) #36
Red fox	MODERN SPECIES	16	NHLH2 (ENSVVUG00000010299)	CASQ2 (ENSVVUG00000010295)	VANGL1 (ENSVVUG00000010259)	TSPAN2 (ENSVVUG00000010237)	TSHB (ENSVVUG00000010234)	ENSVVUG00000010227	ENSVVUG00000010223	SYCP1 (ENSVVUG00000009950)	ENSVVUG00000009922	ENSVVUG00000009910	ENSVVUG00000009905	SIKE1 (ENSVVUG00000009899)	CSDE1 (ENSVVUG00000009890)	NRAS (ENSVVUG00000009823)	AMPD1 (ENSVVUG00000009582)	ENSVVUG00000009548 #22	DENND2C (ENSVVUG00000009535)	BCAS2 (ENSVVUG00000009511)	TRIM33 (ENSVVUG00000007748)	ENSVVUG00000007664	SYT6 (ENSVVUG00000007613)	OLFML3 (ENSVVUG00000007603)	HIPK1 (ENSVVUG00000007577)	DCLRE1B (ENSVVUG00000007565)	AP4B1 (ENSVVUG00000007559)	BCL2L15 (ENSVVUG00000007555)	PTPN22 (ENSVVUG00000007537)	RSBN1 (ENSVVUG00000007530)	PHTF1 (ENSVVUG00000007517)	NAGK (ENSVVUG00000007503)	PAIP2B (ENSVVUG00000007493)
Laurasiatheria_c	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.a #22
Chiroptera	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.a #22
Microchiroptera	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.a #22
Microbat	MODERN SPECIES	957	MBTPS2 (ENSMLUG00000013179)	ENSMLUG00000025014	ENSMLUG00000013185	PHEX (ENSMLUG00000013196)	ENSMLUG00000022233	PTCHD1 (ENSMLUG00000010976)	ENSMLUG00000015445	PRDX4 (ENSMLUG00000004904)	ENSMLUG00000004909	ENSMLUG00000004919	APOO (ENSMLUG00000004925)	ENSMLUG00000001671	KLHL15 (ENSMLUG00000001675)	EIF2S3B (ENSMLUG00000012424)	ENSMLUG00000003962	ENSMLUG00000024661 #22	ENSMLUG00000028600	ENSMLUG00000029461	ENSMLUG00000004525	PCYT1B (ENSMLUG00000004532)	POLA1 (ENSMLUG00000004537)	ENSMLUG00000022745	MAGEB18 (ENSMLUG00000005309)	ENSMLUG00000024423	ENSMLUG00000008009	ENSMLUG00000030314	ENSMLUG00000027726	ENSMLUG00000029898	ENSMLUG00000022187	ENSMLUG00000016106	ENSMLUG00000010720
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.b #22
Carnivora	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.b #22
Caniformia	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.b #22
Canidae	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.b #22
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.b #22
Dingo	MODERN SPECIES	223	NHLH2 (ENSCAFG00020020915)	CASQ2 (ENSCAFG00020020924)	VANGL1 (ENSCAFG00020020963)	NGF (ENSCAFG00020020970)	TSPAN2 (ENSCAFG00020020982)	TSHB (ENSCAFG00020020987)	SYCP1 (ENSCAFG00020020995)	ENSCAFG00020021008	ENSCAFG00020000163	ENSCAFG00020000446	ENSCAFG00020000466	SIKE1 (ENSCAFG00020000472)	CSDE1 (ENSCAFG00020000481)	NRAS (ENSCAFG00020000486)	AMPD1 (ENSCAFG00020000496)	ENSCAFG00020000589 #22	DENND2C (ENSCAFG00020000607)	BCAS2 (ENSCAFG00020000774)	ENSCAFG00020000776	ENSCAFG00020000793	ENSCAFG00020000801	SYT6 (ENSCAFG00020000821)	OLFML3 (ENSCAFG00020000921)	HIPK1 (ENSCAFG00020000962)	DCLRE1B (ENSCAFG00020001384)	AP4B1 (ENSCAFG00020001386)	BCL2L15 (ENSCAFG00020001388)	ENSCAFG00020001395	RSBN1 (ENSCAFG00020001416)	PHTF1 (ENSCAFG00020001471)	ENSCAFG00020001496
Laurasiatheria_c	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.b #22
Chiroptera	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.b #22
Microchiroptera	ANCESTRAL SPECIES																	ENSGT00940000155149.tb.b #22
Microbat	MODERN SPECIES	1131															SFRP1 (ENSMLUG00000014511)	ENSMLUG00000016461 #22	GOLGA7 (ENSMLUG00000014516)	GINS4 (ENSMLUG00000017409)	MBD3L1 (ENSMLUG00000027189)	GPAT4 (ENSMLUG00000005245)	ENSMLUG00000005260	ANK1 (ENSMLUG00000005262)	KAT6A (ENSMLUG00000017445)	AP3M2 (ENSMLUG00000002005)	PLAT (ENSMLUG00000002013)	ENSMLUG00000010048	ENSMLUG00000026380	POLB (ENSMLUG00000022469)	METTL21C (ENSMLUG00000016774)	ENSMLUG00000016777	ENSMLUG00000011159
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Laurasiatheria_c	ANCESTRAL SPECIES	21	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Equus	ANCESTRAL SPECIES	38	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Donkey	MODERN SPECIES	28	RFLNA (ENSEASG00005012838) #7	ZNF664 (ENSEASG00005028123) #8	CCDC92 (ENSEASG00005028504) #9	DNAH10 (ENSEASG00005012800) #10	ATP6V0A2 (ENSEASG00005012792) #11	TCTN2 (ENSEASG00005012778) #12	GTF2H3 (ENSEASG00005012773) #13	EIF2B1 (ENSEASG00005012766) #14	DDX55 (ENSEASG00005012650) #15	TMED2 (ENSEASG00005029905) #16	RILPL1 (ENSEASG00005012621) #17	SNRNP35 (ENSEASG00005024491) #18	RILPL2 (ENSEASG00005012613) #19	KMT5A (ENSEASG00005012603) #20	SBNO1 (ENSEASG00005012595) #21	ENSEASG00005038356 #22	ENSEASG00005033250 #23	MPHOSPH9 (ENSEASG00005012562) #24	PITPNM2 (ENSEASG00005012546) #25	ARL6IP4 (ENSEASG00005012544) #26	OGFOD2 (ENSEASG00005012542) #27	ABCB9 (ENSEASG00005012539) #28	VPS37B (ENSEASG00005024629) #29	HIP1R (ENSEASG00005012528) #30	CCDC62 (ENSEASG00005012519) #31	DENR (ENSEASG00005012513) #32	HCAR1 (ENSEASG00005012509) #33	KNTC1 (ENSEASG00005012473) #35	RSRC2 (ENSEASG00005012449) #36	ZCCHC8 (ENSEASG00005012441) #37	CLIP1 (ENSEASG00005012430)
Horse	MODERN SPECIES	29	NCOR2 (ENSECAG00000007272)	RFLNA (ENSECAG00000007040) #7	ZNF664 (ENSECAG00000005750) #8	CCDC92 (ENSECAG00000021239) #9	DNAH10 (ENSECAG00000008535) #10	TCTN2 (ENSECAG00000024489) #12	GTF2H3 (ENSECAG00000023959) #13	EIF2B1 (ENSECAG00000021362) #14	DDX55 (ENSECAG00000011237) #15	TMED2 (ENSECAG00000034285) #16	SNRNP35 (ENSECAG00000051629) #18	RILPL1 (ENSECAG00000006191) #17	RILPL2 (ENSECAG00000006019) #19	KMT5A (ENSECAG00000021039) #20	SBNO1 (ENSECAG00000006127) #21	CDK2AP1 (ENSECAG00000002931) #22	MTRFR (ENSECAG00000001057) #23	MPHOSPH9 (ENSECAG00000014402) #24	PITPNM2 (ENSECAG00000024566) #25	ARL6IP4 (ENSECAG00000023197) #26	OGFOD2 (ENSECAG00000022293) #27	ABCB9 (ENSECAG00000012796) #28	HIP1R (ENSECAG00000008993) #30	CCDC62 (ENSECAG00000054926) #31	DENR (ENSECAG00000021824) #32	HCAR1 (ENSECAG00000001516) #33	ENSECAG00000048330 #34	KNTC1 (ENSECAG00000021072) #35	RSRC2 (ENSECAG00000013815) #36	ZCCHC8 (ENSECAG00000006984) #37	CLIP1 (ENSECAG00000009648)
Chiroptera	ANCESTRAL SPECIES	18	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Megabat	MODERN SPECIES	1113						TCTN2 (ENSPVAG00000015324) #12	GTF2H3 (ENSPVAG00000015323) #13	EIF2B1 (ENSPVAG00000015322) #14	DDX55 (ENSPVAG00000015321) #15	TMED2 (ENSPVAG00000015320) #16	RILPL1 (ENSPVAG00000015318) #17	SNRNP35 (ENSPVAG00000015317) #18	RILPL2 (ENSPVAG00000015315) #19	KMT5A (ENSPVAG00000015312) #20	SBNO1 (ENSPVAG00000015304) #21	CDK2AP1 (ENSPVAG00000015302) #22	MTRFR (ENSPVAG00000015301) #23	MPHOSPH9 (ENSPVAG00000015297) #24
Microchiroptera	ANCESTRAL SPECIES	9	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Greater horseshoe bat	MODERN SPECIES	17	NCOR2 (ENSRFEG00010019251)	RFLNA (ENSRFEG00010019446) #7	CCDC92 (ENSRFEG00010019481) #9	DNAH10 (ENSRFEG00010019568) #10	ENSRFEG00010020526 #11	TCTN2 (ENSRFEG00010020548) #12	GTF2H3 (ENSRFEG00010020592) #13	EIF2B1 (ENSRFEG00010020657) #14	DDX55 (ENSRFEG00010020703) #15	TMED2 (ENSRFEG00010020754) #16	RILPL1 (ENSRFEG00010020787) #17	ENSRFEG00010020821 #18	RILPL2 (ENSRFEG00010020835) #19	KMT5A (ENSRFEG00010020854) #20	SBNO1 (ENSRFEG00010020877) #21	CDK2AP1 (ENSRFEG00010021003) #22	MTRFR (ENSRFEG00010021016) #23	MPHOSPH9 (ENSRFEG00010021034) #24	PITPNM2 (ENSRFEG00010021093) #25	ARL6IP4 (ENSRFEG00010021192) #26	OGFOD2 (ENSRFEG00010021211) #27	ABCB9 (ENSRFEG00010021244) #28	VPS37B (ENSRFEG00010021283) #29	HIP1R (ENSRFEG00010021294) #30	CCDC62 (ENSRFEG00010021311) #31	DENR (ENSRFEG00010021321) #32	HCAR1 (ENSRFEG00010021337) #33	ENSRFEG00010021341 #34	KNTC1 (ENSRFEG00010021377) #35	RSRC2 (ENSRFEG00010021465) #36	ZCCHC8 (ENSRFEG00010021485) #37
Microbat	MODERN SPECIES	1213	ENSMLUG00000016663	ENSMLUG00000005952	PPM1F (ENSMLUG00000007934)	TOP3B (ENSMLUG00000010279)	ENSMLUG00000010373	VPREB3 (ENSMLUG00000000439)	CHCHD10 (ENSMLUG00000004950)	MMP11 (ENSMLUG00000004956)	SMARCB1 (ENSMLUG00000004975)	DERL3 (ENSMLUG00000004990)	SLC2A11 (ENSMLUG00000006581)	SNRNP35 (ENSMLUG00000025311) #18	ENSMLUG00000030444 #19	KMT5A (ENSMLUG00000017166) #20	SBNO1 (ENSMLUG00000017159) #21	ENSMLUG00000017157 #22	MTRFR (ENSMLUG00000007001) #23	MPHOSPH9 (ENSMLUG00000017153) #24
Carnivora	ANCESTRAL SPECIES	13	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Caniformia	ANCESTRAL SPECIES	9	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.vb.a #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Caniformia_b	ANCESTRAL SPECIES	29	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.vb.a #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Mustelinae	ANCESTRAL SPECIES	34	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.vb.a #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
American mink	MODERN SPECIES	69	ZNF664 (ENSNVIG00000021563) #8	CCDC92 (ENSNVIG00000021538) #9	DNAH10 (ENSNVIG00000021382) #10	ATP6V0A2 (ENSNVIG00000021362) #11	TCTN2 (ENSNVIG00000021333) #12	ENSNVIG00000021324 #13	ENSNVIG00000021317 #13	EI2BA (ENSNVIG00000021292) #14	DDX55 (ENSNVIG00000021256) #15	TMED2 (ENSNVIG00000021242) #16	RILPL1 (ENSNVIG00000021226) #17	SNRNP35 (ENSNVIG00000021216) #18	RILPL2 (ENSNVIG00000021212) #19	KMT5A (ENSNVIG00000021182) #20	SBNO1 (ENSNVIG00000021140) #21	ENSNVIG00000021121 #22	MTRFR (ENSNVIG00000021115) #23	MPHOSPH9 (ENSNVIG00000021002) #24	PITPNM2 (ENSNVIG00000020373) #25	ARL6IP4 (ENSNVIG00000020340) #26	OGFOD2 (ENSNVIG00000020317) #27	ABCB9 (ENSNVIG00000020258) #28	VPS37B (ENSNVIG00000020247) #29	HIP1R (ENSNVIG00000018883) #30	ENSNVIG00000018866 #31	DENR (ENSNVIG00000018825) #32	HCAR1 (ENSNVIG00000018816) #33	ENSNVIG00000018813 #34	ENSNVIG00000018731 #35	RSRC2 (ENSNVIG00000018702) #36	ZCCHC8 (ENSNVIG00000018677) #37
Ferret	MODERN SPECIES	200	CCDC92 (ENSMPUG00000001443) #9	DNAH10 (ENSMPUG00000001444) #10	ATP6V0A2 (ENSMPUG00000001470) #11	TCTN2 (ENSMPUG00000001483) #12	GTF2H3 (ENSMPUG00000001492) #13	EIF2B1 (ENSMPUG00000001499) #14	DDX55 (ENSMPUG00000001505) #15	TMED2 (ENSMPUG00000001598) #16	ENSMPUG00000001623	RILPL1 (ENSMPUG00000001625) #17	SNRNP35 (ENSMPUG00000019392) #18	RILPL2 (ENSMPUG00000001628) #19	KMT5A (ENSMPUG00000001631) #20	ENSMPUG00000001654	SBNO1 (ENSMPUG00000001658) #21	CDK2AP1 (ENSMPUG00000001667) #22	MTRFR (ENSMPUG00000001679) #23	MPHOSPH9 (ENSMPUG00000001684) #24	PITPNM2 (ENSMPUG00000001692) #25	ARL6IP4 (ENSMPUG00000001705) #26	OGFOD2 (ENSMPUG00000001726) #27	ABCB9 (ENSMPUG00000001731) #28	VPS37B (ENSMPUG00000001808) #29	HIP1R (ENSMPUG00000001819) #30	ENSMPUG00000001824 #31	DENR (ENSMPUG00000001826) #32	HCAR1 (ENSMPUG00000001850) #33	ENSMPUG00000019395 #34	KNTC1 (ENSMPUG00000001860) #35	RSRC2 (ENSMPUG00000001984) #36	ZCCHC8 (ENSMPUG00000001986) #37
Ursidae	ANCESTRAL SPECIES	34	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.vb.a #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Ursus	ANCESTRAL SPECIES	38	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.vb.a #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
American black bear	MODERN SPECIES	823															SBNO1 (ENSUAMG00000019671) #21	CDK2AP1 (ENSUAMG00000019670) #22	MTRFR (ENSUAMG00000019669) #23	ENSUAMG00000019668	MPHOSPH9 (ENSUAMG00000019560) #24
Polar bear	MODERN SPECIES	153	NCOR2 (ENSUMAG00000001334)	ZNF664 (ENSUMAG00000002927) #8	ENSUMAG00000002930 #9	DNAH10 (ENSUMAG00000002952) #10	ATP6V0A2 (ENSUMAG00000003144) #11	TCTN2 (ENSUMAG00000003750) #12	GTF2H3 (ENSUMAG00000003845) #13	EIF2B1 (ENSUMAG00000003854) #14	DDX55 (ENSUMAG00000003869) #15	TMED2 (ENSUMAG00000003878) #16	RILPL1 (ENSUMAG00000003900) #17	SNRNP35 (ENSUMAG00000003914) #18	RILPL2 (ENSUMAG00000003917) #19	KMT5A (ENSUMAG00000003942) #20	SBNO1 (ENSUMAG00000004002) #21	CDK2AP1 (ENSUMAG00000004022) #22	MTRFR (ENSUMAG00000004025) #23	ENSUMAG00000004028	MPHOSPH9 (ENSUMAG00000004034) #24	PITPNM2 (ENSUMAG00000004100) #25	ARL6IP4 (ENSUMAG00000004427) #26	OGFOD2 (ENSUMAG00000004432) #27	ABCB9 (ENSUMAG00000004440) #28	ENSUMAG00000004464 #29	HIP1R (ENSUMAG00000004529) #30	CCDC62 (ENSUMAG00000005154) #31	ENSUMAG00000005166 #32	HCAR1 (ENSUMAG00000005169) #33	ENSUMAG00000005173 #34	KNTC1 (ENSUMAG00000005188) #35	RSRC2 (ENSUMAG00000005268) #36
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	2288	ENSAMEG00000018866	SLC25A53 (ENSAMEG00000018884)	ENSAMEG00000025488	ENSAMEG00000005655	ENSAMEG00000018529	RAB9B (ENSAMEG00000018531)	PLP1 (ENSAMEG00000010934)	ENSAMEG00000010953	TMEM31 (ENSAMEG00000023869)	MORF4L2 (ENSAMEG00000018540)	TCEAL1 (ENSAMEG00000010997)	ENSAMEG00000029365	ENSAMEG00000025900	ENSAMEG00000028387	ENSAMEG00000026586	ENSAMEG00000028199 #22	ENSAMEG00000018551	TCEAL9 (ENSAMEG00000018554)	ENSAMEG00000024185	ENSAMEG00000018519	ENSAMEG00000018516	ENSAMEG00000018509	ENSAMEG00000024203	ENSAMEG00000028297	ENSAMEG00000018426	FAM133A (ENSAMEG00000019145)	NAP1L3 (ENSAMEG00000019124)	ENSAMEG00000019505	ENSAMEG00000019756	ENSAMEG00000015196	PABPC5 (ENSAMEG00000020114)
Giant Panda	MODERN SPECIES	3	NCOR2 (ENSAMEG00000015417)	RFLNA (ENSAMEG00000028972) #7	ZNF664 (ENSAMEG00000019174) #8	CCDC92 (ENSAMEG00000015407) #9	DNAH10 (ENSAMEG00000015348) #10	ATP6V0A2 (ENSAMEG00000015340) #11	TCTN2 (ENSAMEG00000015333) #12	GTF2H3 (ENSAMEG00000015321) #13	EIF2B1 (ENSAMEG00000015307) #14	DDX55 (ENSAMEG00000015274) #15	RILPL1 (ENSAMEG00000015252) #17	SNRNP35 (ENSAMEG00000019650) #18	RILPL2 (ENSAMEG00000023720) #19	KMT5A (ENSAMEG00000015229) #20	SBNO1 (ENSAMEG00000015151) #21	ENSAMEG00000024387 #22	MTRFR (ENSAMEG00000027255) #23	MPHOSPH9 (ENSAMEG00000015126) #24	PITPNM2 (ENSAMEG00000015064) #25	ARL6IP4 (ENSAMEG00000015055) #26	OGFOD2 (ENSAMEG00000015042) #27	ABCB9 (ENSAMEG00000014978) #28	VPS37B (ENSAMEG00000014970) #29	HIP1R (ENSAMEG00000014877) #30	CCDC62 (ENSAMEG00000014861) #31	DENR (ENSAMEG00000014851) #32	HCAR1 (ENSAMEG00000019624) #33	ENSAMEG00000019608 #34	KNTC1 (ENSAMEG00000014771) #35	RSRC2 (ENSAMEG00000014751) #36	ZCCHC8 (ENSAMEG00000014731) #37
Giant Panda	MODERN SPECIES	2288	HMGN5 (ENSAMEG00000030368)	SH3BGRL (ENSAMEG00000027788)	POU3F4 (ENSAMEG00000019562)	CYLC1 (ENSAMEG00000002561)	RPS6KA6 (ENSAMEG00000003648)	HDX (ENSAMEG00000000875)	ENSAMEG00000019387	APOOL (ENSAMEG00000000829)	ENSAMEG00000000814	ZNF711 (ENSAMEG00000013076)	POF1B (ENSAMEG00000013055)	CHM (ENSAMEG00000010190)	ENSAMEG00000018811	DACH2 (ENSAMEG00000000232)	KLHL4 (ENSAMEG00000004825)	ENSAMEG00000019391 #22	ENSAMEG00000004819	CPXCR1 (ENSAMEG00000003724)	ENSAMEG00000029029	PABPC5 (ENSAMEG00000020114)	ENSAMEG00000015196	ENSAMEG00000019756	ENSAMEG00000019505	NAP1L3 (ENSAMEG00000019124)	FAM133A (ENSAMEG00000019145)	ENSAMEG00000018426	ENSAMEG00000028297	ENSAMEG00000024203	ENSAMEG00000018509	ENSAMEG00000018516	ENSAMEG00000018519
Canidae	ANCESTRAL SPECIES																	ENSGT00940000155149.ub #22
Red fox	DUPLICATION
Red fox	MODERN SPECIES	4	DEPDC1B (ENSVVUG00000000387)	ENSVVUG00000000336	ENSVVUG00000000189	ENSVVUG00000000147	PDE4D (ENSVVUG00000021728)	ENSVVUG00000021726	RAB3C (ENSVVUG00000021713)	GAPT (ENSVVUG00000021709)	PLK2 (ENSVVUG00000021496)	ENSVVUG00000021458	ACTBL2 (ENSVVUG00000021457)	GPBP1 (ENSVVUG00000021451)	MIER3 (ENSVVUG00000021443)	SETD9 (ENSVVUG00000021441)	MAP3K1 (ENSVVUG00000021439)	ENSVVUG00000021432 #22	ANKRD55 (ENSVVUG00000021427)	IL6ST (ENSVVUG00000021415)	ENSVVUG00000021408	ENSVVUG00000021400	DDX4 (ENSVVUG00000021369)	ENSVVUG00000021361	SLC38A9 (ENSVVUG00000021357)	PLPP1 (ENSVVUG00000021353)	ENSVVUG00000021349	MTREX (ENSVVUG00000021337)	DHX29 (ENSVVUG00000021328)	CCNO (ENSVVUG00000021324)	MCIDAS (ENSVVUG00000021322)	GPX8 (ENSVVUG00000021318)	GZMA (ENSVVUG00000021314)
Red fox	MODERN SPECIES	132	RFLNA (ENSVVUG00000027297) #7	ZNF664 (ENSVVUG00000027299) #8	CCDC92 (ENSVVUG00000027301) #9	DNAH10 (ENSVVUG00000027325) #10	ATP6V0A2 (ENSVVUG00000027487) #11	TCTN2 (ENSVVUG00000027490) #12	GTF2H3 (ENSVVUG00000027493) #13	EIF2B1 (ENSVVUG00000027498) #14	DDX55 (ENSVVUG00000027506) #15	TMED2 (ENSVVUG00000027753) #16	RILPL1 (ENSVVUG00000027759) #17	KMT5A (ENSVVUG00000027761) #18	RILPL2 (ENSVVUG00000027775) #19	KMT5A (ENSVVUG00000027782) #20	SBNO1 (ENSVVUG00000027807) #21	ENSVVUG00000027810 #22	CUNH12orf65 (ENSVVUG00000027811) #23	ENSVVUG00000027817 #24	PITPNM2 (ENSVVUG00000027860) #25	ARL6IP4 (ENSVVUG00000028080) #26	OGFOD2 (ENSVVUG00000028082) #27	ABCB9 (ENSVVUG00000028084) #28	VPS37B (ENSVVUG00000028085) #29	HIP1R (ENSVVUG00000028087) #30	ENSVVUG00000028092 #31	DENR (ENSVVUG00000028097) #32	HCAR1 (ENSVVUG00000028099) #33
Felidae	ANCESTRAL SPECIES	20	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349.f #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Cat	MODERN SPECIES	243	RFLNA (ENSFCAG00000033731) #7	ZNF664 (ENSFCAG00000011064) #8	CCDC92 (ENSFCAG00000011063) #9	DNAH10 (ENSFCAG00000011062) #10	ATP6V0A2 (ENSFCAG00000040645) #11	TCTN2 (ENSFCAG00000019255) #12	GTF2H3 (ENSFCAG00000003772) #13	EIF2B1 (ENSFCAG00000003771) #14	DDX55 (ENSFCAG00000003770) #15	TMED2 (ENSFCAG00000003769) #16	RILPL1 (ENSFCAG00000001161) #17	SNRNP35 (ENSFCAG00000001159) #18	RILPL2 (ENSFCAG00000001158) #19	KMT5A (ENSFCAG00000029172) #20	SBNO1 (ENSFCAG00000015331) #21	CDK2AP1 (ENSFCAG00000026822) #22	MTRFR (ENSFCAG00000015328) #23	MPHOSPH9 (ENSFCAG00000006134) #24	PITPNM2 (ENSFCAG00000006133) #25	ARL6IP4 (ENSFCAG00000006132) #26	OGFOD2 (ENSFCAG00000006131) #27	ABCB9 (ENSFCAG00000006130) #28	VPS37B (ENSFCAG00000046181) #29	HIP1R (ENSFCAG00000006128) #30	CCDC62 (ENSFCAG00000006127) #31	DENR (ENSFCAG00000006126) #32	HCAR1 (ENSFCAG00000040471) #33	HCAR2 (ENSFCAG00000016311) #34	KNTC1 (ENSFCAG00000009060) #35	RSRC2 (ENSFCAG00000024679) #36	ZCCHC8 (ENSFCAG00000027671) #37
Panthera	ANCESTRAL SPECIES	28	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349.f #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Tiger	MODERN SPECIES	131	ENSPTIG00000013542	ZNF664 (ENSPTIG00000007237) #8	ENSPTIG00000004786 #9	DNAH10 (ENSPTIG00000006073) #10	ATP6V0A2 (ENSPTIG00000021913) #11	TCTN2 (ENSPTIG00000005821) #12	GTF2H3 (ENSPTIG00000008146) #13	EIF2B1 (ENSPTIG00000009480) #14	DDX55 (ENSPTIG00000011490) #15	TMED2 (ENSPTIG00000013802) #16	RILPL1 (ENSPTIG00000014029) #17	SNRNP35 (ENSPTIG00000015832) #18	RILPL2 (ENSPTIG00000016253) #19	KMT5A (ENSPTIG00000016588) #20	SBNO1 (ENSPTIG00000017803) #21	CDK2AP1 (ENSPTIG00000010063) #22	MTRFR (ENSPTIG00000011744) #23	MPHOSPH9 (ENSPTIG00000013150) #24	ENSPTIG00000017865 #25	ENSPTIG00000018763 #25	ARL6IP4 (ENSPTIG00000020573) #26	OGFOD2 (ENSPTIG00000002908) #27	ABCB9 (ENSPTIG00000007983) #28	ENSPTIG00000011436 #30	CCDC62 (ENSPTIG00000012979) #31	DENR (ENSPTIG00000014761) #32	KNTC1 (ENSPTIG00000016091) #35	RSRC2 (ENSPTIG00000011117) #36	ZCCHC8 (ENSPTIG00000017015) #37	CLIP1 (ENSPTIG00000020163)	VPS33A (ENSPTIG00000011050)
Panthera_a	ANCESTRAL SPECIES	30	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149.ub #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349.f #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
lion	MODERN SPECIES	12	RFLNA (ENSPLOG00000017048) #7	ZNF664 (ENSPLOG00000017024) #8	CCDC92 (ENSPLOG00000016992) #9	DNAH10 (ENSPLOG00000015702) #10	ATP6V0A2 (ENSPLOG00000015496) #11	TCTN2 (ENSPLOG00000015443) #12	GTF2H3 (ENSPLOG00000015352) #13	EIF2B1 (ENSPLOG00000015270) #14	DDX55 (ENSPLOG00000015202) #15	TMED2 (ENSPLOG00000015117) #16	RILPL1 (ENSPLOG00000015061) #17	SNRNP35 (ENSPLOG00000015038) #18	RILPL2 (ENSPLOG00000015017) #19	KMT5A (ENSPLOG00000014892) #20	SBNO1 (ENSPLOG00000014244) #21	CDK2AP1 (ENSPLOG00000014184) #22	MTRFR (ENSPLOG00000014148) #23	MPHOSPH9 (ENSPLOG00000013893) #24	PITPNM2 (ENSPLOG00000013540) #25	ARL6IP4 (ENSPLOG00000013377) #26	OGFOD2 (ENSPLOG00000013292) #27	ABCB9 (ENSPLOG00000012760) #28	VPS37B (ENSPLOG00000012640) #29	HIP1R (ENSPLOG00000012547) #30	CCDC62 (ENSPLOG00000012504) #31	DENR (ENSPLOG00000012387) #32	HCAR1 (ENSPLOG00000012360) #33	ENSPLOG00000012344 #34	KNTC1 (ENSPLOG00000011488) #35	RSRC2 (ENSPLOG00000011290) #36	ZCCHC8 (ENSPLOG00000011014) #37
leopard	MODERN SPECIES	50	RFLNA (ENSPPRG00000022786) #7	ZNF664 (ENSPPRG00000015105) #8	CCDC92 (ENSPPRG00000000347) #9	DNAH10 (ENSPPRG00000006823) #10	ATP6V0A2 (ENSPPRG00000007634) #11	TCTN2 (ENSPPRG00000008489) #12	GTF2H3 (ENSPPRG00000010119) #13	EIF2B1 (ENSPPRG00000010902) #14	DDX55 (ENSPPRG00000012157) #15	TMED2 (ENSPPRG00000012614) #16	RILPL1 (ENSPPRG00000012916) #17	SNRNP35 (ENSPPRG00000013139) #18	RILPL2 (ENSPPRG00000013241) #19	KMT5A (ENSPPRG00000013307) #20	SBNO1 (ENSPPRG00000022092) #21	CDK2AP1 (ENSPPRG00000024818) #22	MTRFR (ENSPPRG00000024772) #23	MPHOSPH9 (ENSPPRG00000023406) #24	PITPNM2 (ENSPPRG00000002347) #25	ARL6IP4 (ENSPPRG00000003154) #26	OGFOD2 (ENSPPRG00000004554) #27	ABCB9 (ENSPPRG00000006881) #28	VPS37B (ENSPPRG00000007917) #29	HIP1R (ENSPPRG00000009145) #30	CCDC62 (ENSPPRG00000009400) #31	ENSPPRG00000009664 #32	ENSPPRG00000015887 #34	KNTC1 (ENSPPRG00000017283) #35	RSRC2 (ENSPPRG00000022034) #36	ZCCHC8 (ENSPPRG00000023848) #37	CLIP1 (ENSPPRG00000006072)
Eulipotyphla	ANCESTRAL SPECIES	2177																ENSGT00940000155149 #22	ENSGT00390000012759 #23
Common shrew	MODERN SPECIES	2818																ENSSARG00000008201 #22
Hedgehog	MODERN SPECIES	2788																CDK2AP1 (ENSEEUG00000007245) #22	MTRFR (ENSEEUG00000007231) #23
Atlantogenata	ANCESTRAL SPECIES	28	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36
Xenarthra	ANCESTRAL SPECIES	158		ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00940000153974.B #27
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1633		ZNF664 (ENSDNOG00000049308) #8	CCDC92 (ENSDNOG00000037304) #9	DNAH10 (ENSDNOG00000011082) #10	ATP6V0A2 (ENSDNOG00000007744) #11	TCTN2 (ENSDNOG00000036358) #12	GTF2H3 (ENSDNOG00000030827) #13	EIF2B1 (ENSDNOG00000005184) #14	DDX55 (ENSDNOG00000005167) #15	TMED2 (ENSDNOG00000038512) #16	RILPL1 (ENSDNOG00000010400) #17	SNRNP35 (ENSDNOG00000038603) #18	RILPL2 (ENSDNOG00000042925) #19	ENSDNOG00000010371 #20	SBNO1 (ENSDNOG00000017147) #21	ENSDNOG00000017145 #22	MTRFR (ENSDNOG00000034728) #23	ENSDNOG00000040789	ENSDNOG00000017142 #24	PITPNM2 (ENSDNOG00000038651) #25	OGFOD2 (ENSDNOG00000016274) #27
Armadillo	MODERN SPECIES	2210															ENSDNOG00000033265	ENSDNOG00000044525 #22
Armadillo	MODERN SPECIES	3853																ENSDNOG00000038259 #22	ENSDNOG00000039720
Armadillo	MODERN SPECIES	1309													ENSDNOG00000005524	ENSDNOG00000048516	ENSDNOG00000045157	ENSDNOG00000031418 #22	SMCHD1 (ENSDNOG00000002614)	NDC80 (ENSDNOG00000012306)	ENSDNOG00000033759
Sloth	DUPLICATION
Sloth	MODERN SPECIES	11221																ENSCHOG00000010786 #22
Sloth	MODERN SPECIES	3278																ENSCHOG00000010939 #22	ENSCHOG00000010933	MPHOSPH9 (ENSCHOG00000010910) #24
Afrotheria	ANCESTRAL SPECIES	62	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642.eb #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Tenrec	MODERN SPECIES	3611																CDK2AP1 (ENSETEG00000005632) #22	MTRFR (ENSETEG00000005627) #23	SBNO1 (ENSETEG00000005620) #21
Afrotheria_a	ANCESTRAL SPECIES	59	ENSGT00390000016836.a #7	ENSGT01100000263534.b.k.a.b.a #8	ENSGT00430000031027.a #9	ENSGT00940000154642.eb #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000160030 #20	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Elephant	MODERN SPECIES	580	RFLNA (ENSLAFG00000023315) #7	ZNF664 (ENSLAFG00000004183) #8	CCDC92 (ENSLAFG00000008325) #9	DNAH10 (ENSLAFG00000001092) #10	ATP6V0A2 (ENSLAFG00000007308) #11	TCTN2 (ENSLAFG00000007302) #12	GTF2H3 (ENSLAFG00000007300) #13	EIF2B1 (ENSLAFG00000007295) #14	DDX55 (ENSLAFG00000007293) #15	TMED2 (ENSLAFG00000003972) #16	RILPL1 (ENSLAFG00000012166) #17	SNRNP35 (ENSLAFG00000022302) #18	RILPL2 (ENSLAFG00000009721) #19	KMT5A (ENSLAFG00000012679) #20	SBNO1 (ENSLAFG00000002135) #21	CDK2AP1 (ENSLAFG00000023258) #22	MTRFR (ENSLAFG00000002134) #23	MPHOSPH9 (ENSLAFG00000016863) #24	PITPNM2 (ENSLAFG00000021788) #25	ARL6IP4 (ENSLAFG00000005314) #26	OGFOD2 (ENSLAFG00000005309) #27	ABCB9 (ENSLAFG00000007040) #28	VPS37B (ENSLAFG00000031714) #29	HIP1R (ENSLAFG00000007033) #30	ENSLAFG00000009370 #31	DENR (ENSLAFG00000031728) #32	HCAR1 (ENSLAFG00000009377) #33	ENSLAFG00000020507 #34	KNTC1 (ENSLAFG00000016493) #35	RSRC2 (ENSLAFG00000016486) #36	ZCCHC8 (ENSLAFG00000016477) #37
Hyrax	MODERN SPECIES	3000																CDK2AP1 (ENSPCAG00000016217) #22	MTRFR (ENSPCAG00000016193) #23	MPHOSPH9 (ENSPCAG00000016060) #24
Marsupialia	ANCESTRAL SPECIES	16	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648.e.a #18	ENSGT00940000160182 #19	ENSGT00940000163293.a	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00940000167638
Opossum	MODERN SPECIES	2	SVOP (ENSMODG00000002767)	NCOR2 (ENSMODG00000012632)	ENSMODG00000050159 #7	CCDC92 (ENSMODG00000012594) #9	DNAH10 (ENSMODG00000012591) #10	ATP6V0A2 (ENSMODG00000012545) #11	ENSMODG00000029041 #12	GTF2H3 (ENSMODG00000023728) #13	EIF2B1 (ENSMODG00000049098) #14	DDX55 (ENSMODG00000012519) #15	TMED2 (ENSMODG00000044023) #16	SNRNP35 (ENSMODG00000012481) #18	ENSMODG00000012479 #19	ENSMODG00000012475	SBNO1 (ENSMODG00000012470) #21	CDK2AP1 (ENSMODG00000012451) #22	MTRFR (ENSMODG00000051165) #23	ENSMODG00000012444	MPHOSPH9 (ENSMODG00000012441) #24	PITPNM2 (ENSMODG00000012432) #25	ENSMODG00000038968 #26	OGFOD2 (ENSMODG00000012407) #27	ENSMODG00000044499	ABCB9 (ENSMODG00000012398) #28	VPS37B (ENSMODG00000046240) #29	HIP1R (ENSMODG00000012341) #30	CCDC62 (ENSMODG00000012308) #31	DENR (ENSMODG00000012302) #32	HCAR1 (ENSMODG00000012299) #33	ENSMODG00000012297 #34	ENSMODG00000046487
Marsupialia_b	ANCESTRAL SPECIES	17	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.u.b #16	ENSGT00940000157897 #17	ENSGT00940000157648.e.a #18	ENSGT00940000160182 #19	ENSGT00940000163293.a	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00940000167638
Tasmanian devil	MODERN SPECIES		ENSSHAG00000005093 #7	CCDC92 (ENSSHAG00000027791) #9	DNAH10 (ENSSHAG00000016128) #10	ENSSHAG00000024824 #11	ENSSHAG00000022113 #11	TCTN2 (ENSSHAG00000015992) #12	GTF2H3 (ENSSHAG00000015906) #13	EIF2B1 (ENSSHAG00000015862) #14	DDX55 (ENSSHAG00000015820) #15	TMED2 (ENSSHAG00000029643) #16	RILPL1 (ENSSHAG00000024995) #17	ENSSHAG00000030912 #18	RILPL2 (ENSSHAG00000015435) #19	ENSSHAG00000015376	SBNO1 (ENSSHAG00000015139) #21	CDK2AP1 (ENSSHAG00000021305) #22	ENSSHAG00000030753 #23	MPHOSPH9 (ENSSHAG00000014776) #24	PITPNM2 (ENSSHAG00000013775) #25	OGFOD2 (ENSSHAG00000022194) #27	ENSSHAG00000031319	ABCB9 (ENSSHAG00000013438) #28	VPS37B (ENSSHAG00000021086) #29	HIP1R (ENSSHAG00000012763) #30	DENR (ENSSHAG00000031687) #32	ENSSHAG00000023205 #31	HCAR1 (ENSSHAG00000021088) #33	ENSSHAG00000023464 #34	KNTC1 (ENSSHAG00000011028) #35	RSRC2 (ENSSHAG00000010885) #36	ZCCHC8 (ENSSHAG00000029332) #37
Diprotodontia	ANCESTRAL SPECIES	56	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.u.b #16	ENSGT00940000157897 #17	ENSGT00940000157648.e.a #18	ENSGT00940000160182 #19	ENSGT00940000163293.a	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00940000167638
Wallaby	MODERN SPECIES	3655																CDK2AP1 (ENSMEUG00000009438) #22	MTRFR (ENSMEUG00000009430) #23
Diprotodontia_a	ANCESTRAL SPECIES	55	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143.u.b #16	ENSGT00940000157897 #17	ENSGT00940000157648.e.a #18	ENSGT00940000160182 #19	ENSGT00940000163293.a	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a.b #33	ENSGT00990000203619.A.b.b.b.b.a.a.a #34	ENSGT00390000007883 #35	ENSGT00940000167638
koala	MODERN SPECIES	202	NCOR2 (ENSPCIG00000020159)	RFLNA (ENSPCIG00000034680) #7	CCDC92 (ENSPCIG00000033283) #9	DNAH10 (ENSPCIG00000035086) #10	ATP6V0A2 (ENSPCIG00000010966) #11	TCTN2 (ENSPCIG00000010968) #12	GTF2H3 (ENSPCIG00000010970) #13	EIF2B1 (ENSPCIG00000010972) #14	DDX55 (ENSPCIG00000010973) #15	ENSPCIG00000010974 #16	RILPL1 (ENSPCIG00000010977) #17	SNRNP35 (ENSPCIG00000010978) #18	RILPL2 (ENSPCIG00000010980) #19	ENSPCIG00000010982	SBNO1 (ENSPCIG00000010985) #21	ENSPCIG00000010995 #22	MTRFR (ENSPCIG00000010996) #23	MPHOSPH9 (ENSPCIG00000011001) #24	ENSPCIG00000032005 #25	ENSPCIG00000010621 #25	ARL6IP4 (ENSPCIG00000003197) #26	OGFOD2 (ENSPCIG00000028675) #27	ENSPCIG00000028674	ABCB9 (ENSPCIG00000028673) #28	VPS37B (ENSPCIG00000028672) #29	HIP1R (ENSPCIG00000028671) #30	CCDC62 (ENSPCIG00000033520) #31	DENR (ENSPCIG00000022523) #32	HCAR1 (ENSPCIG00000028669) #33	ENSPCIG00000028667 #34	KNTC1 (ENSPCIG00000028666) #35
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	637	NCOR2 (ENSVURG00010000254)	RFLNA (ENSVURG00010000460) #7	CCDC92 (ENSVURG00010000473) #9	DNAH10 (ENSVURG00010000585) #10	ATP6V0A2 (ENSVURG00010001362) #11	TCTN2 (ENSVURG00010001432) #12	GTF2H3 (ENSVURG00010001889) #13	EIF2B1 (ENSVURG00010001914) #14	DDX55 (ENSVURG00010001939) #15	TMED2 (ENSVURG00010002043) #16	RILPL1 (ENSVURG00010002058) #17	ENSVURG00010002067 #18	RILPL2 (ENSVURG00010002076) #19	ENSVURG00010002098	SBNO1 (ENSVURG00010002171) #21	CDK2AP1 (ENSVURG00010002388) #22	ENSVURG00010002405 #23	MPHOSPH9 (ENSVURG00010002429) #24	PITPNM2 (ENSVURG00010002512) #25	ENSVURG00010002633 #26	ENSVURG00010002655 #27	ENSVURG00010002710	ABCB9 (ENSVURG00010002723) #28	VPS37B (ENSVURG00010002761) #29	HIP1R (ENSVURG00010002771) #30	CCDC62 (ENSVURG00010002816) #31	DENR (ENSVURG00010002852) #32	ENSVURG00010002866 #34	KNTC1 (ENSVURG00010002895) #35	RSRC2 (ENSVURG00010002985) #36	ZCCHC8 (ENSVURG00010003005) #37
Common wonbat	MODERN SPECIES	1122	ENSVURG00010023572	AKAP5 (ENSVURG00010023540)	ZBTB25 (ENSVURG00010023539)	ZBTB1 (ENSVURG00010023538)	HSPA2 (ENSVURG00010023536)	ENSVURG00010023535	PLEKHG3 (ENSVURG00010023529)	SPTB (ENSVURG00010023518)	CHURC1 (ENSVURG00010023517)	GPX2 (ENSVURG00010023516)	RAB15 (ENSVURG00010023515)	FNTB (ENSVURG00010023513)	MAX (ENSVURG00010023508)	FUT8 (ENSVURG00010023503)	ENSVURG00010023501	ENSVURG00010023497 #22	ENSVURG00010023488	ENSVURG00010023486	ENSVURG00010023484	ENSVURG00010023482	GPHN (ENSVURG00010023476)	PALS1 (ENSVURG00010023468)	ATP6V1D (ENSVURG00010023460)	EIF2S1 (ENSVURG00010023458)	PLEK2 (ENSVURG00010023453)	TMEM229B (ENSVURG00010023450)	PLEKHH1 (ENSVURG00010023421)	PIGH (ENSVURG00010023409)	ARG2 (ENSVURG00010023408)	VTI1B (ENSVURG00010023404)	RDH11 (ENSVURG00010023402)
Platypus	MODERN SPECIES	11	ENSOANG00000015322	CCDC92 (ENSOANG00000047467) #9	ENSOANG00000044145 #10	ENSOANG00000041666 #11	ENSOANG00000015326 #11	TCTN2 (ENSOANG00000015328) #12	GTF2H3 (ENSOANG00000015329) #13	EIF2B1 (ENSOANG00000015331) #14	DDX55 (ENSOANG00000015332) #15	TMED2 (ENSOANG00000041285) #16	RILPL1 (ENSOANG00000028489) #17	SNRNP35 (ENSOANG00000002697) #18	RILPL2 (ENSOANG00000010165) #19	ENSOANG00000045421	SBNO1 (ENSOANG00000005063) #21	CDK2AP1 (ENSOANG00000036998) #22	C12orf65 (ENSOANG00000043205) #23	MPHOSPH9 (ENSOANG00000012865) #24	PITPNM2 (ENSOANG00000022544) #25	ARL6IP4 (ENSOANG00000010564) #26	OGFOD2 (ENSOANG00000046325) #27	ABCB9 (ENSOANG00000009131) #28	VPS37B (ENSOANG00000006184) #29	HIP1R (ENSOANG00000006185) #30	ENSOANG00000004284 #31	DENR (ENSOANG00000011417) #32	HCAR1 (ENSOANG00000006190) #33	ENSOANG00000006192 #34	KNTC1 (ENSOANG00000006193) #35	ENSOANG00000050308	RSRC2 (ENSOANG00000006196) #36
Sauria	ANCESTRAL SPECIES	11	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00990000214084	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018
Archelosauria	ANCESTRAL SPECIES	14	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00990000214084	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D
Cryptodira	ANCESTRAL SPECIES	28	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00990000214084	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D
Chinese turtle	MODERN SPECIES	339										ENSPSIG00000008770	ENSPSIG00000009014	SNRNP35 (ENSPSIG00000000450) #18	RILPL2 (ENSPSIG00000009227) #19	ENSPSIG00000009479	ENSPSIG00000009572 #21	CDK2AP1 (ENSPSIG00000012999) #22	MTRFR (ENSPSIG00000013010) #23	MPHOSPH9 (ENSPSIG00000013960) #24	ENSPSIG00000014112 #25	ARL6IP4 (ENSPSIG00000014720) #26	OGFOD2 (ENSPSIG00000015093) #27	ENSPSIG00000015355	ABCB9 (ENSPSIG00000015471) #28	ENSPSIG00000015740 #29	HIP1R (ENSPSIG00000015745) #30
Testudinoidea	ANCESTRAL SPECIES	26	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00990000214084	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D
Emydidae	ANCESTRAL SPECIES	37	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00990000214084	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D
painted turtle	MODERN SPECIES	2406	NCOR2 (ENSCPBG00000025101)	RFLNA (ENSCPBG00000025941) #7	CCDC92 (ENSCPBG00000025944) #9	DNAH10 (ENSCPBG00000025955) #10	ATP6V0A2 (ENSCPBG00000025956) #11	TCTN2 (ENSCPBG00000025957) #12	GTF2H3 (ENSCPBG00000025958) #13	EIF2B1 (ENSCPBG00000025959) #14	DDX55 (ENSCPBG00000025960) #15	TMED2 (ENSCPBG00000025962) #16	RILPL1 (ENSCPBG00000025964) #17	SNRNP35 (ENSCPBG00000025965) #18	RILPL2 (ENSCPBG00000025966) #19	ENSCPBG00000025967	SBNO1 (ENSCPBG00000025968) #21	CDK2AP1 (ENSCPBG00000025969) #22	MTRFR (ENSCPBG00000025970) #23	MPHOSPH9 (ENSCPBG00000025972) #24	PITPNM2 (ENSCPBG00000025973) #25	ARL6IP4 (ENSCPBG00000025976) #26	OGFOD2 (ENSCPBG00000025977) #27	ENSCPBG00000025978	ABCB9 (ENSCPBG00000025979) #28	VPS37B (ENSCPBG00000025981) #29	HIP1R (ENSCPBG00000025990) #30	CCDC62 (ENSCPBG00000026014) #31	DENR (ENSCPBG00000026018) #32	GPN3 (ENSCPBG00000026020)	ARPC3 (ENSCPBG00000026022)	ANAPC7 (ENSCPBG00000026024)	ATP2A2 (ENSCPBG00000026028)
Three-toed box turtle	MODERN SPECIES	109	NCOR2 (ENSTMTG00000019704)	RFLNA (ENSTMTG00000019563) #7	CCDC92 (ENSTMTG00000019542) #9	DNAH10 (ENSTMTG00000019015) #10	ATP6V0A2 (ENSTMTG00000018645) #11	TCTN2 (ENSTMTG00000018599) #12	GTF2H3 (ENSTMTG00000018553) #13	EIF2B1 (ENSTMTG00000018531) #14	DDX55 (ENSTMTG00000018499) #15	TMED2 (ENSTMTG00000018490) #16	RILPL1 (ENSTMTG00000018476) #17	SNRNP35 (ENSTMTG00000018468) #18	RILPL2 (ENSTMTG00000018460) #19	ENSTMTG00000018436	SBNO1 (ENSTMTG00000018374) #21	CDK2AP1 (ENSTMTG00000018331) #22	MTRFR (ENSTMTG00000018320) #23	MPHOSPH9 (ENSTMTG00000018025) #24	PITPNM2 (ENSTMTG00000017907) #25	ARL6IP4 (ENSTMTG00000017890) #26	OGFOD2 (ENSTMTG00000017879) #27	ENSTMTG00000017866	ENSTMTG00000017854	ABCB9 (ENSTMTG00000017795) #28	VPS37B (ENSTMTG00000017779) #29	HIP1R (ENSTMTG00000017747) #30	CCDC62 (ENSTMTG00000017695) #31	DENR (ENSTMTG00000017681) #32	GPN3 (ENSTMTG00000017661)	ARPC3 (ENSTMTG00000017640)	ANAPC7 (ENSTMTG00000017621)
Testudinidae	ANCESTRAL SPECIES	32	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986
Abingdon island giant tortoise	MODERN SPECIES	2151	CCDC92 (ENSCABG00000007647) #9	ENSCABG00000007652 #10	ENSCABG00000007655 #10	ATP6V0A2 (ENSCABG00000007662) #11	TCTN2 (ENSCABG00000007669) #12	ENSCABG00000007674 #13	ENSCABG00000007675 #13	EIF2B1 (ENSCABG00000007678) #14	DDX55 (ENSCABG00000007682) #15	TMED2 (ENSCABG00000007686) #16	RILPL1 (ENSCABG00000007687) #17	SNRNP35 (ENSCABG00000007688) #18	RILPL2 (ENSCABG00000007689) #19	ENSCABG00000007704	SBNO1 (ENSCABG00000007706) #21	CDK2AP1 (ENSCABG00000007715) #22	MTRFR (ENSCABG00000007723) #23	MPHOSPH9 (ENSCABG00000007733) #24	PITPNM2 (ENSCABG00000007773) #25	ARL6IP4 (ENSCABG00000007779) #26	OGFOD2 (ENSCABG00000007780) #27	ENSCABG00000007783	ABCB9 (ENSCABG00000007787) #28	VPS37B (ENSCABG00000007837) #29	HIP1R (ENSCABG00000007839) #30	DENR (ENSCABG00000007840) #32	GPN3 (ENSCABG00000007841)	ARPC3 (ENSCABG00000007842)	ANAPC7 (ENSCABG00000007843)	ATP2A2 (ENSCABG00000007947)	IFT81 (ENSCABG00000013074)
Goode s thornscrub tortoise	MODERN SPECIES	4	NCOR2 (ENSGEVG00005015378)	RFLNA (ENSGEVG00005013898) #7	CCDC92 (ENSGEVG00005013818) #9	DNAH10 (ENSGEVG00005013124) #10	ATP6V0A2 (ENSGEVG00005013025) #11	TCTN2 (ENSGEVG00005012921) #12	GTF2H3 (ENSGEVG00005012876) #13	EIF2B1 (ENSGEVG00005012841) #14	DDX55 (ENSGEVG00005012807) #15	TMED2 (ENSGEVG00005012777) #16	RILPL1 (ENSGEVG00005012747) #17	SNRNP35 (ENSGEVG00005012674) #18	RILPL2 (ENSGEVG00005012654) #19	ENSGEVG00005012605	SBNO1 (ENSGEVG00005012475) #21	CDK2AP1 (ENSGEVG00005012429) #22	MTRFR (ENSGEVG00005012400) #23	MPHOSPH9 (ENSGEVG00005012286) #24	PITPNM2 (ENSGEVG00005012022) #25	ARL6IP4 (ENSGEVG00005011962) #26	OGFOD2 (ENSGEVG00005011936) #27	ENSGEVG00005011917	ABCB9 (ENSGEVG00005011872) #28	VPS37B (ENSGEVG00005011831) #29	HIP1R (ENSGEVG00005011430) #30	CCDC62 (ENSGEVG00005011339) #31	DENR (ENSGEVG00005011302) #32	GPN3 (ENSGEVG00005011279)	ARPC3 (ENSGEVG00005011257)	ANAPC7 (ENSGEVG00005011232)	ATP2A2 (ENSGEVG00005011191)
Archosauria	ANCESTRAL SPECIES	19	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986
Australian saltwater crocodile	MODERN SPECIES	40	RFLNA (ENSCPRG00005018103) #7	CCDC92 (ENSCPRG00005018097) #9	DNAH10 (ENSCPRG00005018036) #10	ATP6V0A2 (ENSCPRG00005018005) #11	TCTN2 (ENSCPRG00005017998) #12	GTF2H3 (ENSCPRG00005017992) #13	ENSCPRG00005017989	EIF2B1 (ENSCPRG00005017912) #14	DDX55 (ENSCPRG00005017774) #15	TMED2 (ENSCPRG00005017738) #16	RILPL1 (ENSCPRG00005017734) #17	SNRNP35 (ENSCPRG00005017729) #18	RILPL2 (ENSCPRG00005017728) #19	ENSCPRG00005017724	SBNO1 (ENSCPRG00005017323) #21	CDK2AP1 (ENSCPRG00005017247) #22	MTRFR (ENSCPRG00005017244) #23	MPHOSPH9 (ENSCPRG00005017209) #24	PITPNM2 (ENSCPRG00005017186) #25	ARL6IP4 (ENSCPRG00005017177) #26	OGFOD2 (ENSCPRG00005017172) #27	ENSCPRG00005017166	ABCB9 (ENSCPRG00005017161) #28	VPS37B (ENSCPRG00005017158) #29	HIP1R (ENSCPRG00005016802) #30	CCDC62 (ENSCPRG00005016649) #31	FAM222A (ENSCPRG00005016647)	MVK (ENSCPRG00005016641)	MMAB (ENSCPRG00005016630)	UBE3B (ENSCPRG00005016619)	KCTD10 (ENSCPRG00005016612)
Aves	ANCESTRAL SPECIES	19	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986
African ostrich	MODERN SPECIES	320	SCARB1 (ENSSCUG00000003816)	RFLNA (ENSSCUG00000003807) #7	CCDC92 (ENSSCUG00000003795) #9	DNAH10 (ENSSCUG00000003777) #10	ATP6V0A2 (ENSSCUG00000003770) #11	TCTN2 (ENSSCUG00000003769) #12	GTF2H3 (ENSSCUG00000003768) #13	EIF2B1 (ENSSCUG00000003765) #14	DDX55 (ENSSCUG00000003764) #15	TMED2 (ENSSCUG00000003762) #16	RILPL1 (ENSSCUG00000003760) #17	SNRNP35 (ENSSCUG00000003758) #18	RILPL2 (ENSSCUG00000003756) #19	ENSSCUG00000003755	SBNO1 (ENSSCUG00000003751) #21	CDK2AP1 (ENSSCUG00000003747) #22	MTRFR (ENSSCUG00000003744) #23	MPHOSPH9 (ENSSCUG00000003727) #24	PITPNM2 (ENSSCUG00000003716) #25	ARL6IP4 (ENSSCUG00000003714) #26	OGFOD2 (ENSSCUG00000003712) #27	ENSSCUG00000003711	ENSSCUG00000003710 #28	VPS37B (ENSSCUG00000003708) #29	CCDC62 (ENSSCUG00000003705) #31	DENR (ENSSCUG00000003703) #32	GPN3 (ENSSCUG00000003702)	ARPC3 (ENSSCUG00000003700)	ANAPC7 (ENSSCUG00000003699)	ATP2A2 (ENSSCUG00000003688)	IFT81 (ENSSCUG00000003656)
Neognathae	ANCESTRAL SPECIES	15	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986
Galloanserae	DUPLICATION
Galloanserae	DUPLICATION
Galloanserae	ANCESTRAL SPECIES	13	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149.dc.a #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986
Anatidae	ANCESTRAL SPECIES	25	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149.dc.a #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986	ENSGT00390000000999
Duck	MODERN SPECIES	7	NCOR2 (ENSAPLG00000013606)	RFLNA (ENSAPLG00000013994) #7	CCDC92 (ENSAPLG00000014106) #9	DNAH10 (ENSAPLG00000014113) #10	ATP6V0A2 (ENSAPLG00000014518) #11	TCTN2 (ENSAPLG00000014650) #12	GTF2H3 (ENSAPLG00000014734) #13	EIF2B1 (ENSAPLG00000014771) #14	DDX55 (ENSAPLG00000015032) #15	TMED2 (ENSAPLG00000015561) #16	RILPL1 (ENSAPLG00000025541) #17	RILPL2 (ENSAPLG00000015655) #19	SNRNP35 (ENSAPLG00000015654) #18	ENSAPLG00000023009	SBNO1 (ENSAPLG00000015674) #21	ENSAPLG00000024296 #22	MTRFR (ENSAPLG00000016073) #23	MPHOSPH9 (ENSAPLG00000016075) #24	PITPNM2 (ENSAPLG00000016158) #25	ARL6IP4 (ENSAPLG00000023108) #26	OGFOD2 (ENSAPLG00000001967) #27	ABCB9 (ENSAPLG00000002402) #28	VPS37B (ENSAPLG00000023690) #29	HIP1R (ENSAPLG00000002663) #30	ENSAPLG00000003594 #31	DENR (ENSAPLG00000003750) #32	GPN3 (ENSAPLG00000003776)	ARPC3 (ENSAPLG00000004006)	ANAPC7 (ENSAPLG00000004360)	ATP2A2 (ENSAPLG00000004659)	IFT81 (ENSAPLG00000001267)
Pink-footed goose	MODERN SPECIES	68	NCOR2 (ENSABRG00000003527)	RFLNA (ENSABRG00000008159) #7	CCDC92 (ENSABRG00000008165) #9	DNAH10 (ENSABRG00000008181) #10	ATP6V0A2 (ENSABRG00000008499) #11	TCTN2 (ENSABRG00000008651) #12	GTF2H3 (ENSABRG00000008672) #13	DDX55 (ENSABRG00000008757) #15	EIF2B1 (ENSABRG00000009277) #14	TMED2 (ENSABRG00000009368) #16	RILPL1 (ENSABRG00000009425) #17	RILPL2 (ENSABRG00000009511) #19	SNRNP35 (ENSABRG00000009532) #18	KMT5A (ENSABRG00000009537) #20	SBNO1 (ENSABRG00000009747) #21	CDK2AP1 (ENSABRG00000011947) #22	MTRFR (ENSABRG00000011966) #23	MPHOSPH9 (ENSABRG00000012027) #24	PITPNM2 (ENSABRG00000012355) #25	ARL6IP4 (ENSABRG00000012861) #26	OGFOD2 (ENSABRG00000012878) #27	ABCB9 (ENSABRG00000012906) #28	VPS37B (ENSABRG00000012950) #29	HIP1R (ENSABRG00000012954) #30	ENSABRG00000012959	DENR (ENSABRG00000012961) #32	GPN3 (ENSABRG00000012963)	ARPC3 (ENSABRG00000012973)	ANAPC7 (ENSABRG00000012991)	ATP2A2 (ENSABRG00000013067)	IFT81 (ENSABRG00000013596)
Phasianidae	ANCESTRAL SPECIES																	ENSGT00940000155149.dc.a #22
Japanese quail	MODERN SPECIES	6	RFLNA (ENSCJPG00005019839) #7	CCDC92 (ENSCJPG00005019843) #9	DNAH10 (ENSCJPG00005019851) #10	ATP6V0A2 (ENSCJPG00005019861) #11	TCTN2 (ENSCJPG00005019907) #12	GTF2H3 (ENSCJPG00005019908) #13	ENSCJPG00005019909	EIF2B1 (ENSCJPG00005019910) #14	DDX55 (ENSCJPG00005019917) #15	TMED2 (ENSCJPG00005019921) #16	RILPL1 (ENSCJPG00005019922) #17	SNRNP35 (ENSCJPG00005019924) #18	RILPL2 (ENSCJPG00005019925) #19	ENSCJPG00005019926	SBNO1 (ENSCJPG00005019929) #21	CDK2AP1 (ENSCJPG00005019964) #22	MTRFR (ENSCJPG00005019965) #23	MPHOSPH9 (ENSCJPG00005019966) #24	PITPNM2 (ENSCJPG00005020065) #25	ARL6IP4 (ENSCJPG00005020108) #26	OGFOD2 (ENSCJPG00005020110) #27	ABCB9 (ENSCJPG00005020111) #28	VPS37B (ENSCJPG00005020138) #29	HIP1R (ENSCJPG00005020140) #30	DENR (ENSCJPG00005020188) #32	GPN3 (ENSCJPG00005020189)	ARPC3 (ENSCJPG00005020190)	ANAPC7 (ENSCJPG00005020191)	ATP2A2 (ENSCJPG00005020192)	IFT81 (ENSCJPG00005020462)	P2RX7 (ENSCJPG00005020465)
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000155149.dc.b #22
Anatidae	ANCESTRAL SPECIES																	ENSGT00940000155149.dc.b #22
Duck	MODERN SPECIES	35													ENSAPLG00000007625	ENSAPLG00000007558	ENSAPLG00000007334	ENSAPLG00000028103 #22	DPP7 (ENSAPLG00000006425)	MAN1B1 (ENSAPLG00000006155)	ENSAPLG00000020451	UAP1L1 (ENSAPLG00000005633)
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000155149.ec #22
Phasianidae	ANCESTRAL SPECIES	13	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149.ec #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986	ENSGT00390000000999
Phasianidae_b	ANCESTRAL SPECIES	13	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149.ec #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986	ENSGT00390000000999
Turkey	MODERN SPECIES	8	SCARB1 (ENSMGAG00000002675)	NCOR2 (ENSMGAG00000016513)	RFLNA (ENSMGAG00000019946) #7	CCDC92 (ENSMGAG00000003072) #9	DNAH10 (ENSMGAG00000018233) #10	ATP6V0A2 (ENSMGAG00000003079) #11	TCTN2 (ENSMGAG00000003096) #12	GTF2H3 (ENSMGAG00000003111) #13	EIF2B1 (ENSMGAG00000003131) #14	DDX55 (ENSMGAG00000003185) #15	TMED2 (ENSMGAG00000022416) #16	RILPL1 (ENSMGAG00000003217) #17	ENSMGAG00000003241	RILPL2 (ENSMGAG00000003047) #19	SBNO1 (ENSMGAG00000003274) #21	CDK2AP1 (ENSMGAG00000003341) #22	MTRFR (ENSMGAG00000003354) #23	MPHOSPH9 (ENSMGAG00000003370) #24	PITPNM2 (ENSMGAG00000003421) #25	ARL6IP4 (ENSMGAG00000003506) #26	OGFOD2 (ENSMGAG00000003521) #27	ENSMGAG00000003532	ABCB9 (ENSMGAG00000003541) #28	VPS37B (ENSMGAG00000019147) #29	HIP1R (ENSMGAG00000003583) #30	DENR (ENSMGAG00000003720) #32	GPN3 (ENSMGAG00000003760)	ARPC3 (ENSMGAG00000003776)	ANAPC7 (ENSMGAG00000003793)	ATP2A2 (ENSMGAG00000003826)	IFT81 (ENSMGAG00000003971)
Chicken	MODERN SPECIES	6	NCOR2 (ENSGALG00010024649)	RFLNA (ENSGALG00010024653) #7	CCDC92 (ENSGALG00010024654) #9	DNAH10 (ENSGALG00010024664) #10	ATP6V0A2 (ENSGALG00010024681) #11	TCTN2 (ENSGALG00010024691) #12	GTF2H3 (ENSGALG00010024694) #13	EIF2B1 (ENSGALG00010024701) #14	DDX55 (ENSGALG00010024711) #15	TMED2 (ENSGALG00010024726) #16	RILPL1 (ENSGALG00010027012) #17	SNRNP35 (ENSGALG00010024765) #18	RILPL2 (ENSGALG00010024741) #19	ENSGALG00010024800	SBNO1 (ENSGALG00010024812) #21	CDK2AP1 (ENSGALG00010024850) #22	C12orf65 (ENSGALG00010024854) #23	MPHOSPH9 (ENSGALG00010024864) #24	PITPNM2 (ENSGALG00010024888) #25	ARL6IP4 (ENSGALG00010024893) #26	OGFOD2 (ENSGALG00010024899) #27	ENSGALG00010024908	ABCB9 (ENSGALG00010024943) #28	VPS37B (ENSGALG00010024956) #29	HIP1R (ENSGALG00010025005) #30	DENR (ENSGALG00010025026) #32	GPN3 (ENSGALG00010025064)	ARPC3 (ENSGALG00010025102)	ANAPC7 (ENSGALG00010025116)	ATP2A2 (ENSGALG00010025130)	IFT81 (ENSGALG00010025149)
Neognathae_b	ANCESTRAL SPECIES	27	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986
Passeriformes	ANCESTRAL SPECIES	15	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986
Great tit	MODERN SPECIES	6	NCOR2 (ENSPMJG00000001559)	RFLNA (ENSPMJG00000001591) #7	CCDC92 (ENSPMJG00000001602) #9	DNAH10 (ENSPMJG00000001620) #10	ATP6V0A2 (ENSPMJG00000002716) #11	TCTN2 (ENSPMJG00000002717) #12	GTF2H3 (ENSPMJG00000002720) #13	EIF2B1 (ENSPMJG00000002721) #14	DDX55 (ENSPMJG00000002723) #15	TMED2 (ENSPMJG00000003164) #16	RILPL1 (ENSPMJG00000003165) #17	SNRNP35 (ENSPMJG00000003168) #18	RILPL2 (ENSPMJG00000003169) #19	ENSPMJG00000003197	SBNO1 (ENSPMJG00000003204) #21	CDK2AP1 (ENSPMJG00000003211) #22	MTRFR (ENSPMJG00000003214) #23	MPHOSPH9 (ENSPMJG00000003295) #24	PITPNM2 (ENSPMJG00000003331) #25	ARL6IP4 (ENSPMJG00000003411) #26	ENSPMJG00000003429	ABCB9 (ENSPMJG00000003438) #28	VPS37B (ENSPMJG00000003508) #29	HIP1R (ENSPMJG00000003510) #30	CCDC62 (ENSPMJG00000003515) #31	DENR (ENSPMJG00000003520) #32	GPN3 (ENSPMJG00000003528)	ARPC3 (ENSPMJG00000003530)	ANAPC7 (ENSPMJG00000003531)	ATP2A2 (ENSPMJG00000003569)	IFT81 (ENSPMJG00000003581)
Passeriformes_d	ANCESTRAL SPECIES	14	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986
Flycatcher	MODERN SPECIES	6	NCOR2 (ENSFALG00000009368)	RFLNA (ENSFALG00000027538) #7	CCDC92 (ENSFALG00000009355) #9	DNAH10 (ENSFALG00000009339) #10	ATP6V0A2 (ENSFALG00000009325) #11	TCTN2 (ENSFALG00000009321) #12	GTF2H3 (ENSFALG00000009313) #13	EIF2B1 (ENSFALG00000026227) #14	DDX55 (ENSFALG00000023346) #15	TMED2 (ENSFALG00000009296) #16	RILPL1 (ENSFALG00000009290) #17	SNRNP35 (ENSFALG00000014650) #18	RILPL2 (ENSFALG00000009281) #19	ENSFALG00000009276	SBNO1 (ENSFALG00000009273) #21	CDK2AP1 (ENSFALG00000029083) #22	MTRFR (ENSFALG00000009261) #23	MPHOSPH9 (ENSFALG00000009255) #24	PITPNM2 (ENSFALG00000009253) #25	ARL6IP4 (ENSFALG00000009250) #26	OGFOD2 (ENSFALG00000009247) #27	ENSFALG00000009246	ABCB9 (ENSFALG00000009244) #28	VPS37B (ENSFALG00000028314) #29	HIP1R (ENSFALG00000009240) #30	ENSFALG00000009236 #31	DENR (ENSFALG00000009235) #32	GPN3 (ENSFALG00000009228)	ARPC3 (ENSFALG00000009222)	ANAPC7 (ENSFALG00000009220)	ATP2A2 (ENSFALG00000009206)
Passeriformes_g	ANCESTRAL SPECIES	14	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986
Medium ground finch	MODERN SPECIES	65	RFLNA (ENSGFOG00000005116) #7	CCDC92 (ENSGFOG00000005124) #9	ENSGFOG00000005134 #10	ENSGFOG00000005147 #10	ENSGFOG00000005166 #10	ATP6V0A2 (ENSGFOG00000005186) #11	ENSGFOG00000005202 #12	GTF2H3 (ENSGFOG00000005209) #13	EIF2B1 (ENSGFOG00000005223) #14	DDX55 (ENSGFOG00000005232) #15	TMED2 (ENSGFOG00000005243) #16	RILPL1 (ENSGFOG00000005251) #17	SNRNP35 (ENSGFOG00000005263) #18	ENSGFOG00000005269	SBNO1 (ENSGFOG00000005290) #21	CDK2AP1 (ENSGFOG00000000253) #22	MTRFR (ENSGFOG00000000257) #23	MPHOSPH9 (ENSGFOG00000000265) #24	PITPNM2 (ENSGFOG00000000294) #25	ARL6IP4 (ENSGFOG00000000338) #26	OGFOD2 (ENSGFOG00000000349) #27	ENSGFOG00000000355	ABCB9 (ENSGFOG00000000368) #28	VPS37B (ENSGFOG00000000387) #29	HIP1R (ENSGFOG00000000413) #30	CCDC62 (ENSGFOG00000000460) #31	DENR (ENSGFOG00000000484) #32	GPN3 (ENSGFOG00000000498)	ARPC3 (ENSGFOG00000000544)	ANAPC7 (ENSGFOG00000000552)	ATP2A2 (ENSGFOG00000000571)
Passeroidea	ANCESTRAL SPECIES	14	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986
Zebra finch	MODERN SPECIES	6	NCOR2 (ENSTGUG00000005023)	RFLNA (ENSTGUG00000024452) #7	CCDC92 (ENSTGUG00000025395) #9	DNAH10 (ENSTGUG00000005101) #10	ATP6V0A2 (ENSTGUG00000005182) #11	TCTN2 (ENSTGUG00000005251) #12	GTF2H3 (ENSTGUG00000005281) #13	EIF2B1 (ENSTGUG00000005283) #14	DDX55 (ENSTGUG00000005302) #15	TMED2 (ENSTGUG00000028027) #16	RILPL1 (ENSTGUG00000005356) #17	SNRNP35 (ENSTGUG00000005364) #18	RILPL2 (ENSTGUG00000005368) #19	ENSTGUG00000022332	SBNO1 (ENSTGUG00000005380) #21	CDK2AP1 (ENSTGUG00000005436) #22	MTRFR (ENSTGUG00000022532) #23	MPHOSPH9 (ENSTGUG00000005443) #24	PITPNM2 (ENSTGUG00000005473) #25	ARL6IP4 (ENSTGUG00000020071) #26	OGFOD2 (ENSTGUG00000026423) #27	ENSTGUG00000005522	ABCB9 (ENSTGUG00000005532) #28	VPS37B (ENSTGUG00000028060) #29	HIP1R (ENSTGUG00000005574) #30	CCDC62 (ENSTGUG00000005664) #31	DENR (ENSTGUG00000005674) #32	GPN3 (ENSTGUG00000005686)	ARPC3 (ENSTGUG00000005696)	ANAPC7 (ENSTGUG00000005711)	ATP2A2 (ENSTGUG00000005728)
Common canary	MODERN SPECIES	18	NCOR2 (ENSSCAG00000009955)	RFLNA (ENSSCAG00000009815) #7	CCDC92 (ENSSCAG00000009810) #9	ENSSCAG00000009805 #10	ENSSCAG00000009789 #10	ATP6V0A2 (ENSSCAG00000009780) #11	TCTN2 (ENSSCAG00000009775) #12	GTF2H3 (ENSSCAG00000009771) #13	EIF2B1 (ENSSCAG00000009764) #14	DDX55 (ENSSCAG00000009761) #15	TMED2 (ENSSCAG00000009758) #16	RILPL1 (ENSSCAG00000009749) #17	RILPL2 (ENSSCAG00000009739) #19	ENSSCAG00000009734	SBNO1 (ENSSCAG00000009722) #21	CDK2AP1 (ENSSCAG00000009720) #22	MTRFR (ENSSCAG00000009714) #23	MPHOSPH9 (ENSSCAG00000009695) #24	PITPNM2 (ENSSCAG00000009669) #25	ARL6IP4 (ENSSCAG00000009656) #26	OGFOD2 (ENSSCAG00000009650) #27	ENSSCAG00000009648	ABCB9 (ENSSCAG00000009642) #28	VPS37B (ENSSCAG00000009634) #29	HIP1R (ENSSCAG00000009629) #30	CCDC62 (ENSSCAG00000009622) #31	DENR (ENSSCAG00000009620) #32	GPN3 (ENSSCAG00000009615)	ARPC3 (ENSSCAG00000009612)	ANAPC7 (ENSSCAG00000009607)	ATP2A2 (ENSSCAG00000009595)
Neognathae_c	ANCESTRAL SPECIES	16	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D	ENSGT00940000159986
Golden eagle	MODERN SPECIES	25	CCDC92 (ENSACCG00020000557) #9	ENSACCG00020000525 #10	ENSACCG00020000502 #10	ENSACCG00020000476 #10	ATP6V0A2 (ENSACCG00020000447) #11	TCTN2 (ENSACCG00020007716) #12	GTF2H3 (ENSACCG00020007671) #13	EIF2B1 (ENSACCG00020007650) #14	DDX55 (ENSACCG00020007617) #15	TMED2 (ENSACCG00020007592) #16	RILPL1 (ENSACCG00020007544) #17	SNRNP35 (ENSACCG00020007519) #18	RILPL2 (ENSACCG00020007503) #19	ENSACCG00020007460	SBNO1 (ENSACCG00020007327) #21	CDK2AP1 (ENSACCG00020007288) #22	MTRFR (ENSACCG00020007262) #23	MPHOSPH9 (ENSACCG00020007214) #24	PITPNM2 (ENSACCG00020007172) #25	ENSACCG00020007141	OGFOD2 (ENSACCG00020007117) #27	ENSACCG00020007098	ABCB9 (ENSACCG00020007072) #28	VPS37B (ENSACCG00020007048) #29	HIP1R (ENSACCG00020007013) #30	CCDC62 (ENSACCG00020006956) #31	DENR (ENSACCG00020006921) #32	GPN3 (ENSACCG00020006898)	ARPC3 (ENSACCG00020006881)	ANAPC7 (ENSACCG00020006861)	ATP2A2 (ENSACCG00020006830)
Kakapo	MODERN SPECIES	3	RFLNA (ENSSHBG00005009681) #7	ENSSHBG00005009672	CCDC92 (ENSSHBG00005009665) #9	DNAH10 (ENSSHBG00005009284) #10	ATP6V0A2 (ENSSHBG00005009157) #11	TCTN2 (ENSSHBG00005009114) #12	GTF2H3 (ENSSHBG00005009096) #13	EIF2B1 (ENSSHBG00005009085) #14	DDX55 (ENSSHBG00005008953) #15	TMED2 (ENSSHBG00005008915) #16	RILPL1 (ENSSHBG00005008900) #17	SNRNP35 (ENSSHBG00005008891) #18	RILPL2 (ENSSHBG00005008877) #19	ENSSHBG00005008861	SBNO1 (ENSSHBG00005008607) #21	CDK2AP1 (ENSSHBG00005008544) #22	MTRFR (ENSSHBG00005008536) #23	MPHOSPH9 (ENSSHBG00005008467) #24	PITPNM2 (ENSSHBG00005006474) #25	ARL6IP4 (ENSSHBG00005006088) #26	OGFOD2 (ENSSHBG00005006068) #27	ENSSHBG00005006038	ABCB9 (ENSSHBG00005006022) #28	VPS37B (ENSSHBG00005006009) #29	HIP1R (ENSSHBG00005005699) #30	CCDC62 (ENSSHBG00005005496) #31	DENR (ENSSHBG00005005460) #32	GPN3 (ENSSHBG00005005438)	ARPC3 (ENSSHBG00005000875)	ANAPC7 (ENSSHBG00005011434)	ATP2A2 (ENSSHBG00005011389)
Lepidosauria	ANCESTRAL SPECIES	13	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00990000214084	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018
tuatara	MODERN SPECIES	327	ENSSPUG00000013197	RFLNA (ENSSPUG00000013181) #7	ENSSPUG00000013164 #9	DNAH10 (ENSSPUG00000012999) #10	ATP6V0A2 (ENSSPUG00000012951) #11	TCTN2 (ENSSPUG00000012884) #12	GTF2H3 (ENSSPUG00000012852) #13	EIF2B1 (ENSSPUG00000012832) #14	DDX55 (ENSSPUG00000012798) #15	TMED2 (ENSSPUG00000012785) #16	RILPL1 (ENSSPUG00000012774) #17	SNRNP35 (ENSSPUG00000012768) #18	RILPL2 (ENSSPUG00000012762) #19	ENSSPUG00000012745	SBNO1 (ENSSPUG00000012640) #21	CDK2AP1 (ENSSPUG00000012619) #22	MTRFR (ENSSPUG00000012613) #23	ENSSPUG00000012588 #24	ENSSPUG00000012414 #24	PITPNM2 (ENSSPUG00000012372) #25	ARL6IP4 (ENSSPUG00000012348) #26	OGFOD2 (ENSSPUG00000012341) #27	ENSSPUG00000012333	ENSSPUG00000012320	ENSSPUG00000012292 #28	ENSSPUG00000012285 #28	VPS37B (ENSSPUG00000012268) #29	HIP1R (ENSSPUG00000012236) #30	CCDC62 (ENSSPUG00000012217) #31	DENR (ENSSPUG00000012205) #32	GPN3 (ENSSPUG00000012195)
Episquamata	ANCESTRAL SPECIES	10	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D
Toxicofera	ANCESTRAL SPECIES	11	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00990000212529	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D
Elapidae	ANCESTRAL SPECIES	23	ENSGT00390000010194	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00990000212529	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D.k
Elapidae_a	ANCESTRAL SPECIES	67	ENSGT00390000010194	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00990000212529	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D.k
Acanthophiinae	ANCESTRAL SPECIES	65	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00390000012759 #23	ENSGT00990000212529	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c.c #30	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D.k	ENSGT00940000159986
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	481																ENSPTXG00000017540 #22	ENSPTXG00000017541 #23	ENSPTXG00000017542	ENSPTXG00000017543 #24
Eastern brown snake	MODERN SPECIES	479																ENSPTXG00000017535 #22	ENSPTXG00000017536 #23	ENSPTXG00000017537	ENSPTXG00000017538 #24
Mainland tiger snake	MODERN SPECIES	315		ENSNSUG00000011248 #10	ENSNSUG00000011249 #10	ATP6V0A2 (ENSNSUG00000011252) #11	TCTN2 (ENSNSUG00000011588) #12	GTF2H3 (ENSNSUG00000011615) #13	ENSNSUG00000011619	EIF2B1 (ENSNSUG00000011621) #14	DDX55 (ENSNSUG00000011627) #15	TMED2 (ENSNSUG00000011789) #16	RILPL1 (ENSNSUG00000011791) #17	SNRNP35 (ENSNSUG00000011792) #18	RILPL2 (ENSNSUG00000011793) #19	ENSNSUG00000011795	SBNO1 (ENSNSUG00000011799) #21	CDK2AP1 (ENSNSUG00000011802) #22	ENSNSUG00000011804	MPHOSPH9 (ENSNSUG00000011805) #24	PITPNM2 (ENSNSUG00000011810) #25	ARL6IP4 (ENSNSUG00000012021) #26	OGFOD2 (ENSNSUG00000012022) #27	ABCB9 (ENSNSUG00000012023) #28	VPS37B (ENSNSUG00000012024) #29	HIP1R (ENSNSUG00000012039) #30	DENR (ENSNSUG00000014391) #32	GPN3 (ENSNSUG00000014392)	ARPC3 (ENSNSUG00000014393)	ANAPC7 (ENSNSUG00000014394)	ATP2A2 (ENSNSUG00000014395)
Blue-lipped sea krait	MODERN SPECIES	6927				ENSLLTG00000011235	ATP6V0A2 (ENSLLTG00000011191) #11	TCTN2 (ENSLLTG00000011097) #12	GTF2H3 (ENSLLTG00000011054) #13	EIF2B1 (ENSLLTG00000011021) #14	DDX55 (ENSLLTG00000011003) #15	TMED2 (ENSLLTG00000010976) #16	RILPL1 (ENSLLTG00000010928) #17	SNRNP35 (ENSLLTG00000010914) #18	RILPL2 (ENSLLTG00000010891) #19	ENSLLTG00000010847	SBNO1 (ENSLLTG00000010718) #21	CDK2AP1 (ENSLLTG00000010698) #22	MTRFR (ENSLLTG00000010683) #23	MPHOSPH9 (ENSLLTG00000010315) #24
Indian cobra	MODERN SPECIES	16	ENSNNAG00000016039	ENSNNAG00000016030	CCDC92 (ENSNNAG00000016021) #9	DNAH10 (ENSNNAG00000015200) #10	ATP6V0A2 (ENSNNAG00000014968) #11	TCTN2 (ENSNNAG00000014874) #12	GTF2H3 (ENSNNAG00000014837) #13	EIF2B1 (ENSNNAG00000014816) #14	DDX55 (ENSNNAG00000014766) #15	TMED2 (ENSNNAG00000014728) #16	RILPL1 (ENSNNAG00000014712) #17	ENSNNAG00000014702 #18	ENSNNAG00000014687 #19	ENSNNAG00000014663	SBNO1 (ENSNNAG00000011226) #21	CDK2AP1 (ENSNNAG00000011054) #22	MTRFR (ENSNNAG00000011042) #23	MPHOSPH9 (ENSNNAG00000010699) #24	PITPNM2 (ENSNNAG00000010208) #25	ARL6IP4 (ENSNNAG00000010150) #26	OGFOD2 (ENSNNAG00000018859) #27	ENSNNAG00000018858	ABCB9 (ENSNNAG00000018834) #28	VPS37B (ENSNNAG00000018825) #29	HIP1R (ENSNNAG00000018816) #30	CCDC62 (ENSNNAG00000018812) #31	DENR (ENSNNAG00000018809) #32	GPN3 (ENSNNAG00000018803)	ARPC3 (ENSNNAG00000018799)	ANAPC7 (ENSNNAG00000018794)	ATP2A2 (ENSNNAG00000018768)
Lizard	MODERN SPECIES	802	RFLNA (ENSACAG00000015091) #7	CCDC92 (ENSACAG00000035295) #9	DNAH10 (ENSACAG00000015099) #10	ATP6V0A2 (ENSACAG00000015204) #11	TCTN2 (ENSACAG00000045250) #12	GTF2H3 (ENSACAG00000040173) #13	ENSACAG00000045412	EIF2B1 (ENSACAG00000035138) #14	DDX55 (ENSACAG00000015296) #15	TMED2 (ENSACAG00000036452) #16	RILPL1 (ENSACAG00000015406) #17	SNRNP35 (ENSACAG00000015421) #18	RILPL2 (ENSACAG00000015423) #19	ENSACAG00000015432	SBNO1 (ENSACAG00000015441) #21	CDK2AP1 (ENSACAG00000036060) #22	MTRFR (ENSACAG00000015561) #23	ENSACAG00000036300	MPHOSPH9 (ENSACAG00000015563) #24	PITPNM2 (ENSACAG00000015611) #25	ARL6IP4 (ENSACAG00000015676) #26	OGFOD2 (ENSACAG00000015687) #27	ENSACAG00000029360	ABCB9 (ENSACAG00000015701) #28	ENSACAG00000015762	HIP1R (ENSACAG00000015788) #30	ENSACAG00000016012 #32	GPN3 (ENSACAG00000016016)	ARPC3 (ENSACAG00000016040)	ANAPC7 (ENSACAG00000016062)	ATP2A2 (ENSACAG00000016106)
Laterata	ANCESTRAL SPECIES	12	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897.d #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00950000185404	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00950000183172.A	ENSGT00390000018018	ENSGT00950000182950.D
Common wall lizard	MODERN SPECIES	7	RNF34 (ENSPMRG00000017940)	ENSPMRG00000017953	ENSPMRG00000018005	ENSPMRG00000018008	TCTN2 (ENSPMRG00000018018) #12	GTF2H3 (ENSPMRG00000018057) #13	EIF2B1 (ENSPMRG00000018068) #14	DDX55 (ENSPMRG00000018079) #15	TMED2 (ENSPMRG00000018088) #16	RILPL1 (ENSPMRG00000018100) #17	SNRNP35 (ENSPMRG00000018112) #18	RILPL2 (ENSPMRG00000018116) #19	ENSPMRG00000018122	ENSPMRG00000018129	ENSPMRG00000018138 #21	CDK2AP1 (ENSPMRG00000020663) #22	MTRFR (ENSPMRG00000020675) #23	ENSPMRG00000020680	MPHOSPH9 (ENSPMRG00000020686) #24	ENSPMRG00000020698	ENSPMRG00000020705 #21	PITPNM2 (ENSPMRG00000020801) #25	ARL6IP4 (ENSPMRG00000021120) #26	OGFOD2 (ENSPMRG00000021131) #27	ENSPMRG00000021137	ENSPMRG00000021145	ABCB9 (ENSPMRG00000021175) #28	VPS37B (ENSPMRG00000021336) #29	HIP1R (ENSPMRG00000021349) #30	CCDC62 (ENSPMRG00000021393) #31	ENSPMRG00000021431 #32
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	41	RFLNA (ENSSMRG00000018578) #7	CCDC92 (ENSSMRG00000018576) #9	DNAH10 (ENSSMRG00000018559) #10	ATP6V0A2 (ENSSMRG00000018557) #11	TCTN2 (ENSSMRG00000018554) #12	GTF2H3 (ENSSMRG00000018552) #13	EIF2B1 (ENSSMRG00000018551) #14	ENSSMRG00000018549	DDX55 (ENSSMRG00000018536) #15	TMED2 (ENSSMRG00000018535) #16	RILPL1 (ENSSMRG00000018533) #17	SNRNP35 (ENSSMRG00000018532) #18	RILPL2 (ENSSMRG00000018531) #19	ENSSMRG00000018530	SBNO1 (ENSSMRG00000018526) #21	ENSSMRG00000018525 #22	MTRFR (ENSSMRG00000018523) #23	MPHOSPH9 (ENSSMRG00000018521) #24	PITPNM2 (ENSSMRG00000018134) #25	ARL6IP4 (ENSSMRG00000018133) #26	MORC2 (ENSSMRG00000018131)	ENSSMRG00000018130	ENSSMRG00000018129	OSBP2 (ENSSMRG00000018126)	DUSP21 (ENSSMRG00000018123)	ENSSMRG00000018122	SLC35E4 (ENSSMRG00000018121)	TCN2 (ENSSMRG00000018120)	PES1 (ENSSMRG00000018118)	GAL3ST1 (ENSSMRG00000018116)	MTFP1 (ENSSMRG00000018114)
Argentine black and white tegu	MODERN SPECIES	4	PIEZO2 (ENSSMRG00000002185)	NAPG (ENSSMRG00000002158)	APCDD1 (ENSSMRG00000002117)	VAPA (ENSSMRG00000002104)	RAB31 (ENSSMRG00000002095)	PPP4R1 (ENSSMRG00000002081)	RALBP1 (ENSSMRG00000000378)	ENSSMRG00000000346	ANKRD12 (ENSSMRG00000000334)	ENSSMRG00000000320	ENSSMRG00000000311	ENSSMRG00000000290	NDUFV2 (ENSSMRG00000000263)	MTCL1 (ENSSMRG00000000059)	RAB12 (ENSSMRG00000000028)	ENSSMRG00000017150 #22	PTPRM (ENSSMRG00000017110)	ENSSMRG00000017057	LAMA1 (ENSSMRG00000016637)	ARHGAP28 (ENSSMRG00000016636)	TMEM200C (ENSSMRG00000016635)	EPB41L3 (ENSSMRG00000016633)	ZBTB14 (ENSSMRG00000016632)	ENSSMRG00000016631	DLGAP1 (ENSSMRG00000016629)	ENSSMRG00000016628	TGIF1 (ENSSMRG00000016627)	ENSSMRG00000016626	MYOM1 (ENSSMRG00000016623)	LPIN2 (ENSSMRG00000016622)	EMILIN2 (ENSSMRG00000016621)
Anura	ANCESTRAL SPECIES	4	ENSGT00940000159022	ENSGT00390000016836.a #7	ENSGT00430000031027.a #9	ENSGT00940000154642 #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013143 #13	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.a #33	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00390000011475 #37
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000003653	GTF2H3 (ENSLLEG00000003621) #13	EIF2B1 (ENSLLEG00000003591) #14	ENSLLEG00000003576	ENSLLEG00000003569	DDX55 (ENSLLEG00000003520) #15	ENSLLEG00000003493	TMED2 (ENSLLEG00000003478) #16	ENSLLEG00000003459	RILPL1 (ENSLLEG00000003430) #17	SNRNP35 (ENSLLEG00000003420) #18	RILPL2 (ENSLLEG00000003409) #19	ENSLLEG00000003399	ENSLLEG00000003390	SBNO1 (ENSLLEG00000002951) #21	ENSLLEG00000002828 #22	ENSLLEG00000002821	ENSLLEG00000002809	MTRFR (ENSLLEG00000002799) #23	MPHOSPH9 (ENSLLEG00000002767) #24	PITPNM2 (ENSLLEG00000002677) #25	ARL6IP4 (ENSLLEG00000002628) #26	OGFOD2 (ENSLLEG00000002591) #27	ENSLLEG00000002551	ABCB9 (ENSLLEG00000002516) #28	ENSLLEG00000002498	VPS37B (ENSLLEG00000002487) #29	ENSLLEG00000002475	HIP1R (ENSLLEG00000002280) #30	ENSLLEG00000002226	ENSLLEG00000002217
Leishan spiny toad	MODERN SPECIES		PTBP1 (ENSLLEG00000025108)	PLPPR3 (ENSLLEG00000026979)	ENSLLEG00000027035	ENSLLEG00000027074	R3HDM4 (ENSLLEG00000027114)	MED16 (ENSLLEG00000027294)	ENSLLEG00000027599	ENSLLEG00000027606	ENSLLEG00000027619	ENSLLEG00000027678	ENSLLEG00000027703	ENSLLEG00000027769	ENSLLEG00000027782	ENSLLEG00000027799	WDR18 (ENSLLEG00000027810)	ENSLLEG00000027842 #22	GRIN3B (ENSLLEG00000027861)	TMEM259 (ENSLLEG00000027920)	CNN2 (ENSLLEG00000000103)	ENSLLEG00000000119	ENSLLEG00000000198	FSTL3 (ENSLLEG00000000367)	RNF126 (ENSLLEG00000000397)	POLRMT (ENSLLEG00000000468)	HCN2 (ENSLLEG00000000571)	ENSLLEG00000000601	BSG (ENSLLEG00000000622)	CDC34 (ENSLLEG00000000676)	ENSLLEG00000000693	TPGS1 (ENSLLEG00000000708)	ENSLLEG00000000735
Leishan spiny toad	MODERN SPECIES	745																ENSLLEG00000023391 #22
Leishan spiny toad	MODERN SPECIES	1462																ENSLLEG00000025799 #22
Frog	MODERN SPECIES		ccdc92 (ENSXETG00000032327) #9	dnah10 (ENSXETG00000030188) #10	atp6v0a2 (ENSXETG00000005832) #11	tctn2 (ENSXETG00000005831) #12	gtf2h3 (ENSXETG00000039489) #13	eif2b1 (ENSXETG00000005830) #14	ddx55 (ENSXETG00000005825) #15	tmed2 (ENSXETG00000005824) #16	rilpl1 (ENSXETG00000032256) #17	ENSXETG00000042328	snrnp35 (ENSXETG00000034327) #18	rilpl2 (ENSXETG00000005821) #19	ENSXETG00000043812	kmt5a (ENSXETG00000005820)	sbno1 (ENSXETG00000031930) #21	cdk2ap1 (ENSXETG00000005817) #22	MTRFR (ENSXETG00000038107) #23	mphosph9 (ENSXETG00000030657) #24	pitpnm2 (ENSXETG00000032678) #25	arl6ip4 (ENSXETG00000032991) #26	ogfod2 (ENSXETG00000044156) #27	gin1 (ENSXETG00000000145)	abcb9 (ENSXETG00000030035) #28	vps37b (ENSXETG00000005797) #29	ENSXETG00000043791	hip1r (ENSXETG00000005793) #30	ccdc62 (ENSXETG00000033620) #31	denr (ENSXETG00000005791) #32	ENSXETG00000033184 #33	kntc1 (ENSXETG00000007799) #35	rsrc2 (ENSXETG00000007798) #36
Actinopterygii	ANCESTRAL SPECIES	16	ENSGT00430000031027.a #9	ENSGT00940000154642.d #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013929	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00940000173464	ENSGT00390000011475 #37
Neopterygii	ANCESTRAL SPECIES	39	ENSGT00430000031027.a #9	ENSGT00940000154642.d #10	ENSGT00950000182881.a.b.a.a #11	ENSGT00570000079101.b #12	ENSGT00390000013929	ENSGT00390000013143 #13	ENSGT00960000189785	ENSGT00550000074853 #14	ENSGT00550000074969 #15	ENSGT00940000155143 #16	ENSGT00940000157897 #17	ENSGT00940000157648 #18	ENSGT00940000160182 #19	ENSGT00940000163293	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000164860	ENSGT00940000153849.a #25	ENSGT00390000009670 #26	ENSGT00940000153974.B #27	ENSGT00940000164419	ENSGT00940000155431.a #28	ENSGT00950000183012.A.a #29	ENSGT00940000153594.c #30	ENSGT00400000022269 #31	ENSGT00390000007883 #35	ENSGT00730000111142 #36	ENSGT00940000173464	ENSGT00390000011475 #37
Osteoglossocephalai	ANCESTRAL SPECIES	5	ENSGT00390000008994	ENSGT00940000162236	ENSGT00940000155122.a	ENSGT00390000011475 #37	ENSGT00940000173464	ENSGT00730000111142 #36	ENSGT00390000007883 #35	ENSGT00990000203619.A.b.b.b.b.a.a #33	ENSGT00940000153594.c.e.a #30	ENSGT00940000157897 #17	ENSGT00940000160182 #19	ENSGT00940000163293.c.a	ENSGT00940000157648 #18	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a.b #25	ENSGT00940000153849.a.a.a #25	ENSGT00390000009670 #26	ENSGT00940000164825	ENSGT01050000244898.b.a	ENSGT00940000159627	ENSGT00940000163919.a	ENSGT00940000159932.a	ENSGT00940000168975	ENSGT00940000155760.t.a	ENSGT00950000182859.A.a.a.b	ENSGT00940000156009.A.c	ENSGT00940000164890.b
Clupeocephala	ANCESTRAL SPECIES	310						ENSGT00940000178249	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.b #25	ENSGT00940000164860.c	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.b
Euteleosteomorpha	ANCESTRAL SPECIES	53	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000178249	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000157897.a #17	ENSGT00940000157648 #18	ENSGT00940000153594.c.e.b #30	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.b #25	ENSGT00940000164860.c	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00940000154426	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00940000162090
Acanthomorphata	ANCESTRAL SPECIES	15	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000178249	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00940000162090	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b
Euacanthomorphacea	ANCESTRAL SPECIES	12	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000178249	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00940000162090	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b
Percomorphaceae	ANCESTRAL SPECIES	16	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000178249	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329
Percomorphaceae_B	ANCESTRAL SPECIES	16	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329
Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329
Carangaria	ANCESTRAL SPECIES	17	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Pleuronectoidei	ANCESTRAL SPECIES	7	ENSGT00940000156428.m.b	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967	ENSGT00940000158733
Turbot	MODERN SPECIES		pla2g3 (ENSSMAG00000010333)	ENSSMAG00000010362	ptpn11a (ENSSMAG00000010396)	tmed2 (ENSSMAG00000010428) #16	ddx55 (ENSSMAG00000010441) #15	EIF2B1 (ENSSMAG00000010476) #14	ENSSMAG00000010511	ENSSMAG00000010534	ENSSMAG00000010551 ##33	ENSSMAG00000010563 #32	ENSSMAG00000010587	ENSSMAG00000010609 #30	ENSSMAG00000013756 #17	kmt5aa (ENSSMAG00000013718)	SBNO1 (ENSSMAG00000013640) #21	CDK2AP1 (ENSSMAG00000013617) #22	MPHOSPH9 (ENSSMAG00000013556) #24	PITPNM2 (ENSSMAG00000013381) #25	ENSSMAG00000035210	ENSSMAG00000003866	ENSSMAG00000015073	ENSSMAG00000035458	ENSSMAG00000032159	ENSSMAG00000032361	ENSSMAG00000034040	ENSSMAG00000037658	ENSSMAG00000024478	ENSSMAG00000032458	ENSSMAG00000014668	ENSSMAG00000014643	ENSSMAG00000014540
Tongue sole	MODERN SPECIES	5	pla2g3 (ENSCSEG00000012236)	ENSCSEG00000012216	ptpn11a (ENSCSEG00000012197)	tmed2 (ENSCSEG00000012180) #16	ddx55 (ENSCSEG00000012161) #15	eif2b1 (ENSCSEG00000012141) #14	bcl7a (ENSCSEG00000012135)	ENSCSEG00000012128	ENSCSEG00000012119	ENSCSEG00000012113 ##33	denr (ENSCSEG00000012090) #32	HIP1R (ENSCSEG00000012059) #30	RILPL1 (ENSCSEG00000012038) #17	kmt5aa (ENSCSEG00000012018)	sbno1 (ENSCSEG00000011919) #21	CDK2AP1 (ENSCSEG00000011903) #22	MPHOSPH9 (ENSCSEG00000011886) #24	ENSCSEG00000011879	ENSCSEG00000011807 #25	KIF2A (ENSCSEG00000011790)	ENSCSEG00000011784	ENSCSEG00000011775	oclna (ENSCSEG00000011772)	RASGRF2 (ENSCSEG00000011747)	CKMT1A (ENSCSEG00000011736)	ckmt2a (ENSCSEG00000011734)	ENSCSEG00000011731	ENSCSEG00000011721	ENSCSEG00000011700	CNNM4 (ENSCSEG00000011693)	ENSCSEG00000011684
Carangaria_A	ANCESTRAL SPECIES	18	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Barramundi perch	MODERN SPECIES	23	ENSLCAG00010011160	ENSLCAG00010011065	ptpn11a (ENSLCAG00010010974)	tmed2 (ENSLCAG00010010947) #16	ddx55 (ENSLCAG00010010778) #15	ENSLCAG00010010735	eif2b1 (ENSLCAG00010010681) #14	ENSLCAG00010010651	ENSLCAG00010010635 ##33	denr (ENSLCAG00010010626) #32	ccdc62 (ENSLCAG00010010621)	HIP1R (ENSLCAG00010010266) #30	RILPL1 (ENSLCAG00010010201) #17	kmt5aa (ENSLCAG00010010197)	sbno1 (ENSLCAG00010009868) #21	CDK2AP1 (ENSLCAG00010009794) #22	ENSLCAG00010009791	ENSLCAG00010009683	ENSLCAG00010009637	ENSLCAG00010009626	ENSLCAG00010009620	ENSLCAG00010009611	ccng2 (ENSLCAG00010009605)	ENSLCAG00010009602	ccni (ENSLCAG00010009595)	WDR7 (ENSLCAG00010009563)
Seriola	ANCESTRAL SPECIES	53	ENSGT00940000158562	ENSGT00940000158733	ENSGT00940000155967	ENSGT00940000156571	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT01030000235246	ENSGT00940000155188.B.a	ENSGT00940000156621.e.b	ENSGT00940000156980.a	ENSGT00390000014618.b.c	ENSGT00390000011031	ENSGT00940000154962.A.a.b	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00940000155122.b	ENSGT00390000002172.B	ENSGT00550000074853 #14
Yellowtail amberjack	MODERN SPECIES	2235							ENSSLDG00000007636	sec31a (ENSSLDG00000007659)	TMEM150C (ENSSLDG00000007720)	enoph1 (ENSSLDG00000007741)	ccdc62 (ENSSLDG00000007767)	HIP1R (ENSSLDG00000007789) #30	RILPL1 (ENSSLDG00000007872) #17	kmt5aa (ENSSLDG00000007888)	sbno1 (ENSSLDG00000007928) #21	CDK2AP1 (ENSSLDG00000008119) #22	MPHOSPH9 (ENSSLDG00000008150) #24	PITPNM2 (ENSSLDG00000008210) #25
Greater amberjack	MODERN SPECIES	19	ppwd1 (ENSSDUG00000023421)	cwc27 (ENSSDUG00000023425)	ADAMTS6 (ENSSDUG00000023427)	plac8.1 (ENSSDUG00000023434)	cops4 (ENSSDUG00000023438)	lin54 (ENSSDUG00000023444)	sec31a (ENSSDUG00000023451)	TMEM150C (ENSSDUG00000023464)	enoph1 (ENSSDUG00000023468)	ccdc62 (ENSSDUG00000023469)	ENSSDUG00000023471 #30	ENSSDUG00000023474 #30	RILPL1 (ENSSDUG00000023476) #17	kmt5aa (ENSSDUG00000023477)	sbno1 (ENSSDUG00000023480) #21	CDK2AP1 (ENSSDUG00000023492) #22	MPHOSPH9 (ENSSDUG00000023494) #24	PITPNM2 (ENSSDUG00000023497) #25	KIF2A (ENSSDUG00000023499)	ENSSDUG00000023516	TRAF2 (ENSSDUG00000023529)	ENSSDUG00000023532	ZNF703 (ENSSDUG00000023538)	C2orf42 (ENSSDUG00000023541)	tia1 (ENSSDUG00000023544)	denr (ENSSDUG00000023551) #32	ENSSDUG00000023555 ##33	ENSSDUG00000023556	ENSSDUG00000023557	bcl7a (ENSSDUG00000023559)	eif2b1 (ENSSDUG00000023561) #14
Anabantaria	ANCESTRAL SPECIES	12	ENSGT00940000158067.b	ENSGT00940000157699	ENSGT00940000160372	ENSGT00940000160516	ENSGT00940000158866	ENSGT00940000161769.b.b	ENSGT00940000159913.a.b	ENSGT00940000156031.f	ENSGT00940000155411.d	ENSGT00940000157492.a	ENSGT00940000157995	ENSGT00940000159267	ENSGT00940000156102.r	ENSGT00940000166544.a	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329
Zig-zag eel	MODERN SPECIES	3	ENSMAMG00000006193	ENSMAMG00000006072	ENSMAMG00000006005	ENSMAMG00000025402	ENSMAMG00000027710	ENSMAMG00000006145	ENSMAMG00000027148	ENSMAMG00000005950	vcanb (ENSMAMG00000005922)	xrcc4 (ENSMAMG00000024660)	ENSMAMG00000025349	ENSMAMG00000028067	ENSMAMG00000024362	ENSMAMG00000027057	SBNO1 (ENSMAMG00000005473) #21	CDK2AP1 (ENSMAMG00000005443) #22	MPHOSPH9 (ENSMAMG00000005376) #24	PITPNM2 (ENSMAMG00000005324) #25	ENSMAMG00000005289	ENSMAMG00000005237	ENSMAMG00000005201	mat2al (ENSMAMG00000005162)	si:ch73-234b20.5 (ENSMAMG00000005144)	hnrnpd (ENSMAMG00000004971)	ENOPH1 (ENSMAMG00000027525)	TMEM150C (ENSMAMG00000004946)	sec31a (ENSMAMG00000004874)	lin54 (ENSMAMG00000004854)	COPS4 (ENSMAMG00000004815)	plac8.1 (ENSMAMG00000004799)	ENSMAMG00000004760
Anabantoidei	ANCESTRAL SPECIES	16	ENSGT00940000158873	ENSGT00940000157699	ENSGT00940000160372	ENSGT00940000160516	ENSGT00940000158866	ENSGT00940000161769.b.b	ENSGT00940000159913.a.b	ENSGT00940000156031.f	ENSGT00940000155411.d	ENSGT00940000157492.a	ENSGT00940000157995	ENSGT00940000159267	ENSGT00940000156102.r	ENSGT00940000166544.a	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT01030000234578.A.a.e.a.a	ENSGT00440000039914	ENSGT01030000234578.A.a.e.b	ENSGT01030000234578.A.a.f	ENSGT00390000003175.a.b	ENSGT00940000155881
Siamese fighting fish	MODERN SPECIES	3	SEZ6L (ENSBSLG00000016929)	grk3 (ENSBSLG00000016276)	cryba4 (ENSBSLG00000016252)	crybb1 (ENSBSLG00000016246)	acads (ENSBSLG00000015974)	cldn5b (ENSBSLG00000015959)	SEPTIN5 (ENSBSLG00000015436)	ENSBSLG00000015078	ENSBSLG00000015057	cetn3 (ENSBSLG00000015046)	HAPLN1 (ENSBSLG00000015041)	ENSBSLG00000015039	ENSBSLG00000015025	xrcc4 (ENSBSLG00000015016)	sbno1 (ENSBSLG00000012775) #21	CDK2AP1 (ENSBSLG00000012732) #22	ENSBSLG00000012729	ENSBSLG00000012721 #24	PITPNM2 (ENSBSLG00000012629) #25	KIF2A (ENSBSLG00000012547)	ZSWIM6 (ENSBSLG00000011542)	si:ch73-234b20.5 (ENSBSLG00000011518)	hnrnpd (ENSBSLG00000011494)	ENSBSLG00000011486	ENSBSLG00000011481	enoph1 (ENSBSLG00000011476)	TMEM150C (ENSBSLG00000011471)	TMEM150C (ENSBSLG00000011466)	TMEM150C (ENSBSLG00000011460)	ENSBSLG00000011448	sec31a (ENSBSLG00000011084)
Climbing perch	MODERN SPECIES	3	ENSATEG00000005483	grk3 (ENSATEG00000005908)	cryba4 (ENSATEG00000006007)	crybb1 (ENSATEG00000006033)	acads (ENSATEG00000006326)	ENSATEG00000006338	ENSATEG00000006356	ENSATEG00000006369	ENSATEG00000006498	ENSATEG00000006512	ENSATEG00000006557	ENSATEG00000006578	vcanb (ENSATEG00000006644)	xrcc4 (ENSATEG00000026220)	SBNO1 (ENSATEG00000006667) #21	CDK2AP1 (ENSATEG00000006721) #22	MPHOSPH9 (ENSATEG00000006746) #24	PITPNM2 (ENSATEG00000006764) #25	ENSATEG00000006887	ENSATEG00000006972	ENSATEG00000007036	mat2al (ENSATEG00000007046)	ENSATEG00000027999	hnrnpd (ENSATEG00000007097)	ENSATEG00000007235	ENSATEG00000007131	TMEM150C (ENSATEG00000007228)	TMEM150C (ENSATEG00000026913)	TMEM150C (ENSATEG00000007266)	SEC31A (ENSATEG00000007271)	TMEM150C (ENSATEG00000026625)
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Tetraodontidae	ANCESTRAL SPECIES	19	ENSGT00940000155101.e	ENSGT00940000156428	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
Fugu	MODERN SPECIES	18	brap (ENSTRUG00000018551)	ENSTRUG00000030820	pitpnb (ENSTRUG00000018546)	ENSTRUG00000026481	pla2g3 (ENSTRUG00000018542)	ENSTRUG00000018535	ddx55 (ENSTRUG00000018525) #15	eif2b1 (ENSTRUG00000018520) #14	ENSTRUG00000024096	ENSTRUG00000018511 ##33	denr (ENSTRUG00000020621) #32	ccdc62 (ENSTRUG00000022161)	RILPL1 (ENSTRUG00000018499) #17	kmt5aa (ENSTRUG00000018497)	sbno1 (ENSTRUG00000018490) #21	CDK2AP1 (ENSTRUG00000025872) #22	MPHOSPH9 (ENSTRUG00000018487) #24	ENSTRUG00000018472	ZSWIM6 (ENSTRUG00000018464)	ENSTRUG00000018462	mat2al (ENSTRUG00000018457)	si:ch73-234b20.5 (ENSTRUG00000023648)	hnrnpd (ENSTRUG00000018450)	enoph1 (ENSTRUG00000018448)	sec31a (ENSTRUG00000018434)	lin54 (ENSTRUG00000018428)	cops4 (ENSTRUG00000018422)	plac8 (ENSTRUG00000027976)	ADAMTS6 (ENSTRUG00000018410)	cwc27 (ENSTRUG00000018406)	ppwd1 (ENSTRUG00000018397)
Tetraodon	MODERN SPECIES	19	tmed2 (ENSTNIG00000013520) #16	zgc:162895 (ENSTNIG00000013518)	tubb6 (ENSTNIG00000013517)	dipk1c (ENSTNIG00000005803)	ddx55 (ENSTNIG00000013515) #15	eif2b1 (ENSTNIG00000013514) #14	bcl7a (ENSTNIG00000013513)	ENSTNIG00000013512	ENSTNIG00000013511 ##33	denr (ENSTNIG00000013510) #32	HIP1R (ENSTNIG00000013509) #30	RILPL1 (ENSTNIG00000013508) #17	kmt5aa (ENSTNIG00000013507)	sbno1 (ENSTNIG00000013506) #21	ENSTNIG00000001702 #21	CDK2AP1 (ENSTNIG00000000325) #22	MPHOSPH9 (ENSTNIG00000013505) #24	PITPNM2 (ENSTNIG00000013504) #25	ENSTNIG00000013503	ZSWIM6 (ENSTNIG00000013502)	mat2al (ENSTNIG00000013501)	si:ch73-234b20.5 (ENSTNIG00000013500)	hnrnpd (ENSTNIG00000013499)	enoph1 (ENSTNIG00000013498)	sec31a (ENSTNIG00000013497)	lin54 (ENSTNIG00000013496)	cops4 (ENSTNIG00000013495)	plac8.1 (ENSTNIG00000013494)	ADAMTS6 (ENSTNIG00000013493)	cwc27 (ENSTNIG00000013492)	ppwd1 (ENSTNIG00000013491)
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Ballan wrasse	MODERN SPECIES	665													RILPL1 (ENSLBEG00000007515) #17	kmt5aa (ENSLBEG00000007562)	sbno1 (ENSLBEG00000007623) #21	CDK2AP1 (ENSLBEG00000007808) #22	MPHOSPH9 (ENSLBEG00000007835) #24	PITPNM2 (ENSLBEG00000007881) #25	KIF2A (ENSLBEG00000007973)	ZSWIM6 (ENSLBEG00000008036)
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Gilthead seabream	MODERN SPECIES	3	ENSSAUG00010007175	ENSSAUG00010007176	ENSSAUG00010007178	ENSSAUG00010007179	ENSSAUG00010007180	ENSSAUG00010007181	bcl7a (ENSSAUG00010007182)	ENSSAUG00010007185	ENSSAUG00010007188 ##33	denr (ENSSAUG00010007189) #32	ENSSAUG00010007191	HIP1R (ENSSAUG00010007193) #30	RILPL1 (ENSSAUG00010007209) #17	kmt5aa (ENSSAUG00010007210)	sbno1 (ENSSAUG00010007223) #21	CDK2AP1 (ENSSAUG00010010889) #22	ENSSAUG00010010891 #24	ENSSAUG00010010893	ENSSAUG00010010895	PITPNM2 (ENSSAUG00010010907) #25	ENSSAUG00010011806	ENSSAUG00010011809	ENSSAUG00010011810	ENSSAUG00010011811	ENSSAUG00010011813	ENSSAUG00010011814	KIF2A (ENSSAUG00010011847)	ENSSAUG00010014871	ENSSAUG00010014873	ZSWIM6 (ENSSAUG00010014895)	ENSSAUG00010016234
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	6	ENSGT00940000155101.e	ENSGT00940000156428	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Large yellow croaker	MODERN SPECIES	4	ENSLCRG00005008600	crkl (ENSLCRG00005008601)	si:ch211-222n4.2 (ENSLCRG00005008605)	ULK1 (ENSLCRG00005008607)	ENSLCRG00005008617	MMP17 (ENSLCRG00005008618)	ENSLCRG00005008620	nup35 (ENSLCRG00005008622)	ENSLCRG00005008623	ddx3xa (ENSLCRG00005008630)	nyx (ENSLCRG00005010277)	CASK (ENSLCRG00005010297)	ENSLCRG00005012002	gpr34b (ENSLCRG00005012003)	sbno1 (ENSLCRG00005012010) #21	CDK2AP1 (ENSLCRG00005012228) #22	MPHOSPH9 (ENSLCRG00005012234) #24	kmt5aa (ENSLCRG00005002364)	PITPNM2 (ENSLCRG00005002426) #25	KIF2A (ENSLCRG00005002762)	ZSWIM6 (ENSLCRG00005002956)	ahr2 (ENSLCRG00005004525)	mat2al (ENSLCRG00005004527)	si:ch73-234b20.5 (ENSLCRG00005004543)	hnrnpd (ENSLCRG00005004544)	ENOPH1 (ENSLCRG00005004552)	TMEM150C (ENSLCRG00005004553)	sec31a (ENSLCRG00005004561)	lin54 (ENSLCRG00005004573)	cops4 (ENSLCRG00005004664)	plac8.1 (ENSLCRG00005004703)
European seabass	MODERN SPECIES	9	ENSDLAG00005010117	pitpnb (ENSDLAG00005026952)	ENSDLAG00005010195	pla2g3 (ENSDLAG00005010347)	ENSDLAG00005010369	ptpn11a (ENSDLAG00005010624)	tmed2 (ENSDLAG00005026328) #16	ddx55 (ENSDLAG00005011433) #15	EIF2B1 (ENSDLAG00005011652) #14	ENSDLAG00005012192 ##33	ENSDLAG00005012197 #32	ENSDLAG00005012230 #30	ENSDLAG00005030358 #17	kmt5aa (ENSDLAG00005032838)	SBNO1 (ENSDLAG00005012458) #21	CDK2AP1 (ENSDLAG00005031361) #22	MPHOSPH9 (ENSDLAG00005015522) #24	PITPNM2 (ENSDLAG00005015579) #25	ENSDLAG00005018427	ENSDLAG00005019991	ENSDLAG00005020362	TMEM150C (ENSDLAG00005020425)	enoph1 (ENSDLAG00005020433)	hnrnpd (ENSDLAG00005020442)	si:ch73-234b20.5 (ENSDLAG00005034912)	mat2al (ENSDLAG00005020467)	SEC31A (ENSDLAG00005020508)	lin54 (ENSDLAG00005020845)	COPS4 (ENSDLAG00005020910)	plac8.1 (ENSDLAG00005020949)	ENSDLAG00005020960
Perciformes	ANCESTRAL SPECIES	16	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Perciformes_a	ANCESTRAL SPECIES	12	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Pike perch	MODERN SPECIES	165	ENSSLUG00000016905	ptpn11a (ENSSLUG00000016964)	tmed2 (ENSSLUG00000018019) #16	ddx55 (ENSSLUG00000018047) #15	eif2b1 (ENSSLUG00000018094) #14	bcl7a (ENSSLUG00000018262)	ENSSLUG00000018266	ENSSLUG00000018270 ##33	denr (ENSSLUG00000018274) #32	ENSSLUG00000018282 ##33	ENSSLUG00000018287	HIP1R (ENSSLUG00000018303) #30	RILPL1 (ENSSLUG00000018336) #17	kmt5aa (ENSSLUG00000018350)	sbno1 (ENSSLUG00000018463) #21	CDK2AP1 (ENSSLUG00000022395) #22	MPHOSPH9 (ENSSLUG00000022407) #24	ENSSLUG00000022413	PITPNM2 (ENSSLUG00000022540) #25	KIF2A (ENSSLUG00000023853)	ZSWIM6 (ENSSLUG00000024177)	ENSSLUG00000024223	ahr2 (ENSSLUG00000002968)	mat2al (ENSSLUG00000003453)	si:ch73-234b20.5 (ENSSLUG00000003528)	hnrnpd (ENSSLUG00000003534)	enoph1 (ENSSLUG00000003542)	TMEM150C (ENSSLUG00000003552)	sec31a (ENSSLUG00000003678)	lin54 (ENSSLUG00000004104)	cops4 (ENSSLUG00000004332)
Channel bull blenny	MODERN SPECIES	3	pla2g3 (ENSCGOG00000024208)	ENSCGOG00000024217	ptpn11a (ENSCGOG00000024247)	tmed2 (ENSCGOG00000024293) #16	ddx55 (ENSCGOG00000024302) #15	eif2b1 (ENSCGOG00000024319) #14	bcl7a (ENSCGOG00000004076)	ENSCGOG00000004094	ENSCGOG00000004105 ##33	denr (ENSCGOG00000004119) #32	ccdc62 (ENSCGOG00000004191)	HIP1R (ENSCGOG00000004261) #30	RILPL1 (ENSCGOG00000005624) #17	kmt5aa (ENSCGOG00000005633)	sbno1 (ENSCGOG00000005666) #21	CDK2AP1 (ENSCGOG00000007500) #22	MPHOSPH9 (ENSCGOG00000007509) #24	PITPNM2 (ENSCGOG00000007514) #25	KIF2A (ENSCGOG00000007698)	ZSWIM6 (ENSCGOG00000010592)	ahr2 (ENSCGOG00000010813)	mat2al (ENSCGOG00000010821)	hnrnpd (ENSCGOG00000011480)	si:ch73-234b20.5 (ENSCGOG00000011539)	enoph1 (ENSCGOG00000011542)	TMEM150C (ENSCGOG00000011547)	sec31a (ENSCGOG00000011628)	lin54 (ENSCGOG00000015485)	cops4 (ENSCGOG00000015563)	plac8.1 (ENSCGOG00000015587)	ADAMTS6 (ENSCGOG00000015595)
Cottioidei	ANCESTRAL SPECIES	33	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
Lumpfish	MODERN SPECIES	3	ptger4b (ENSCLMG00005013917)	MAP1B (ENSCLMG00005013918)	ptcd2 (ENSCLMG00005013920)	CACFD1 (ENSCLMG00005013921)	ENSCLMG00005013922	garnl3 (ENSCLMG00005013925)	ptges (ENSCLMG00005014209)	usp20 (ENSCLMG00005014215)	RPL7A (ENSCLMG00005014319)	ENSCLMG00005014326	surf1 (ENSCLMG00005014335)	surf6 (ENSCLMG00005014336)	kyat1 (ENSCLMG00005014337)	kmt5aa (ENSCLMG00005014338)	sbno1 (ENSCLMG00005014368) #21	CDK2AP1 (ENSCLMG00005017595) #22	ENSCLMG00005017596	PITPNM2 (ENSCLMG00005017599) #25	ENSCLMG00005017602	ZSWIM6 (ENSCLMG00005017606)	ENSCLMG00005018124	mat2al (ENSCLMG00005018126)	si:ch73-234b20.5 (ENSCLMG00005018135)	hnrnpd (ENSCLMG00005018137)	enoph1 (ENSCLMG00005018139)	sec31a (ENSCLMG00005018147)	lin54 (ENSCLMG00005018332)	cops4 (ENSCLMG00005018470)	plac8.1 (ENSCLMG00005018495)	ADAMTS6 (ENSCLMG00005018496)	cwc27 (ENSCLMG00005018500)
Stickleback	MODERN SPECIES	13	ENSGACG00000015564	ENSGACG00000015567	ptpn11a (ENSGACG00000015575)	tmed2 (ENSGACG00000015584) #16	ddx55 (ENSGACG00000015591) #15	eif2b1 (ENSGACG00000015598) #14	bcl7a (ENSGACG00000015604)	ENSGACG00000015608	ENSGACG00000015612 ##33	denr (ENSGACG00000015614) #32	ccdc62 (ENSGACG00000015623)	ENSGACG00000015624	RILPL1 (ENSGACG00000015627) #17	kmt5aa (ENSGACG00000015630)	sbno1 (ENSGACG00000015633) #21	CDK2AP1 (ENSGACG00000015636) #22	ENSGACG00000015639 #24	PITPNM2 (ENSGACG00000015641) #25	ENSGACG00000015644	ZSWIM6 (ENSGACG00000015647)	ENSGACG00000015649	ENSGACG00000015650	mat2al (ENSGACG00000015651)	hnrnpd (ENSGACG00000015669)	enoph1 (ENSGACG00000015673)	sec31a (ENSGACG00000015685)	lin54 (ENSGACG00000015693)	cops4 (ENSGACG00000015697)	plac8.1 (ENSGACG00000015705)	ADAMTS6 (ENSGACG00000015707)	cwc27 (ENSGACG00000015712)
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Atherinomorphae	ANCESTRAL SPECIES	17	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
Oryzias	ANCESTRAL SPECIES	9	ENSGT00390000010474	ENSGT00940000166967	ENSGT00940000158323.g	ENSGT00550000074946	ENSGT00940000158107.a.a	ENSGT00940000165717	ENSGT01030000234539.b.b.a.i	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000180550	ENSGT00940000156571
Oryzias_a	ANCESTRAL SPECIES	12	ENSGT00390000010474	ENSGT00940000166967	ENSGT00940000158323.g	ENSGT00550000074946	ENSGT00940000158107.a.a	ENSGT00940000165717	ENSGT01030000234539.b.b.a.i	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b.a	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000180550	ENSGT00940000156571
Japanese Medaka HdrR	MODERN SPECIES	3	ddx56 (ENSORLG00000001434)	DUSP26 (ENSORLG00000029504)	ENSORLG00000001446	ENSORLG00000001464	ENSORLG00000026483	ENSORLG00000028535	ENSORLG00000001483	ENSORLG00000024996 ##33	denr (ENSORLG00000001495) #32	ENSORLG00000029471	ENSORLG00000001544 #30	ENSORLG00000021982 #30	RILPL1 (ENSORLG00000001553) #17	kmt5aa (ENSORLG00000001558)	sbno1 (ENSORLG00000001593) #21	CDK2AP1 (ENSORLG00000029235) #22	MPHOSPH9 (ENSORLG00000029246) #24	PITPNM2 (ENSORLG00000001638) #25	ENSORLG00000001697	ENSORLG00000001735	mat2al (ENSORLG00000001777)	si:ch73-234b20.5 (ENSORLG00000029060)	hnrnpd (ENSORLG00000001833)	ENOPH1 (ENSORLG00000001846)	TMEM150C (ENSORLG00000030448)	sec31a (ENSORLG00000001874)	lin54 (ENSORLG00000001906)	cops4 (ENSORLG00000001924)	plac8.1 (ENSORLG00000024268)	ENSORLG00000025212	ADAMTS6 (ENSORLG00000001971)
Chinese medaka	MODERN SPECIES	215	crybb1 (ENSOSIG00000019154)	cryba4 (ENSOSIG00000019153)	SEZ6L (ENSOSIG00000019102)	ENSOSIG00000019078	grk5 (ENSOSIG00000018977)	ash2l (ENSOSIG00000018958)	pnx (ENSOSIG00000018951)	ENSOSIG00000018940	DUSP26 (ENSOSIG00000018938)	ddx56 (ENSOSIG00000018903)	ENSOSIG00000018897	ENSOSIG00000018889 ##33	denr (ENSOSIG00000018888) #32	RILPL1 (ENSOSIG00000018879) #17	kmt5aa (ENSOSIG00000018871)	CDK2AP1 (ENSOSIG00000018622) #22	MPHOSPH9 (ENSOSIG00000018618) #24	PITPNM2 (ENSOSIG00000017036) #25
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00390000010474	ENSGT00940000166967	ENSGT00940000158323.g	ENSGT00550000074946	ENSGT00940000158107.a.a	ENSGT01100000266316	ENSGT01030000234539.b.b.a.i	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
Indian medaka	MODERN SPECIES	30	pnx (ENSOMEG00000022281)	aebp1a (ENSOMEG00000022232)	ddx56 (ENSOMEG00000022072)	DUSP26 (ENSOMEG00000022024)	ENSOMEG00000000858	ZMIZ2 (ENSOMEG00000021971)	ENSOMEG00000021883	ENSOMEG00000021873	ENSOMEG00000021864 ##33	denr (ENSOMEG00000021836) #32	ccdc62 (ENSOMEG00000021753)	HIP1R (ENSOMEG00000021109) #30	RILPL1 (ENSOMEG00000019394) #17	kmt5aa (ENSOMEG00000019347)	sbno1 (ENSOMEG00000019313) #21	CDK2AP1 (ENSOMEG00000019254) #22	MPHOSPH9 (ENSOMEG00000019226) #24	PITPNM2 (ENSOMEG00000019058) #25	ENSOMEG00000018764	ZSWIM6 (ENSOMEG00000018660)	mat2al (ENSOMEG00000018599)	si:ch73-234b20.5 (ENSOMEG00000018572)	hnrnpd (ENSOMEG00000018558)	enoph1 (ENSOMEG00000018534)	TMEM150C (ENSOMEG00000018506)	sec31a (ENSOMEG00000018435)	lin54 (ENSOMEG00000018289)	cops4 (ENSOMEG00000000468)	ENSOMEG00000018208	ADAMTS6 (ENSOMEG00000018187)	cwc27 (ENSOMEG00000018078)
Javanese ricefish	MODERN SPECIES	3	tacr1b (ENSOJAG00000013289)	scarb1 (ENSOJAG00000013210)	ENSOJAG00000013098	ddx56 (ENSOJAG00000012963)	DUSP26 (ENSOJAG00000012931)	ENSOJAG00000012915	ENSOJAG00000012799	ZMIZ2 (ENSOJAG00000012581)	ENSOJAG00000012547	ENSOJAG00000012527 ##33	denr (ENSOJAG00000012408) #32	ccdc62 (ENSOJAG00000012384)	ccdc62 (ENSOJAG00000012362)	RILPL1 (ENSOJAG00000012157) #17	kmt5aa (ENSOJAG00000012131)	ENSOJAG00000010455 #22	ENSOJAG00000010435	ENSOJAG00000010311	ZSWIM6 (ENSOJAG00000009483)	mat2al (ENSOJAG00000009024)	si:ch73-234b20.5 (ENSOJAG00000008982)	hnrnpd (ENSOJAG00000008964)	ENOPH1 (ENSOJAG00000008954)	TMEM150C (ENSOJAG00000008930)	sec31a (ENSOJAG00000008250)	lin54 (ENSOJAG00000008114)	cops4 (ENSOJAG00000008081)	plac8.1 (ENSOJAG00000008053)	ADAMTS6 (ENSOJAG00000007539)	cwc27 (ENSOJAG00000007407)	ppwd1 (ENSOJAG00000007397)
Cyprinodontiformes	ANCESTRAL SPECIES	16	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
Cyprinodontoidei	ANCESTRAL SPECIES	16	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00390000011669	ENSGT00970000193629.b	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00940000155122.b	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00390000011669	ENSGT00970000193629.b	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
Poecilia	ANCESTRAL SPECIES	12	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00940000155122.b	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00390000011669	ENSGT00970000193629.b	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
NAME_6	ANCESTRAL SPECIES	172		ENSGT00940000154848.a.j.d.a	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00390000014349 #32	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00940000155122.b	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00390000011669	ENSGT00970000193629.b	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
Sailfin molly	MODERN SPECIES	677	ENSPLAG00000014703	ddx55 (ENSPLAG00000014735) #15	eif2b1 (ENSPLAG00000014761) #14	bcl7a (ENSPLAG00000014767)	denr (ENSPLAG00000014807) #32	ENSPLAG00000014821 ##33	ENSPLAG00000014845	ENSPLAG00000014855	ENSPLAG00000014864	HIP1R (ENSPLAG00000014925) #30	fbxo18 (ENSPLAG00000014934)	ENSPLAG00000014946	RILPL1 (ENSPLAG00000014966) #17	kmt5aa (ENSPLAG00000014991)	sbno1 (ENSPLAG00000015015) #21	CDK2AP1 (ENSPLAG00000015035) #22	MPHOSPH9 (ENSPLAG00000015044) #24
Amazon molly	MODERN SPECIES	519			ENSPFOG00000007210	ddx55 (ENSPFOG00000006970) #15	eif2b1 (ENSPFOG00000006870) #14	bcl7a (ENSPFOG00000006770)	denr (ENSPFOG00000023419) #32	ENSPFOG00000024326 ##33	ENSPFOG00000006691	ENSPFOG00000022537	HIP1R (ENSPFOG00000006168) #30	fbxo18 (ENSPFOG00000005889)	RILPL1 (ENSPFOG00000005790) #17	kmt5aa (ENSPFOG00000005772)	sbno1 (ENSPFOG00000005069) #21	CDK2AP1 (ENSPFOG00000004970) #22	MPHOSPH9 (ENSPFOG00000004848) #24	MPHOSPH9 (ENSPFOG00000004735) #24	PITPNM2 (ENSPFOG00000003953) #25	ENSPFOG00000003556	ZSWIM6 (ENSPFOG00000002966)	mat2al (ENSPFOG00000002817)	si:ch73-234b20.5 (ENSPFOG00000022605)	hnrnpd (ENSPFOG00000002596)	enoph1 (ENSPFOG00000002471)	TMEM150C (ENSPFOG00000002468)	sec31a (ENSPFOG00000002042)	lin54 (ENSPFOG00000001836)	cops4 (ENSPFOG00000001653)	plac8.1 (ENSPFOG00000001599)	ADAMTS6 (ENSPFOG00000001100)
Guppy	MODERN SPECIES	442	tmed2 (ENSPREG00000016617) #16	ddx55 (ENSPREG00000016644) #15	eif2b1 (ENSPREG00000016692) #14	bcl7a (ENSPREG00000016721)	denr (ENSPREG00000016795) #32	ENSPREG00000017237	ENSPREG00000017256	ccdc62 (ENSPREG00000017283)	ENSPREG00000017352	HIP1R (ENSPREG00000017426) #30	fbxo18 (ENSPREG00000017674)	ENSPREG00000017695	RILPL1 (ENSPREG00000017717) #17	kmt5aa (ENSPREG00000017727)	sbno1 (ENSPREG00000017746) #21	CDK2AP1 (ENSPREG00000017829) #22	MPHOSPH9 (ENSPREG00000017844) #24	PITPNM2 (ENSPREG00000017883) #25	ENSPREG00000017971	ZSWIM6 (ENSPREG00000018037)	mat2al (ENSPREG00000018065)	si:ch73-234b20.5 (ENSPREG00000018075)	hnrnpd (ENSPREG00000018081)	enoph1 (ENSPREG00000018093)	TMEM150C (ENSPREG00000018106)	sec31a (ENSPREG00000018133)	lin54 (ENSPREG00000018198)	cops4 (ENSPREG00000018229)	plac8.1 (ENSPREG00000018260)	ADAMTS6 (ENSPREG00000018308)	ENSPREG00000018347
Platyfish	MODERN SPECIES	22	ENSXMAG00000028412	ddx55 (ENSXMAG00000011731) #15	eif2b1 (ENSXMAG00000027972) #14	bcl7a (ENSXMAG00000019251)	denr (ENSXMAG00000019247) #32	ENSXMAG00000019423 ##33	ENSXMAG00000023484	ENSXMAG00000027377	ENSXMAG00000019237	HIP1R (ENSXMAG00000019203) #30	fbxo18 (ENSXMAG00000019200)	ENSXMAG00000022072	RILPL1 (ENSXMAG00000002132) #17	kmt5aa (ENSXMAG00000002138)	sbno1 (ENSXMAG00000002140) #21	CDK2AP1 (ENSXMAG00000021983) #22	MPHOSPH9 (ENSXMAG00000019189) #24	PITPNM2 (ENSXMAG00000019185) #25	KIF2A (ENSXMAG00000000740)	ZSWIM6 (ENSXMAG00000019169)	mat2al (ENSXMAG00000019163)	si:ch73-234b20.5 (ENSXMAG00000021022)	enoph1 (ENSXMAG00000019149)	hnrnpd (ENSXMAG00000019151)	TMEM150C (ENSXMAG00000029119)	sec31a (ENSXMAG00000019118)	lin54 (ENSXMAG00000019104)	cops4 (ENSXMAG00000019092)	plac8.1 (ENSXMAG00000021018)	ADAMTS6 (ENSXMAG00000019046)	ENSXMAG00000028220
NAME_4	ANCESTRAL SPECIES		ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00390000011669	ENSGT00970000193629.b	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
Mummichog	MODERN SPECIES	2267	xpo7 (ENSFHEG00000007999)	ddx55 (ENSFHEG00000007912) #15	eif2b1 (ENSFHEG00000007837) #14	bcl7a (ENSFHEG00000007792)	ENSFHEG00000007782	ENSFHEG00000007767	ENSFHEG00000007739 ##33	denr (ENSFHEG00000007729) #32	ENSFHEG00000007683	HIP1R (ENSFHEG00000007666) #30	fbxo18 (ENSFHEG00000007533)	ENSFHEG00000007491	RILPL1 (ENSFHEG00000007463) #17	kmt5aa (ENSFHEG00000007384)	sbno1 (ENSFHEG00000007360) #21	CDK2AP1 (ENSFHEG00000007190) #22	MPHOSPH9 (ENSFHEG00000007151) #24	PITPNM2 (ENSFHEG00000007121) #25	KIF2A (ENSFHEG00000007066)	ZSWIM6 (ENSFHEG00000006963)	mat2al (ENSFHEG00000006874)	si:ch73-234b20.5 (ENSFHEG00000006846)	hnrnpd (ENSFHEG00000006838)	enoph1 (ENSFHEG00000006792)	sec31a (ENSFHEG00000006753)	lin54 (ENSFHEG00000006513)	cops4 (ENSFHEG00000006500)	plac8.1 (ENSFHEG00000006414)	ADAMTS6 (ENSFHEG00000006381)	cwc27 (ENSFHEG00000006320)	ppwd1 (ENSFHEG00000006293)
Sheepshead minnow	MODERN SPECIES	254	tmed2 (ENSCVAG00000006539) #16	ENSCVAG00000006579	ddx55 (ENSCVAG00000006635) #15	eif2b1 (ENSCVAG00000006658) #14	bcl7a (ENSCVAG00000006665)	ENSCVAG00000006679	ENSCVAG00000006693	ENSCVAG00000006706 ##33	denr (ENSCVAG00000006732) #32	ENSCVAG00000006790	HIP1R (ENSCVAG00000006810) #30	fbxo18 (ENSCVAG00000006828)	RILPL1 (ENSCVAG00000006916) #17	kmt5aa (ENSCVAG00000006925)	sbno1 (ENSCVAG00000007038) #21	CDK2AP1 (ENSCVAG00000007053) #22	MPHOSPH9 (ENSCVAG00000007077) #24	PITPNM2 (ENSCVAG00000007154) #25	ENSCVAG00000007178	ENSCVAG00000007186	sass6 (ENSCVAG00000007331)
Aplocheiloidei	ANCESTRAL SPECIES	5								ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
Turquoise killifish	MODERN SPECIES	1611	cel.1 (ENSNFUG00015004407)	GTF3C5 (ENSNFUG00015004429)	tsc1b (ENSNFUG00015004498)	ENSNFUG00015004517	GTF3C4 (ENSNFUG00015004524)	BARHL1B (ENSNFUG00015004531)	ENSNFUG00015004538	ENSNFUG00015004541 ##33	denr (ENSNFUG00015004547) #32	ENSNFUG00015004551	ENSNFUG00015004556	HIP1R (ENSNFUG00015004565) #30	ENSNFUG00015004589	RILPL1 (ENSNFUG00015004597) #17	kmt5aa (ENSNFUG00015004608)	CDK2AP1 (ENSNFUG00015004889) #22	ENSNFUG00015004907	CUTA (ENSNFUG00015004913)	CACNG2 (ENSNFUG00015004917)	IFT27 (ENSNFUG00015004932)	SYNGR1 (ENSNFUG00015004952)	TAB1 (ENSNFUG00015005011)	MGAT3 (ENSNFUG00015005225)	CABZ01084570.1 (ENSNFUG00015005234)	TMPRSS6 (ENSNFUG00015005248)	ENSNFUG00015005285	CABZ01084579.1 (ENSNFUG00015005292)	ENSNFUG00015005294	atf4a (ENSNFUG00015005300)	SUN5 (ENSNFUG00015005315)	ENSNFUG00015005328
Mangrove rivulus	MODERN SPECIES	320											ENSKMAG00000009993 #30	RILPL1 (ENSKMAG00000009923) #17	ENSKMAG00000009893	kmt5aa (ENSKMAG00000009875)	sbno1 (ENSKMAG00000009696) #21	CDK2AP1 (ENSKMAG00000009647) #22	MPHOSPH9 (ENSKMAG00000009608) #24	PITPNM2 (ENSKMAG00000009457) #25
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Cichlidae	ANCESTRAL SPECIES	10	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Nile tilapia	MODERN SPECIES	19	ENSONIG00000015299	ptpn11a (ENSONIG00000015302)	tmed2 (ENSONIG00000030307) #16	ddx55 (ENSONIG00000015311) #15	eif2b1 (ENSONIG00000039964) #14	bcl7a (ENSONIG00000015318)	ENSONIG00000037058	ENSONIG00000031937	ENSONIG00000021001 ##33	denr (ENSONIG00000015319) #32	ccdc62 (ENSONIG00000015323)	ENSONIG00000015326 #30	RILPL1 (ENSONIG00000015346) #17	kmt5aa (ENSONIG00000032617)	sbno1 (ENSONIG00000015348) #21	CDK2AP1 (ENSONIG00000042866) #22	MPHOSPH9 (ENSONIG00000015368) #24	PITPNM2 (ENSONIG00000015369) #25	KIF2A (ENSONIG00000015376)	ZSWIM6 (ENSONIG00000015381)	mat2al (ENSONIG00000015385)	si:ch73-234b20.5 (ENSONIG00000015389)	hnrnpd (ENSONIG00000015390)	enoph1 (ENSONIG00000015392)	TMEM150C (ENSONIG00000036344)	sec31a (ENSONIG00000015395)	lin54 (ENSONIG00000015402)	cops4 (ENSONIG00000015405)	plac8.1 (ENSONIG00000015410)	ADAMTS6 (ENSONIG00000015412)	cwc27 (ENSONIG00000015415)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Lyretail cichlid	MODERN SPECIES	419	ENSNBRG00000018672	ptpn11a (ENSNBRG00000018685)	tmed2 (ENSNBRG00000018725) #16	ddx55 (ENSNBRG00000018748) #15	eif2b1 (ENSNBRG00000018808) #14	bcl7a (ENSNBRG00000018831)	ENSNBRG00000018840	ENSNBRG00000018855	ENSNBRG00000018875 ##33	denr (ENSNBRG00000018898) #32	ccdc62 (ENSNBRG00000018935)	HIP1R (ENSNBRG00000019017) #30	RILPL1 (ENSNBRG00000019084) #17	kmt5aa (ENSNBRG00000019148)	sbno1 (ENSNBRG00000019189) #21	CDK2AP1 (ENSNBRG00000019255) #22	PITPNM2 (ENSNBRG00000019267) #25	KIF2A (ENSNBRG00000019346)	ZSWIM6 (ENSNBRG00000019399)	mat2al (ENSNBRG00000019485)	si:ch73-234b20.5 (ENSNBRG00000019537)	hnrnpd (ENSNBRG00000019548)	enoph1 (ENSNBRG00000019572)	TMEM150C (ENSNBRG00000019597)	sec31a (ENSNBRG00000019633)	lin54 (ENSNBRG00000019683)	cops4 (ENSNBRG00000019754)	plac8.1 (ENSNBRG00000019785)	ADAMTS6 (ENSNBRG00000019825)	cwc27 (ENSNBRG00000019906)	ppwd1 (ENSNBRG00000019956)
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Burton s mouthbrooder	MODERN SPECIES	757	ENSHBUG00000011375	ptpn11a (ENSHBUG00000011391)	tmed2 (ENSHBUG00000011429) #16	ddx55 (ENSHBUG00000011523) #15	eif2b1 (ENSHBUG00000011487) #14	bcl7a (ENSHBUG00000011531)	ENSHBUG00000011541	ENSHBUG00000011570	ENSHBUG00000011571 ##33	denr (ENSHBUG00000011606) #32	ccdc62 (ENSHBUG00000011729)	ENSHBUG00000011760 #30	RILPL1 (ENSHBUG00000011811) #17	kmt5aa (ENSHBUG00000011847)	sbno1 (ENSHBUG00000011910) #21	CDK2AP1 (ENSHBUG00000011928) #22	ENSHBUG00000011948	MPHOSPH9 (ENSHBUG00000011955) #24	PITPNM2 (ENSHBUG00000012161) #25	KIF2A (ENSHBUG00000000854)
Haplochromini_A	ANCESTRAL SPECIES	12	ENSGT00940000157468.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
P. nyererei	MODERN SPECIES	297	ENSPNYG00000003570	ptpn11a (ENSPNYG00000003588)	tmed2 (ENSPNYG00000003632) #16	ddx55 (ENSPNYG00000003669) #15	eif2b1 (ENSPNYG00000003720) #14	bcl7a (ENSPNYG00000003757)	ENSPNYG00000003773	ENSPNYG00000003789	ENSPNYG00000003810 ##33	denr (ENSPNYG00000003833) #32	ENSPNYG00000003883	HIP1R (ENSPNYG00000003944) #30	RILPL1 (ENSPNYG00000004220) #17	kmt5aa (ENSPNYG00000004269)	sbno1 (ENSPNYG00000004291) #21	CDK2AP1 (ENSPNYG00000004423) #22	MPHOSPH9 (ENSPNYG00000004444) #24	PITPNM2 (ENSPNYG00000004501) #25	KIF2A (ENSPNYG00000004708)	ZSWIM6 (ENSPNYG00000004769)	mat2al (ENSPNYG00000004824)	si:ch73-234b20.5 (ENSPNYG00000004865)	hnrnpd (ENSPNYG00000004884)	enoph1 (ENSPNYG00000004899)	TMEM150C (ENSPNYG00000004914)	sec31a (ENSPNYG00000004982)	lin54 (ENSPNYG00000005193)	cops4 (ENSPNYG00000005262)	ADAMTS6 (ENSPNYG00000005317)	cwc27 (ENSPNYG00000005384)	ppwd1 (ENSPNYG00000005473)
Haplochromini_B	ANCESTRAL SPECIES	4	ENSGT00940000157468.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B	ENSGT00940000155143 #16	ENSGT00550000074969 #15	ENSGT00550000074853 #14	ENSGT00390000002172.B	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
Eastern happy	MODERN SPECIES	19	ENSACLG00000024627	ptpn11a (ENSACLG00000024636)	tmed2 (ENSACLG00000024683) #16	ddx55 (ENSACLG00000024691) #15	eif2b1 (ENSACLG00000024725) #14	bcl7a (ENSACLG00000024751)	ENSACLG00000024762	ENSACLG00000024770	ENSACLG00000024783 ##33	denr (ENSACLG00000024786) #32	ccdc62 (ENSACLG00000024796)	HIP1R (ENSACLG00000024813) #30	RILPL1 (ENSACLG00000024901) #17	kmt5aa (ENSACLG00000024907)	sbno1 (ENSACLG00000024913) #21	CDK2AP1 (ENSACLG00000024940) #22	ENSACLG00000024944	PITPNM2 (ENSACLG00000024946) #25	KIF2A (ENSACLG00000025094)	ZSWIM6 (ENSACLG00000025144)	mat2al (ENSACLG00000025185)	si:ch73-234b20.5 (ENSACLG00000025231)	hnrnpd (ENSACLG00000025213)	enoph1 (ENSACLG00000025238)	TMEM150C (ENSACLG00000025250)	sec31a (ENSACLG00000025274)	lin54 (ENSACLG00000025384)	cops4 (ENSACLG00000025422)	plac8.1 (ENSACLG00000025459)	ADAMTS6 (ENSACLG00000025480)	ENSACLG00000025574
Zebra mbuna	MODERN SPECIES	1110	ENSMZEG00005008125	ptpn11a (ENSMZEG00005008096)	tmed2 (ENSMZEG00005008075) #16	ddx55 (ENSMZEG00005008047) #15	eif2b1 (ENSMZEG00005008030) #14	bcl7a (ENSMZEG00005008022)	ENSMZEG00005008017	ENSMZEG00005008002	ENSMZEG00005007993 ##33	denr (ENSMZEG00005007982) #32	ccdc62 (ENSMZEG00005007962)	HIP1R (ENSMZEG00005007870) #30	RILPL1 (ENSMZEG00005007818) #17	kmt5aa (ENSMZEG00005007800)	sbno1 (ENSMZEG00005007769) #21	CDK2AP1 (ENSMZEG00005007739) #22	MPHOSPH9 (ENSMZEG00005007706) #24	PITPNM2 (ENSMZEG00005007677) #25	KIF2A (ENSMZEG00005007647)	ZSWIM6 (ENSMZEG00005007609)	mat2al (ENSMZEG00005007580)	si:ch73-234b20.5 (ENSMZEG00005007567)	hnrnpd (ENSMZEG00005007558)	enoph1 (ENSMZEG00005007539)	TMEM150C (ENSMZEG00005007525)	sec31a (ENSMZEG00005007385)	lin54 (ENSMZEG00005007345)	cops4 (ENSMZEG00005007315)	plac8.1 (ENSMZEG00005007305)	ADAMTS6 (ENSMZEG00005007248)	cwc27 (ENSMZEG00005007217)
Midas cichlid	MODERN SPECIES	633		ptpn11a (ENSACIG00000007294)	tmed2 (ENSACIG00000007567) #16	ddx55 (ENSACIG00000007580) #15	eif2b1 (ENSACIG00000007612) #14	bcl7a (ENSACIG00000007635)	ENSACIG00000007663	ENSACIG00000007676	ENSACIG00000007697 ##33	denr (ENSACIG00000007705) #32	ccdc62 (ENSACIG00000007719)	HIP1R (ENSACIG00000007758) #30	RILPL1 (ENSACIG00000008024) #17	kmt5aa (ENSACIG00000008046)	sbno1 (ENSACIG00000008088) #21	CDK2AP1 (ENSACIG00000008153) #22	ENSACIG00000008166	PITPNM2 (ENSACIG00000008178) #25	KIF2A (ENSACIG00000008231)	ZSWIM6 (ENSACIG00000008279)	mat2al (ENSACIG00000008315)	si:ch73-234b20.5 (ENSACIG00000008334)	hnrnpd (ENSACIG00000008353)	enoph1 (ENSACIG00000008366)	TMEM150C (ENSACIG00000008388)	sec31a (ENSACIG00000008405)
Pomacentridae	ANCESTRAL SPECIES	12									ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.b #25	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571
Bicolor damselfish	MODERN SPECIES	1546													RILPL1 (ENSSPAG00000016492) #17	kmt5aa (ENSSPAG00000016451)	sbno1 (ENSSPAG00000016244) #21	CDK2AP1 (ENSSPAG00000016202) #22	MPHOSPH9 (ENSSPAG00000016166) #24	ENSSPAG00000016128 #25
Pomacentridae_A	ANCESTRAL SPECIES	10									ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
Spiny chromis	MODERN SPECIES	2415															sbno1 (ENSAPOG00000003196) #21	CDK2AP1 (ENSAPOG00000003229) #22	MPHOSPH9 (ENSAPOG00000003260) #24
Amphiprion	ANCESTRAL SPECIES	5													ENSGT00940000157897.a #17	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00940000157329	ENSGT00940000156571	ENSGT00940000155967
Orange clownfish	MODERN SPECIES	7	nudcd3 (ENSAPEG00000006506)	ENSAPEG00000006481	ENSAPEG00000006457	mrps24 (ENSAPEG00000006429)	gnsb (ENSAPEG00000006382)	ndor1 (ENSAPEG00000006359)	ENSAPEG00000006349	denr (ENSAPEG00000006323) #32	ENSAPEG00000006296 ##33	ENSAPEG00000006282	ENSAPEG00000006245 #30	ENSAPEG00000006237	RILPL1 (ENSAPEG00000006199) #17	kmt5aa (ENSAPEG00000006170)	sbno1 (ENSAPEG00000006069) #21	CDK2AP1 (ENSAPEG00000006040) #22	MPHOSPH9 (ENSAPEG00000006011) #24	ENSAPEG00000005956	ENSAPEG00000005926	ENSAPEG00000005915	PITPNM2 (ENSAPEG00000005833) #25	KIF2A (ENSAPEG00000005760)	ENSAPEG00000005741	ZSWIM6 (ENSAPEG00000005669)	mat2al (ENSAPEG00000005632)	si:ch73-234b20.5 (ENSAPEG00000005615)	hnrnpd (ENSAPEG00000005603)	enoph1 (ENSAPEG00000005547)	TMEM150C (ENSAPEG00000005480)	sec31a (ENSAPEG00000005330)	ENSAPEG00000005226
Clown anemonefish	MODERN SPECIES	615											ENSAOCG00000001037	RILPL1 (ENSAOCG00000014917) #17	kmt5aa (ENSAOCG00000001020)	ENSAOCG00000001015	sbno1 (ENSAOCG00000014859) #21	CDK2AP1 (ENSAOCG00000014778) #22	MPHOSPH9 (ENSAOCG00000014755) #24	PITPNM2 (ENSAOCG00000000970) #25	ENSAOCG00000014605	ENSAOCG00000014590	ENSAOCG00000014539	ENSAOCG00000000951	KIF2A (ENSAOCG00000014410)	ZSWIM6 (ENSAOCG00000014289)	mat2al (ENSAOCG00000014248)	si:ch73-234b20.5 (ENSAOCG00000014216)	hnrnpd (ENSAOCG00000014191)	enoph1 (ENSAOCG00000014154)
Tiger tail seahorse	MODERN SPECIES	414							pik3r1 (ENSHCOG00000003396)	ENSHCOG00000003360	bcl7a (ENSHCOG00000003337)	ENSHCOG00000003330	ENSHCOG00000003321	denr (ENSHCOG00000003310) #32	ENSHCOG00000003290 #30	kmt5aa (ENSHCOG00000003265)	sbno1 (ENSHCOG00000003246) #21	CDK2AP1 (ENSHCOG00000003198) #22	MPHOSPH9 (ENSHCOG00000003193) #24	ENSHCOG00000000093 #25	ENSHCOG00000003163 #25	ENSHCOG00000003147	ENSHCOG00000003137	si:ch73-234b20.5 (ENSHCOG00000003113)	hnrnpd (ENSHCOG00000000087)	enoph1 (ENSHCOG00000002977)	sec31a (ENSHCOG00000002960)	lin54 (ENSHCOG00000002894)	cops4 (ENSHCOG00000002860)	plac8.1 (ENSHCOG00000002835)	ADAMTS6 (ENSHCOG00000002822)	cwc27 (ENSHCOG00000002796)	ppwd1 (ENSHCOG00000002786)
Pinecone sodierfish	MODERN SPECIES	3	ptcd2 (ENSMMDG00005022925)	CACFD1 (ENSMMDG00005022929)	garnl3 (ENSMMDG00005022950)	ptges (ENSMMDG00005023143)	usp20 (ENSMMDG00005023168)	RPL7A (ENSMMDG00005023578)	ENSMMDG00005023585	surf1 (ENSMMDG00005023586)	surf6 (ENSMMDG00005023587)	kyat1 (ENSMMDG00005023588)	ENSMMDG00005023592	HIP1R (ENSMMDG00005023600) #30	RILPL1 (ENSMMDG00005023628) #17	kmt5aa (ENSMMDG00005023629)	sbno1 (ENSMMDG00005023638) #21	CDK2AP1 (ENSMMDG00005023759) #22	MPHOSPH9 (ENSMMDG00005023762) #24	PITPNM2 (ENSMMDG00005023769) #25	KIF2A (ENSMMDG00005023786)	ZSWIM6 (ENSMMDG00005001196)	ENSMMDG00005001326	mat2al (ENSMMDG00005001793)	si:ch73-234b20.5 (ENSMMDG00005001958)	hnrnpd (ENSMMDG00005001961)	enoph1 (ENSMMDG00005001964)	TMEM150C (ENSMMDG00005001980)	SCD5 (ENSMMDG00005002022)	sec31a (ENSMMDG00005002969)	ENSMMDG00005002976	lin54 (ENSMMDG00005003009)	cops4 (ENSMMDG00005003373)
Cod	MODERN SPECIES	10	ENSGMOG00000017499	ENSGMOG00000017516	ptpn11a (ENSGMOG00000017724)	tmed2 (ENSGMOG00000022955) #16	ddx55 (ENSGMOG00000017762) #15	EIF2B1 (ENSGMOG00000017803) #14	ENSGMOG00000017818	ENSGMOG00000027051	ENSGMOG00000019828 ##33	ENSGMOG00000017892 #32	ENSGMOG00000030757	ENSGMOG00000017913 #30	ENSGMOG00000018198 #17	kmt5aa (ENSGMOG00000030005)	SBNO1 (ENSGMOG00000018229) #21	CDK2AP1 (ENSGMOG00000029907) #22	ENSGMOG00000029750	ENSGMOG00000025118 #24	PITPNM2 (ENSGMOG00000018331) #25	ENSGMOG00000018385	ENSGMOG00000018424	si:ch73-234b20.5 (ENSGMOG00000025085)	hnrnpd (ENSGMOG00000018481)	enoph1 (ENSGMOG00000018492)	TMEM150C (ENSGMOG00000018512)	sec31a (ENSGMOG00000018568)	LIN54 (ENSGMOG00000018604)	ENSGMOG00000018624	ENSGMOG00000018638	ENSGMOG00000018645	ENSGMOG00000018678
Protacanthopterygii	ANCESTRAL SPECIES	36												ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00940000178081	ENSGT00500000044984 #24	ENSGT00940000164860.c	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.a.a.f	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914.ab	ENSGT00940000154426	ENSGT00440000039914.`b	ENSGT01030000234578.A.a	ENSGT00940000162090
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	644							ENSGT00390000002172.B.a.a	ENSGT00940000155122.b.bc.a	ENSGT00990000203619.A.b.b.b.b.a.b.i ##33	ENSGT00390000014349.b #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a.g #17	ENSGT00940000163293.c.b.c	ENSGT00940000155449.u #21	ENSGT00940000155149.jc.a.a #22	ENSGT00500000044984.r #24	ENSGT00940000164860.c	ENSGT00940000153849.a.a.b.c #25	ENSGT00940000155570.t.f
Huchen	MODERN SPECIES	1112						BCL7A (ENSHHUG00000004394)	ENSHHUG00000004377	ENSHHUG00000004338	ENSHHUG00000004336 ##33	denr (ENSHHUG00000004230) #32	ENSHHUG00000004218	HIP1R (ENSHHUG00000004047) #30	RILPL1 (ENSHHUG00000004029) #17	kmt5aa (ENSHHUG00000004028)	sbno1 (ENSHHUG00000003363) #21	CDK2AP1 (ENSHHUG00000003298) #22	MPHOSPH9 (ENSHHUG00000003289) #24	ENSHHUG00000003196	ENSHHUG00000003137 #25	ENSHHUG00000003102 #25	ENSHHUG00000003093
Salmoninae_a	ANCESTRAL SPECIES	87	ENSGT00950000183174.A.c	ENSGT00940000155101.e.j	ENSGT00940000157468.b.o	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a #16	ENSGT00390000002172.B.a.a	ENSGT00940000155122.b.bc.a	ENSGT00990000203619.A.b.b.b.b.a.b.i ##33	ENSGT00390000014349.b.a #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a.g #17	ENSGT00940000163293.c.b.c	ENSGT00940000155449.u #21	ENSGT00940000155149.jc.a.a #22	ENSGT00500000044984.r #24	ENSGT00940000153849.a.a.b.c #25	ENSGT00940000155570.t.e.a	ENSGT00940000155496.a.a.f.a.a	ENSGT00940000154486.b.a.a.b.e.a.a.b.b	ENSGT00510000047733.x
Oncorhynchus	ANCESTRAL SPECIES	67	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a #16	ENSGT00390000002172.B.a.a	ENSGT00940000155122.b.bc.a	ENSGT00990000203619.A.b.b.b.b.a.b.i.a ##33	ENSGT00390000014349.b.b #32	ENSGT00990000203619.A.b.b.b.b.a.b.i.b ##33	ENSGT00390000014349.b.a #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a.g #17	ENSGT01000000220453.B	ENSGT00940000163293.c.b.c	ENSGT00940000155449.u #21	ENSGT00940000155149.jc.a.a #22	ENSGT00500000044984.r #24	ENSGT00940000153849.a.a.b.c #25	ENSGT00940000155570.t.e.a	ENSGT00940000155496.a.a.f.a.a	ENSGT00940000154486.b.a.a.b.e.a.a.b.b	ENSGT00510000047733.x
Oncorhynchus_a	ANCESTRAL SPECIES	74	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a #16	ENSGT00390000002172.B.a.a	ENSGT00940000155122.b.bc.a	ENSGT00990000203619.A.b.b.b.b.a.b.i.a ##33	ENSGT00390000014349.b.b #32	ENSGT00990000203619.A.b.b.b.b.a.b.i.b ##33	ENSGT00390000014349.b.a #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a.g #17	ENSGT01000000220453.B	ENSGT00940000163293.c.b.c	ENSGT00940000155449.u #21	ENSGT00940000155149.jc.a.a #22	ENSGT00500000044984.r #24	ENSGT00940000153849.a.a.b.c #25	ENSGT00940000155570.t.e.a	ENSGT00940000155496.a.a.f.a.a	ENSGT00940000154486.b.a.a.b.e.a.a.b.b	ENSGT00510000047733.x	ENSGT00940000154426.g
Chinook salmon	MODERN SPECIES	12	ENSOTSG00005037819	NUP54 (ENSOTSG00005037824)	PPEF2 (ENSOTSG00005037834)	ENSOTSG00005038094	BCL7A (ENSOTSG00005038095)	ENSOTSG00005038096 ##33	denr (ENSOTSG00005038097) #32	ENSOTSG00005038174	ENSOTSG00005038177 ##33	denr (ENSOTSG00005038179) #32	ENSOTSG00005038197	HIP1R (ENSOTSG00005038206) #30	RILPL1 (ENSOTSG00005040268) #17	kmt5aa (ENSOTSG00005040273)	sbno1 (ENSOTSG00005040327) #21	CDK2AP1 (ENSOTSG00005044679) #22	ENSOTSG00005044680 #24	PITPNM2 (ENSOTSG00005044683) #25	KIF2A (ENSOTSG00005045476)	ZSWIM6 (ENSOTSG00005046065)	ENSOTSG00005046142	ENSOTSG00005046154	HNRNPD (ENSOTSG00005046156)	ENSOTSG00005046157	enoph1 (ENSOTSG00005046160)	TMEM150C (ENSOTSG00005046161)	ENSOTSG00005046164	sec31a (ENSOTSG00005046166)	lin54 (ENSOTSG00005046176)	cops4 (ENSOTSG00005046196)	plac8.1 (ENSOTSG00005046202)
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000000987	ENSOMYG00000000995	ENSOMYG00000001106	tmed2 (ENSOMYG00000001181) #16	ENSOMYG00000001197	ENSOMYG00000001516 ##33	ENSOMYG00000001476 #32	ENSOMYG00000001231 ##33	ENSOMYG00000058786 #32	ENSOMYG00000001548	ENSOMYG00000002542 #30	ENSOMYG00000003166 #17	ENSOMYG00000003236	kmt5aa (ENSOMYG00000003262)	ENSOMYG00000007077 #21	ENSOMYG00000013783 #22	ENSOMYG00000055276	ENSOMYG00000014145 #25	ENSOMYG00000016978	ENSOMYG00000017505	ENSOMYG00000057598	ENSOMYG00000076747	ENSOMYG00000017971	HNRNPD (ENSOMYG00000070998)	hnrnpdl (ENSOMYG00000017992)	enoph1 (ENSOMYG00000018003)	TMEM150C (ENSOMYG00000018031)	SCD5 (ENSOMYG00000018048)	sec31a (ENSOMYG00000018142)	lin54 (ENSOMYG00000019729)	COPS4 (ENSOMYG00000020097)
Salmo	ANCESTRAL SPECIES	54	ENSGT00950000183174.A.c	ENSGT00940000155101.e.j	ENSGT00940000157468.b.o	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a #16	ENSGT00390000002172.B.a.a.a	ENSGT00940000155122.b.bc.a	ENSGT00990000203619.A.b.b.b.b.a.b.i ##33	ENSGT00390000014349.b.a #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a.g #17	ENSGT00940000163293.c.b.c	ENSGT00940000155449.u #21	ENSGT00940000155149.jc.a.a #22	ENSGT00500000044984.r #24	ENSGT00940000153849.a.a.b.c #25	ENSGT00940000155570.t.e.a	ENSGT00940000155496.a.a.f.a.a	ENSGT00940000154486.b.a.a.b.e.a.a.b.b	ENSGT00510000047733.x	ENSGT00940000154426.g	ENSGT00440000039914.`b	ENSGT01030000234578.A.a.j	ENSGT00940000162090.c	ENSGT00390000003175.a.b.j	ENSGT00940000155881.i	ENSGT00940000153510.b.m	ENSGT00940000157329.i	ENSGT00940000156571.ab.b
Atlantic salmon	MODERN SPECIES		ENSSSAG00000080800	ENSSSAG00000106460	ENSSSAG00000112958	ENSSSAG00000080542	tmed2 (ENSSSAG00000083448) #16	ptpn11a (ENSSSAG00000086516)	ENSSSAG00000119820	ENSSSAG00000110143	ENSSSAG00000119962 ##33	ENSSSAG00000080481 #32	ENSSSAG00000080479	ENSSSAG00000080464 #30	ENSSSAG00000080448 #17	kmt5aa (ENSSSAG00000080440)	sbno1 (ENSSSAG00000079755) #21	CDK2AP1 (ENSSSAG00000079661) #22	ENSSSAG00000079650 #24	ENSSSAG00000102116	PITPNM2 (ENSSSAG00000079317) #25	ENSSSAG00000117480	ENSSSAG00000096567	ENSSSAG00000093344	ENSSSAG00000078737	ENSSSAG00000099062	HNRNPD (ENSSSAG00000078731)	hnrnpdl (ENSSSAG00000081790)	enoph (ENSSSAG00000055658)	TMEM150C (ENSSSAG00000078720)	sec31a (ENSSSAG00000074760)	lin54 (ENSSSAG00000074551)	COPS4 (ENSSSAG00000074531)
Salmoninae	ANCESTRAL SPECIES	179	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b #16	ENSGT00550000074969 #15	ENSGT00550000074853.d #14	ENSGT00390000002172.B.a.b	ENSGT00940000155122.b.bc.b	ENSGT00990000203619.A.b.b.b.b.a.b.j ##33	ENSGT00390000014349.a #32	ENSGT00940000157897.a.h #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b.d	ENSGT00940000155449.v #21	ENSGT00940000155149.jc.b.a #22	ENSGT00940000178081	ENSGT00940000155149.jc.a.b #22	ENSGT00500000044984.q #24	ENSGT00940000153849.a.a.b.d #25	ENSGT00940000155570.t.e.b	ENSGT00940000155496.a.a.f.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b.a	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00940000154426.g	ENSGT00440000039914.`b	ENSGT01030000234578.A.a.j	ENSGT00940000162090.c	ENSGT00390000003175.a.b.j	ENSGT00940000155881.i	ENSGT00940000153510.b.m
Salmoninae_a	ANCESTRAL SPECIES	24	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b #16	ENSGT00550000074969 #15	ENSGT00550000074853.d #14	ENSGT00390000002172.B.a.b	ENSGT00940000155122.b.bc.b	ENSGT00990000203619.A.b.b.b.b.a.b.j ##33	ENSGT00390000014349.a #32	ENSGT00940000157897.a.h #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b.d	ENSGT00940000155449.v #21	ENSGT00940000155149.jc.b.a #22	ENSGT00940000178081	ENSGT00940000155149.jc.a.b #22	ENSGT00500000044984.q #24	ENSGT00940000153849.a.a.b.d #25	ENSGT00940000155570.t.e.b	ENSGT00940000155496.a.a.f.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b.a	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00940000154426.g	ENSGT00440000039914.`b	ENSGT01030000234578.A.a.j	ENSGT00940000162090.c	ENSGT00390000003175.a.b.j	ENSGT00940000155881.i	ENSGT00940000153510.b.m
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b #16	ENSGT00550000074969 #15	ENSGT00550000074853.d #14	ENSGT00390000002172.B.a.b	ENSGT00940000155122.b.bc.b	ENSGT00990000203619.A.b.b.b.b.a.b.j ##33	ENSGT00390000014349.a #32	ENSGT00940000157897.a.h #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b.d	ENSGT00940000155449.v #21	ENSGT00940000155149.jc.b.a #22	ENSGT00940000178081	ENSGT00940000155149.jc.a.b #22	ENSGT00500000044984.q #24	ENSGT00940000153849.a.a.b.d #25	ENSGT00940000155570.t.e.b	ENSGT00940000155496.a.a.f.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b.a	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00940000154426.g	ENSGT00440000039914.`b	ENSGT01030000234578.A.a.j	ENSGT00940000162090.c	ENSGT00390000003175.a.b.j	ENSGT00940000155881.i	ENSGT00940000153510.b.m
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000018084	ENSOMYG00000077170	ptpn11a (ENSOMYG00000018059)	tmed2 (ENSOMYG00000018038) #16	ddx55 (ENSOMYG00000017955) #15	EIF2B1 (ENSOMYG00000017734) #14	ENSOMYG00000017701	ENSOMYG00000017684	ENSOMYG00000001221	ENSOMYG00000017681 ##33	denr (ENSOMYG00000017655) #32	RILPL1 (ENSOMYG00000017616) #17	snrnp35 (ENSOMYG00000017584) #18	kmt5aa (ENSOMYG00000017571)	sbno1 (ENSOMYG00000010222) #21	CDK2AP1 (ENSOMYG00000008164) #22	ENSOMYG00000008135 #24	PITPNM2 (ENSOMYG00000007835) #25	ENSOMYG00000006607	ENSOMYG00000005453	ENSOMYG00000004817	mat2al (ENSOMYG00000004742)	si:ch73-234b20.5 (ENSOMYG00000004681)	hnrnpd (ENSOMYG00000004637)	hnrnpdl (ENSOMYG00000004595)	enoph1 (ENSOMYG00000004563)	TMEM150C (ENSOMYG00000004540)	ENSOMYG00000063982	ENSOMYG00000004369	ENSOMYG00000076729	ENSOMYG00000004148
Salmo	ANCESTRAL SPECIES																	ENSGT00940000155149.jc.a.b #22
Atlantic salmon	MODERN SPECIES	4	pitpnb (ENSSSAG00000080688)	ENSSSAG00000080714	ENSSSAG00000109130	ENSSSAG00000080560	ptpn11a (ENSSSAG00000004427)	tmed2 (ENSSSAG00000108962) #16	ddx55 (ENSSSAG00000005403) #15	EIF2B1 (ENSSSAG00000005551) #14	ENSSSAG00000114897	ENSSSAG00000005975 ##33	denr (ENSSSAG00000005986) #32	rilpl1 (ENSSSAG00000041761) #17	snrnp35 (ENSSSAG00000006055) #18	kmt5aa (ENSSSAG00000006163)	sbno1 (ENSSSAG00000041895) #21	cdka1 (ENSSSAG00000041550) #22	MPHOSPH9 (ENSSSAG00000041658) #24	PITPNM2 (ENSSSAG00000053461) #25	ENSSSAG00000078890	ENSSSAG00000099788	ENSSSAG00000055531	mat2al (ENSSSAG00000055621)	si:ch73-234b20.5 (ENSSSAG00000118448)	hnrnpd (ENSSSAG00000055684)	enoph1 (ENSSSAG00000120380)	HNRDL (ENSSSAG00000055698)	SCD5 (ENSSSAG00000087236)	SEC31A (ENSSSAG00000056097)	lin54 (ENSSSAG00000073397)	cops4 (ENSSSAG00000073417)	PLAC8 (ENSSSAG00000073431)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	179	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b #16	ENSGT00550000074969 #15	ENSGT00550000074853.d #14	ENSGT00390000002172.B.a.b	ENSGT00940000155122.b.bc.b	ENSGT00990000203619.A.b.b.b.b.a.b.j ##33	ENSGT00390000014349.a #32	ENSGT00940000157897.a.h #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b.d	ENSGT00940000155449.v #21	ENSGT00940000155149.jc.b.a #22	ENSGT00940000178081	ENSGT00940000155149.jc.a.b #22	ENSGT00500000044984.q #24	ENSGT00940000153849.a.a.b.d #25	ENSGT00940000155570.t.e.b	ENSGT00940000155496.a.a.f.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b.a	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00940000154426.g	ENSGT00440000039914.`b	ENSGT01030000234578.A.a.j	ENSGT00940000162090.c	ENSGT00390000003175.a.b.j
Huchen	MODERN SPECIES	699	ENSHHUG00000046318	ENSHHUG00000046324	ptpn11a (ENSHHUG00000046331)	tmed2 (ENSHHUG00000046364) #16	ddx55 (ENSHHUG00000046445) #15	EIF2B1 (ENSHHUG00000046619) #14	BCL7A (ENSHHUG00000046816)	ENSHHUG00000046831	ENSHHUG00000046849	ENSHHUG00000046858 ##33	denr (ENSHHUG00000046861) #32	RILPL1 (ENSHHUG00000046866) #17	snrnp35 (ENSHHUG00000046881) #18	kmt5aa (ENSHHUG00000046884)	sbno1 (ENSHHUG00000046894) #21	CDK2AP1 (ENSHHUG00000047166) #22	ENSHHUG00000047177 #24	ENSHHUG00000047183 #24	PITPNM2 (ENSHHUG00000047196) #25	KIF2A (ENSHHUG00000047206)	ZSWIM6 (ENSHHUG00000047249)
Salmoninae_a	ANCESTRAL SPECIES	24	ENSGT00940000156428.bd	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b #16	ENSGT00550000074969 #15	ENSGT00550000074853.d #14	ENSGT00390000002172.B.a.b	ENSGT00940000155122.b.bc.b	ENSGT00990000203619.A.b.b.b.b.a.b.j ##33	ENSGT00390000014349.a #32	ENSGT00940000157897.a.h #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b.d	ENSGT00940000155449.v #21	ENSGT00940000155149.jc.b.a #22	ENSGT00940000178081	ENSGT00940000155149.jc.a.b #22	ENSGT00500000044984.q #24	ENSGT00940000153849.a.a.b.d #25	ENSGT00940000155570.t.e.b	ENSGT00940000155496.a.a.f.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b.a	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00940000154426.g	ENSGT00440000039914.`b	ENSGT01030000234578.A.a.j	ENSGT00940000162090.c	ENSGT00390000003175.a.b.j
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00940000155101.e.i	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b #16	ENSGT00550000074969 #15	ENSGT00550000074853.d #14	ENSGT00390000002172.B.a.b	ENSGT00940000155122.b.bc.b	ENSGT00990000203619.A.b.b.b.b.a.b.j ##33	ENSGT00390000014349.a #32	ENSGT00940000157897.a.h #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b.d	ENSGT00940000155449.v #21	ENSGT00940000155149.jc.b.a #22	ENSGT00940000178081	ENSGT00940000155149.jc.a.b #22	ENSGT00500000044984.q #24	ENSGT00940000153849.a.a.b.d #25	ENSGT00940000155570.t.e.b	ENSGT00940000155496.a.a.f.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b.a	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00940000154426.g	ENSGT00440000039914.`b	ENSGT01030000234578.A.a.j	ENSGT00940000162090.c	ENSGT00390000003175.a.b.j
Oncorhynchus_a	ANCESTRAL SPECIES	19	ENSGT00940000155101.e.i	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b #16	ENSGT00550000074969 #15	ENSGT00550000074853.d #14	ENSGT00390000002172.B.a.b	ENSGT00940000155122.b.bc.b	ENSGT00990000203619.A.b.b.b.b.a.b.j ##33	ENSGT00390000014349.a #32	ENSGT00940000157897.a.h #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b.d	ENSGT00940000155449.v #21	ENSGT00940000155149.jc.b.a #22	ENSGT00940000178081	ENSGT00500000044984.q #24	ENSGT00940000153849.a.a.b.d #25	ENSGT00940000155570.t.e.b	ENSGT00940000155496.a.a.f.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b.a	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914.`b	ENSGT01030000234578.A.a.j	ENSGT00940000162090.c	ENSGT00390000003175.a.b.j	ENSGT00940000155881.i	ENSGT00940000153510.b.m
Chinook salmon	MODERN SPECIES	33	pitpnb (ENSOTSG00005042687)	pla2g3 (ENSOTSG00005042681)	ENSOTSG00005042679	ptpn11a (ENSOTSG00005042626)	tmed2 (ENSOTSG00005042620) #16	ddx55 (ENSOTSG00005042618) #15	EIF2B1 (ENSOTSG00005042607) #14	ENSOTSG00005042606	ENSOTSG00005042602	ENSOTSG00005042600 ##33	denr (ENSOTSG00005042597) #32	RILPL1 (ENSOTSG00005042596) #17	snrnp35 (ENSOTSG00005042593) #18	kmt5aa (ENSOTSG00005042592)	sbno1 (ENSOTSG00005036204) #21	CDK2AP1 (ENSOTSG00005036111) #22	ENSOTSG00005036110	PITPNM2 (ENSOTSG00005036061) #25	KIF2A (ENSOTSG00005030532)	ZSWIM6 (ENSOTSG00005030524)	ENSOTSG00005030523	mat2al (ENSOTSG00005030521)	si:ch73-234b20.5 (ENSOTSG00005030520)	hnrnpd (ENSOTSG00005030515)	hnrnpdl (ENSOTSG00005030513)	enoph1 (ENSOTSG00005030509)	TMEM150C (ENSOTSG00005030501)	SCD5 (ENSOTSG00005030498)	lin54 (ENSOTSG00005030493)	cops4 (ENSOTSG00005030475)	ENSOTSG00005030468
Coho salmon	MODERN SPECIES	26	pla2g3 (ENSOKIG00005002265)	ENSOKIG00005002245	ptpn11a (ENSOKIG00005002033)	tmed2 (ENSOKIG00005001942) #16	ddx55 (ENSOKIG00005001805) #15	EIF2B1 (ENSOKIG00005001705) #14	ENSOKIG00005001690	ELOVL5 (ENSOKIG00005001659)	ENSOKIG00005001630	ENSOKIG00005001628 ##33	denr (ENSOKIG00005001616) #32	RILPL1 (ENSOKIG00005001582) #17	snrnp35 (ENSOKIG00005001566) #18	kmt5aa (ENSOKIG00005001559)	sbno1 (ENSOKIG00005000709) #21	CDK2AP1 (ENSOKIG00005000166) #22	ENSOKIG00005000148	MPHOSPH9 (ENSOKIG00005000125) #24	PITPNM2 (ENSOKIG00005011135) #25	ENSOKIG00005011054	ENSOKIG00005010736	ENSOKIG00005010703	ZSWIM6 (ENSOKIG00005010627)	ENSOKIG00005010600	ENSOKIG00005010595	mat2al (ENSOKIG00005010586)	si:ch73-234b20.5 (ENSOKIG00005010578)	hnrnpd (ENSOKIG00005010566)	hnrnpdl (ENSOKIG00005010540)	enoph1 (ENSOKIG00005010523)	TMEM150C (ENSOKIG00005010512)
Salmo	ANCESTRAL SPECIES	13	ENSGT00940000156428.bd	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b #16	ENSGT00550000074969 #15	ENSGT00550000074853.d #14	ENSGT00390000002172.B.a.b	ENSGT00940000155122.b.bc.b	ENSGT00990000203619.A.b.b.b.b.a.b.j ##33	ENSGT00390000014349.a #32	ENSGT00940000157897.a.h #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b.d	ENSGT00940000155449.v #21	ENSGT00940000155149.jc.b.a #22	ENSGT00500000044984.q #24	ENSGT00940000153849.a.a.b.d #25	ENSGT00940000155570.t.e.b	ENSGT00940000155496.a.a.f.a.b	ENSGT00940000154486.b.a.a.b.e.a.a.b.a	ENSGT00950000183185.c.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00440000039914.ab	ENSGT00940000154426.h	ENSGT01030000234578.A.a.i	ENSGT00940000162090.d	ENSGT00390000003175.a.b.i	ENSGT00940000155881.j	ENSGT00940000153510.b.n
River trout	MODERN SPECIES	6	ENSSTUG00000015458	ENSSTUG00000015480	ENSSTUG00000015699	ptpn11a (ENSSTUG00000015715)	tmed2 (ENSSTUG00000015968) #16	ddx55 (ENSSTUG00000015993) #15	EIF2B1 (ENSSTUG00000016163) #14	ENSSTUG00000016440	ENSSTUG00000016454	ENSSTUG00000016461 ##33	denr (ENSSTUG00000016464) #32	RILPL1 (ENSSTUG00000016483) #17	snrnp35 (ENSSTUG00000016535) #18	kmt5aa (ENSSTUG00000016545)	sbno1 (ENSSTUG00000016677) #21	CDK2AP1 (ENSSTUG00000021697) #22	MPHOSPH9 (ENSSTUG00000021718) #24	PITPNM2 (ENSSTUG00000021826) #25	ENSSTUG00000023954	ZSWIM6 (ENSSTUG00000024436)	ENSSTUG00000024714	mat2al (ENSSTUG00000024727)	ENSSTUG00000024755	si:ch73-234b20.5 (ENSSTUG00000024765)	hnrnpd (ENSSTUG00000024774)	enoph1 (ENSSTUG00000024842)	hnrnpdl (ENSSTUG00000024856)	TMEM150C (ENSSTUG00000024873)	SCD5 (ENSSTUG00000024905)	sec31a (ENSSTUG00000026000)	lin54 (ENSSTUG00000027395)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000155149.jc.b.b #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000155149.jc.b.b #22
Salmo	ANCESTRAL SPECIES																	ENSGT00940000155149.jc.b.b #22
River trout	MODERN SPECIES	15	ENSSTUG00000025253	ENSSTUG00000024432	ENSSTUG00000024380	ptpn11a (ENSSTUG00000024087)	tmed2 (ENSSTUG00000024036) #16	ENSSTUG00000024023	ENSSTUG00000024014	ENSSTUG00000024010 ##33	denr (ENSSTUG00000023820) #32	ENSSTUG00000023793	HIP1R (ENSSTUG00000023701) #30	RILPL1 (ENSSTUG00000023621) #17	rnf170 (ENSSTUG00000023612)	kmt5aa (ENSSTUG00000023595)	sbno1 (ENSSTUG00000017351) #21	CDK2AP1 (ENSSTUG00000017150) #22	MPHOSPH9 (ENSSTUG00000017112) #24	PITPNM2 (ENSSTUG00000016889) #25	KIF2A (ENSSTUG00000015810)	ZSWIM6 (ENSSTUG00000015026)	ENSSTUG00000014984	HNRNPD (ENSSTUG00000014967)	hnrnpdl (ENSSTUG00000014962)	enoph1 (ENSSTUG00000014951)	TMEM150C (ENSSTUG00000014936)	SCD5 (ENSSTUG00000014929)	sec31a (ENSSTUG00000013337)	lin54 (ENSSTUG00000012887)	cops4 (ENSSTUG00000012760)	PLAC8 (ENSSTUG00000012753)	ADAMTS6 (ENSSTUG00000012203)
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000155149.jc.b.b #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000155149.jc.b.b #22
Coho salmon	MODERN SPECIES	15	ENSOKIG00005021216	PTPN11 (ENSOKIG00005020915)	ENSOKIG00005020828 #16	BCL7A (ENSOKIG00005020816)	ENSOKIG00005020800	ENSOKIG00005020784 ##33	DENR (ENSOKIG00005020663) #32	ENSOKIG00005020652 ##33	denr (ENSOKIG00005020631) #32	ENSOKIG00005020614	HIP1R (ENSOKIG00005020305) #30	RILPL1 (ENSOKIG00005020204) #17	ENSOKIG00005020181	kmt5aa (ENSOKIG00005020168)	SBNO1 (ENSOKIG00005019405) #21	ENSOKIG00005019246 #22	ENSOKIG00005019234	PITPNM2 (ENSOKIG00005019081) #25	KIF2A (ENSOKIG00005017428)	ZSWIM6 (ENSOKIG00005016943)	ENSOKIG00005016885	ENSOKIG00005016868	hnrnpdl (ENSOKIG00005016837)	ENSOKIG00005016830	enoph1 (ENSOKIG00005016806)	TMEM150C (ENSOKIG00005016778)	SCD5 (ENSOKIG00005015963)	sec31a (ENSOKIG00005015034)	LIN54 (ENSOKIG00005014104)	ENSOKIG00005014052	PLAC8 (ENSOKIG00005014047)
Salmoninae	ANCESTRAL SPECIES	13	ENSGT00940000154495.b.b.a	ENSGT00940000154284.b	ENSGT00940000156855.c.b	ENSGT00950000183185.c.a.a.bb.a.b.i	ENSGT00390000001901.b	ENSGT00390000007992.h	ENSGT00390000004147.m	ENSGT00390000002172.B.b.a	ENSGT00940000158691.f	ENSGT00940000155122.a.d	ENSGT00390000011475.i #37	ENSGT00730000111142.o #36	ENSGT00940000153594.c.e.a.f #30	ENSGT00940000160182.l #19	ENSGT00940000163293.c.a.d	ENSGT00940000155149.kc #22	ENSGT00940000153849.a.a.a.a #25	ENSGT00940000164825.h	ENSGT01050000244898.b.a.u	ENSGT00530000063869.B.l	ENSGT00940000161655	ENSGT00940000156855.c.a	ENSGT00950000183185.c.a.a.bb.a.b.j	ENSGT00390000001901.a	ENSGT00390000007992.g	ENSGT00940000164890.b	ENSGT00940000156009.A.c	ENSGT00950000182859.A.a.a.b.v	ENSGT00950000182859.A.a.a.b.u	ENSGT00940000155760.t.a.e	ENSGT00940000168975
Salmoninae_a	ANCESTRAL SPECIES	10	ENSGT00940000165179.b	ENSGT00940000157468.a.a.a.j	ENSGT00940000155165.e	ENSGT00940000155143.k.b #16	ENSGT00550000074853.c.a #14	ENSGT00390000013143 #13	ENSGT00390000004147.m	ENSGT00390000002172.B.b.a	ENSGT00940000158691.f	ENSGT00940000155122.a.d	ENSGT00390000011475.i #37	ENSGT00730000111142.o #36	ENSGT00940000153594.c.e.a.f #30	ENSGT00940000160182.l #19	ENSGT00940000163293.c.a.d	ENSGT00940000155149.kc #22	ENSGT00940000153849.a.a.a.a #25	ENSGT00940000164825.h	ENSGT01050000244898.b.a.u	ENSGT00530000063869.B.l	ENSGT00940000161655	ENSGT00990000210636	ENSGT00940000156855.c.a	ENSGT00950000183185.c.a.a.bb.a.b.j	ENSGT00390000001901.a	ENSGT00390000007992.g	ENSGT00940000164890.b	ENSGT00950000182859.A.a.a.b.v	ENSGT00940000155760.t.a.e	ENSGT00940000168975	ENSGT00940000159932.a.e
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000165179.b	ENSGT00940000157468.a.a.a.j	ENSGT00940000155165.e	ENSGT00940000155143.k.b #16	ENSGT00550000074853.c.a #14	ENSGT00390000013143 #13	ENSGT00390000004147.m	ENSGT00390000002172.B.b.a	ENSGT00940000158691.f	ENSGT00940000155122.a.d	ENSGT00390000011475.i #37	ENSGT00730000111142.o #36	ENSGT00940000153594.c.e.a.f #30	ENSGT00940000160182.l #19	ENSGT00940000163293.c.a.d	ENSGT00940000155149.kc #22	ENSGT00940000153849.a.a.a.a #25	ENSGT00940000164825.h	ENSGT01050000244898.b.a.u	ENSGT00530000063869.B.l	ENSGT00940000154495.b.a.a.a.a	ENSGT00940000161655	ENSGT00990000210636	ENSGT00940000156855.c.a	ENSGT00950000183185.c.a.a.bb.a.b.j	ENSGT00390000001901.a	ENSGT00390000007992.g	ENSGT00940000164890.b	ENSGT00950000182859.A.a.a.b.v	ENSGT00940000155760.t.a.e	ENSGT00940000168975
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000165179.b	ENSGT00940000157468.a.a.a.j	ENSGT00940000155165.e	ENSGT00940000155143.k.b #16	ENSGT00550000074853.c.a #14	ENSGT00390000013143 #13	ENSGT00390000004147.m	ENSGT00390000002172.B.b.a	ENSGT00940000158691.f.a	ENSGT00940000155122.a.d	ENSGT00390000011475.i #37	ENSGT00730000111142.o #36	ENSGT00940000153594.c.e.a.f #30	ENSGT00940000160182.l #19	ENSGT00940000163293.c.a.d	ENSGT00940000155149.kc #22	ENSGT00940000153849.a.a.a.a #25	ENSGT00940000164825.h	ENSGT01050000244898.b.a.u	ENSGT00530000063869.B.l	ENSGT00940000154495.b.a.a.a.a	ENSGT00990000210636	ENSGT00940000156855.c.a	ENSGT00950000183185.c.a.a.bb.a.b.j	ENSGT00390000001901.a	ENSGT00390000007992.g	ENSGT00940000164890.b	ENSGT00950000182859.A.a.a.b.v	ENSGT00940000155760.t.a.e	ENSGT00940000168975	ENSGT00940000159932.a.e
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2907	ENSOTSG00005044354	ENSOTSG00005044353	vps33a (ENSOTSG00005044344)	TMED2 (ENSOTSG00005044336) #16	eif2b1 (ENSOTSG00005044335) #14	gtf2h3 (ENSOTSG00005044332) #13	psmd9 (ENSOTSG00005044330)	bcl7a (ENSOTSG00005044329)	mlxip (ENSOTSG00005044320)	CLIP1 (ENSOTSG00005044314)	zcchc8 (ENSOTSG00005044313) #37	rsrc2 (ENSOTSG00005044312) #36	hip1rb (ENSOTSG00005040590) #30	rilpl2 (ENSOTSG00005040557) #19	ENSOTSG00005040554	CDK2AP1 (ENSOTSG00005040553) #22	PITPNM2 (ENSOTSG00005040416) #25	mthfd2 (ENSOTSG00005040411)	mob1a (ENSOTSG00005040410)	trafd1 (ENSOTSG00005040408)	ENSOTSG00005040406	INPP5J (ENSOTSG00005040404)	MAT2A (ENSOTSG00005040390)	si:ch211-283h6.4 (ENSOTSG00005040384)	usp39 (ENSOTSG00005039461)	sftpbb (ENSOTSG00005039449)
Chinook salmon	MODERN SPECIES	48	ENSOTSG00005043835	RPH3A (ENSOTSG00005043840)	vps33a (ENSOTSG00005043867)	TMED2 (ENSOTSG00005043900) #16	eif2b1 (ENSOTSG00005043902) #14	gtf2h3 (ENSOTSG00005043903) #13	psmd9 (ENSOTSG00005043905)	bcl7a (ENSOTSG00005043907)	mlxip (ENSOTSG00005043908)	CLIP1 (ENSOTSG00005043924)	zcchc8 (ENSOTSG00005044351) #37	rsrc2 (ENSOTSG00005044352) #36	hip1rb (ENSOTSG00005044357) #30	rilpl2 (ENSOTSG00005045233) #19	ENSOTSG00005045234	CDK2AP1 (ENSOTSG00005045235) #22	PITPNM2 (ENSOTSG00005045237) #25	mthfd2 (ENSOTSG00005045288)	mob1a (ENSOTSG00005045291)	trafd1 (ENSOTSG00005045293)	ENSOTSG00005045295	ENSOTSG00005045297	INPP5J (ENSOTSG00005008036)	mat2ab (ENSOTSG00005008080)	usp39 (ENSOTSG00005008089)	si:ch211-283h6.4 (ENSOTSG00005008150)	ENSOTSG00005008151
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000002017	vps33a (ENSOMYG00000002158)	TMED2 (ENSOMYG00000002223) #16	EIF2B1 (ENSOMYG00000002267) #14	gtf2h3 (ENSOMYG00000002385) #13	PSMD9 (ENSOMYG00000002478)	ENSOMYG00000075245	BCL7A (ENSOMYG00000076930)	MLXIP (ENSOMYG00000002770)	CLIP1 (ENSOMYG00000002938)	ENSOMYG00000003055 #37	rsrc2 (ENSOMYG00000003097) #36	ENSOMYG00000004324 #30	ENSOMYG00000005142 #19	ENSOMYG00000005174	ENSOMYG00000005204 #22	ENSOMYG00000005252	ENSOMYG00000005934 #25	ENSOMYG00000006371	ENSOMYG00000006484	ENSOMYG00000006539	ENSOMYG00000006605	ENSOMYG00000006639	ENSOMYG00000006647	ENSOMYG00000052863	ENSOMYG00000047842	ENSOMYG00000006729	usp39 (ENSOMYG00000006991)	si:ch211-283h6.4 (ENSOMYG00000007196)	ENSOMYG00000061983	ENSOMYG00000007222
Salmo	ANCESTRAL SPECIES		ENSGT00940000165179.b	ENSGT00940000157468.a.a.a.j	ENSGT00940000155165.e	ENSGT00940000155143.k.b #16	ENSGT00550000074853.c.a #14	ENSGT00390000013143 #13	ENSGT00390000004147.m	ENSGT00390000002172.B.b.a	ENSGT00940000158691.f	ENSGT00940000155122.a.d	ENSGT00390000011475.i #37	ENSGT00730000111142.o #36	ENSGT00940000153594.c.e.a.f #30	ENSGT00940000160182.l #19	ENSGT00940000163293.c.a.d	ENSGT00940000155149.kc #22	ENSGT00940000153849.a.a.a.a #25	ENSGT00390000009670.i #26	ENSGT00940000164825.h	ENSGT01050000244898.b.a.u	ENSGT00530000063869.B.l	ENSGT00940000161655	ENSGT00990000210636	ENSGT00940000156855.c.a	ENSGT00950000183185.c.a.a.bb.a.b.j	ENSGT00390000001901.a	ENSGT00390000007992.g	ENSGT00940000164890.b	ENSGT00950000182859.A.a.a.b.v	ENSGT00940000155760.t.a.e	ENSGT00940000168975
Atlantic salmon	MODERN SPECIES	16	ENSSSAG00000075863	ENSSSAG00000075729	vps33a (ENSSSAG00000075713)	TMED2 (ENSSSAG00000085597) #16	EIF2B1 (ENSSSAG00000075706) #14	gtf2h3 (ENSSSAG00000075659) #13	psmd9 (ENSSSAG00000075653)	BCL7A (ENSSSAG00000075650)	MLXIP (ENSSSAG00000075637)	ENSSSAG00000075500	ENSSSAG00000075467 #36	ENSSSAG00000075156 #30	rilpl2 (ENSSSAG00000097122) #19	kmt5ab (ENSSSAG00000075132)	ENSSSAG00000075109	ENSSSAG00000075113 #22	ENSSSAG00000073063 #25	ENSSSAG00000085766	ENSSSAG00000113809	arl6ip4 (ENSSSAG00000121888) #26	mthfd2 (ENSSSAG00000072915)	mob1a (ENSSSAG00000085563)	ENSSSAG00000072880	ENSSSAG00000072863	ENSSSAG00000072852	ENSSSAG00000072813	si:ch211-283h6.4 (ENSSSAG00000078449)	ENSSSAG00000072571	sftpbb (ENSSSAG00000072540)	ENSSSAG00000112111	ENSSSAG00000072528
Huchen	MODERN SPECIES	500								psmd9 (ENSHHUG00000000114)	bcl7a (ENSHHUG00000000101)	mlxip (ENSHHUG00000000029)	CLIP1 (ENSHHUG00000052902)	zcchc8 (ENSHHUG00000052901) #37	rsrc2 (ENSHHUG00000052900) #36	hip1rb (ENSHHUG00000052892) #30	rilpl2 (ENSHHUG00000052891) #19	CDK2AP1 (ENSHHUG00000052889) #22	PITPNM2 (ENSHHUG00000052884) #25	arl6ip4 (ENSHHUG00000052881) #26	mthfd2 (ENSHHUG00000052879)	mob1a (ENSHHUG00000052877)	trafd1 (ENSHHUG00000052869)	ENSHHUG00000052863	INPP5J (ENSHHUG00000052862)	MAT2A (ENSHHUG00000052857)	si:ch211-283h6.4 (ENSHHUG00000052855)	usp39 (ENSHHUG00000052854)	sftpbb (ENSHHUG00000052846)	ENSHHUG00000052845	ENSHHUG00000052844	ebf2 (ENSHHUG00000052843)	ebf2 (ENSHHUG00000052841)
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	12	gtf2h3 (ENSELUG00000016173) #13	ENSELUG00000016127	psmd9 (ENSELUG00000027208)	CFAP251 (ENSELUG00000016098)	bcl7a (ENSELUG00000016024)	mlxip (ENSELUG00000016006)	B3GNT4 (ENSELUG00000033738)	CLIP1 (ENSELUG00000015932)	zcchc8 (ENSELUG00000000588) #37	rsrc2 (ENSELUG00000015753) #36	KNTC1 (ENSELUG00000015729) #35	hip1rb (ENSELUG00000015579) #30	RILPL1 (ENSELUG00000015330) #17	rilpl2 (ENSELUG00000015255) #19	kmt5ab (ENSELUG00000030340)	CDK2AP1 (ENSELUG00000026401) #22	lg13h12orf65 (ENSELUG00000015178) #23	PITPNM2 (ENSELUG00000015073) #25	arl6ip4 (ENSELUG00000014864) #26	mthfd2 (ENSELUG00000014848)	mob1a (ENSELUG00000014804)	trafd1 (ENSELUG00000014733)	ENSELUG00000014606	selenom (ENSELUG00000026520)	INPP5J (ENSELUG00000014418)	mat2ab (ENSELUG00000014295)	si:ch211-283h6.4 (ENSELUG00000027450)	usp39 (ENSELUG00000014265)	sftpbb (ENSELUG00000014234)	EPX (ENSELUG00000001173)	ebf2 (ENSELUG00000014143)
Northern pike	MODERN SPECIES	13	ddx55 (ENSELUG00000002616) #15	EIF2B1 (ENSELUG00000002604) #14	ENSELUG00000034357	ENSELUG00000025715	BCL7A (ENSELUG00000002625)	ENSELUG00000002632	ENSELUG00000028935 ##33	denr (ENSELUG00000002656) #32	ENSELUG00000002709	HIP1R (ENSELUG00000002768) #30	RILPL1 (ENSELUG00000002813) #17	ENSELUG00000029706	snrnp35 (ENSELUG00000000071) #18	kmt5aa (ENSELUG00000002825)	sbno1 (ENSELUG00000002886) #21	CDK2AP1 (ENSELUG00000002934) #22	ENSELUG00000002967 #24	ENSELUG00000033325	PITPNM2 (ENSELUG00000003067) #25	ENSELUG00000003108	KIF2A (ENSELUG00000003141)	ZSWIM6 (ENSELUG00000003169)	ENSELUG00000029949	mat2al (ENSELUG00000003216)	vamp8 (ENSELUG00000003187)	enoph1 (ENSELUG00000003255)	hnrnpdl (ENSELUG00000003241)	TMEM150C (ENSELUG00000003276)	sec31a (ENSELUG00000003329)	lin54 (ENSELUG00000003370)	cops4 (ENSELUG00000003391)
Otomorpha	ANCESTRAL SPECIES	227	ENSGT00390000013143 #13	ENSGT00940000154540.b	ENSGT00390000004147	ENSGT00390000013370	ENSGT00390000002172.B	ENSGT00940000178249	ENSGT00940000155122.b	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.b	ENSGT01050000244838.H.c.b	ENSGT00950000182976.b.b	ENSGT00940000155674.tc	ENSGT00940000157368.n	ENSGT00940000158739.d
Otophysi	ANCESTRAL SPECIES	20	ENSGT00390000003652.d	ENSGT01030000234539.b.b.a.i	ENSGT00940000165894.b	ENSGT00940000159152.d	ENSGT00940000158107.a.a	ENSGT00940000155122.b	ENSGT00940000178249	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT01050000244838.H.c.b	ENSGT00950000182976.b.b	ENSGT00940000155674.tc	ENSGT00940000157368.n	ENSGT00940000158739.d	ENSGT00390000001777	ENSGT00940000155101.e	ENSGT00940000156428	ENSGT00940000165179.a	ENSGT00940000157468.b
Characiphysae	ANCESTRAL SPECIES	36	ENSGT00390000003652.d	ENSGT01030000234539.b.b.a.i	ENSGT00940000165894.b	ENSGT00940000159152.d	ENSGT00940000158107.a.a	ENSGT00940000155122.b	ENSGT00940000178249	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT01050000244838.H.c.b	ENSGT00950000182976.b.b	ENSGT00940000155674.tc	ENSGT00940000157368.n	ENSGT00940000158739.d	ENSGT00390000001777	ENSGT00940000155101.d	ENSGT00940000155101.e	ENSGT00940000156428	ENSGT00940000165179.a
Channel catfish	MODERN SPECIES	7	gnsb (ENSIPUG00000016400)	Polm (ENSIPUG00000016367)	ved (ENSIPUG00000016352)	H2AV (ENSIPUG00000016307)	Dusp26 (ENSIPUG00000016293)	ENSIPUG00000016278	ENSIPUG00000016262	ENSIPUG00000016250 ##33	denr (ENSIPUG00000016199) #32	ccdc62 (ENSIPUG00000016163)	HIP1R (ENSIPUG00000016106) #30	rilpl1 (ENSIPUG00000016065) #17	snrnp35 (ENSIPUG00000016053) #18	kmt5aa (ENSIPUG00000016040)	Sbno1 (ENSIPUG00000015830) #21	CDK2AP1 (ENSIPUG00000015810) #22	pitpnm2 (ENSIPUG00000015672) #25	KIF2A (ENSIPUG00000015623)	ZSWIM6 (ENSIPUG00000015590)	ELOVL7 (ENSIPUG00000015565)	DEPDC1B (ENSIPUG00000015531)	PDE4D (ENSIPUG00000015377)	RAB3C (ENSIPUG00000015331)	ENSIPUG00000015299	PLK2 (ENSIPUG00000015264)	MN1 (ENSIPUG00000015254)	pitpnb (ENSIPUG00000015202)	ttc28 (ENSIPUG00000014986)	pla2g3 (ENSIPUG00000014935)	ENSIPUG00000014920	ENSIPUG00000014910
Characiphysae_b	ANCESTRAL SPECIES	9	ENSGT00390000003652.d	ENSGT01030000234539.b.b.a.i	ENSGT00940000165894.b	ENSGT00940000159152.d	ENSGT00940000158107.a.a	ENSGT00940000155122.b	ENSGT00940000178249	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT01050000244838.H.c.b	ENSGT00950000182976.b.b	ENSGT00940000155674.tc	ENSGT00940000157368.n	ENSGT00940000158739.d	ENSGT00940000155101.e	ENSGT00940000165179.a	ENSGT00940000157468.b.t	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B
Characoidei	ANCESTRAL SPECIES	35			ENSGT00390000001803	ENSGT00940000158691	ENSGT00390000003405	ENSGT00940000159009	ENSGT00390000002172.B	ENSGT00990000203619.A.b.b.b.b.a.b ##33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT01050000244838.H.c.b	ENSGT00950000182976.b.b	ENSGT00940000155674.tc	ENSGT00940000157368.n	ENSGT00940000158739.d	ENSGT00390000001777	ENSGT00940000155101.e	ENSGT00940000156428	ENSGT00940000165179.a	ENSGT00940000157468.b.t
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	29	setd1ba (ENSPNAG00000016011)	car15 (ENSPNAG00000015988)	dgcr2 (ENSPNAG00000015946)	ess2 (ENSPNAG00000015902)	TSSK2 (ENSPNAG00000015882)	dusp11 (ENSPNAG00000015877)	ENSPNAG00000015859	tcf7l1a (ENSPNAG00000015838)	ENSPNAG00000015825	cox5ba (ENSPNAG00000015777)	marchf5l (ENSPNAG00000015812)	actr1b (ENSPNAG00000015765)	kctd9b (ENSPNAG00000015726)	kmt5aa (ENSPNAG00000015657)	sbno1 (ENSPNAG00000015622) #21	CDK2AP1 (ENSPNAG00000015411) #22	MPHOSPH9 (ENSPNAG00000015390) #24	PITPNM2 (ENSPNAG00000015351) #25	KIF2A (ENSPNAG00000015019)	ZSWIM6 (ENSPNAG00000003316)	ENSPNAG00000003289	ELOVL7 (ENSPNAG00000003206)	DEPDC1B (ENSPNAG00000003199)	PDE4D (ENSPNAG00000014584)	RAB3C (ENSPNAG00000014471)	ENSPNAG00000014443	PLK2 (ENSPNAG00000014428)	MN1 (ENSPNAG00000014387)	pitpnb (ENSPNAG00000014374)	ENSPNAG00000003084	pla2g3 (ENSPNAG00000003066)
Red-bellied piranha	MODERN SPECIES	271	unga (ENSPNAG00000020332)	alkbh2 (ENSPNAG00000020308)	bcl7a (ENSPNAG00000020300)	CFAP251 (ENSPNAG00000020291)	psmd9 (ENSPNAG00000020236)	ENSPNAG00000020228	gtf2h3 (ENSPNAG00000020211) #13	eif2b1 (ENSPNAG00000020198) #14	tmed2 (ENSPNAG00000003636) #16	vps33a (ENSPNAG00000020114)	zcchc8 (ENSPNAG00000020069) #37	hip1rb (ENSPNAG00000020044) #30	RILPL1 (ENSPNAG00000019828) #17	rilpl2 (ENSPNAG00000019819) #19	kmt5ab (ENSPNAG00000019801)	CDK2AP1 (ENSPNAG00000019785) #22	mtrfr (ENSPNAG00000019769) #23	PITPNM2 (ENSPNAG00000019721) #25	arl6ip4 (ENSPNAG00000019444) #26	mthfd2 (ENSPNAG00000019432)	mob1a (ENSPNAG00000019380)	dguok (ENSPNAG00000019358)	ebf2 (ENSPNAG00000019339)	ank1a (ENSPNAG00000019240)	ENSPNAG00000018858	ENSPNAG00000018845	usp39 (ENSPNAG00000018831)	si:ch211-283h6.4 (ENSPNAG00000018774)	mat2ab (ENSPNAG00000018750)	INPP5J (ENSPNAG00000018716)	ENSPNAG00000003549
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	12	ZMIZ2 (ENSAMXG00000019379)	ppiab (ENSAMXG00000029251)	RNF122 (ENSAMXG00000043836)	DUSP26 (ENSAMXG00000035424)	ENSAMXG00000038021	ENSAMXG00000040376	ENSAMXG00000019385	ENSAMXG00000026162 ##33	denr (ENSAMXG00000019387) #32	ccdc62 (ENSAMXG00000040365)	HIP1R (ENSAMXG00000019400) #30	RILPL1 (ENSAMXG00000038252) #17	snrnp35 (ENSAMXG00000026163) #18	kmt5aa (ENSAMXG00000035373)	sbno1 (ENSAMXG00000019473) #21	CDK2AP1 (ENSAMXG00000039400) #22	MPHOSPH9 (ENSAMXG00000019541) #24	PITPNM2 (ENSAMXG00000019559) #25	KIF2A (ENSAMXG00000019593)	ZSWIM6 (ENSAMXG00000019637)	ELOVL7 (ENSAMXG00000039388)	DEPDC1B (ENSAMXG00000019688)	PDE4D (ENSAMXG00000032612)	RAB3C (ENSAMXG00000019726)	ENSAMXG00000033889	PLK2 (ENSAMXG00000034894)	MN1 (ENSAMXG00000019754)	pitpnb (ENSAMXG00000041418)	ENSAMXG00000043902	ENSAMXG00000019813	ENSAMXG00000024915
Mexicana tetra	MODERN SPECIES	560													hip1rb (ENSAMXG00000009066) #30	rilpl2 (ENSAMXG00000009055) #19	kmt5ab (ENSAMXG00000036425)	CDK2AP1 (ENSAMXG00000035299) #22	mtrfr (ENSAMXG00000031765) #23	PITPNM2 (ENSAMXG00000009034) #25	arl6ip4 (ENSAMXG00000009028) #26	ENSAMXG00000034890
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	14	ppiab (ENSEEEG00000021573)	ENSEEEG00000021576	RNF122 (ENSEEEG00000021578)	DUSP26 (ENSEEEG00000021588)	ENSEEEG00000021589	ENSEEEG00000021591	ENSEEEG00000021592	ENSEEEG00000021593 ##33	denr (ENSEEEG00000021595) #32	ccdc62 (ENSEEEG00000021637)	HIP1R (ENSEEEG00000021642) #30	RILPL1 (ENSEEEG00000021647) #17	snrnp35 (ENSEEEG00000021648) #18	kmt5aa (ENSEEEG00000021649)	sbno1 (ENSEEEG00000021654) #21	CDK2AP1 (ENSEEEG00000021686) #22	ENSEEEG00000021690 #24	PITPNM2 (ENSEEEG00000021710) #25	KIF2A (ENSEEEG00000021796)	ZSWIM6 (ENSEEEG00000021802)	ENSEEEG00000021823	ELOVL7 (ENSEEEG00000022002)	DEPDC1B (ENSEEEG00000022003)	ENSEEEG00000022004	ENSEEEG00000022006	PDE4D (ENSEEEG00000022008)	ENSEEEG00000022009	RAB3C (ENSEEEG00000000027)	PLK2 (ENSEEEG00000000157)	MN1 (ENSEEEG00000000313)	pitpnb (ENSEEEG00000000318)
Electric eel	MODERN SPECIES	269										psmb7 (ENSEEEG00000010340)	NEK6 (ENSEEEG00000010267)	DENND1A (ENSEEEG00000010110)	hip1rb (ENSEEEG00000010085) #30	rilpl2 (ENSEEEG00000010083) #19	kmt5ab (ENSEEEG00000010082)	CDK2AP1 (ENSEEEG00000010078) #22	mtrfr (ENSEEEG00000010077) #23	PITPNM2 (ENSEEEG00000009838) #25	arl6ip4 (ENSEEEG00000009829) #26	mthfd2 (ENSEEEG00000009823)	mob1a (ENSEEEG00000009801)	dguok (ENSEEEG00000009800)	ebf2 (ENSEEEG00000009793)	ank1a (ENSEEEG00000004856)	spaw (ENSEEEG00000004736)	sftpbb (ENSEEEG00000004732)	usp39 (ENSEEEG00000004583)	si:ch211-283h6.4 (ENSEEEG00000004574)	mat2ab (ENSEEEG00000004573)	INPP5J (ENSEEEG00000004572)	selenom (ENSEEEG00000004571)
Cyprinoidei	ANCESTRAL SPECIES	85									ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.b #30	ENSGT00940000157897.a #17	ENSGT00940000157648 #18	ENSGT00940000163293.c.b	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.b #25	ENSGT00940000155570.t	ENSGT00940000155496.b	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT01050000244838.H.c.b	ENSGT00950000182976.b.b	ENSGT00940000155674.tc	ENSGT00940000157368.n	ENSGT00940000158739.d	ENSGT00390000001777	ENSGT00940000155101.e	ENSGT00940000156428	ENSGT00940000165179.a	ENSGT00940000157468.b
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	174					ENSGT00940000155122.b.g.a	ENSGT00390000002172.B.i.b	ENSGT00990000203619.A.b.b.b.b.a.b.d ##33	ENSGT00990000203619.A.b.b.b.b.a.b.c.a ##33	ENSGT00390000014349.c #32	ENSGT00940000167301.b	ENSGT00940000153594.c.e.b.b #30	ENSGT00940000157897.a.b.b #17	ENSGT00940000157648.o #18	ENSGT00940000163293.c.b.a	ENSGT00940000155449.n #21	ENSGT00940000155149.tc.a #22	ENSGT00500000044984.m #24	ENSGT00940000153849.a.a.b.b #25	ENSGT00940000155570.t.b	ENSGT00940000155496.b.b	ENSGT01050000244838.H.c.b.b	ENSGT00950000182976.b.b.a	ENSGT00940000155674.tc.a	ENSGT00940000157368.n.b	ENSGT00940000158739.d.b	ENSGT00390000001777.e.b	ENSGT00940000155101.e.c	ENSGT00940000156428.dd	ENSGT00940000165179.a.a	ENSGT00940000157468.b.q	ENSGT00940000153876.B.g
Cyprininae_a	ANCESTRAL SPECIES	61	ENSGT00940000158973.a.a.m.b.b	ENSGT00950000183125.b.a.a.a.a.a.a	ENSGT01030000234539.b.b.a.i.c	ENSGT00940000165894.b.b	ENSGT00940000159152.d.n.a.a.a	ENSGT00940000155122.b.g.a	ENSGT00390000002172.B.i.b	ENSGT00990000203619.A.b.b.b.b.a.b.d ##33	ENSGT00390000014349.c #32	ENSGT00940000167301.b	ENSGT00940000153594.c.e.b.b #30	ENSGT00940000157897.a.b.b #17	ENSGT00940000157648.o #18	ENSGT00940000163293.c.b.a	ENSGT00940000155449.n #21	ENSGT00940000155149.tc.a #22	ENSGT00500000044984.m #24	ENSGT00940000153849.a.a.b.b #25	ENSGT00940000155570.t.b	ENSGT00940000155496.b.b	ENSGT01050000244838.H.c.b.b	ENSGT00950000182976.b.b.a	ENSGT00990000209747	ENSGT00940000155674.tc.a	ENSGT00940000157368.n.b	ENSGT00390000014771.b.b.i.b	ENSGT00940000158739.d.b	ENSGT00390000001777.e.b	ENSGT00940000155101.e.c	ENSGT00940000156428.dd	ENSGT00940000165179.a.a
Common carp reference	MODERN SPECIES	24	ENSCCRG00000029665	ENSCCRG00000079097	ENSCCRG00000069328	ENSCCRG00000078074	ENSCCRG00000070171	ENSCCRG00000081418	ENSCCRG00000020263	ENSCCRG00000020268 ##33	ENSCCRG00000059468 #32	ENSCCRG00000020292	ENSCCRG00000020305 #30	snrnp35 (ENSCCRG00000020319) #18	ENSCCRG00000075258 #17	kmt5aa (ENSCCRG00000077551)	sbno1 (ENSCCRG00000020386) #21	CDK2AP1 (ENSCCRG00000082781) #22	MPHOSPH9 (ENSCCRG00000072114) #24	PITPNM2 (ENSCCRG00000062219) #25	ENSCCRG00000026091	ENSCCRG00000069464	ELOVL7 (ENSCCRG00000045518)	DEPDC1B (ENSCCRG00000045501)	PDE4D (ENSCCRG00000073113)	RAB3C (ENSCCRG00000077386)	ENSCCRG00000045987	PLK2 (ENSCCRG00000071967)	ENSCCRG00000077958	MN1 (ENSCCRG00000061033)	pitpnb (ENSCCRG00000077431)	TTC28 (ENSCCRG00000070663)	pla2g3 (ENSCCRG00000008621)
Goldfish	MODERN SPECIES	1	ENSCARG00000017473	DUSP26 (ENSCARG00000017463)	RNF122 (ENSCARG00000017451)	ppiab (ENSCARG00000017438)	denr (ENSCARG00000017382) #32	ccdc62 (ENSCARG00000017369)	HIP1R (ENSCARG00000016877) #30	RILPL1 (ENSCARG00000016823) #17	snrnp35 (ENSCARG00000016815) #18	ZSWIM6 (ENSCARG00000016668)	RILPL1 (ENSCARG00000016640) #17	snrnp35 (ENSCARG00000016633) #18	kmt5aa (ENSCARG00000016583)	sbno1 (ENSCARG00000015302) #21	ENSCARG00000015220	CDK2AP1 (ENSCARG00000015206) #22	MPHOSPH9 (ENSCARG00000015196) #24	PITPNM2 (ENSCARG00000013726) #25	KIF2A (ENSCARG00000011321)	ZSWIM6 (ENSCARG00000010772)	ELOVL7 (ENSCARG00000010731)	DEPDC1B (ENSCARG00000010667)	ENSCARG00000010658	PDE4D (ENSCARG00000008572)	PLK2 (ENSCARG00000008256)	RAB3C (ENSCARG00000008204)	MN1 (ENSCARG00000008194)	pitpnb (ENSCARG00000008155)	TTC28 (ENSCARG00000008011)	ENSCARG00000007663	ptpn11a (ENSCARG00000007329)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000155149.tc.b #22
Goldfish	MODERN SPECIES	28	ENSCARG00000059615	ZMIZ2 (ENSCARG00000059759)	ppiab (ENSCARG00000060511)	RNF122 (ENSCARG00000060546)	DUSP26 (ENSCARG00000060579)	ENSCARG00000060597	ENSCARG00000060610	ENSCARG00000060666	ENSCARG00000060678 ##33	denr (ENSCARG00000060684) #32	ENSCARG00000060779	RILPL1 (ENSCARG00000060827) #17	snrnp35 (ENSCARG00000060909) #18	kmt5aa (ENSCARG00000060929)	sbno1 (ENSCARG00000061047) #21	CDK2AP1 (ENSCARG00000062972) #22	MPHOSPH9 (ENSCARG00000063012) #24	PITPNM2 (ENSCARG00000063083) #25	KIF2A (ENSCARG00000063762)	ZSWIM6 (ENSCARG00000064195)	ELOVL7 (ENSCARG00000064422)	PDE4D (ENSCARG00000064523)	RAB3C (ENSCARG00000065659)	si:dkey-190g11.3 (ENSCARG00000065679)	PLK2 (ENSCARG00000065705)	hic2 (ENSCARG00000065814)	ube2l3a (ENSCARG00000065821)	ckmt2a (ENSCARG00000065833)	RASGRF2 (ENSCARG00000065937)	ANKRD34B (ENSCARG00000067298)	ENSCARG00000067487
Cyprininae	ANCESTRAL SPECIES	68	ENSGT00940000165894.b.a	ENSGT00940000159152.d.n.b	ENSGT00940000158107.a.a.a	ENSGT00510000049866.j.b.b	ENSGT00940000155122.b.g.b	ENSGT00390000002172.B.i.a	ENSGT00990000203619.A.b.b.b.b.a.b.c.b ##33	ENSGT00390000014349.d #32	ENSGT00940000167301.a	ENSGT00940000153594.c.e.b.a #30	ENSGT00940000157897.a.a #17	ENSGT00940000157897.a.b.a #17	ENSGT00940000157648.p #18	ENSGT00940000163293.c.b.b	ENSGT00940000155449.m #21	ENSGT00940000155149.uc #22	ENSGT00500000044984.n #24	ENSGT00940000153849.a.a.b.a #25	ENSGT00940000155570.t.a	ENSGT00940000155496.b.a	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT01050000244838.H.c.b.a	ENSGT00950000182976.b.b.b	ENSGT00940000155674.tc.b	ENSGT00940000157368.n.a
Cyprininae_a	ANCESTRAL SPECIES	11	ENSGT00940000158107.a.a.a	ENSGT00510000049866.j.b.b	ENSGT00940000155122.b.g.b	ENSGT00940000155122.b.h	ENSGT00390000002172.B.i.a	ENSGT00990000203619.A.b.b.b.b.a.b.c.b ##33	ENSGT00990000203619.A.b.b.b.b.a.b.c.a ##33	ENSGT00390000014349.d #32	ENSGT00940000167301.a	ENSGT00940000153594.c.e.b.a #30	ENSGT00940000157897.a.a #17	ENSGT00940000157897.a.b.a #17	ENSGT00940000157648.p #18	ENSGT00940000163293.c.b.b	ENSGT00940000155449.m #21	ENSGT00940000155149.uc #22	ENSGT00500000044984.n #24	ENSGT00940000153849.a.a.b.a #25	ENSGT00940000155570.t.a	ENSGT00940000155496.b.a	ENSGT00940000154486.b.a.a.b.e.a.a.b	ENSGT01050000244838.H.c.b.a	ENSGT00950000182976.b.b.b	ENSGT00940000155674.tc.b	ENSGT00940000157368.n.a	ENSGT00390000014771.b.b.i.a
Golden-line barbel	MODERN SPECIES	109	ppiab (ENSSGRG00000010444)	ENSSGRG00000010443	DUSP26 (ENSSGRG00000010442)	ENSSGRG00000010440	ENSSGRG00000010438	ENSSGRG00000010435	ENSSGRG00000010429	ENSSGRG00000010426 ##33	denr (ENSSGRG00000010405) #32	ccdc62 (ENSSGRG00000010404)	HIP1R (ENSSGRG00000010391) #30	RILPL1 (ENSSGRG00000010380) #17	snrnp35 (ENSSGRG00000010379) #18	kmt5aa (ENSSGRG00000010377)	sbno1 (ENSSGRG00000010101) #21	CDK2AP1 (ENSSGRG00000010091) #22	ENSSGRG00000010086 #24	PITPNM2 (ENSSGRG00000008367) #25	KIF2A (ENSSGRG00000005577)	ZSWIM6 (ENSSGRG00000005001)	ENSSGRG00000004982	ELOVL7 (ENSSGRG00000004937)	DEPDC1B (ENSSGRG00000004934)	ENSSGRG00000004931	PDE4D (ENSSGRG00000002382)	RAB3C (ENSSGRG00000002344)	ENSSGRG00000002342	PLK2 (ENSSGRG00000001368)	MN1 (ENSSGRG00000001139)	pitpnb (ENSSGRG00000054818)	TTC28 (ENSSGRG00000054815)
Zebrafish	MODERN SPECIES	1	tacr1b (ENSDARG00000102900)	scarb1 (ENSDARG00000101557)	ubc (ENSDARG00000102632)	tpst2 (ENSDARG00000099155)	SEZ6L (ENSDARG00000100594)	npm2b (ENSDARG00000053963)	ENSDARG00000114742	DUSP26 (ENSDARG00000103752)	ENSDARG00000060627 #30	ccdc62 (ENSDARG00000111759)	denr (ENSDARG00000037229) #32	ENSDARG00000079483	snrnp35 (ENSDARG00000099913) #18	kmt5aa (ENSDARG00000105231)	sbno1 (ENSDARG00000099080) #21	CDK2AP1 (ENSDARG00000115248) #22	ZSWIM6 (ENSDARG00000101282)	ENSDARG00000102803	grk3 (ENSDARG00000104094)	cryba4 (ENSDARG00000024548)	crybb1 (ENSDARG00000068507)	acads (ENSDARG00000030781)	cldn5b (ENSDARG00000014059)	septin5b (ENSDARG00000036031)	MCTP1 (ENSDARG00000060871)	tlr8b (ENSDARG00000073675)	nr2f1b (ENSDARG00000017168)	arrdc3b (ENSDARG00000036028)	cetn3 (ENSDARG00000011825)	mef2ca (ENSDARG00000029764)	ENSDARG00000098512
Clupeiformes	ANCESTRAL SPECIES	102												ENSGT00940000153594.c.e.a #30	ENSGT00940000157897.b #17	ENSGT00940000160182 #19	ENSGT00940000163293.c.a	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00940000153849.a.a.a #25	ENSGT00390000009670 #26	ENSGT00940000164825	ENSGT00940000157299.c	ENSGT00940000156973	ENSGT00510000048363	ENSGT00940000155950	ENSGT00670000098074	ENSGT00940000160237	ENSGT00390000004511.c.a.e	ENSGT00510000049555	ENSGT00940000154078.b.b	ENSGT00440000033609.x	ENSGT00940000156114.d
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	13	ENSDCDG00000003871	pitpnb (ENSDCDG00000003830)	ENSDCDG00000003431	pla2g3 (ENSDCDG00000003288)	ptpn11a (ENSDCDG00000002696)	ddx55 (ENSDCDG00000002419) #15	ENSDCDG00000002399	ENSDCDG00000002397	ENSDCDG00000002393 ##33	denr (ENSDCDG00000002390) #32	ENSDCDG00000002389	HIP1R (ENSDCDG00000002182) #30	snrnp35 (ENSDCDG00000002117) #18	kmt5aa (ENSDCDG00000002110)	sbno1 (ENSDCDG00000001375) #21	CDK2AP1 (ENSDCDG00000001305) #22	MPHOSPH9 (ENSDCDG00000001303) #24	PITPNM2 (ENSDCDG00000001216) #25	KIF2A (ENSDCDG00000000873)	ZSWIM6 (ENSDCDG00000000784)	ELOVL7 (ENSDCDG00000000756)	DEPDC1B (ENSDCDG00000000749)	PDE4D (ENSDCDG00000000665)	RAB3C (ENSDCDG00000000615)	PLK2 (ENSDCDG00000000583)	fbp1b (ENSDCDG00000000563)	si:dkey-26g8.5 (ENSDCDG00000000375)	gas1b (ENSDCDG00000029994)	c9 (ENSDCDG00000029988)	dab2 (ENSDCDG00000029983)	ENSDCDG00000029969
Denticle herring	MODERN SPECIES	2	ENSDCDG00000027381	ENSDCDG00000027380	ENSDCDG00000027379	ENSDCDG00000027378	ufd1l (ENSDCDG00000027329)	cdc45 (ENSDCDG00000027298)	cldn5a (ENSDCDG00000027290)	zgc:63587 (ENSDCDG00000027279)	septin5a (ENSDCDG00000026274)	gp1bb (ENSDCDG00000026258)	dhx37 (ENSDCDG00000025813)	ENSDCDG00000025785	RILPL1 (ENSDCDG00000025783) #17	rilpl2 (ENSDCDG00000025778) #19	kmt5ab (ENSDCDG00000025774)	CDK2AP1 (ENSDCDG00000025772) #22	mtrfr (ENSDCDG00000025771) #23	PITPNM2 (ENSDCDG00000024572) #25	arl6ip4 (ENSDCDG00000024512) #26	mthfd2 (ENSDCDG00000024489)	ENSDCDG00000024465	EFNA5 (ENSDCDG00000024457)	FBXL17 (ENSDCDG00000024438)	PRXL2C (ENSDCDG00000024392)	cdc14b (ENSDCDG00000024287)	ENSDCDG00000024274	ENSDCDG00000024270	ENSDCDG00000023973	ENSDCDG00000023891	fem1c (ENSDCDG00000023886)	tmed7 (ENSDCDG00000023859)
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	3	SCD5 (ENSCHAG00000023635)	ENSCHAG00000023562	ptpn11a (ENSCHAG00000023368)	tmed2 (ENSCHAG00000023345) #16	ddx55 (ENSCHAG00000022912) #15	ENSCHAG00000022893	ENSCHAG00000022889 ##33	denr (ENSCHAG00000022882) #32	ENSCHAG00000022873	ENSCHAG00000022863	ENSCHAG00000022816 #30	RILPL1 (ENSCHAG00000022779) #17	snrnp35 (ENSCHAG00000022773) #18	kmt5aa (ENSCHAG00000022764)	sbno1 (ENSCHAG00000022142) #21	CDK2AP1 (ENSCHAG00000022126) #22	ENSCHAG00000022123	ENSCHAG00000021656	PITPNM2 (ENSCHAG00000021390) #25	KIF2A (ENSCHAG00000021079)	ZSWIM6 (ENSCHAG00000020814)	ELOVL7 (ENSCHAG00000020797)	DEPDC1B (ENSCHAG00000020741)	ENSCHAG00000020714	stoml2 (ENSCHAG00000020613)	UNC13B (ENSCHAG00000017948)	ENSCHAG00000015864	ENSCHAG00000015782	fam166b (ENSCHAG00000015772)	RNF208 (ENSCHAG00000015736)	slc5a1 (ENSCHAG00000013934)
Atlantic herring	MODERN SPECIES	23	ENSCHAG00000001300	psmd9 (ENSCHAG00000001277)	B3GNT4 (ENSCHAG00000001255)	ENSCHAG00000001246	mlxip (ENSCHAG00000001074)	unga (ENSCHAG00000000967)	alkbh2 (ENSCHAG00000000948)	bcl7a (ENSCHAG00000000924)	CFAP251 (ENSCHAG00000000850)	ENSCHAG00000019925	ENSCHAG00000019898	ENSCHAG00000019826 #30	RILPL1 (ENSCHAG00000019808) #17	rilpl2 (ENSCHAG00000019739) #19	kmt5ab (ENSCHAG00000019730)	CDK2AP1 (ENSCHAG00000019680) #22	mtrfr (ENSCHAG00000019674) #23	ENSCHAG00000019668	PITPNM2 (ENSCHAG00000019619) #25	arl6ip4 (ENSCHAG00000019608) #26	mthfd2 (ENSCHAG00000019568)	ENSCHAG00000019521	PRXL2C (ENSCHAG00000019515)	cdc14b (ENSCHAG00000019268)	znf367 (ENSCHAG00000019236)	ENSCHAG00000019223	ENSCHAG00000019150	ubox5 (ENSCHAG00000019139)	LZTS3 (ENSCHAG00000019093)	sprb (ENSCHAG00000019062)	smyd1b (ENSCHAG00000018761)
Osteoglossiformes	ANCESTRAL SPECIES	82	ENSGT00390000002172.B	ENSGT00940000158691	ENSGT00940000155122.a	ENSGT00390000011475 #37	ENSGT00980000200504	ENSGT00730000111142 #36	ENSGT00390000007883 #35	ENSGT00990000203619.A.b.b.b.b.a.a #33	ENSGT00390000014349 #32	ENSGT00940000167301	ENSGT00940000153594.c.e.a #30	ENSGT00940000157897 #17	ENSGT00940000160182 #19	ENSGT00940000163293.c.a	ENSGT00940000155449 #21	ENSGT00940000155149 #22	ENSGT00390000012759 #23	ENSGT00500000044984 #24	ENSGT00940000153849.a.a.a #25	ENSGT00390000009670 #26	ENSGT00940000164825	ENSGT01050000244898.b.a.s	ENSGT00940000159627	ENSGT00940000163919.a	ENSGT00940000159932.b.c	ENSGT00940000155760.t.a
Asian bonytongue	MODERN SPECIES		bcl7a (ENSSFOG00015030252)	mlxip (ENSSFOG00015018185)	B3GNT4 (ENSSFOG00015018216)	CLIP1 (ENSSFOG00015018234)	zcchc8 (ENSSFOG00015018295) #37	rsrc2 (ENSSFOG00015018329) #36	KNTC1 (ENSSFOG00015018383) #35	HCAR1 (ENSSFOG00015018464) #33	denr (ENSSFOG00015018494) #32	ENSSFOG00015018502	hip1rb (ENSSFOG00015018559) #30	RILPL1 (ENSSFOG00015018977) #17	rilpl2 (ENSSFOG00015029690) #19	kmt5ab (ENSSFOG00015019013)	sbno1 (ENSSFOG00015019025) #21	CDK2AP1 (ENSSFOG00015019104) #22	mtrfr (ENSSFOG00015026668) #23	MPHOSPH9 (ENSSFOG00015019131) #24	PITPNM2 (ENSSFOG00015019153) #25	arl6ip4 (ENSSFOG00015030592) #26	mthfd2 (ENSSFOG00015019212)	mob1a (ENSSFOG00015019239)	dguok (ENSSFOG00015019257)	ENSSFOG00015029722	EIF4EBP1 (ENSSFOG00015027221)	ANK1 (ENSSFOG00015019367)	ccdc22 (ENSSFOG00015019957)	slc38a5b (ENSSFOG00015019972)	wasb (ENSSFOG00015019997)	sema3gb (ENSSFOG00015020068)	tspy (ENSSFOG00015020119)
P. kingsleyae	MODERN SPECIES	395								ENSPKIG00000001071 #33	denr (ENSPKIG00000001107) #32	ENSPKIG00000001151	hip1rb (ENSPKIG00000001219) #30	RILPL1 (ENSPKIG00000001328) #17	rilpl2 (ENSPKIG00000001387) #19	kmt5ab (ENSPKIG00000001401)	sbno1 (ENSPKIG00000001441) #21	CDK2AP1 (ENSPKIG00000001531) #22	ENSPKIG00000001558	mtrfr (ENSPKIG00000001571) #23	PITPNM2 (ENSPKIG00000001652) #25	arl6ip4 (ENSPKIG00000001878) #26	mthfd2 (ENSPKIG00000001917)	mob1a (ENSPKIG00000001975)	dguok (ENSPKIG00000002079)	spaw (ENSPKIG00000002098)	eif4ebp1 (ENSPKIG00000002110)	ank1a (ENSPKIG00000002161)
Reedfish	MODERN SPECIES	9	rflna (ENSECRG00000020707) #7	ccdc92 (ENSECRG00000020716) #9	DNAH10 (ENSECRG00000020898) #10	atp6v0a2b (ENSECRG00000021271) #11	TCTN2 (ENSECRG00000021308) #12	ENSECRG00000021354	gtf2h3 (ENSECRG00000021370) #13	eif2b1 (ENSECRG00000021397) #14	ddx55 (ENSECRG00000021429) #15	tmed2 (ENSECRG00000021452) #16	RILPL1 (ENSECRG00000021466) #17	snrnp35 (ENSECRG00000021489) #18	rilpl2 (ENSECRG00000021504) #19	kmt5ab (ENSECRG00000021521)	sbno1 (ENSECRG00000021578) #21	CDK2AP1 (ENSECRG00000021698) #22	mtrfr (ENSECRG00000021708) #23	PITPNM2 (ENSECRG00000021745) #25	ENSECRG00000021844	ogfod2 (ENSECRG00000021856) #27	zgc:113436 (ENSECRG00000021866)	abcb9 (ENSECRG00000021892) #28	hip1rb (ENSECRG00000021917) #30	denr (ENSECRG00000021938) #32	ENSECRG00000021947 #33	ENSECRG00000021953 #33	ENSECRG00000021957 ##33	ENSECRG00000021966 ##33	KNTC1 (ENSECRG00000021985) #35	rsrc2 (ENSECRG00000022000) #36	zcchc8 (ENSECRG00000022010) #37